Animal-Genome cDNA 20110601C-006971

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].     602   e-172
Alignment   gi|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].          602   e-172
Alignment   gi|NP_001003900.1| tubulin beta-2B chain [Bos taurus].               601   e-172
Alignment   gi|NP_001029835.1| tubulin beta-2C chain [Bos taurus].               590   e-169
Alignment   gi|NP_001040014.1| tubulin beta-5 chain [Bos taurus].                587   e-168
Alignment   gi|NP_001029869.1| tubulin beta-4 chain [Bos taurus].                586   e-167
Alignment   gi|NP_001039838.1| tubulin beta-6 chain [Bos taurus].                567   e-162
Alignment   gi|NP_001070595.1| tubulin beta-3 chain [Bos taurus].                565   e-161
Alignment   gi|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus].     550   e-157
Alignment   gi|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus].        550   e-157

>ref|XP_002697652.1| PREDICTED: tubulin, beta 2-like [Bos taurus].
          Length = 445

 Score =  602 bits (1553), Expect = e-172
 Identities = 296/315 (93%), Positives = 296/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_002703003.1| PREDICTED: tubulin, beta 2 [Bos taurus].
          Length = 445

 Score =  602 bits (1553), Expect = e-172
 Identities = 296/315 (93%), Positives = 296/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001003900.1| tubulin beta-2B chain [Bos taurus].
          Length = 445

 Score =  601 bits (1549), Expect = e-172
 Identities = 295/315 (93%), Positives = 295/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001029835.1| tubulin beta-2C chain [Bos taurus].
          Length = 445

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001040014.1| tubulin beta-5 chain [Bos taurus].
          Length = 444

 Score =  587 bits (1513), Expect = e-168
 Identities = 286/315 (90%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001029869.1| tubulin beta-4 chain [Bos taurus].
          Length = 444

 Score =  586 bits (1510), Expect = e-167
 Identities = 284/315 (90%), Positives = 292/315 (92%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G  YV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001039838.1| tubulin beta-6 chain [Bos taurus].
          Length = 446

 Score =  567 bits (1461), Expect = e-162
 Identities = 277/315 (87%), Positives = 284/315 (90%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQLERINVYYNE++  KYV
Sbjct: 1    MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E CDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001070595.1| tubulin beta-3 chain [Bos taurus].
          Length = 450

 Score =  565 bits (1456), Expect = e-161
 Identities = 274/314 (87%), Positives = 287/314 (91%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|XP_002698826.1| PREDICTED: tubulin, beta 5-like [Bos taurus].
          Length = 444

 Score =  550 bits (1418), Expect = e-157
 Identities = 271/315 (86%), Positives = 280/315 (88%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGID TG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE++SCDCLQGFQ                   KIREEYPD IMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_612678.3| PREDICTED: tubulin, beta 5-like [Bos taurus].
          Length = 444

 Score =  550 bits (1418), Expect = e-157
 Identities = 271/315 (86%), Positives = 280/315 (88%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGID TG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSV SGPFGQIFR DN VFGQSGA NNWAKGHY EGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE++SCDCLQGFQ                   KIREEYPD IMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALY ICFRTLKLTTPTYGDLN LVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADL KLAVNMVPFP LHFF+PGFAPLTS GSQQY ALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,385,438
Number of extensions: 986460
Number of successful extensions: 4402
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 35
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [...   599   e-171
Alignment   gi|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [...   599   e-171
Alignment   gi|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis fa...   592   e-169
Alignment   gi|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform ...   590   e-169
Alignment   gi|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform ...   590   e-169
Alignment   gi|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis fa...   587   e-168
Alignment   gi|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform ...   576   e-164
Alignment   gi|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1...   565   e-161
Alignment   gi|XP_850030.1| PREDICTED: similar to tubulin, beta 6 isoform 2...   565   e-161
Alignment   gi|XP_535868.2| PREDICTED: similar to tubulin, beta 2 [Canis fa...   564   e-161

>ref|XP_856242.1| PREDICTED: similar to tubulin, beta isoform 4 [Canis familiaris].
          Length = 445

 Score =  599 bits (1544), Expect = e-171
 Identities = 294/315 (93%), Positives = 294/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_848443.1| PREDICTED: similar to tubulin, beta isoform 1 [Canis familiaris].
          Length = 445

 Score =  599 bits (1544), Expect = e-171
 Identities = 294/315 (93%), Positives = 294/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_533934.2| PREDICTED: similar to tubulin, beta 4 [Canis familiaris].
          Length = 576

 Score =  592 bits (1525), Expect = e-169
 Identities = 288/327 (88%), Positives = 299/327 (91%)
 Frame = +1

Query: 49   RARASTSSAAGIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERIN 228
            RA A+ + +A  MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERIN
Sbjct: 121  RAAAAAAPSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERIN 180

