Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus]. 681 0.0
Alignment gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus]. 681 0.0
Alignment gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus]. 679 0.0
Alignment gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus]. 669 0.0
Alignment gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus]. 665 0.0
Alignment gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus]. 660 0.0
Alignment gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus]. 637 0.0
Alignment gi|NP_001070595.1| tubulin beta-3 chain [Bos taurus]. 636 0.0
Alignment gi|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus]. 627 e-180
Alignment gi|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus]. 627 e-180
>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
Length = 445
Score = 681 bits (1757), Expect = 0.0
Identities = 335/356 (94%), Positives = 336/356 (94%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
Length = 445
Score = 681 bits (1757), Expect = 0.0
Identities = 335/356 (94%), Positives = 336/356 (94%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
Length = 445
Score = 679 bits (1753), Expect = 0.0
Identities = 334/356 (93%), Positives = 335/356 (94%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
Length = 445
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
Length = 444
Score = 665 bits (1716), Expect = 0.0
Identities = 324/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
Length = 444
Score = 660 bits (1703), Expect = 0.0
Identities = 320/356 (89%), Positives = 332/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQML+VQ+KNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
Length = 446
Score = 637 bits (1643), Expect = 0.0
Identities = 311/356 (87%), Positives = 321/356 (90%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQLERINVYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E CDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRG MSMKEVDEQML +QNKNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDI 356
>ref|NP_001070595.1| tubulin beta-3 chain [Bos taurus].
Length = 450
Score = 636 bits (1640), Expect = 0.0
Identities = 308/356 (86%), Positives = 325/356 (91%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 356
>ref|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus].
Length = 444
Score = 627 bits (1617), Expect = e-180
Identities = 308/356 (86%), Positives = 320/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGID TG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE++SCDCLQGFQ KIREEYPD IMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRG+MSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGQMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus].
Length = 444
Score = 627 bits (1617), Expect = e-180
Identities = 308/356 (86%), Positives = 320/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGID TG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE++SCDCLQGFQ KIREEYPD IMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRG+MSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGQMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,371,686
Number of extensions: 1122517
Number of successful extensions: 5362
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5274
Number of HSP's successfully gapped: 35
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [... 677 0.0
Alignment gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [... 677 0.0
Alignment gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 669 0.0
Alignment gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 669 0.0
Alignment gi|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis fa... 666 0.0
Alignment gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa... 665 0.0
Alignment gi|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 654 0.0
Alignment gi|XP_535868.2| PREDICTED: similar to tubulin, beta 2 [Canis fa... 643 0.0
Alignment gi|XP_856151.1| PREDICTED: similar to tubulin, beta isoform 2 [... 638 0.0
Alignment gi|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1... 636 0.0
>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
Length = 445
Score = 677 bits (1748), Expect = 0.0
Identities = 333/356 (93%), Positives = 334/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
Length = 445
Score = 677 bits (1748), Expect = 0.0
Identities = 333/356 (93%), Positives = 334/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis familiaris].
Length = 416
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis familiaris].
Length = 445
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis familiaris].
Length = 576
Score = 666 bits (1718), Expect = 0.0
Identities = 324/368 (88%), Positives = 339/368 (92%)
Frame = +2
Query: 74 RARASTSSAAGIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERIN 253
RA A+ + +A MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERIN
Sbjct: 121 RAAAAAAPSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERIN 180
Query: 254 VYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 433
VYYNEA G YVPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 181 VYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 240
Query: 434 GAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFS 613
GAELVD+VLDVVRKE+ESCDCLQGFQ KIREE+PDRIMNTFS
Sbjct: 241 GAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFS 300
Query: 614 VMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHL 793
V+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHL
Sbjct: 301 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL 360
Query: 794 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 973
VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 361 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 420
Query: 974 LTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXH 1153
LTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQML+VQ+KNSSYFVEWIP +
Sbjct: 421 LTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNN 480
Query: 1154 VKTAVCDI 1177
VKTAVCDI
Sbjct: 481 VKTAVCDI 488
>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
Length = 444
Score = 665 bits (1716), Expect = 0.0
Identities = 324/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform 2 [Canis familiaris].
Length = 472
Score = 654 bits (1687), Expect = 0.0
Identities = 325/383 (84%), Positives = 333/383 (86%), Gaps = 27/383 (7%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGN--- 280
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGETPR 60
Query: 281 ------------------------KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 388
KYVPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFG
Sbjct: 61 PFLNYFCVPSALRSLTSPSLPLGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFG 120
Query: 389 QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXX 568
QSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ
Sbjct: 121 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 180
Query: 569 KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFR 748
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICFR
Sbjct: 181 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 240
Query: 749 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 928
TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL
Sbjct: 241 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 300
Query: 929 TSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNV 1108
TSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNV
Sbjct: 301 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNV 360
Query: 1109 QNKNSSYFVEWIPXHVKTAVCDI 1177
QNKNSSYFVEWIP +VKTAVCDI
Sbjct: 361 QNKNSSYFVEWIPNNVKTAVCDI 383
>ref|XP_535868.2| PREDICTED: similar to tubulin, beta 2 [Canis familiaris].
Length = 543
Score = 643 bits (1658), Expect = 0.0
Identities = 316/338 (93%), Positives = 318/338 (94%)
Frame = +2
Query: 164 KFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS 343
+FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS
Sbjct: 117 QFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS 176
Query: 344 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXX 523
GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQ
Sbjct: 177 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHS 236
Query: 524 XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE 703
KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 237 LGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE 296
Query: 704 TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 883
TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 297 TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 356
Query: 884 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFR 1063
PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFR
Sbjct: 357 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFR 416
Query: 1064 GRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
GRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 417 GRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 454
>ref|XP_856151.1| PREDICTED: similar to tubulin, beta isoform 2 [Canis familiaris].
Length = 431
Score = 638 bits (1646), Expect = 0.0
Identities = 319/356 (89%), Positives = 320/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFP RGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFP--------------RGSQQYRALTVPELTQQMFDSKNMM 286
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 287 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 342
>ref|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1 [Canis familiaris].
