Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus]. 566 e-162
Alignment gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus]. 561 e-160
Alignment gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus]. 556 e-159
Alignment gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus]. 551 e-157
Alignment gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus]. 549 e-157
Alignment gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus]. 549 e-157
Alignment gi|NP_001070595.1| tubulin beta-3 chain [Bos taurus]. 532 e-152
Alignment gi|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus]. 530 e-150
Alignment gi|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus]. 530 e-150
Alignment gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus]. 527 e-150
>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
Length = 444
Score = 566 bits (1459), Expect(2) = e-162
Identities = 278/297 (93%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 24.6 bits (52), Expect(2) = e-162
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
Length = 445
Score = 561 bits (1446), Expect(2) = e-160
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-160
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
Length = 444
Score = 556 bits (1434), Expect(2) = e-159
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGG YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-159
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
Length = 445
Score = 551 bits (1420), Expect(2) = e-157
Identities = 269/297 (90%), Positives = 276/297 (92%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-157
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
Length = 445
Score = 549 bits (1415), Expect(2) = e-157
Identities = 268/297 (90%), Positives = 275/297 (92%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-157
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
Length = 445
Score = 549 bits (1415), Expect(2) = e-157
Identities = 268/297 (90%), Positives = 275/297 (92%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-157
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001070595.1| tubulin beta-3 chain [Bos taurus].
Length = 450
Score = 532 bits (1371), Expect(2) = e-152
Identities = 259/297 (87%), Positives = 269/297 (90%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G Y GDSDLQL+RISVYYNEA+ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLS+HQLVENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-152
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus].
Length = 444
Score = 530 bits (1364), Expect = e-150
Identities = 263/297 (88%), Positives = 265/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGID TGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEA+SCDCLQGFQ KIREEYPD IMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAK 297
>ref|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus].
Length = 444
Score = 530 bits (1364), Expect = e-150
Identities = 263/297 (88%), Positives = 265/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGID TGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEA+SCDCLQGFQ KIREEYPD IMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAK 297
>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
Length = 446
Score = 527 bits (1357), Expect(2) = e-150
Identities = 257/297 (86%), Positives = 267/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQL+RI+VYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E CDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-150
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,347,253
Number of extensions: 1306216
Number of successful extensions: 4333
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4273
Number of HSP's successfully gapped: 43
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa... 566 e-162
Alignment gi|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis fa... 562 e-161
Alignment gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 561 e-160
Alignment gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 561 e-160
Alignment gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [... 555 e-158
Alignment gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [... 555 e-158
Alignment gi|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform ... 546 e-156
Alignment gi|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1... 532 e-152
Alignment gi|XP_859971.1| PREDICTED: similar to tubulin, beta 3 isoform 2... 529 e-151
Alignment gi|XP_850030.1| PREDICTED: similar to tubulin, beta 6 isoform 2... 528 e-150
>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
Length = 444
Score = 566 bits (1459), Expect(2) = e-162
Identities = 278/297 (93%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 24.6 bits (52), Expect(2) = e-162
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis familiaris].
Length = 576
Score = 562 bits (1448), Expect(2) = e-161
Identities = 287/355 (80%), Positives = 298/355 (83%), Gaps = 2/355 (0%)
Frame = +3
Query: 15 LSE-PSCRRVRTSLLQPPGPVPSFQPATGSRENQNYLSFSCPVHTLRRAKRLE*ILT-MR 188
LSE P RR R PP P P P + +Q P ++R A T MR
Sbjct: 81 LSEAPRGRRDRAPPPPPPQPRPPGAPQLPAPSSQ------LPAPSIRAAAAAAPSATAMR 134
Query: 189 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPR 368
EIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGG YVPR
Sbjct: 135 EIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPR 194
Query: 369 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 548
A+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVVRK
Sbjct: 195 AVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRK 254
Query: 549 EAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEP 728
EAESCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVVEP
Sbjct: 255 EAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEP 314
Query: 729 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRF 908
YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRF
Sbjct: 315 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRF 374
Query: 909 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 375 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 429
Score = 24.6 bits (52), Expect(2) = e-161
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 429 KNMMAACDPRHGR 441
>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis familiaris].
Length = 445
Score = 561 bits (1446), Expect(2) = e-160
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-160
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis familiaris].
Length = 416
Score = 561 bits (1446), Expect(2) = e-160
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-160
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
Length = 445
Score = 555 bits (1430), Expect(2) = e-158
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-158
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
Length = 445
Score = 555 bits (1430), Expect(2) = e-158
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-158
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform 2 [Canis familiaris].
Length = 472
Score = 546 bits (1408), Expect(2) = e-156
Identities = 273/324 (84%), Positives = 278/324 (85%), Gaps = 27/324 (8%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATG---- 350
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATG
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGETPR 60
Query: 351 -----------------------GKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 461
GKYVPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFG
Sbjct: 61 PFLNYFCVPSALRSLTSPSLPLGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFG 120
Query: 462 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXX 641
QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQ
Sbjct: 121 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 180
Query: 642 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 821
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR
Sbjct: 181 KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 240
Query: 822 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 1001
TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL
Sbjct: 241 TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 300
Query: 1002 TSRGSQQYRALTVPELTQQVFDAK 1073
TSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 301 TSRGSQQYRALTVPELTQQMFDAK 324
Score = 24.6 bits (52), Expect(2) = e-156
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 324 KNMMAACDPRHGR 336
>ref|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1 [Canis familiaris].
Length = 450
Score = 532 bits (1371), Expect(2) = e-152
Identities = 259/297 (87%), Positives = 269/297 (90%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G Y GDSDLQL+RISVYYNEA+ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLS+HQLVENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-152
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_859971.1| PREDICTED: similar to tubulin, beta 3 isoform 2 [Canis familiaris].
