Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077113.1| branched-chain-amino-acid aminotransferase, ... 483 e-136
Alignment gi|NP_001013611.2| branched-chain-amino-acid aminotransferase, ... 304 9e-83
>ref|NP_001077113.1| branched-chain-amino-acid aminotransferase, cytosolic [Bos taurus].
Length = 386
Score = 483 bits (1244), Expect = e-136
Identities = 233/246 (94%), Positives = 241/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLD+EWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FVILSPVGPYFS+GSFN
Sbjct: 141 IQQLVKLDEEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVILSPVGPYFSTGSFN 200
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA+ENACQQVLWLYGEDNQITEVGT
Sbjct: 201 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVENACQQVLWLYGEDNQITEVGT 260
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTRQSILDLAH WGEFKVSERYLTMDDLTTA+
Sbjct: 261 MNLFLYWINEDGEEELATPPLDGIILPGVTRQSILDLAHKWGEFKVSERYLTMDDLTTAV 320
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE+RVREMFGSGTACVVCPVS ILYK ETIHIPTMENGPKLASRILEKLTDIQYGREESD
Sbjct: 321 EENRVREMFGSGTACVVCPVSTILYKDETIHIPTMENGPKLASRILEKLTDIQYGREESD 380
Query: 722 WTILVS 739
WTI V+
Sbjct: 381 WTITVA 386
>ref|NP_001013611.2| branched-chain-amino-acid aminotransferase, mitochondrial precursor
[Bos taurus].
Length = 393
Score = 304 bits (779), Expect = 9e-83
Identities = 143/245 (58%), Positives = 185/245 (75%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++LV++DQ+WVP S SLY+RP IG EPSLGV PT+AL+FVILSPVG YF +
Sbjct: 149 IRRLVEVDQDWVPGSMGTSLYVRPVLIGNEPSLGVGHPTRALLFVILSPVGAYFPGDALK 208
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG G+ K+GGNYG ++ Q EA + C+QVLWLYG D+++TEVGT
Sbjct: 209 PVSLLADPSFIRAWVGGVGNYKLGGNYGPTVLVQQEAQKKGCEQVLWLYGPDHELTEVGT 268
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F++W E+G EL TP LDGIILPG+ RQS+LDLA WGEF+V ER +TM + AL
Sbjct: 269 MNIFVFWTYEDGVLELVTPSLDGIILPGIVRQSLLDLARTWGEFRVVERKITMKEFLRAL 328
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
++ RVRE+FGSGTAC VCPV +ILY+G+ HIPTMENGP+L R ++L IQYG + +
Sbjct: 329 KDGRVREVFGSGTACQVCPVHQILYQGKHFHIPTMENGPQLILRFHKELKAIQYGSKAHE 388
Query: 722 WTILV 736
W + V
Sbjct: 389 WMLPV 393
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,482,406
Number of extensions: 1125666
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2615
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543760.2| PREDICTED: similar to branched chain aminotrans... 476 e-134
Alignment gi|XP_541509.2| PREDICTED: similar to Branched-chain-amino-acid... 310 1e-84
>ref|XP_543760.2| PREDICTED: similar to branched chain aminotransferase 1, cytosolic
[Canis familiaris].
Length = 437
Score = 476 bits (1225), Expect = e-134
Identities = 229/246 (93%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I+QLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FVILSPVGPYFSSG+F
Sbjct: 192 IKQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVILSPVGPYFSSGTFK 251
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA+++ CQQVLWLYGEDNQITEVGT
Sbjct: 252 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAMDSGCQQVLWLYGEDNQITEVGT 311
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTRQSILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 312 MNLFLYWINEDGEEELATPPLDGIILPGVTRQSILDLAHKWGEFKVSERYLTMDDLTTAL 371
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLA RIL+KLTDIQYGREESD
Sbjct: 372 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLAGRILDKLTDIQYGREESD 431
Query: 722 WTILVS 739
WTI+VS
Sbjct: 432 WTIIVS 437
>ref|XP_541509.2| PREDICTED: similar to Branched-chain-amino-acid aminotransferase,
mitochondrial precursor (BCAT(m)) (Placental protein 18)
(PP18) [Canis familiaris].