Length = 450
Score = 636 bits (1640), Expect = 0.0
Identities = 308/356 (86%), Positives = 325/356 (91%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 356
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,150,982
Number of extensions: 1163611
Number of successful extensions: 5732
Number of sequences better than 1.0e-05: 91
Number of HSP's gapped: 5570
Number of HSP's successfully gapped: 103
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens]. 681 0.0
Alignment gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens]. 677 0.0
Alignment gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens]. 669 0.0
Alignment gi|NP_821133.1| tubulin beta chain [Homo sapiens]. 665 0.0
Alignment gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens]. 660 0.0
Alignment gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens]. 636 0.0
Alignment gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens]. 631 0.0
Alignment gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens]. 618 e-177
Alignment gi|NP_110400.1| tubulin beta-1 chain [Homo sapiens]. 565 e-161
Alignment gi|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens]. 501 e-142
>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
Length = 445
Score = 681 bits (1757), Expect = 0.0
Identities = 335/356 (94%), Positives = 336/356 (94%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
Length = 445
Score = 677 bits (1748), Expect = 0.0
Identities = 333/356 (93%), Positives = 334/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
Length = 445
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
Length = 444
Score = 665 bits (1716), Expect = 0.0
Identities = 324/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
Length = 444
Score = 660 bits (1703), Expect = 0.0
Identities = 320/356 (89%), Positives = 332/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQML+VQ+KNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
Length = 450
Score = 636 bits (1640), Expect = 0.0
Identities = 308/356 (86%), Positives = 325/356 (91%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 356
>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
Length = 446
Score = 631 bits (1627), Expect = 0.0
Identities = 307/356 (86%), Positives = 320/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQLERINVYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E CDCLQGFQ KIREE+PDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD++NMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRG MSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 356
>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
Length = 444
Score = 618 bits (1593), Expect = e-177
Identities = 295/356 (82%), Positives = 318/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIV Q GQCGNQIGAKFWEVISDEH ID G+YHGDS LQLERINVYYNEA+G +YV
Sbjct: 1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ GAGNNWAKGHYTEGAEL++SV+DVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRI+NTFS++PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQL+EN DET+ IDNEALYDIC +TLKL TPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV ELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLT AAIFRGRM M+EVDEQM N+Q+KNSSYF +W+P +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDI 356
>ref|NP_110400.1| tubulin beta-1 chain [Homo sapiens].
Length = 451
Score = 565 bits (1457), Expect = e-161
Identities = 275/356 (77%), Positives = 303/356 (85%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQ GQCGNQIGAKFWE+I +EHGID GS G S LQLERI+VYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAGSDRGASALQLERISVYYNEAYGRKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDS+RS G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++VL+VV
Sbjct: 61 PRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
R ESESCDCLQGFQ KIREEYPDRIMN+FSVMPSPKVSDTVV
Sbjct: 121 RHESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNA LS+HQL+EN D + IDNEALYDICFRTLKLTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181 EPYNAVLSIHQLIENADACFCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGITTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQMFD++N M
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNTM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACD R GRYLTVA IFRG+MS KEVD+Q+L+VQ +NSS FVEWIP +VK AVCDI
Sbjct: 301 AACDLRRGRYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVKVAVCDI 356
>ref|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens].
Length = 378
Score = 501 bits (1290), Expect = e-142
Identities = 243/284 (85%), Positives = 255/284 (89%)
Frame = +2
Query: 326 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQG 505
MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1 MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60
Query: 506 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQL 685
FQ K+REEYPDRIMNTFSV+PSPKVSDTVVEPYNATLS+HQL
Sbjct: 61 FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120
Query: 686 VENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 865
VENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121 VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180
Query: 866 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLT 1045
LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLT
Sbjct: 181 LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 240
Query: 1046 VAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
VA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 241 VATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,092,380
Number of extensions: 1121134
Number of successful extensions: 5138
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5027
Number of HSP's successfully gapped: 28
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033476.1| tubulin beta-2A chain [Mus musculus]. 681 0.0
Alignment gi|NP_076205.1| tubulin beta-2B chain [Mus musculus]. 677 0.0
Alignment gi|NP_666228.1| tubulin beta-2C chain [Mus musculus]. 669 0.0
Alignment gi|NP_035785.1| tubulin beta-5 chain [Mus musculus]. 665 0.0
Alignment gi|NP_033477.2| tubulin beta-4 chain [Mus musculus]. 660 0.0
Alignment gi|NP_075768.1| tubulin beta-3 chain [Mus musculus]. 636 0.0
Alignment gi|NP_080749.2| tubulin beta-6 chain [Mus musculus]. 630 0.0
Alignment gi|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus mu... 595 e-170
Alignment gi|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus mu... 595 e-170
Alignment gi|NP_001074440.1| tubulin, beta 1 [Mus musculus]. 573 e-164
>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
Length = 445
Score = 681 bits (1757), Expect = 0.0
Identities = 335/356 (94%), Positives = 336/356 (94%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
Length = 445
Score = 677 bits (1748), Expect = 0.0
Identities = 333/356 (93%), Positives = 334/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
Length = 445
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
Length = 444
Score = 665 bits (1716), Expect = 0.0
Identities = 324/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
Length = 444
Score = 660 bits (1703), Expect = 0.0
Identities = 320/356 (89%), Positives = 332/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQML+VQ+KNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
Length = 450
Score = 636 bits (1640), Expect = 0.0
Identities = 308/356 (86%), Positives = 325/356 (91%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 356
>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
Length = 447
Score = 630 bits (1626), Expect = 0.0
Identities = 308/356 (86%), Positives = 319/356 (89%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIG KFWEVISDEHGID G Y GDS LQLERI+VYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE E CDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVA +FRG MSMKEVDEQML +QNKNSSYFVEWIP +VK AVCDI
Sbjct: 301 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDI 356