Length = 453
Score = 529 bits (1362), Expect(2) = e-151
Identities = 259/300 (86%), Positives = 270/300 (90%), Gaps = 3/300 (1%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEAT---GG 353
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G Y GDSDLQL+RISVYYNEA+ G
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSRGGS 60
Query: 354 KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 533
+YVPRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVL
Sbjct: 61 RYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVL 120
Query: 534 DVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSD 713
DVVRKE E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSD
Sbjct: 121 DVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSD 180
Query: 714 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 893
TVVEPYNATLS+HQLVENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVT
Sbjct: 181 TVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVT 240
Query: 894 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
T LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 TSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 300
Score = 24.6 bits (52), Expect(2) = e-151
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 300 KNMMAACDPRHGR 312
>ref|XP_850030.1| PREDICTED: similar to tubulin, beta 6 isoform 2 [Canis familiaris].
Length = 446
Score = 528 bits (1359), Expect(2) = e-150
Identities = 257/297 (86%), Positives = 268/297 (90%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQL+RI+VYYNE++ GKYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSCGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E CDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-150
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,252,736
Number of extensions: 1338988
Number of successful extensions: 4740
Number of sequences better than 1.0e-05: 86
Number of HSP's gapped: 4609
Number of HSP's successfully gapped: 122
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_821133.1| tubulin beta chain [Homo sapiens]. 566 e-162
Alignment gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens]. 561 e-160
Alignment gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens]. 556 e-159
Alignment gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens]. 555 e-158
Alignment gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens]. 549 e-157
Alignment gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens]. 532 e-152
Alignment gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens]. 524 e-149
Alignment gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens]. 518 e-147
Alignment gi|NP_110400.1| tubulin beta-1 chain [Homo sapiens]. 475 e-134
Alignment gi|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens]. 399 e-112
>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
Length = 444
Score = 566 bits (1459), Expect(2) = e-162
Identities = 278/297 (93%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 24.6 bits (52), Expect(2) = e-162
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
Length = 445
Score = 561 bits (1446), Expect(2) = e-160
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-160
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
Length = 444
Score = 556 bits (1434), Expect(2) = e-159
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGG YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-159
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
Length = 445
Score = 555 bits (1430), Expect(2) = e-158
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-158
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
Length = 445
Score = 549 bits (1415), Expect(2) = e-157
Identities = 268/297 (90%), Positives = 275/297 (92%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-157
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
Length = 450
Score = 532 bits (1371), Expect(2) = e-152
Identities = 259/297 (87%), Positives = 269/297 (90%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G Y GDSDLQL+RISVYYNEA+ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLS+HQLVENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-152
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
Length = 446
Score = 524 bits (1350), Expect(2) = e-149
Identities = 255/297 (85%), Positives = 267/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQL+RI+VYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E CDCLQGFQ KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDA+
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAR 297
Score = 24.6 bits (52), Expect(2) = e-149
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 RNMMAACDPRHGR 309
>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
Length = 444
Score = 518 bits (1335), Expect(2) = e-147
Identities = 249/297 (83%), Positives = 266/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIV Q GQCGNQIGAKFWEVISDEH ID GTYHGDS LQL+RI+VYYNEA+GG+YV
Sbjct: 1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ GAGNNWAKGHYTEGAEL++SV+DVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRI+NTFS++PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQL+EN DET+CIDNEALYDIC +TLKL TPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV ELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-147
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_110400.1| tubulin beta-1 chain [Homo sapiens].
Length = 451
Score = 475 bits (1223), Expect = e-134
Identities = 229/297 (77%), Positives = 254/297 (85%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQ GQCGNQIGAKFWE+I +EHGID G+ G S LQL+RISVYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAGSDRGASALQLERISVYYNEAYGRKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDS+RS G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++VL+VV
Sbjct: 61 PRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
R E+ESCDCLQGFQ KIREEYPDRIMN+FSV+PSPKVSDTVV
Sbjct: 121 RHESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNA LS+HQL+EN D +CIDNEALYDICFRTLKLTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181 EPYNAVLSIHQLIENADACFCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGITTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQ+FDA+
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDAR 297
>ref|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens].
Length = 378
Score = 399 bits (1025), Expect(2) = e-112
Identities = 194/225 (86%), Positives = 201/225 (89%)
Frame = +3
Query: 399 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 578
MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1 MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60
Query: 579 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL 758
FQ K+REEYPDRIMNTFSVVPSPKVSDTVVEPYNATLS+HQL
Sbjct: 61 FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120
Query: 759 VENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 938
VENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121 VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180
Query: 939 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 181 LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 225
Score = 24.6 bits (52), Expect(2) = e-112
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 225 KNMMAACDPRHGR 237
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,301,480
Number of extensions: 1315959
Number of successful extensions: 4415
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4359
Number of HSP's successfully gapped: 37
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035785.1| tubulin beta-5 chain [Mus musculus]. 566 e-162
Alignment gi|NP_666228.1| tubulin beta-2C chain [Mus musculus]. 561 e-160
Alignment gi|NP_033477.2| tubulin beta-4 chain [Mus musculus]. 556 e-159
Alignment gi|NP_076205.1| tubulin beta-2B chain [Mus musculus]. 555 e-159
Alignment gi|NP_033476.1| tubulin beta-2A chain [Mus musculus]. 549 e-157
Alignment gi|NP_075768.1| tubulin beta-3 chain [Mus musculus]. 532 e-152
Alignment gi|NP_080749.2| tubulin beta-6 chain [Mus musculus]. 525 e-150
Alignment gi|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus mu... 500 e-142
Alignment gi|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus mu... 498 e-141