Length = 393
Score = 310 bits (795), Expect = 1e-84
Identities = 146/245 (59%), Positives = 187/245 (76%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++LV++D++WVP SLY+RP IG EPSLGV + T+AL+FVIL PVG YF + +
Sbjct: 149 IRRLVEVDKDWVPEGKDTSLYVRPVLIGNEPSLGVTQSTQALLFVILCPVGAYFPGDAMD 208
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG GD K+GGNYG ++ Q EA + C+QVLWLYG D+Q+TEVGT
Sbjct: 209 PVSLLADPAFIRAWVGGVGDYKLGGNYGPTVLVQQEAKKRGCEQVLWLYGPDHQLTEVGT 268
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TP LDG+ILPGV RQS+LDLA WGEF+V ER +TM +L AL
Sbjct: 269 MNIFIYWTHEDGVLELVTPSLDGVILPGVVRQSLLDLARTWGEFRVVERKVTMKELLRAL 328
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILY+G+ + IPTMENGP+L R L++L +IQYG D
Sbjct: 329 EEGRVREVFGSGTACQVCPVHQILYQGKHLRIPTMENGPELILRFLKELKEIQYGTRAHD 388
Query: 722 WTILV 736
W + V
Sbjct: 389 WMLPV 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,365,614
Number of extensions: 1162662
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2746
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171565.1| branched-chain-amino-acid aminotransferase, ... 476 e-134
Alignment gi|NP_001171564.1| branched-chain-amino-acid aminotransferase, ... 476 e-134
Alignment gi|NP_001171563.1| branched-chain-amino-acid aminotransferase, ... 476 e-134
Alignment gi|NP_001171562.1| branched-chain-amino-acid aminotransferase, ... 476 e-134
Alignment gi|NP_005495.2| branched-chain-amino-acid aminotransferase, cyt... 476 e-134
Alignment gi|NP_001158245.1| branched-chain-amino-acid aminotransferase, ... 314 9e-86
Alignment gi|NP_001181.2| branched-chain-amino-acid aminotransferase, mit... 314 9e-86
>ref|NP_001171565.1| branched-chain-amino-acid aminotransferase, cytosolic isoform 5
[Homo sapiens].
Length = 385
Score = 476 bits (1224), Expect = e-134
Identities = 228/246 (92%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FV+LSPVGPYFSSG+FN
Sbjct: 140 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFN 199
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA++N CQQVLWLYGED+QITEVGT
Sbjct: 200 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGT 259
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTR+ ILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 260 MNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTAL 319
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLASRIL KLTDIQYGREESD
Sbjct: 320 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD 379
Query: 722 WTILVS 739
WTI++S
Sbjct: 380 WTIVLS 385
>ref|NP_001171564.1| branched-chain-amino-acid aminotransferase, cytosolic isoform 4
[Homo sapiens].
Length = 398
Score = 476 bits (1224), Expect = e-134
Identities = 228/246 (92%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FV+LSPVGPYFSSG+FN
Sbjct: 153 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFN 212
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA++N CQQVLWLYGED+QITEVGT
Sbjct: 213 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGT 272
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTR+ ILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 273 MNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTAL 332
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLASRIL KLTDIQYGREESD
Sbjct: 333 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD 392
Query: 722 WTILVS 739
WTI++S
Sbjct: 393 WTIVLS 398
>ref|NP_001171563.1| branched-chain-amino-acid aminotransferase, cytosolic isoform 3
[Homo sapiens].
Length = 325
Score = 476 bits (1224), Expect = e-134
Identities = 228/246 (92%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FV+LSPVGPYFSSG+FN
Sbjct: 80 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFN 139
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA++N CQQVLWLYGED+QITEVGT
Sbjct: 140 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGT 199
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTR+ ILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 200 MNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTAL 259
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLASRIL KLTDIQYGREESD
Sbjct: 260 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD 319
Query: 722 WTILVS 739
WTI++S
Sbjct: 320 WTIVLS 325
>ref|NP_001171562.1| branched-chain-amino-acid aminotransferase, cytosolic isoform 2
[Homo sapiens].