>ref|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
Length = 443
Score = 595 bits (1535), Expect = e-170
Identities = 290/356 (81%), Positives = 313/356 (87%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G+Y GDSDLQLERI++YYNEA+ +KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAI V LEPGTMDSVRSG FG +FRPDNF+F QSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61 PRAIRVYLEPGTMDSVRSGAFGHLFRPDNFIFDQSGTGNNWAKGHYREGAELEDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
+K+ E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 QKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLS+HQLVEN DETY IDNEALY ICFRT+KL TPT+GDLNHLVSATMSGVTT L
Sbjct: 175 EPYNATLSIHQLVENMDETYCIDNEALYYICFRTVKLATPTHGDLNHLVSATMSGVTTSL 234
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGF PLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 235 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFTPLTARGSQQYRALTVPELTQQMFDAKNMM 294
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDP HGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSY VEWIP +V AVCDI
Sbjct: 295 AACDPHHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYLVEWIPNNVNVAVCDI 350
>ref|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
Length = 443
Score = 595 bits (1534), Expect = e-170
Identities = 290/356 (81%), Positives = 313/356 (87%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G+Y GDSDLQLERI++YYNEA+ +KY+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYL 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILV LEPGTMDSVRSG FG +FRPDNF+FGQSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61 PRAILVYLEPGTMDSVRSGAFGHLFRPDNFIFGQSGTGNNWAKGHYREGAELEDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RK+ E+CDCLQGFQ K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNA+LS+HQLVEN DETY I+NEALYDICFRT+KL TPTYGDLNHLVSATMSGVTT L
Sbjct: 175 EPYNASLSIHQLVENMDETYCINNEALYDICFRTVKLATPTYGDLNHLVSATMSGVTTSL 234
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRK AVNM PFPRLHFFMPGFAPLT RGSQQYRALTVPELTQ MFD+KNMM
Sbjct: 235 RFPGQLNADLRKQAVNMXPFPRLHFFMPGFAPLTDRGSQQYRALTVPELTQXMFDAKNMM 294
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AA DPRHGRYLTVA +FRGRMSMKEVDEQML +Q+KNSSY VEWIP +V AVCDI
Sbjct: 295 AAYDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYLVEWIPNNVNVAVCDI 350
>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
Length = 451
Score = 573 bits (1478), Expect = e-164
Identities = 275/356 (77%), Positives = 308/356 (86%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQ GQCGNQIGAKFWEVI +EHGID GSY G S LQLERI+VYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDS+RS G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++V+DVV
Sbjct: 61 PRAVLVDLEPGTMDSIRSSRLGVLFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVMDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
R+ESESCDCLQGFQ KIREEYPDRI+N+FSVMPSPKVSDTVV
Sbjct: 121 RRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNA LS+HQL+ENTD + IDNEALYDICFRTL+LTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181 EPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQMFD++N+M
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPR GRYLTVA IFRG+MS KEVD+Q+L++Q +NS+ FVEWIP +VK AVCDI
Sbjct: 301 AACDPRRGRYLTVACIFRGKMSTKEVDQQLLSIQTRNSNCFVEWIPNNVKVAVCDI 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,752,268
Number of extensions: 923412
Number of successful extensions: 4107
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3982
Number of HSP's successfully gapped: 28
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa]. 677 0.0
Alignment gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s... 669 0.0
Alignment gi|NP_001038077.1| tubulin beta chain [Sus scrofa]. 665 0.0
Alignment gi|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus s... 486 e-174
Alignment gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa]. 561 e-160
Alignment gi|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus sc... 501 e-142
Alignment gi|XP_003123158.2| PREDICTED: far upstream element-binding prot... 478 e-135
Alignment gi|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partia... 468 e-132
Alignment gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ... 290 1e-78
Alignment gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa]. 289 2e-78
>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
Length = 445
Score = 677 bits (1748), Expect = 0.0
Identities = 333/356 (93%), Positives = 334/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKESESCDCLQGFQ KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
Length = 445
Score = 669 bits (1725), Expect = 0.0
Identities = 325/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
Length = 444
Score = 665 bits (1716), Expect = 0.0
Identities = 324/356 (91%), Positives = 333/356 (93%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
AACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIP +VKTAVCDI
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI 356
>ref|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus scrofa].
Length = 416
Score = 486 bits (1251), Expect(2) = e-174
Identities = 241/262 (91%), Positives = 242/262 (92%)
Frame = +2
Query: 392 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXK 571
SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQ K
Sbjct: 66 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 125
Query: 572 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT 751
IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT
Sbjct: 126 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT 185
Query: 752 LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 931
LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT
Sbjct: 186 LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 245
Query: 932 SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQ 1111
SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQ
Sbjct: 246 SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQ 305
Query: 1112 NKNSSYFVEWIPXHVKTAVCDI 1177
NKNSSYFVEWIP +VKTAVCDI
Sbjct: 306 NKNSSYFVEWIPNNVKTAVCDI 327
Score = 144 bits (363), Expect(2) = e-174
Identities = 65/68 (95%), Positives = 66/68 (97%)
Frame = +3
Query: 192 MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP 371
MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP
Sbjct: 1 MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP 60
Query: 372 TTLCLARA 395
TTLC + A
Sbjct: 61 TTLCSSGA 68
>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
Length = 449
Score = 561 bits (1445), Expect = e-160
Identities = 271/356 (76%), Positives = 298/356 (83%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 289
MREIVHIQ GQCGNQIG+KFWEVI +EHGID GSY GD +QLERI+VYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYV 60
Query: 290 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 469
PRA+LVDLEPGTMDS+RS G +FRPD+FV G SGAGNNWAKGHYTEGAELV+ VLD V
Sbjct: 61 PRAVLVDLEPGTMDSIRSSRLGALFRPDSFVHGNSGAGNNWAKGHYTEGAELVEGVLDAV 120
Query: 470 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 649
R E+E CDCLQGFQ KIREE+PDRI+N+FSVMPS KVSDTVV
Sbjct: 121 RSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSAKVSDTVV 180
Query: 650 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 829
EPYNA LS+HQL++N D + IDNEALYDIC RTL+LTTPTYGDLNHLVS TMSGVTT L
Sbjct: 181 EPYNAVLSIHQLLQNADACFCIDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVTTSL 240
Query: 830 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 1009
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRALTV ELTQQMFD++N M
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALTVAELTQQMFDARNTM 300
Query: 1010 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
ACDPR GRYLTVA IFRG+MS KEVDEQ+L VQ +NSS FVEWIP ++K AVCDI
Sbjct: 301 TACDPRRGRYLTVACIFRGQMSTKEVDEQLLTVQTRNSSCFVEWIPNNLKVAVCDI 356
>ref|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus scrofa].