Alignment gi|NP_001074440.1| tubulin, beta 1 [Mus musculus]. 481 e-136
>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
Length = 444
Score = 566 bits (1459), Expect(2) = e-162
Identities = 278/297 (93%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 24.6 bits (52), Expect(2) = e-162
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
Length = 445
Score = 561 bits (1446), Expect(2) = e-160
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-160
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
Length = 444
Score = 556 bits (1434), Expect(2) = e-159
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGG YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-159
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
Length = 445
Score = 555 bits (1430), Expect(2) = e-159
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-159
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
Length = 445
Score = 549 bits (1415), Expect(2) = e-157
Identities = 268/297 (90%), Positives = 275/297 (92%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-157
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
Length = 450
Score = 532 bits (1371), Expect(2) = e-152
Identities = 259/297 (87%), Positives = 269/297 (90%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G Y GDSDLQL+RISVYYNEA+ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLS+HQLVENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-152
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
Length = 447
Score = 525 bits (1352), Expect(2) = e-150
Identities = 257/297 (86%), Positives = 266/297 (89%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIG KFWEVISDEHGID G Y GDS LQL+RISVYYNE++ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE E CDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-150
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
Length = 443
Score = 500 bits (1287), Expect = e-142
Identities = 244/297 (82%), Positives = 260/297 (87%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G Y GDSDLQL+RIS+YYNEA+ KY+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYL 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILV LEPGTMDSVRSG FG +FRPDNF+FGQSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61 PRAILVYLEPGTMDSVRSGAFGHLFRPDNFIFGQSGTGNNWAKGHYREGAELEDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RK+ E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNA+LS+HQLVEN DETYCI+NEALYDICFRT+KL TPTYGDLNHLVSATMSGVTT L
Sbjct: 175 EPYNASLSIHQLVENMDETYCINNEALYDICFRTVKLATPTYGDLNHLVSATMSGVTTSL 234
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRK AVNM PFPRLHFFMPGFAPLT RGSQQYRALTVPELTQ +FDAK
Sbjct: 235 RFPGQLNADLRKQAVNMXPFPRLHFFMPGFAPLTDRGSQQYRALTVPELTQXMFDAK 291
>ref|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
Length = 443
Score = 498 bits (1282), Expect = e-141
Identities = 244/297 (82%), Positives = 260/297 (87%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G Y GDSDLQL+RIS+YYNEA+ KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAI V LEPGTMDSVRSG FG +FRPDNF+F QSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61 PRAIRVYLEPGTMDSVRSGAFGHLFRPDNFIFDQSGTGNNWAKGHYREGAELEDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
+K+ E+CDCLQGFQ K+REEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 QKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLS+HQLVEN DETYCIDNEALY ICFRT+KL TPT+GDLNHLVSATMSGVTT L
Sbjct: 175 EPYNATLSIHQLVENMDETYCIDNEALYYICFRTVKLATPTHGDLNHLVSATMSGVTTSL 234
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGF PLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 235 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFTPLTARGSQQYRALTVPELTQQMFDAK 291
>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
Length = 451
Score = 481 bits (1238), Expect = e-136
Identities = 232/307 (75%), Positives = 259/307 (84%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQ GQCGNQIGAKFWEVI +EHGID G+Y G S LQL+RISVYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDS+RS G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++V+DVV
Sbjct: 61 PRAVLVDLEPGTMDSIRSSRLGVLFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVMDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
R+E+ESCDCLQGFQ KIREEYPDRI+N+FSV+PSPKVSDTVV
Sbjct: 121 RRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNA LS+HQL+ENTD +CIDNEALYDICFRTL+LTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181 EPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKT*W 1082
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQ+FDA+
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIM 300
Query: 1083 LPVTPAR 1103
P R
Sbjct: 301 AACDPRR 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,145,772
Number of extensions: 1097800
Number of successful extensions: 3558
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3504
Number of HSP's successfully gapped: 35
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038077.1| tubulin beta chain [Sus scrofa]. 566 e-162
Alignment gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s... 561 e-161
Alignment gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa]. 555 e-159
Alignment gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa]. 472 e-133
Alignment gi|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus s... 362 e-114
Alignment gi|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus sc... 399 e-112
Alignment gi|XP_003123158.2| PREDICTED: far upstream element-binding prot... 371 e-104
Alignment gi|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partia... 363 e-101
Alignment gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ... 244 5e-65
Alignment gi|XP_003361835.1| PREDICTED: tubulin beta-6 chain-like, partia... 244 6e-65
>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
Length = 444
Score = 566 bits (1459), Expect(2) = e-162
Identities = 278/297 (93%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 297
Score = 24.6 bits (52), Expect(2) = e-162
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
Length = 445
Score = 561 bits (1446), Expect(2) = e-161
Identities = 273/297 (91%), Positives = 278/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKEAESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 297
Score = 24.6 bits (52), Expect(2) = e-161
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
Length = 445
Score = 555 bits (1430), Expect(2) = e-159
Identities = 270/297 (90%), Positives = 277/297 (93%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEATG KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
RKE+ESCDCLQGFQ KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+K
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSK 297
Score = 24.6 bits (52), Expect(2) = e-159
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 297 KNMMAACDPRHGR 309
>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
Length = 449
Score = 472 bits (1215), Expect = e-133
Identities = 229/307 (74%), Positives = 252/307 (82%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 362
MREIVHIQ GQCGNQIG+KFWEVI +EHGID G+Y GD +QL+RISVYYNEA G KYV
Sbjct: 1 MREIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYV 60
Query: 363 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 542
PRA+LVDLEPGTMDS+RS G +FRPD+FV G SGAGNNWAKGHYTEGAELV+ VLD V
Sbjct: 61 PRAVLVDLEPGTMDSIRSSRLGALFRPDSFVHGNSGAGNNWAKGHYTEGAELVEGVLDAV 120
Query: 543 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 722
R EAE CDCLQGFQ KIREE+PDRI+N+FSV+PS KVSDTVV
Sbjct: 121 RSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSAKVSDTVV 180
Query: 723 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 902
EPYNA LS+HQL++N D +CIDNEALYDIC RTL+LTTPTYGDLNHLVS TMSGVTT L
Sbjct: 181 EPYNAVLSIHQLLQNADACFCIDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVTTSL 240
Query: 903 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKT*W 1082
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRALTV ELTQQ+FDA+
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALTVAELTQQMFDARNTM 300
Query: 1083 LPVTPAR 1103
P R
Sbjct: 301 TACDPRR 307
>ref|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus scrofa].