Query: 229  VYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 408
            VYYNEA G  YVPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 181  VYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 240

Query: 409  GAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFS 588
            GAELVD+VLDVVRKE+ESCDCLQGFQ                   KIREE+PDRIMNTFS
Sbjct: 241  GAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFS 300

Query: 589  VMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHL 768
            V+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHL
Sbjct: 301  VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL 360

Query: 769  VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 948
            VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 361  VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 420

Query: 949  LTQQMFDSKNMMAACDPRHGRYLTVAA 1029
            LTQQMFD+KNMMAACDPRHGRYLTVAA
Sbjct: 421  LTQQMFDAKNMMAACDPRHGRYLTVAA 447


>ref|XP_856250.1| PREDICTED: similar to tubulin, beta, 2 isoform 3 [Canis familiaris].
          Length = 416

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_848461.1| PREDICTED: similar to tubulin, beta, 2 isoform 1 [Canis familiaris].
          Length = 445

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_532060.2| PREDICTED: similar to tubulin, beta 5 [Canis familiaris].
          Length = 444

 Score =  587 bits (1513), Expect = e-168
 Identities = 286/315 (90%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_856209.1| PREDICTED: similar to tubulin, beta, 2 isoform 2 [Canis familiaris].
          Length = 472

 Score =  576 bits (1484), Expect = e-164
 Identities = 287/342 (83%), Positives = 293/342 (85%), Gaps = 27/342 (7%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGN--- 255
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G    
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGETPR 60

Query: 256  ------------------------KYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFG 363
                                    KYVPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFG
Sbjct: 61   PFLNYFCVPSALRSLTSPSLPLGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFG 120

Query: 364  QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXX 543
            QSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGFQ                   
Sbjct: 121  QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 180

Query: 544  KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFR 723
            KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICFR
Sbjct: 181  KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 240

Query: 724  TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 903
            TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL
Sbjct: 241  TLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 300

Query: 904  TSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 1029
            TSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA
Sbjct: 301  TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 342


>ref|XP_536745.1| PREDICTED: similar to tubulin, beta 3 isoform 1 [Canis familiaris].
          Length = 450

 Score =  565 bits (1456), Expect = e-161
 Identities = 274/314 (87%), Positives = 287/314 (91%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|XP_850030.1| PREDICTED: similar to tubulin, beta 6 isoform 2 [Canis familiaris].
          Length = 446

 Score =  565 bits (1455), Expect = e-161
 Identities = 276/315 (87%), Positives = 284/315 (90%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQLERINVYYNE++  KYV
Sbjct: 1    MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSCGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61   PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E CDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_535868.2| PREDICTED: similar to tubulin, beta 2 [Canis familiaris].
          Length = 543

 Score =  564 bits (1454), Expect = e-161
 Identities = 277/297 (93%), Positives = 278/297 (93%)
 Frame = +1

Query: 139  KFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS 318
            +FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS
Sbjct: 117  QFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRS 176

Query: 319  GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXX 498
            GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQ    
Sbjct: 177  GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHS 236

Query: 499  XXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE 678
                           KIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE
Sbjct: 237  LGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE 296

Query: 679  TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 858
            TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV
Sbjct: 297  TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMV 356

Query: 859  PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 1029
            PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA
Sbjct: 357  PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 413


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,026,619
Number of extensions: 1023579
Number of successful extensions: 4724
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 4581
Number of HSP's successfully gapped: 97
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001060.1| tubulin beta-2A chain [Homo sapiens].                602   e-172
Alignment   gi|NP_821080.1| tubulin beta-2B chain [Homo sapiens].                599   e-171
Alignment   gi|NP_006079.1| tubulin beta-2C chain [Homo sapiens].                590   e-169
Alignment   gi|NP_821133.1| tubulin beta chain [Homo sapiens].                   587   e-168
Alignment   gi|NP_006078.2| tubulin beta-4 chain [Homo sapiens].                 586   e-167
Alignment   gi|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].       565   e-161
Alignment   gi|NP_115914.1| tubulin beta-6 chain [Homo sapiens].                 563   e-160
Alignment   gi|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].       550   e-156
Alignment   gi|NP_110400.1| tubulin beta-1 chain [Homo sapiens].                 503   e-143
Alignment   gi|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens].    430   e-121

>ref|NP_001060.1| tubulin beta-2A chain [Homo sapiens].
          Length = 445

 Score =  602 bits (1553), Expect = e-172
 Identities = 296/315 (93%), Positives = 296/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_821080.1| tubulin beta-2B chain [Homo sapiens].
          Length = 445

 Score =  599 bits (1544), Expect = e-171
 Identities = 294/315 (93%), Positives = 294/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_006079.1| tubulin beta-2C chain [Homo sapiens].
          Length = 445

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_821133.1| tubulin beta chain [Homo sapiens].
          Length = 444