Length = 378
Score = 501 bits (1290), Expect = e-142
Identities = 243/284 (85%), Positives = 255/284 (89%)
Frame = +2
Query: 326 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQG 505
MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1 MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60
Query: 506 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQL 685
FQ K+REEYPDRIMNTFSV+PSPKVSDTVVEPYNATLS+HQL
Sbjct: 61 FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120
Query: 686 VENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 865
VENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121 VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180
Query: 866 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLT 1045
LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLT
Sbjct: 181 LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 240
Query: 1046 VAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
VA +FRGRMSMKEVDEQML +Q+KNSSYFVEWIP +VK AVCDI
Sbjct: 241 VATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI 284
>ref|XP_003123158.2| PREDICTED: far upstream element-binding protein 2-like [Sus scrofa].
Length = 930
Score = 478 bits (1229), Expect = e-135
Identities = 234/264 (88%), Positives = 243/264 (92%)
Frame = +2
Query: 386 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXX 565
GQSGAGNNWAKGHYTEGAELVD+VLDVVRKE+ESCDCLQGFQ
Sbjct: 579 GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 638
Query: 566 XKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICF 745
KIREE+PDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICF
Sbjct: 639 SKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 698
Query: 746 RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 925
RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP
Sbjct: 699 RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 758
Query: 926 LTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLN 1105
LTSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQML+
Sbjct: 759 LTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLS 818
Query: 1106 VQNKNSSYFVEWIPXHVKTAVCDI 1177
VQ+KNSSYFVEWIP +VKTAVCDI
Sbjct: 819 VQSKNSSYFVEWIPNNVKTAVCDI 842
>ref|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partial [Sus scrofa].
Length = 366
Score = 468 bits (1205), Expect = e-132
Identities = 230/267 (86%), Positives = 239/267 (89%)
Frame = +2
Query: 377 FVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXX 556
F+ GQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKESE CDCLQGFQ
Sbjct: 10 FIPGQTGAGNNWAKGHYTEGAELMDSVLDVVRKESEHCDCLQGFQLTHSLGGGTGSGMGT 69
Query: 557 XXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYD 736
KIREE+PDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYD
Sbjct: 70 LLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 129
Query: 737 ICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 916
ICFRTLKLTTPTYGDLNHLVSATMSGVTT LRFPGQLNADLRKLAVNMVPFPRLHFFMPG
Sbjct: 130 ICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 189
Query: 917 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQ 1096
FAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVA +FRG MSMKEVDEQ
Sbjct: 190 FAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQ 249
Query: 1097 MLNVQNKNSSYFVEWIPXHVKTAVCDI 1177
ML +QNKNSSYFVEWIP +VK AVCDI
Sbjct: 250 MLAIQNKNSSYFVEWIPNNVKVAVCDI 276
>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
Length = 449
Score = 290 bits (741), Expect = 1e-78
Identities = 140/355 (39%), Positives = 205/355 (57%), Gaps = 2/355 (0%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 283
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 284 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 463
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 464 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDT 643
+RK ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 644 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 823
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 824 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 1003
LRF G LN DL + N+VP+PR+HF + +AP+ S + LTV E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1004 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAV 1168
M CDPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGI 355
>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
Length = 451
Score = 289 bits (739), Expect = 2e-78
Identities = 139/355 (39%), Positives = 205/355 (57%), Gaps = 2/355 (0%)
Frame = +2
Query: 110 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 283
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 284 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 463
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 464 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDT 643
+RK ++ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 644 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 823
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 824 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 1003
LRF G LN DL + N+VP+PR+HF + +AP+ S + L+V E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1004 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPXHVKTAV 1168
M CDPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGI 355
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,440,249
Number of extensions: 726600
Number of successful extensions: 3413
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 29
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006963
(1178 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1515 0.0
Sscrofa_Chr01 1223 0.0
Sscrofa_Chr06 1096 0.0
Sscrofa_Chr02 1086 0.0
Sscrofa_Chr17 714 0.0
gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411 244 9e-62
>Sscrofa_Chr07
|| Length = 134764511
Score = 1515 bits (764), Expect = 0.0
Identities = 785/793 (98%)
Strand = Plus / Minus
Query: 386 ggccagagcggtgccggcaacaactgggccaagggccactacacagagggcgccgagctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014811 ggccagagcggtgccggcaacaactgggccaagggccactacacagagggcgccgagctg 2014752
Query: 446 gtggactcggtcctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggc 505
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2014751 gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 2014692
Query: 506 ttccagctgacccactcgctggggggcggcacgggttcggggatgggcaccctgctcatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014691 ttccagctgacccactcgctggggggcggcacgggttcggggatgggcaccctgctcatc 2014632
Query: 566 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014631 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcg 2014572
Query: 626 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014571 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 2014512
Query: 686 gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 745
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2014511 gtggagaacacggatgagacctattgcatcgacaacgaggccctgtacgacatctgcttc 2014452
Query: 746 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014451 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 2014392
Query: 806 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014391 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 2014332
Query: 866 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014331 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 2014272
Query: 926 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014271 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 2014212
Query: 986 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014211 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 2014152
Query: 1046 gtggccgccatcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaac 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014151 gtggccgccatcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaac 2014092
Query: 1106 gtgcagaacaagaacagcagctacttcgtggagtggatccccnnacacgtcaagacngcc 1165