Length = 416
Score = 362 bits (930), Expect(3) = e-114
Identities = 179/203 (88%), Positives = 183/203 (90%)
Frame = +3
Query: 465 SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXK 644
SGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ K
Sbjct: 66 SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 125
Query: 645 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 824
IREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICFRT
Sbjct: 126 IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT 185
Query: 825 LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 1004
LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT
Sbjct: 186 LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 245
Query: 1005 SRGSQQYRALTVPELTQQVFDAK 1073
SRGSQQYRALTVPELTQQ+FD+K
Sbjct: 246 SRGSQQYRALTVPELTQQMFDSK 268
Score = 64.7 bits (156), Expect(3) = e-114
Identities = 35/63 (55%), Positives = 37/63 (58%)
Frame = +1
Query: 265 MASTPPAPIMGTATCSWTASPCTTMKPQVANMFLVLSWWI*NPGLWTLFAQVLSVRSSDQ 444
MASTP A M TATCSW S CTTMKP V +M SWWI + WT S RSS
Sbjct: 1 MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP 60
Query: 445 TTL 453
TTL
Sbjct: 61 TTL 63
Score = 24.6 bits (52), Expect(3) = e-114
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 268 KNMMAACDPRHGR 280
>ref|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus scrofa].
Length = 378
Score = 399 bits (1025), Expect(2) = e-112
Identities = 194/225 (86%), Positives = 201/225 (89%)
Frame = +3
Query: 399 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 578
MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1 MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60
Query: 579 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQL 758
FQ K+REEYPDRIMNTFSVVPSPKVSDTVVEPYNATLS+HQL
Sbjct: 61 FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120
Query: 759 VENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 938
VENTDETYCIDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121 VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180
Query: 939 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAK 1073
LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 181 LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAK 225
Score = 24.6 bits (52), Expect(2) = e-112
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 225 KNMMAACDPRHGR 237
>ref|XP_003123158.2| PREDICTED: far upstream element-binding protein 2-like [Sus scrofa].
Length = 930
Score = 371 bits (953), Expect(2) = e-104
Identities = 183/205 (89%), Positives = 186/205 (90%)
Frame = +3
Query: 459 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXX 638
GQSGAGNNWAKGHYTEGAELVD+VLDVVRKEAESCDCLQGFQ
Sbjct: 579 GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 638
Query: 639 XKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 818
KIREE+PDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF
Sbjct: 639 SKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 698
Query: 819 RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 998
RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP
Sbjct: 699 RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 758
Query: 999 LTSRGSQQYRALTVPELTQQVFDAK 1073
LTSRGSQQYRALTVPELTQQ+FDAK
Sbjct: 759 LTSRGSQQYRALTVPELTQQMFDAK 783
Score = 24.6 bits (52), Expect(2) = e-104
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 783 KNMMAACDPRHGR 795
>ref|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partial [Sus scrofa].
Length = 366
Score = 363 bits (931), Expect(2) = e-101
Identities = 178/208 (85%), Positives = 186/208 (89%)
Frame = +3
Query: 450 FVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXX 629
F+ GQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE+E CDCLQGFQ
Sbjct: 10 FIPGQTGAGNNWAKGHYTEGAELMDSVLDVVRKESEHCDCLQGFQLTHSLGGGTGSGMGT 69
Query: 630 XXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 809
KIREE+PDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD
Sbjct: 70 LLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 129
Query: 810 ICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 989
ICFRTLKLTTPTYGDLNHLVSATMSGVTT LRFPGQLNADLRKLAVNMVPFPRLHFFMPG
Sbjct: 130 ICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 189
Query: 990 FAPLTSRGSQQYRALTVPELTQQVFDAK 1073
FAPLT+RGSQQYRALTVPELTQQ+FDAK
Sbjct: 190 FAPLTARGSQQYRALTVPELTQQMFDAK 217
Score = 24.6 bits (52), Expect(2) = e-101
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1070 QDMMAACDPRQAR 1108
++MMAACDPR R
Sbjct: 217 KNMMAACDPRHGR 229
>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
Length = 449
Score = 244 bits (624), Expect = 5e-65
Identities = 122/297 (41%), Positives = 174/297 (58%), Gaps = 2/297 (0%)
Frame = +3
Query: 183 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--DRISVYYNEATGGK 356
MRE + I GQ G QIG WE+ EHGI P G D + D + +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 357 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 536
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 537 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDT 716
+RK A+ C LQGF ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 717 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 896
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 897 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFD 1067
LRF G LN DL + N+VP+PR+HF + +AP+ S + LTV E+T F+
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
>ref|XP_003361835.1| PREDICTED: tubulin beta-6 chain-like, partial [Sus scrofa].