Length = 349
Score = 476 bits (1224), Expect = e-134
Identities = 228/246 (92%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FV+LSPVGPYFSSG+FN
Sbjct: 104 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFN 163
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA++N CQQVLWLYGED+QITEVGT
Sbjct: 164 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGT 223
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTR+ ILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 224 MNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTAL 283
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLASRIL KLTDIQYGREESD
Sbjct: 284 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD 343
Query: 722 WTILVS 739
WTI++S
Sbjct: 344 WTIVLS 349
>ref|NP_005495.2| branched-chain-amino-acid aminotransferase, cytosolic isoform 1
[Homo sapiens].
Length = 386
Score = 476 bits (1224), Expect = e-134
Identities = 228/246 (92%), Positives = 239/246 (97%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL+FV+LSPVGPYFSSG+FN
Sbjct: 141 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFN 200
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKYVRA KGGTGDCKMGGNYGSSLFAQCEA++N CQQVLWLYGED+QITEVGT
Sbjct: 201 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGT 260
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTR+ ILDLAH WGEFKVSERYLTMDDLTTAL
Sbjct: 261 MNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTAL 320
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RVREMFGSGTACVVCPVS ILYKGETIHIPTMENGPKLASRIL KLTDIQYGREESD
Sbjct: 321 EGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESD 380
Query: 722 WTILVS 739
WTI++S
Sbjct: 381 WTIVLS 386
>ref|NP_001158245.1| branched-chain-amino-acid aminotransferase, mitochondrial isoform b
[Homo sapiens].
Length = 300
Score = 314 bits (805), Expect = 9e-86
Identities = 144/241 (59%), Positives = 186/241 (77%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++L+++D++WVP + SLY+RP IG EPSLGV +PT+AL+FVIL PVG YF GS
Sbjct: 56 IRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILCPVGAYFPGGSVT 115
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG G+ K+GGNYG ++ Q EA++ C+QVLWLYG D+Q+TEVGT
Sbjct: 116 PVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGT 175
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TPPL+G+ILPGV RQS+LD+A WGEF+V ER +TM L AL
Sbjct: 176 MNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRAL 235
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILYK +HIPTMENGP+L R ++L +IQYG +
Sbjct: 236 EEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHE 295
Query: 722 W 724
W
Sbjct: 296 W 296
>ref|NP_001181.2| branched-chain-amino-acid aminotransferase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 392
Score = 314 bits (805), Expect = 9e-86
Identities = 144/241 (59%), Positives = 186/241 (77%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++L+++D++WVP + SLY+RP IG EPSLGV +PT+AL+FVIL PVG YF GS
Sbjct: 148 IRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILCPVGAYFPGGSVT 207
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG G+ K+GGNYG ++ Q EA++ C+QVLWLYG D+Q+TEVGT
Sbjct: 208 PVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGT 267
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TPPL+G+ILPGV RQS+LD+A WGEF+V ER +TM L AL
Sbjct: 268 MNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRAL 327
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILYK +HIPTMENGP+L R ++L +IQYG +
Sbjct: 328 EEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHE 387
Query: 722 W 724
W
Sbjct: 388 W 388
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,688,574
Number of extensions: 1153914
Number of successful extensions: 2779
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2779
Number of HSP's successfully gapped: 7
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031558.3| branched-chain-amino-acid aminotransferase, cyt... 447 e-126
Alignment gi|NP_001019639.1| branched-chain-amino-acid aminotransferase, ... 447 e-126
Alignment gi|NP_001229982.1| branched-chain-amino-acid aminotransferase, ... 315 6e-86
Alignment gi|NP_001229981.1| branched-chain-amino-acid aminotransferase, ... 315 6e-86
Alignment gi|NP_033867.1| branched-chain-amino-acid aminotransferase, mit... 315 6e-86
>ref|NP_031558.3| branched-chain-amino-acid aminotransferase, cytosolic isoform 2
[Mus musculus].