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 2014091 gtgcagaacaagaacagcagctacttcgtggagtggatccccaacaacgtcaagacggcc 2014032
Query: 1166 gtgtgcgacatcc 1178
|||||||||||||
Sbjct: 2014031 gtgtgcgacatcc 2014019
Score = 1491 bits (752), Expect = 0.0
Identities = 782/793 (98%)
Strand = Plus / Minus
Query: 386 ggccagagcggtgccggcaacaactgggccaagggccactacacagagggcgccgagctg 445
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1976329 ggccagagcggtgccggcaacaactgggccaagggccactacacggagggcgccgagctg 1976270
Query: 446 gtggactcggtcctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggc 505
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1976269 gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 1976210
Query: 506 ttccagctgacccactcgctggggggcggcacgggttcggggatgggcaccctgctcatc 565
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1976209 ttccagctgacccactcgctggggggcggcacgggctccgggatgggcaccctgctcatt 1976150
Query: 566 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcg 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976149 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctca 1976090
Query: 626 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976089 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 1976030
Query: 686 gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976029 gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 1975970
Query: 746 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975969 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 1975910
Query: 806 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975909 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 1975850
Query: 866 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975849 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 1975790
Query: 926 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975789 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 1975730
Query: 986 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975729 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1975670
Query: 1046 gtggccgccatcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaac 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975669 gtggccgccatcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaac 1975610
Query: 1106 gtgcagaacaagaacagcagctacttcgtggagtggatccccnnacacgtcaagacngcc 1165
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 1975609 gtgcagaacaagaacagcagctacttcgtggagtggatccccaacaacgtcaagacggcc 1975550
Query: 1166 gtgtgcgacatcc 1178
|||||||||||||
Sbjct: 1975549 gtgtgcgacatcc 1975537
Score = 720 bits (363), Expect = 0.0
Identities = 651/747 (87%)
Strand = Plus / Plus
Query: 401 ggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtcctg 460
|||||||||||||||||||||||||| ||||| || || |||||||| ||||| ||||||
Sbjct: 26972213 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 26972272
Query: 461 gacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctgacccac 520
|| ||||| |||| ||| | |||||||||||||| || |||||||||||||||||||||
Sbjct: 26972273 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 26972332
Query: 521 tcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgcgag 580
|||||||| || ||||| || || || |||||||| ||||||||||||||||||| ||
Sbjct: 26972333 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 26972392
Query: 581 gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcggac 640
|| || ||||||||||||||||| |||||||| ||| ||||||| ||||| || || |||
Sbjct: 26972393 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 26972452
Query: 641 acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 700
|| ||||| ||||||||||||||||||||||| || || ||| ||||||||||||| |||
Sbjct: 26972453 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 26972512
Query: 701 gagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 760
|||||||||| ||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 26972513 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 26972572
Query: 761 accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 820
|||||||| ||||| |||||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 26972573 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 26972632
Query: 821 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 880
|| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 26972633 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 26972692
Query: 881 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 940
||||||||||| || || |||||||||||||||||||| || || ||||||||||| ||
Sbjct: 26972693 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 26972752
Query: 941 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 1000
|||||||||||||| || || || ||||| |||||||| |||||| | ||||| |||||
Sbjct: 26972753 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 26972812
Query: 1001 aacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgccatcttc 1060
||||||||||| ||||| ||||| ||||| ||||| ||||| || ||||| || |||||
Sbjct: 26972813 aacatgatggctgcctgtgacccccgccatggccggtacctcactgtggctgctgtcttc 26972872
Query: 1061 cgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaagaac 1120
|| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 26972873 cgtgggcgcatgtccatgaaggaggtggatgagcagatgctcaacgtgcagaacaagaat 26972932
Query: 1121 agcagctacttcgtggagtggatcccc 1147
|||||||||||||| || |||||||||
Sbjct: 26972933 agcagctacttcgtagaatggatcccc 26972959
Score = 321 bits (162), Expect = 5e-85
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 1 gctataaaaggcgcggccgaggggcggccggaggtctctgcgtcggagtttgccggtctg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1978528 gctataaaaggcgcggccgaggggcggccgcaggtctctgcgtcggagtttgccggtctg 1978469
Query: 61 ccccacgcaattcagggcccgcgcttccaccagctccgcagccggcatcatgcgcgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978468 ccccacgcaattcagggcccgcgcttccaccagctccgcagccggcatcatgcgcgagat 1978409
Query: 121 cgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978408 cgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 1978363
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 165 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987537 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 1987478
Query: 225 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987477 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 1987425
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 275 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987122 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 1987063
Query: 335 gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgtt 384
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987062 gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgtt 1987013
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Minus
Query: 275 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015256 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 2015197
Query: 335 gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgtttgg 387
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2015196 gtcaggtctggacccttcggccagatcttcaggcccgacaacttcgtgtttgg 2015144
Score = 208 bits (105), Expect = 5e-51
Identities = 111/113 (98%)
Strand = Plus / Minus
Query: 165 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015626 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 2015567
Query: 225 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 277
|||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2015566 acagtgacttgcagctggagaggatcaacgtgtactacaatgaagccactggt 2015514
Score = 99.6 bits (50), Expect = 3e-18
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 109 catgcgcgagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 166
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2016476 catgcgtgagatcgtgcacatccaggcgggccagtgcggcaatcagatcggcgccaag 2016419
Score = 85.7 bits (43), Expect = 5e-14
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 165 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 224