Length = 174
Score = 244 bits (623), Expect = 6e-65
Identities = 130/211 (61%), Positives = 137/211 (64%)
Frame = +3
Query: 354 KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 533
KYVPRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVL
Sbjct: 14 KYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELMDSVL 73
Query: 534 DVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSD 713
DVVRKE+E CDCLQGFQ KIREE+PDRIMNTFSV+PSPK
Sbjct: 74 DVVRKESEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPK--- 130
Query: 714 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 893
HLVSATMSGVT
Sbjct: 131 -----------------------------------------------XXHLVSATMSGVT 143
Query: 894 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMP 986
T LRFPGQLNADLRKLAVNMVPFPRLHFFMP
Sbjct: 144 TSLRFPGQLNADLRKLAVNMVPFPRLHFFMP 174
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,259,036
Number of extensions: 838579
Number of successful extensions: 2790
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 36
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006970
(1108 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1261 0.0
Sscrofa_Chr01 591 e-166
Sscrofa_Chr06 589 e-165
Sscrofa_Chr02 565 e-158
Sscrofa_Chr17 234 8e-59
gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411 230 1e-57
>Sscrofa_Chr07
|| Length = 134764511
Score = 1261 bits (636), Expect = 0.0
Identities = 643/644 (99%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 459 ggtcagtctggggcaggcaacaactgggccaagggccactatacagaaggggctgagctg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972198 ggtcagtctggggcaggcaacaactgggccaagggccactatacagaaggggctgagctg 26972257
Query: 519 gttgactcagtcctggatgtggttcggaaggaggctgagagctgtgactgccttcagggc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972258 gttgactcagtcctggatgtggttcggaaggaggctgagagctgtgactgccttcagggc 26972317
Query: 579 ttccagctgacccactcgctgggcggtggcacaggctctggaatgggcactttgctcatc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972318 ttccagctgacccactcgctgggcggtggcacaggctctggaatgggcactttgctcatc 26972377
Query: 639 agcaagatccgtgaagaatatcccgaccgcatcatgaataccttcagtgtcgtgccctca 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972378 agcaagatccgtgaagaatatcccgaccgcatcatgaataccttcagtgtcgtgccctca 26972437
Query: 699 cccaaagtgtctgacaccgtggttgagccctacaacgccaccctctctgtccatcagttg 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972438 cccaaagtgtctgacaccgtggttgagccctacaacgccaccctctctgtccatcagttg 26972497
Query: 759 gtggagaacactgatgagacctactgcatcgacaatgaggccctttacgacatctgcttc 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972498 gtggagaacactgatgagacctactgcatcgacaatgaggccctttacgacatctgcttc 26972557
Query: 819 cgcactctcaagctgaccacgccaacctatggggacctgaaccaccttgtctctgccacc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972558 cgcactctcaagctgaccacgccaacctatggggacctgaaccaccttgtctctgccacc 26972617
Query: 879 atgagtggtgtcaccacctgcctccgcttccctggccagctcaatgctgacctccgcaag 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972618 atgagtggtgtcaccacctgcctccgcttccctggccagctcaatgctgacctccgcaag 26972677
Query: 939 ctggcagtcaatatggtgcccttcccacgtctccacttcttcatgcccggctttgcccct 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972678 ctggcagtcaatatggtgcccttcccacgtctccacttcttcatgcccggctttgcccct 26972737
Query: 999 ctgaccagccgtggaagccagcagtaccgggccctcactgtgcctgagctcacccagcag 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26972738 ctgaccagccgtggaagccagcagtaccgggccctcactgtgcctgagctcacccagcag 26972797
Query: 1059 gtcttcgatgccaag-acatgatggctgcctgtgacccccgcca 1101
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26972798 gtcttcgatgccaagaacatgatggctgcctgtgacccccgcca 26972841
Score = 581 bits (293), Expect = e-163
Identities = 546/629 (86%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| || || || || |||||||| ||||| ||||||
Sbjct: 1976314 ggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtcctg 1976255
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|| ||||| |||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct: 1976254 gacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacccac 1976195
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
|||||||| || ||||| ||||| || |||||||| ||||||| ||||||||||| ||
Sbjct: 1976194 tcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgcgag 1976135
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 713
|| || ||||||||||||||||| |||||||| ||| ||||||||||||| || || |||
Sbjct: 1976134 gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcggac 1976075
Query: 714 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 773
|| ||||| ||||||||||||||||||||||| || || ||| ||||||||||||| |||
Sbjct: 1976074 acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 1976015
Query: 774 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 833
|||||||||| ||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 1976014 gagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 1975955
Query: 834 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 893
|||||||| ||||| |||||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 1975954 accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 1975895
Query: 894 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 953
|| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 1975894 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 1975835
Query: 954 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 1013
||||||||||| || || |||||||||||||||||||| || || ||||||||||| ||
Sbjct: 1975834 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 1975775
Query: 1014 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 1073
|||||||||||||| || || || ||||| |||||||| |||||| | ||||| |||||
Sbjct: 1975774 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 1975715
Query: 1074 -acatgatggctgcctgtgacccccgcca 1101
|||||||||| ||||| ||||| |||||
Sbjct: 1975714 aacatgatggccgcctgcgacccgcgcca 1975686
Score = 581 bits (293), Expect = e-163
Identities = 546/629 (86%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| ||||| || || |||||||| ||||| ||||||
Sbjct: 2014796 ggcaacaactgggccaagggccactacacagagggcgccgagctggtggactcggtcctg 2014737
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|| ||||| |||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct: 2014736 gacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacccac 2014677
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
|||||||| || ||||| || || || |||||||| ||||||||||||||||||| ||
Sbjct: 2014676 tcgctggggggcggcacgggttcggggatgggcaccctgctcatcagcaagatccgcgag 2014617
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 713
|| || ||||||||||||||||| |||||||| ||| ||||||| ||||| || || |||
Sbjct: 2014616 gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcgcccaaggtctcggac 2014557
Query: 714 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 773
|| ||||| ||||||||||||||||||||||| || || ||| ||||||||||||| |||
Sbjct: 2014556 acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 2014497
Query: 774 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 833
|||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 2014496 gagacctattgcatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 2014437