Length = 386
Score = 447 bits (1150), Expect = e-126
Identities = 213/243 (87%), Positives = 229/243 (94%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I QL+++DQEWVPYSTSASLYIRPTFIGTEPSLGVKKP+KAL+FVILSPVGPYFSSGSF
Sbjct: 141 ILQLLQIDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPSKALLFVILSPVGPYFSSGSFT 200
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKY+RA KGGTGDCKMGGNYG+SL AQCEA+EN CQQVLWLYG+DNQITEVGT
Sbjct: 201 PVSLWANPKYIRAWKGGTGDCKMGGNYGASLLAQCEAVENGCQQVLWLYGKDNQITEVGT 260
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTRQSIL+LA WGEFKV ER+LTMDDL TAL
Sbjct: 261 MNLFLYWINEDGEEELATPPLDGIILPGVTRQSILELAQQWGEFKVCERHLTMDDLATAL 320
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RV+EMFGSGTACVVCPVS ILYKG+ +HIPTMENGPKLASRIL KLTDIQYGR ESD
Sbjct: 321 EGNRVKEMFGSGTACVVCPVSDILYKGQMLHIPTMENGPKLASRILGKLTDIQYGRVESD 380
Query: 722 WTI 730
WTI
Sbjct: 381 WTI 383
>ref|NP_001019639.1| branched-chain-amino-acid aminotransferase, cytosolic isoform 1
[Mus musculus].
Length = 453
Score = 447 bits (1150), Expect = e-126
Identities = 213/243 (87%), Positives = 229/243 (94%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I QL+++DQEWVPYSTSASLYIRPTFIGTEPSLGVKKP+KAL+FVILSPVGPYFSSGSF
Sbjct: 208 ILQLLQIDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPSKALLFVILSPVGPYFSSGSFT 267
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSLWANPKY+RA KGGTGDCKMGGNYG+SL AQCEA+EN CQQVLWLYG+DNQITEVGT
Sbjct: 268 PVSLWANPKYIRAWKGGTGDCKMGGNYGASLLAQCEAVENGCQQVLWLYGKDNQITEVGT 327
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINE+GEEELATPPLDGIILPGVTRQSIL+LA WGEFKV ER+LTMDDL TAL
Sbjct: 328 MNLFLYWINEDGEEELATPPLDGIILPGVTRQSILELAQQWGEFKVCERHLTMDDLATAL 387
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E +RV+EMFGSGTACVVCPVS ILYKG+ +HIPTMENGPKLASRIL KLTDIQYGR ESD
Sbjct: 388 EGNRVKEMFGSGTACVVCPVSDILYKGQMLHIPTMENGPKLASRILGKLTDIQYGRVESD 447
Query: 722 WTI 730
WTI
Sbjct: 448 WTI 450
>ref|NP_001229982.1| branched-chain-amino-acid aminotransferase, mitochondrial isoform 2
[Mus musculus].
Length = 353
Score = 315 bits (806), Expect = 6e-86
Identities = 148/245 (60%), Positives = 186/245 (75%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I+QL+++D++WVP SLY+RP IG EPSLGV T+AL++VIL PVG YF S
Sbjct: 109 IRQLIEVDKDWVPDGNGTSLYVRPVLIGNEPSLGVGMVTQALLYVILCPVGSYFPGDSMT 168
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P +VRA GG GDCK+GGNYG ++ Q EA + C+QVLWLYG D+Q+TEVGT
Sbjct: 169 PVSLLADPSFVRAWIGGVGDCKLGGNYGPTVAVQREAQKRGCEQVLWLYGPDHQLTEVGT 228
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TPPL+G+ILPGV RQS+LDLA WGEF+V+ER +TM +L AL
Sbjct: 229 MNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDLARTWGEFRVAERKVTMKELKRAL 288
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILY+G+ +HIPTMENGP+L R ++L IQYG D
Sbjct: 289 EEGRVREVFGSGTACQVCPVHQILYEGKQLHIPTMENGPELILRFQKELKAIQYGASAHD 348
Query: 722 WTILV 736
W V
Sbjct: 349 WMFRV 353
>ref|NP_001229981.1| branched-chain-amino-acid aminotransferase, mitochondrial isoform 2
[Mus musculus].