|||| |||||||| ||||| || || ||||||||||||||||| |||| || ||||| |
Sbjct: 26971435 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 26971494
Query: 225 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagcc 271
|||||||| |||||||||| | ||| |||||||||||||||||||
Sbjct: 26971495 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagcc 26971541
>Sscrofa_Chr01
|| Length = 315321322
Score = 1223 bits (617), Expect = 0.0
Identities = 746/790 (94%)
Strand = Plus / Minus
Query: 389 cagagcggtgccggcaacaactgggccaagggccactacacagagggcgccgagctggtg 448
||||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct: 314136552 cagagtggtgccgggaacaactgggccaaggggcactacacagaaggcgcagagcttgtc 314136493
Query: 449 gactcggtcctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttc 508
|||||||| ||||| || || ||||| ||| | |||||||||||||| ||||||||||||
Sbjct: 314136492 gactcggtgctggatgtcgtgaggaaggaggcggagagctgtgactgcctgcagggcttc 314136433
Query: 509 cagctgacccactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagc 568
|||||||||||||||||||| || || || || || ||||||||||||||||||||||||
Sbjct: 314136432 cagctgacccactcgctgggtggggggaccgggtctgggatgggcaccctgctcatcagc 314136373
Query: 569 aagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgccc 628
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 314136372 aagatccgggaggagtaccccgaccgcatcatgaacaccttcagcgtggtgccctcgccc 314136313
Query: 629 aaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtg 688
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 314136312 aaggtgtcggacacggtggtggagccctacaacgccaccctctccgtgcaccagctggtg 314136253
Query: 689 gagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgc 748
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 314136252 gagaacacggatgagacctactgcatcgacaacgaggccctgtacgacatctgcttccgc 314136193
Query: 749 accctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314136192 accctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatg 314136133
Query: 809 agcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctg 868
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 314136132 agcggggtcaccacctgcctgcgcttccccggccagctcaacgccgatctgcgcaagctg 314136073
Query: 869 gccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctg 928
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314136072 gctgtgaacatggtgcccttcccgcgcctgcacttcttcatgcctggcttcgcgccgctg 314136013
Query: 929 accagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatg 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314136012 accagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatg 314135953
Query: 989 ttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtg 1048
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314135952 ttcgacgccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtg 314135893
Query: 1049 gccgccatcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtg 1108
|| || | ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314135892 gctgctgtgttcaggggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtg 314135833
Query: 1109 cagaacaagaacagcagctacttcgtggagtggatccccnnacacgtcaagacngccgtg 1168
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 314135832 cagaacaagaacagcagctacttcgtggagtggatccccaacaacgtcaagacggccgtg 314135773
Query: 1169 tgcgacatcc 1178
||||||||||
Sbjct: 314135772 tgcgacatcc 314135763
Score = 119 bits (60), Expect = 4e-24
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 165 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 224
||||||||||||| ||||||||||||||||||||||| || || |||| ||||| || |
Sbjct: 314137338 agttttgggaggtgatcagcgacgagcatggcatcgatcctaccggcacctaccacgggg 314137279
Query: 225 acagcgacttgcagctggagaggatcaacgtgtactacaa 264
|||||||| ||||||||||| |||||||||||||||||||
Sbjct: 314137278 acagcgacctgcagctggagcggatcaacgtgtactacaa 314137239
Score = 77.8 bits (39), Expect = 1e-11
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 116 gagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 166
|||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 314137676 gagatcgtgcacctgcaggccggccagtgcggcaaccagatcggcgccaag 314137626
Score = 69.9 bits (35), Expect = 3e-09
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 280 caagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcggtcag 339
|||||| ||||| || ||| | || ||||| || |||||||||||||||||||| || |
Sbjct: 314137147 caagtacgtgcctcgcgccgtgctcgtggaccttgagccgggcaccatggactccgtgcg 314137088
Query: 340 gtctggacccttcggccagatcttcaggcccgacaactt 378
|| || |||||||| |||||||||||||| ||||||||
Sbjct: 314137087 ctcggggcccttcgggcagatcttcaggccggacaactt 314137049
>Sscrofa_Chr06
|| Length = 157765593
Score = 1096 bits (553), Expect = 0.0
Identities = 721/778 (92%)
Strand = Plus / Plus
Query: 401 ggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtcctg 460
||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 267346 ggcaacaactgggccaaaggtcactacacggagggcgcggagctggtggactcggtcctg 267405
Query: 461 gacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctgacccac 520
|||||||| |||| |||| |||| || ||||| ||||||||||||||||| ||||||
Sbjct: 267406 gacgtggtgcggaaggagtgtgagaattgcgactgcctgcagggcttccagctcacccac 267465
Query: 521 tcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgcgag 580
|| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 267466 tctctggggggcggcacgggctccgggatgggcaccctgctcatcagcaaggtccgcgag 267525
Query: 581 gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcggac 640
|||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 267526 gagtaccctgaccgcatcatgaacaccttcagcgtggtgccctcgcccaaggtgtcggac 267585
Query: 641 acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 700
|||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||
Sbjct: 267586 acggtggtcgagccctacaacgccacgctgtccatccaccagctggtggagaacacggac 267645
Query: 701 gagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 760
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267646 gagacctactgcatcgacaacgaggccctgtacgacatctgcttccgcaccctcaagctg 267705
Query: 761 accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267706 gccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 267765
Query: 821 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 880
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267766 acctccctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 267825
Query: 881 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 940
||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct: 267826 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcactgcccggggc 267885
Query: 941 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267886 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgacgccaag 267945
Query: 1001 aacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgccatcttc 1060
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct: 267946 aacatgatggccgcctgcgacccgcgccacggccgctacctgaccgtggccaccgtcttc 268005
Query: 1061 cgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaagaac 1120
|| || ||||||||||||||||||||||||||||||||||| | | |||| |||||||
Sbjct: 268006 cgagggcgcatgtccatgaaggaggtggacgagcagatgctggccatccagagcaagaac 268065
Query: 1121 agcagctacttcgtggagtggatccccnnacacgtcaagacngccgtgtgcgacatcc 1178
||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 268066 agcagctacttcgtggagtggatccccaacaacgtgaaggtggccgtgtgcgacatcc 268123
Score = 954 bits (481), Expect = 0.0
Identities = 685/753 (90%)
Strand = Plus / Plus
Query: 395 ggtgccggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcg 454
||||| ||||||||||||||||||||||||||||| ||||| || |||||| |||||||
Sbjct: 90812910 ggtgctggcaacaactgggccaagggccactacacggagggtgcggagctgatggactca 90812969
Query: 455 gtcctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctg 514
|||||||| ||||| |||| ||| ||| ||| ||||| |||||||||||||||||
Sbjct: 90812970 gtcctggatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctc 90813029
Query: 515 acccactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatc 574
|||||||||||||| || ||||| || || |||||||||||| |||||||||||||||||