Query: 834 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 893
|||||||| ||||| |||||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 2014436 accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 2014377
Query: 894 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 953
|| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 2014376 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 2014317
Query: 954 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 1013
||||||||||| || || |||||||||||||||||||| || || ||||||||||| ||
Sbjct: 2014316 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 2014257
Query: 1014 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 1073
|||||||||||||| || || || ||||| |||||||| |||||| | ||||| |||||
Sbjct: 2014256 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 2014197
Query: 1074 -acatgatggctgcctgtgacccccgcca 1101
|||||||||| ||||| ||||| |||||
Sbjct: 2014196 aacatgatggccgcctgcgacccgcgcca 2014168
Score = 466 bits (235), Expect = e-128
Identities = 238/239 (99%)
Strand = Plus / Plus
Query: 1 cctctcctttctccctctcagaaccttcctgccgccgtgttcggacctcgctgctccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26969811 cctctcctttctccctctcagaaccttcctgccgccgtgttcggacctcgctgctccagc 26969870
Query: 61 ctccggggcccgtcccatccttccagcctgcgaccgggagcagagaaaaccaaaattact 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 26969871 ctccggggcccgtcccatccttccagcctgcgaccgggagcagagaaaaacaaaattact 26969930
Query: 121 tatcattttcttgccccgtacacaccttgaggcgagcaaaaagattagaataaattttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26969931 tatcattttcttgccccgtacacaccttgaggcgagcaaaaagattagaataaattttaa 26969990
Query: 181 caatgagggaaatcgtgcatatccaggccggtcagtgtggcaaccagatcggtgccaag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26969991 caatgagggaaatcgtgcatatccaggccggtcagtgtggcaaccagatcggtgccaag 26970049
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26971435 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 26971494
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagccacaggtg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26971495 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagccacaggtg 26971548
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 347 aggtggcaaatatgttcctcgtgctatcttggtggatctagaacccgggactatggactc 406
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 26971811 aggtggcaaatatgttcctcgtgctatcttggtggatctagaacctgggactatggactc 26971870
Query: 407 tgttcgctcaggtcctttcggtcagatcttcagaccagacaactttgtttttggt 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26971871 tgttcgctcaggtcctttcggtcagatcttcagaccagacaactttgtttttggt 26971925
Score = 85.7 bits (43), Expect = 5e-14
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
|||| |||||||| ||||| || || ||||||||||||||||| |||| || ||||| |
Sbjct: 1987537 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 1987478
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagcc 344
|||||||| |||||||||| | ||| |||||||||||||||||||
Sbjct: 1987477 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagcc 1987431
Score = 83.8 bits (42), Expect = 2e-13
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
|||| |||||||| ||||| || || ||||||||||||||||| |||| || ||||| |
Sbjct: 2015626 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 2015567
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagccacaggtg 351
|||| ||| |||||||||| | ||| ||||||||||||||||||||| ||||
Sbjct: 2015566 acagtgacttgcagctggagaggatcaacgtgtactacaatgaagccactggtg 2015513
>Sscrofa_Chr01
|| Length = 315321322
Score = 591 bits (298), Expect = e-166
Identities = 545/626 (87%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 477 aacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctggat 536
||||||||||||||||| ||||| |||||||| || ||||| || ||||| || ||||||
Sbjct: 314136537 aacaactgggccaaggggcactacacagaaggcgcagagcttgtcgactcggtgctggat 314136478
Query: 537 gtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccactcg 596
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314136477 gtcgtgaggaaggaggcggagagctgtgactgcctgcagggcttccagctgacccactcg 314136418
Query: 597 ctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaagaa 656
||||| || || || || ||||| |||||||| ||||||||||||||||||| || ||
Sbjct: 314136417 ctgggtggggggaccgggtctgggatgggcaccctgctcatcagcaagatccgggaggag 314136358
Query: 657 tatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgacacc 716
|| ||||||||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 314136357 taccccgaccgcatcatgaacaccttcagcgtggtgccctcgcccaaggtgtcggacacg 314136298
Query: 717 gtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgatgag 776
||||| ||||||||||||||||||||||| || || ||| ||||||||||||| ||||||
Sbjct: 314136297 gtggtggagccctacaacgccaccctctccgtgcaccagctggtggagaacacggatgag 314136238
Query: 777 acctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctgacc 836
||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 314136237 acctactgcatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctgacc 314136178
Query: 837 acgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcaccacc 896
||||| ||||| |||||||| |||||||| || || ||||||||||| || |||||||||
Sbjct: 314136177 acgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcaccacc 314136118
Query: 897 tgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatggtg 956
||||| |||||||| ||||||||||| || || || ||||||||||| || || ||||||
Sbjct: 314136117 tgcctgcgcttccccggccagctcaacgccgatctgcgcaagctggctgtgaacatggtg 314136058
Query: 957 cccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtggaagc 1016
|||||||| || || |||||||||||||| ||||| || || ||||||||||| || |||
Sbjct: 314136057 cccttcccgcgcctgcacttcttcatgcctggcttcgcgccgctgaccagccgcggcagc 314135998
Query: 1017 cagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag-ac 1075
||||||||||| || || || ||||| |||||||| |||||| | ||||| |||||| ||
Sbjct: 314135997 cagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgacgccaagaac 314135938
Query: 1076 atgatggctgcctgtgacccccgcca 1101
|||||||| ||||| ||||| |||||
Sbjct: 314135937 atgatggccgcctgcgacccgcgcca 314135912
Score = 107 bits (54), Expect = 1e-20
Identities = 99/114 (86%)
Strand = Plus / Minus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
|||| |||||||||||||| || || ||||||||||| || ||||||||||| || ||||
Sbjct: 314137338 agttttgggaggtgatcagcgacgagcatggcatcgatcctaccggcacctaccacgggg 314137279
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagccacaggtg 351
||||||||||||||||||| || ||| |||||||||||| || ||||| ||||
Sbjct: 314137278 acagcgacctgcagctggagcggatcaacgtgtactacaacgaggccaccggtg 314137225
>Sscrofa_Chr06
|| Length = 157765593
Score = 589 bits (297), Expect = e-165
Identities = 547/629 (86%), Gaps = 1/629 (0%)
Strand = Plus / Plus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| || || || || |||||| | ||||||||||||
Sbjct: 90812916 ggcaacaactgggccaagggccactacacggagggtgcggagctgatggactcagtcctg 90812975
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|||||||| ||||||||| ||| ||| |||||||| |||||||||||||| ||||||
Sbjct: 90812976 gatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctcacccac 90813035