Length = 353
Score = 315 bits (806), Expect = 6e-86
Identities = 148/245 (60%), Positives = 186/245 (75%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I+QL+++D++WVP SLY+RP IG EPSLGV T+AL++VIL PVG YF S
Sbjct: 109 IRQLIEVDKDWVPDGNGTSLYVRPVLIGNEPSLGVGMVTQALLYVILCPVGSYFPGDSMT 168
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P +VRA GG GDCK+GGNYG ++ Q EA + C+QVLWLYG D+Q+TEVGT
Sbjct: 169 PVSLLADPSFVRAWIGGVGDCKLGGNYGPTVAVQREAQKRGCEQVLWLYGPDHQLTEVGT 228
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TPPL+G+ILPGV RQS+LDLA WGEF+V+ER +TM +L AL
Sbjct: 229 MNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDLARTWGEFRVAERKVTMKELKRAL 288
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILY+G+ +HIPTMENGP+L R ++L IQYG D
Sbjct: 289 EEGRVREVFGSGTACQVCPVHQILYEGKQLHIPTMENGPELILRFQKELKAIQYGASAHD 348
Query: 722 WTILV 736
W V
Sbjct: 349 WMFRV 353
>ref|NP_033867.1| branched-chain-amino-acid aminotransferase, mitochondrial isoform 1
precursor [Mus musculus].
Length = 393
Score = 315 bits (806), Expect = 6e-86
Identities = 148/245 (60%), Positives = 186/245 (75%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I+QL+++D++WVP SLY+RP IG EPSLGV T+AL++VIL PVG YF S
Sbjct: 149 IRQLIEVDKDWVPDGNGTSLYVRPVLIGNEPSLGVGMVTQALLYVILCPVGSYFPGDSMT 208
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P +VRA GG GDCK+GGNYG ++ Q EA + C+QVLWLYG D+Q+TEVGT
Sbjct: 209 PVSLLADPSFVRAWIGGVGDCKLGGNYGPTVAVQREAQKRGCEQVLWLYGPDHQLTEVGT 268
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F+YW +E+G EL TPPL+G+ILPGV RQS+LDLA WGEF+V+ER +TM +L AL
Sbjct: 269 MNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDLARTWGEFRVAERKVTMKELKRAL 328
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
EE RVRE+FGSGTAC VCPV +ILY+G+ +HIPTMENGP+L R ++L IQYG D
Sbjct: 329 EEGRVREVFGSGTACQVCPVHQILYEGKQLHIPTMENGPELILRFQKELKAIQYGASAHD 388
Query: 722 WTILV 736
W V
Sbjct: 389 WMFRV 393
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,170,161
Number of extensions: 980487
Number of successful extensions: 2270
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2270
Number of HSP's successfully gapped: 5
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126478.2| PREDICTED: branched-chain-amino-acid aminotr... 350 9e-97
Alignment gi|XP_003127327.2| PREDICTED: branched-chain-amino-acid aminotr... 312 3e-85
Alignment gi|XP_003127326.2| PREDICTED: branched-chain-amino-acid aminotr... 312 3e-85
>ref|XP_003126478.2| PREDICTED: branched-chain-amino-acid aminotransferase,
cytosolic-like [Sus scrofa].
Length = 338
Score = 350 bits (898), Expect = 9e-97
Identities = 183/233 (78%), Positives = 184/233 (78%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLG+
Sbjct: 141 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGI------------------------- 175
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
W NYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT
Sbjct: 176 --CTW--------------------NYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 213
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL
Sbjct: 214 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 273
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQ 700
EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQ
Sbjct: 274 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQ 326
>ref|XP_003127327.2| PREDICTED: branched-chain-amino-acid aminotransferase,
mitochondrial isoform 3 [Sus scrofa].