Sbjct: 90813030 acccactcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatc 90813089
Query: 575 cgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtc 634
|| ||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 90813090 cgagaggagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggtg 90813149
Query: 635 tcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaac 694
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 90813150 tcagacacggtggtcgagccctacaacgccacgctgtccgtgcaccagctggtggagaac 90813209
Query: 695 acggatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctg 754
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 90813210 acggatgagacctactgcatcgacaacgaggccctgtatgacatctgcttccgcaccctg 90813269
Query: 755 aagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggg 814
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90813270 aagctgaccacgcctacctacggggacctcaaccacctggtgtcggccaccatgagtggg 90813329
Query: 815 gtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtg 874
|||||||| | ||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 90813330 gtcaccacctccctgcgctttccaggccagctcaacgctgacctgcgcaagctggctgtg 90813389
Query: 875 aacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagc 934
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 90813390 aacatggtccccttcccacgcctgcacttcttcatgcccggcttcgcgccgctaaccgcc 90813449
Query: 935 cgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgac 994
|| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 90813450 cggggcagccagcagtaccgcgccctgacagtgccagagctcacccagcagatgttcgat 90813509
Query: 995 tccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgcc 1054
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct: 90813510 gccaagaacatgatggccgcctgcgaccctcgccacggccgctacctgaccgtggccact 90813569
Query: 1055 atcttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaac 1114
||||| | |||| ||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 90813570 gtcttcaggggccccatgtccatgaaggaggtggacgagcagatgctggccatccagaac 90813629
Query: 1115 aagaacagcagctacttcgtggagtggatcccc 1147
|||||||||||||||||||||||||||||||||
Sbjct: 90813630 aagaacagcagctacttcgtggagtggatcccc 90813662
Score = 87.7 bits (44), Expect = 1e-14
Identities = 86/100 (86%)
Strand = Plus / Plus
Query: 279 acaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcggtca 338
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct: 266480 acaagtatgtgcctcgggccatcctggtggacctggagccggggaccatggacagcgtcc 266539
Query: 339 ggtctggacccttcggccagatcttcaggcccgacaactt 378
| ||||| ||||||| || |||||||||| ||||||||
Sbjct: 266540 gttctggggccttcgggcacctcttcaggcctgacaactt 266579
Score = 85.7 bits (43), Expect = 5e-14
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 116 gagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 166
|||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 259484 gagatcgtgcacatccaggccggccagtgcggcaaccagatcggggccaag 259534
>Sscrofa_Chr02
|| Length = 162569375
Score = 1086 bits (548), Expect = 0.0
Identities = 722/781 (92%)
Strand = Plus / Minus
Query: 398 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtc 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 72987002 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggtt 72986943
Query: 458 ctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctgacc 517
|||||||||||| |||| ||| | |||||||||||||| |||||||||||||| ||||||
Sbjct: 72986942 ctggacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacc 72986883
Query: 518 cactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgc 577
||||||||||| || |||||||| || || ||||| ||||||||||||||||||||||||
Sbjct: 72986882 cactcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgc 72986823
Query: 578 gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcg 637
||||||| ||| ||||| |||||||||||||||||||| | ||||| |||||||| ||
Sbjct: 72986822 gaggagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtct 72986763
Query: 638 gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 697
||||||||||| ||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 72986762 gacacggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacg 72986703
Query: 698 gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 757
||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 72986702 gatgagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaag 72986643
Query: 758 ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 817
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 72986642 ctgaccacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtc 72986583
Query: 818 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72986582 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 72986523
Query: 878 atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 937
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 72986522 atggtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccgg 72986463
Query: 938 ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 997
||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 72986462 ggcagccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgcc 72986403
Query: 998 aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgccatc 1057
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 72986402 aagaacatgatggccgcctgcgacccccgccacggccgctacctgaccgtggccgctgtg 72986343
Query: 1058 ttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaag 1117
||||| |||||||||||||||||||||||||| ||||||||||| | ||| |||| ||||
Sbjct: 72986342 ttccggggccgcatgtccatgaaggaggtggatgagcagatgctgagcgtccagagcaag 72986283
Query: 1118 aacagcagctacttcgtggagtggatccccnnacacgtcaagacngccgtgtgcgacatc 1177
|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 72986282 aacagcagctacttcgtggagtggattcccaacaacgtcaagacggccgtgtgcgacatc 72986223
Query: 1178 c 1178
|
Sbjct: 72986222 c 72986222
Score = 1086 bits (548), Expect = 0.0
Identities = 722/781 (92%)
Strand = Plus / Minus
Query: 398 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtc 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 73065519 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggtt 73065460
Query: 458 ctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctgacc 517
|||||||||||| |||| ||| | |||||||||||||| |||||||||||||| ||||||
Sbjct: 73065459 ctggacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacc 73065400
Query: 518 cactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgc 577
||||||||||| || |||||||| || || ||||| ||||||||||||||||||||||||
Sbjct: 73065399 cactcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgc 73065340
Query: 578 gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcg 637
||||||| ||| ||||| |||||||||||||||||||| | ||||| |||||||| ||
Sbjct: 73065339 gaggagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtct 73065280
Query: 638 gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 697
||||||||||| ||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 73065279 gacacggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacg 73065220
Query: 698 gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 757
||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 73065219 gatgagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaag 73065160
Query: 758 ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 817
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 73065159 ctgaccacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtc 73065100
Query: 818 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73065099 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 73065040
Query: 878 atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 937
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 73065039 atggtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccgg 73064980
Query: 938 ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 997
||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 73064979 ggcagccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgcc 73064920