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 90813036 tcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatccgagag 90813095
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 713
|| | || || ||||||||||| |||||||| ||| ||||||||||||| ||||| |||
Sbjct: 90813096 gagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggtgtcagac 90813155
Query: 714 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 773
|| ||||| ||||||||||||||||| || || || || ||| ||||||||||||| |||
Sbjct: 90813156 acggtggtcgagccctacaacgccacgctgtccgtgcaccagctggtggagaacacggat 90813215
Query: 774 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 833
|||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||
Sbjct: 90813216 gagacctactgcatcgacaacgaggccctgtatgacatctgcttccgcaccctgaagctg 90813275
Query: 834 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 893
|||||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||||
Sbjct: 90813276 accacgcctacctacggggacctcaaccacctggtgtcggccaccatgagtggggtcacc 90813335
Query: 894 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 953
|||| ||| ||||| || ||||||||||| |||||||| ||||||||||| || || |||
Sbjct: 90813336 acctccctgcgctttccaggccagctcaacgctgacctgcgcaagctggctgtgaacatg 90813395
Query: 954 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 1013
|| ||||||||||| || |||||||||||||||||||| || || || ||| ||| ||
Sbjct: 90813396 gtccccttcccacgcctgcacttcttcatgcccggcttcgcgccgctaaccgcccggggc 90813455
Query: 1014 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 1073
|||||||||||||| ||||| || ||||| ||||||||||||||| | ||||||||||||
Sbjct: 90813456 agccagcagtaccgcgccctgacagtgccagagctcacccagcagatgttcgatgccaag 90813515
Query: 1074 -acatgatggctgcctgtgacccccgcca 1101
|||||||||| ||||| ||||| |||||
Sbjct: 90813516 aacatgatggccgcctgcgaccctcgcca 90813544
Score = 500 bits (252), Expect = e-139
Identities = 541/636 (85%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 467 tggggcaggcaacaactgggccaagggccactatacagaaggggctgagctggttgactc 526
|||||| ||||||||||||||||| || ||||| || || || || |||||||| |||||
Sbjct: 267339 tggggctggcaacaactgggccaaaggtcactacacggagggcgcggagctggtggactc 267398
Query: 527 agtcctggatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagct 586
|||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||
Sbjct: 267399 ggtcctggacgtggtgcggaaggagtgtgagaattgcgactgcctgcagggcttccagct 267458
Query: 587 gacccactcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagat 646
|||||||| ||||| || ||||| ||||| || |||||||| |||||||||||||| |
Sbjct: 267459 cacccactctctggggggcggcacgggctccgggatgggcaccctgctcatcagcaaggt 267518
Query: 647 ccgtgaagaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagt 706
||| || || || || |||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 267519 ccgcgaggagtaccctgaccgcatcatgaacaccttcagcgtggtgccctcgcccaaggt 267578
Query: 707 gtctgacaccgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaa 766
||| ||||| ||||| ||||||||||||||||| || || |||| ||| ||||||||||
Sbjct: 267579 gtcggacacggtggtcgagccctacaacgccacgctgtccatccaccagctggtggagaa 267638
Query: 767 cactgatgagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactct 826
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 267639 cacggacgagacctactgcatcgacaacgaggccctgtacgacatctgcttccgcaccct 267698
Query: 827 caagctgaccacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtgg 886
||||||| ||||||| ||||| |||||||| |||||||| || || ||||||||||| ||
Sbjct: 267699 caagctggccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcgg 267758
Query: 887 tgtcaccacctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagt 946
|||||||||| ||| |||||||| ||||||||||| || ||||| ||||||||||| ||
Sbjct: 267759 ggtcaccacctccctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgt 267818
Query: 947 caatatggtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccag 1006
|| |||||||||||||| || || |||||||||||||||||||| || || || ||
Sbjct: 267819 gaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcactgc 267878
Query: 1007 ccgtggaagccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcga 1066
||| || |||||||||||||| || || || ||||| |||||||| |||||| | |||||
Sbjct: 267879 ccggggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcga 267938
Query: 1067 tgccaag-acatgatggctgcctgtgacccccgcca 1101
|||||| |||||||||| ||||| ||||| |||||
Sbjct: 267939 cgccaagaacatgatggccgcctgcgacccgcgcca 267974
Score = 73.8 bits (37), Expect = 2e-10
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 183 atgagggaaatcgtgcatatccaggccggtcagtgtggcaaccagatcggtgccaag 239
|||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 259478 atgagggagatcgtgcacatccaggccggccagtgcggcaaccagatcggggccaag 259534
Score = 63.9 bits (32), Expect = 2e-07
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
|||||||||| |||||||| |||||||| ||||| ||||||| |||| |||| ||||
Sbjct: 265876 agttctgggaagtgatcagcgatgaacacggcatagaccccagtggcaactatgtggggg 265935
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaa 337
|| |||||||||||||| |||||| ||| ||||||||
Sbjct: 265936 actcggacctgcagctggagcgcatcagcgtctactacaa 265975
>Sscrofa_Chr02
|| Length = 162569375
Score = 565 bits (285), Expect = e-158
Identities = 544/629 (86%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| ||||| || || |||||||| ||| | || |||
Sbjct: 72986999 ggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggttctg 72986940
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 72986939 gacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacccac 72986880
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
||||||||||||||||| || || || ||||| || ||||||||||||||||||| ||
Sbjct: 72986879 tcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgcgag 72986820
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 713
|| | || ||||| |||||||| |||||||| || || ||||| ||||| |||||||||
Sbjct: 72986819 gagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtctgac 72986760
Query: 714 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 773
|| ||||| ||||||||||||||||| || || || || ||| ||||||||||||| |||
Sbjct: 72986759 acggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacggat 72986700
Query: 774 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 833
|||||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 72986699 gagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaagctg 72986640
Query: 834 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 893
||||| || ||||| || ||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 72986639 accacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtcacc 72986580
Query: 894 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 953
|| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 72986579 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 72986520
Query: 954 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 1013
||||||||||| || || |||||||||||||| |||||||| || ||||||||||| ||
Sbjct: 72986519 gtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccggggc 72986460
Query: 1014 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 1073
||||||||||||||||| || || ||||| || |||||||||||| | ||||| ||||||
Sbjct: 72986459 agccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgccaag 72986400
Query: 1074 -acatgatggctgcctgtgacccccgcca 1101