Length = 300
Score = 312 bits (799), Expect = 3e-85
Identities = 144/245 (58%), Positives = 187/245 (76%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++LV++D++WVP S SLY+RP IG EPSLGV PT AL++VIL PVG YF + +
Sbjct: 56 IRRLVEVDRDWVPDSAGTSLYVRPVLIGNEPSLGVGSPTHALLYVILCPVGAYFPGEALS 115
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG GDCK+GGNYG ++F Q EA + C+QVLWLYG D+++TE GT
Sbjct: 116 PVSLLADPSFIRAWVGGVGDCKIGGNYGPTVFVQKEAKKKGCEQVLWLYGPDHELTEAGT 175
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F++W +E+G EL TP LDGIILPGV RQS+LDLA WGEF+V+ER +TM++ AL
Sbjct: 176 MNIFVFWTHEDGALELVTPALDGIILPGVVRQSLLDLARTWGEFRVTERKMTMNEFLRAL 235
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E RVRE+FGSGTAC VCPV +ILY+G+ +HIPTMENGP+L R +L IQYG + +
Sbjct: 236 EHGRVREVFGSGTACQVCPVHRILYQGKFLHIPTMENGPELILRFYNELKMIQYGTKAHE 295
Query: 722 WTILV 736
W + V
Sbjct: 296 WMLQV 300
>ref|XP_003127326.2| PREDICTED: branched-chain-amino-acid aminotransferase,
mitochondrial isoform 2 [Sus scrofa].
Length = 393
Score = 312 bits (799), Expect = 3e-85
Identities = 144/245 (58%), Positives = 187/245 (76%)
Frame = +2
Query: 2 IQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALIFVILSPVGPYFSSGSFN 181
I++LV++D++WVP S SLY+RP IG EPSLGV PT AL++VIL PVG YF + +
Sbjct: 149 IRRLVEVDRDWVPDSAGTSLYVRPVLIGNEPSLGVGSPTHALLYVILCPVGAYFPGEALS 208
Query: 182 PVSLWANPKYVRARKGGTGDCKMGGNYGSSLFAQCEAIENACQQVLWLYGEDNQITEVGT 361
PVSL A+P ++RA GG GDCK+GGNYG ++F Q EA + C+QVLWLYG D+++TE GT
Sbjct: 209 PVSLLADPSFIRAWVGGVGDCKIGGNYGPTVFVQKEAKKKGCEQVLWLYGPDHELTEAGT 268
Query: 362 MNLFLYWINENGEEELATPPLDGIILPGVTRQSILDLAHNWGEFKVSERYLTMDDLTTAL 541
MN+F++W +E+G EL TP LDGIILPGV RQS+LDLA WGEF+V+ER +TM++ AL
Sbjct: 269 MNIFVFWTHEDGALELVTPALDGIILPGVVRQSLLDLARTWGEFRVTERKMTMNEFLRAL 328
Query: 542 EESRVREMFGSGTACVVCPVSKILYKGETIHIPTMENGPKLASRILEKLTDIQYGREESD 721
E RVRE+FGSGTAC VCPV +ILY+G+ +HIPTMENGP+L R +L IQYG + +
Sbjct: 329 EHGRVREVFGSGTACQVCPVHRILYQGKFLHIPTMENGPELILRFYNELKMIQYGTKAHE 388
Query: 722 WTILV 736
W + V
Sbjct: 389 WMLQV 393
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,938,957
Number of extensions: 721357
Number of successful extensions: 1645
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1644
Number of HSP's successfully gapped: 4
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004957
(1165 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 767 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 767 bits (387), Expect = 0.0
Identities = 460/475 (96%), Gaps = 9/475 (1%)
Strand = Plus / Plus
Query: 699 agtatggaagagaagagagcgactggacaatcctagtgtcctgagtggaaaataacagga 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52622866 agtatggaagagaagagagcgactggacaatcctagtgtcctgagtggaaaataacagga 52622925
Query: 759 catcatctgtgtgctattgggacagactgttgcatttgaattatgagaaacttcttcagc 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52622926 catcatctgtgtgctattgggacagactgttgcatttgaattatgagaaacttcttcagc 52622985
Query: 819 gacttgtttttagttgtgcacaatgtggtttgtattatcagtgtcaccagggtgattgtt 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52622986 gacttgtttttagttgtgcacaatgtggtttgtattatcagtgtcaccagggtgattgtt 52623045
Query: 879 tcctcctgccagagaaaacaaattacaatcatccaatggtactttaccaactggctcgta 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52623046 tcctcctgccagagaaaacaaattacaatcatccaatggtactttaccaactggctcgta 52623105