Query: 998 aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgccatc 1057
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 73064919 aagaacatgatggccgcctgcgacccccgccacggccgctacctgaccgtggccgctgtg 73064860
Query: 1058 ttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaag 1117
||||| |||||||||||||||||||||||||| ||||||||||| | ||| |||| ||||
Sbjct: 73064859 ttccggggccgcatgtccatgaaggaggtggatgagcagatgctgagcgtccagagcaag 73064800
Query: 1118 aacagcagctacttcgtggagtggatccccnnacacgtcaagacngccgtgtgcgacatc 1177
|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 73064799 aacagcagctacttcgtggagtggattcccaacaacgtcaagacggccgtgtgcgacatc 73064740
Query: 1178 c 1178
|
Sbjct: 73064739 c 73064739
Score = 109 bits (55), Expect = 3e-21
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 165 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 224
||||||||||||| ||||| || ||||||||||| || |||||||||| ||||| || |
Sbjct: 73084374 agttttgggaggtgatcagtgatgagcatggcattgatcccactggcacataccacgggg 73084315
Query: 225 acagcgacttgcagctggagaggatcaacgtgtactacaatga 267
|||||||| ||||| |||||||||||||||| |||||||||||
Sbjct: 73084314 acagcgacctgcagttggagaggatcaacgtctactacaatga 73084272
Score = 83.8 bits (42), Expect = 2e-13
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 302 ctggtggatctggagccgggcaccatggactcggtcaggtctggacccttcggccagatc 361
|||||||| ||||||||||||||||||||||| ||| | || || ||||| |||||||||
Sbjct: 73084139 ctggtggacctggagccgggcaccatggactccgtccgctcaggtccctttggccagatc 73084080
Query: 362 ttcaggcccgacaactttgtgtttgg 387
|| | || |||||||||||||||||
Sbjct: 73084079 tttcgacctgacaactttgtgtttgg 73084054
Score = 73.8 bits (37), Expect = 2e-10
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 106 catcatgcgcgagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaa 165
||||||||| |||||||||||| | || || ||||||||||||||||||||||| |||||
Sbjct: 73084975 catcatgcgagagatcgtgcacctgcaagccggccagtgcggcaaccagatcggagccaa 73084916
Query: 166 g 166
|
Sbjct: 73084915 g 73084915
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1069 catgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaagaa 1119
|||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct: 96325399 catgtccatgaaggaggtggacaagcagatgcttaatgtccagaacaagaa 96325449
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1069 catgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaagaa 1119
|||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct: 96491769 catgtccatgaaggaggtggacaagcagatgcttaatgtccagaacaagaa 96491819
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 650 gagccctacaacgccaccctctccgtgcaccagctggtggagaacacggatgagaccta 708
||||||||||| |||| ||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 96324987 gagccctacaatgccatactctcagtgcaccagctggtagaaaacacagatgagaccta 96325045
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 650 gagccctacaacgccaccctctccgtgcaccagctggtggagaacacggatgagaccta 708
||||||||||| |||| ||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 96491357 gagccctacaatgccatactctcagtgcaccagctggtagaaaacacagatgagaccta 96491415
>Sscrofa_Chr17
|| Length = 69701581
Score = 714 bits (360), Expect = 0.0
Identities = 675/781 (86%)
Strand = Plus / Plus
Query: 398 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtc 457
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 66536036 gccggcaacaactgggccaagggccactacacggagggggccgagctggtggagggcgtg 66536095
Query: 458 ctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctgacc 517
||||||| || | | ||| | ||| |||| ||||| ||||||||||||||| ||
Sbjct: 66536096 ctggacgccgtgcgcagcgaggccgagggctgcgactgcctgcagggcttccaggtggtg 66536155
Query: 518 cactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgc 577
||||||||||| ||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct: 66536156 cactcgctgggcggcggcacggggtccgggatgggcacgctgctcatgggcaagatccgc 66536215
Query: 578 gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcg 637
||||||| ||| ||||||||| | ||| |||||||||||||||||||| ||||||| |||
Sbjct: 66536216 gaggagttcccggaccgcatcctcaactccttcagcgtcatgccctcggccaaggtgtcg 66536275
Query: 638 gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 697
||||||||||| ||||||||||||||| || ||| | ||||||||| || ||||| |
Sbjct: 66536276 gacacggtggtggagccctacaacgccgtgctgtccatccaccagctgctgcagaacgcc 66536335
Query: 698 gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 757
|| | || || ||||||||||||||| || ||||||||||||| ||||||||||| |
Sbjct: 66536336 gacgcctgcttctgcatcgacaacgaggcgctctacgacatctgctgccgcaccctgagg 66536395
Query: 758 ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 817
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct: 66536396 ctgaccacgcccacctacggcgacctcaaccacctggtgtcgctgaccatgagcggcgtc 66536455
Query: 818 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 877
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66536456 accacgtcgctgcgcttccccggccagctcaacgccgacctgcgcaagctggccgtgaac 66536515
Query: 878 atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 937
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 66536516 atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcaccgcccag 66536575
Query: 938 ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 997
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||
Sbjct: 66536576 ggcagccagcagtaccgcgcgctgaccgtggccgagctcacccagcagatgttcgacgcc 66536635
Query: 998 aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgccatc 1057
|||| ||| ||||||||||||| |||| ||||||||||||||| |||||| ||||
Sbjct: 66536636 cgcaacaccatgaccgcctgcgacccccgccgcggccgctacctgaccgtggcctgcatc 66536695
Query: 1058 ttccgcggccgcatgtccatgaaggaggtggacgagcagatgctcaacgtgcagaacaag 1117
||||| || | ||||||| ||||| |||||||||||| |||||| |||||||| || |
Sbjct: 66536696 ttccgggggcagatgtccaccaaggaagtggacgagcagctgctcaccgtgcagaccagg 66536755
Query: 1118 aacagcagctacttcgtggagtggatccccnnacacgtcaagacngccgtgtgcgacatc 1177
|||||||||| ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 66536756 aacagcagctgcttcgtggagtggatccccaacaacctcaaggtggccgtgtgcgacatc 66536815
Query: 1178 c 1178
|
Sbjct: 66536816 c 66536816
>gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411
Length = 22714
Score = 244 bits (123), Expect = 9e-62
Identities = 210/239 (87%)
Strand = Plus / Minus
Query: 395 ggtgccggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcg 454
||||| ||||||||||||||||||||||||||||| ||||| || |||||| |||||||
Sbjct: 475 ggtgctggcaacaactgggccaagggccactacacggagggtgcggagctgatggactca 416
Query: 455 gtcctggacgtggtcaggaaagagtcagagagctgtgactgtctgcagggcttccagctg 514
|||||||| ||||| |||| ||| ||| ||| ||||| |||||||||||||||||
Sbjct: 415 gtcctggatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctc 356
Query: 515 acccactcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatc 574
|||||||||||||| || ||||| || || |||||||||||| |||||||||||||||||
Sbjct: 355 acccactcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatc 296
Query: 575 cgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggt 633
|| ||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 295 cgagaggagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggt 237
Score = 190 bits (96), Expect = 1e-45
Identities = 123/132 (93%)
Strand = Plus / Minus
Query: 786 accacctggtgtcggccaccatgagcggggtcaccacgtgcctgcgcttcccgggccagc 845
||||||||||||||||||||||||| ||||||||||| | ||||||||| || |||||||
Sbjct: 132 accacctggtgtcggccaccatgagtggggtcaccacctccctgcgctttccaggccagc 73
Query: 846 tcaacgccgacctgcgcaagctggccgtgaacatggtgcccttcccgcgcctgcacttct 905
||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 72 tcaacgctgacctgcgcaagctggctgtgaacatggtccccttcccacgcctgcacttct 13
Query: 906 tcatgcccggct 917
||||||||||||
Sbjct: 12 tcatgcccggct 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,625,126
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 32
Length of query: 1178
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1157
Effective length of database: 2,808,413,156
Effective search space: 3249334021492
Effective search space used: 3249334021492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)