|||||||||| ||||| |||||||||||
Sbjct: 72986399 aacatgatggccgcctgcgacccccgcca 72986371
Score = 565 bits (285), Expect = e-158
Identities = 544/629 (86%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| ||||| || || |||||||| ||| | || |||
Sbjct: 73065516 ggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggttctg 73065457
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 73065456 gacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacccac 73065397
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
||||||||||||||||| || || || ||||| || ||||||||||||||||||| ||
Sbjct: 73065396 tcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgcgag 73065337
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 713
|| | || ||||| |||||||| |||||||| || || ||||| ||||| |||||||||
Sbjct: 73065336 gagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtctgac 73065277
Query: 714 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 773
|| ||||| ||||||||||||||||| || || || || ||| ||||||||||||| |||
Sbjct: 73065276 acggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacggat 73065217
Query: 774 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 833
|||||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 73065216 gagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaagctg 73065157
Query: 834 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 893
||||| || ||||| || ||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 73065156 accacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtcacc 73065097
Query: 894 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 953
|| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 73065096 acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 73065037
Query: 954 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 1013
||||||||||| || || |||||||||||||| |||||||| || ||||||||||| ||
Sbjct: 73065036 gtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccggggc 73064977
Query: 1014 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 1073
||||||||||||||||| || || ||||| || |||||||||||| | ||||| ||||||
Sbjct: 73064976 agccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgccaag 73064917
Query: 1074 -acatgatggctgcctgtgacccccgcca 1101
|||||||||| ||||| |||||||||||
Sbjct: 73064916 aacatgatggccgcctgcgacccccgcca 73064888
Score = 97.6 bits (49), Expect = 1e-17
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 238 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 297
|||| |||||||||||||||||||| |||||||| || ||||| ||||| || || ||||
Sbjct: 73084374 agttttgggaggtgatcagtgatgagcatggcattgatcccactggcacataccacgggg 73084315
Query: 298 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagccacaggt 350
|||||||||||||| |||| | ||| ||| ||||||||||| |||||||||
Sbjct: 73084314 acagcgacctgcagttggagaggatcaacgtctactacaatgaggccacaggt 73084262
>Sscrofa_Chr17
|| Length = 69701581
Score = 234 bits (118), Expect = 8e-59
Identities = 475/594 (79%)
Strand = Plus / Plus
Query: 465 tctggggcaggcaacaactgggccaagggccactatacagaaggggctgagctggttgac 524
|||||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||
Sbjct: 66536030 tctggggccggcaacaactgggccaagggccactacacggagggggccgagctggtggag 66536089
Query: 525 tcagtcctggatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccag 584
|| ||||| | || || | ||||| ||| |||| |||||||| ||||||||||||
Sbjct: 66536090 ggcgtgctggacgccgtgcgcagcgaggccgagggctgcgactgcctgcagggcttccag 66536149
Query: 585 ctgacccactcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaag 644
|| |||||||||||||| ||||| || || || |||||||| ||||||| |||||
Sbjct: 66536150 gtggtgcactcgctgggcggcggcacggggtccgggatgggcacgctgctcatgggcaag 66536209
Query: 645 atccgtgaagaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaa 704
||||| || || | || ||||||||| | || ||||||| ||| ||||||| ||||
Sbjct: 66536210 atccgcgaggagttcccggaccgcatcctcaactccttcagcgtcatgccctcggccaag 66536269
Query: 705 gtgtctgacaccgtggttgagccctacaacgccaccctctctgtccatcagttggtggag 764
||||| ||||| ||||| ||||||||||||||| || || |||| ||| || || ||
Sbjct: 66536270 gtgtcggacacggtggtggagccctacaacgccgtgctgtccatccaccagctgctgcag 66536329
Query: 765 aacactgatgagacctactgcatcgacaatgaggccctttacgacatctgcttccgcact 824
||| | || | || |||||||||||| ||||| || ||||||||||||| ||||||
Sbjct: 66536330 aacgccgacgcctgcttctgcatcgacaacgaggcgctctacgacatctgctgccgcacc 66536389
Query: 825 ctcaagctgaccacgccaacctatggggacctgaaccaccttgtctctgccaccatgagt 884
|| | |||||||||||| ||||| || ||||| |||||||| || || ||||||||
Sbjct: 66536390 ctgaggctgaccacgcccacctacggcgacctcaaccacctggtgtcgctgaccatgagc 66536449
Query: 885 ggtgtcaccacctgcctccgcttccctggccagctcaatgctgacctccgcaagctggca 944
|| |||||||| | || |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 66536450 ggcgtcaccacgtcgctgcgcttccccggccagctcaacgccgacctgcgcaagctggcc 66536509
Query: 945 gtcaatatggtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgacc 1004
|| || |||||||||||||| || || |||||||||||||||||||| || || || |||
Sbjct: 66536510 gtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcacc 66536569
Query: 1005 agccgtggaagccagcagtaccgggccctcactgtgcctgagctcacccagcag 1058
|| || |||||||||||||| || || || ||| | |||||||||||||||
Sbjct: 66536570 gcccagggcagccagcagtaccgcgcgctgaccgtggccgagctcacccagcag 66536623
>gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411
Length = 22714
Score = 230 bits (116), Expect = 1e-57
Identities = 206/236 (87%)
Strand = Plus / Minus
Query: 474 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 533
|||||||||||||||||||||||||| || || || || |||||| | ||||||||||||
Sbjct: 469 ggcaacaactgggccaagggccactacacggagggtgcggagctgatggactcagtcctg 410
Query: 534 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 593
|||||||| ||||||||| ||| ||| |||||||| |||||||||||||| ||||||
Sbjct: 409 gatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctcacccac 350
Query: 594 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 653
||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 349 tcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatccgagag 290
Query: 654 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtc 709
|| | || || ||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct: 289 gagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggtgtc 234
Score = 135 bits (68), Expect = 6e-29
Identities = 116/132 (87%)
Strand = Plus / Minus
Query: 859 accaccttgtctctgccaccatgagtggtgtcaccacctgcctccgcttccctggccagc 918
||||||| || || |||||||||||||| |||||||||| ||| ||||| || |||||||
Sbjct: 132 accacctggtgtcggccaccatgagtggggtcaccacctccctgcgctttccaggccagc 73
Query: 919 tcaatgctgacctccgcaagctggcagtcaatatggtgcccttcccacgtctccacttct 978
|||| |||||||| ||||||||||| || || ||||| ||||||||||| || |||||||
Sbjct: 72 tcaacgctgacctgcgcaagctggctgtgaacatggtccccttcccacgcctgcacttct 13
Query: 979 tcatgcccggct 990
||||||||||||
Sbjct: 12 tcatgcccggct 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,704,229
Number of extensions: 232
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 22
Length of query: 1108
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1087
Effective length of database: 2,808,413,156
Effective search space: 3052745100572
Effective search space used: 3052745100572
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)