Query: 939 gaagcttaccttaccttctctagaaagatgattatgtaagccatataagcatagactttt 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52623106 gaagcttaccttaccttctctagaaagatgattatgtaagccatataagcatagactttt 52623165
Query: 999 cctccatattcttagtgcctcctttagtacctcactcagattaaaaaat-aaatggttat 1057
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52623166 cctccatattcttagtgcctcctttagtacctcactcagattaaaaaataaaatggttat 52623225
Query: 1058 tctttagcatagatattctgctcctc-accaantgnaangttgtg-tag-aaactgagct 1114
|||||||||||||||||||||||||| ||||| || || ||||| ||| ||||||||||
Sbjct: 52623226 tctttagcatagatattctgctcctcaaccaaatg-aagtttgtgttagaaaactgagct 52623284
Query: 1115 gagtaatttncatag--tacatctcctgc-acacatc-ttatcctcagaaagttt 1165
|||||| || ||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct: 52623285 gagtaaatttcataggtaacatctcctgcaacacatctttatcctcagaaagttt 52623339
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 255 ggaattatggctcatcgctttttgctcaatgtgaagcaatcgagaatgcatgccagcagg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52582221 ggaattatggctcatcgctttttgctcaatgtgaagcaatcgagaatgcatgccagcagg 52582280
Query: 315 ttctgtggctctatggagaggataatcagataactgaagttggaactatgaatctttttc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52582281 ttctgtggctctatggagaggataatcagataactgaagttggaactatgaatctttttc 52582340
Query: 375 tttactggataaatgaaaatggag 398
||||||||||||||||||||||||
Sbjct: 52582341 tttactggataaatgaaaatggag 52582364
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 484 gggtgaatttaaggtgtcagagaggtacctcaccatggacgacttgaccaccgccttgga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52591589 gggtgaatttaaggtgtcagagaggtacctcaccatggacgacttgaccaccgccttgga 52591648
Query: 544 ggagagccgggtgagggagatgttcggttcgggtaccgcctgcgttgtttgcccagtttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52591649 ggagagccgggtgagggagatgttcggttcgggtaccgcctgcgttgtttgcccagtttc 52591708
Query: 604 gaaaatactgtacaagggtgag 625
||||||||||||||||||||||
Sbjct: 52591709 gaaaatactgtacaagggtgag 52591730
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tattcaacagcttgtgaaattggatcaagaatgggtcccctattcaacatctgcaagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52552006 tattcaacagcttgtgaaattggatcaagaatgggtcccctattcaacatctgcaagtct 52552065
Query: 61 ctatattcgtcctacgttcattggaactgag 91
|||||||||||||||||||||||||||||||
Sbjct: 52552066 ctatattcgtcctacgttcattggaactgag 52552096
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 397 agaggaagagctggcaactcccccgctagatggcatcattcttccaggagtgacgaggca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52588598 agaggaagagctggcaactcccccgctagatggcatcattcttccaggagtgacgaggca 52588657
Query: 457 gagcattctggacctggcacacaactggg 485
|||||||||||||||||||||||||||||
Sbjct: 52588658 gagcattctggacctggcacacaactggg 52588686
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 624 agactatacacattccaactatggagaatggtcctaagcttgccagccgtatcttggaaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52594633 agactatacacattccaactatggagaatggtcctaagcttgccagccgtatcttggaaa 52594692
Query: 684 aactgactgatattcag 700
|||||||||||||||||
Sbjct: 52594693 aactgactgatattcag 52594709
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,645,279
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 6
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)