 Score =  587 bits (1513), Expect = e-168
 Identities = 286/315 (90%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_006078.2| tubulin beta-4 chain [Homo sapiens].
          Length = 444

 Score =  586 bits (1510), Expect = e-167
 Identities = 284/315 (90%), Positives = 292/315 (92%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G  YV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_006077.2| tubulin beta-3 chain isoform 1 [Homo sapiens].
          Length = 450

 Score =  565 bits (1456), Expect = e-161
 Identities = 274/314 (87%), Positives = 287/314 (91%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|NP_115914.1| tubulin beta-6 chain [Homo sapiens].
          Length = 446

 Score =  563 bits (1450), Expect = e-160
 Identities = 274/314 (87%), Positives = 283/314 (90%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIG KFWEVISDEHGIDP G Y GDS LQLERINVYYNE++  KYV
Sbjct: 1    MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61   PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E CDCLQGFQ                   KIREE+PDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD++NMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|NP_817124.1| tubulin beta-8 chain isoform 1 [Homo sapiens].
          Length = 444

 Score =  550 bits (1416), Expect = e-156
 Identities = 264/315 (83%), Positives = 281/315 (89%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIV  Q GQCGNQIGAKFWEVISDEH ID  G+YHGDS LQLERINVYYNEA+G +YV
Sbjct: 1    MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQLERINVYYNEASGGRYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ GAGNNWAKGHYTEGAEL++SV+DVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRI+NTFS++PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQL+EN DET+ IDNEALYDIC +TLKL TPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV ELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLT AA
Sbjct: 301  AACDPRHGRYLTAAA 315


>ref|NP_110400.1| tubulin beta-1 chain [Homo sapiens].
          Length = 451

 Score =  503 bits (1296), Expect = e-143
 Identities = 245/314 (78%), Positives = 267/314 (85%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQ GQCGNQIGAKFWE+I +EHGID  GS  G S LQLERI+VYYNEA G KYV
Sbjct: 1    MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAGSDRGASALQLERISVYYNEAYGRKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDS+RS   G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++VL+VV
Sbjct: 61   PRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            R ESESCDCLQGFQ                   KIREEYPDRIMN+FSVMPSPKVSDTVV
Sbjct: 121  RHESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNA LS+HQL+EN D  + IDNEALYDICFRTLKLTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181  EPYNAVLSIHQLIENADACFCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGITTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQMFD++N M
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNTM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACD R GRYLTVA
Sbjct: 301  AACDLRRGRYLTVA 314


>ref|NP_001184110.1| tubulin beta-3 chain isoform 2 [Homo sapiens].
          Length = 378

 Score =  430 bits (1106), Expect = e-121
 Identities = 209/242 (86%), Positives = 217/242 (89%)
 Frame = +1

Query: 301  MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQG 480
            MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1    MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60

Query: 481  FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQL 660
            FQ                   K+REEYPDRIMNTFSV+PSPKVSDTVVEPYNATLS+HQL
Sbjct: 61   FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120

Query: 661  VENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 840
            VENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121  VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180

Query: 841  LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLT 1020
            LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLT
Sbjct: 181  LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 240

Query: 1021 VA 1026
            VA
Sbjct: 241  VA 242


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,064,270
Number of extensions: 988279
Number of successful extensions: 4193
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 28
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033476.1| tubulin beta-2A chain [Mus musculus].                602   e-172
Alignment   gi|NP_076205.1| tubulin beta-2B chain [Mus musculus].                599   e-171
Alignment   gi|NP_666228.1| tubulin beta-2C chain [Mus musculus].                590   e-169
Alignment   gi|NP_035785.1| tubulin beta-5 chain [Mus musculus].                 587   e-168
Alignment   gi|NP_033477.2| tubulin beta-4 chain [Mus musculus].                 586   e-167
Alignment   gi|NP_075768.1| tubulin beta-3 chain [Mus musculus].                 565   e-161
Alignment   gi|NP_080749.2| tubulin beta-6 chain [Mus musculus].                 560   e-160
Alignment   gi|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus mu...   529   e-150
Alignment   gi|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus mu...   528   e-150
Alignment   gi|NP_001074440.1| tubulin, beta 1 [Mus musculus].                   513   e-146

>ref|NP_033476.1| tubulin beta-2A chain [Mus musculus].
          Length = 445

 Score =  602 bits (1553), Expect = e-172
 Identities = 296/315 (93%), Positives = 296/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_076205.1| tubulin beta-2B chain [Mus musculus].
          Length = 445

 Score =  599 bits (1544), Expect = e-171
 Identities = 294/315 (93%), Positives = 294/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_666228.1| tubulin beta-2C chain [Mus musculus].
          Length = 445

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_035785.1| tubulin beta-5 chain [Mus musculus].
          Length = 444

 Score =  587 bits (1513), Expect = e-168
 Identities = 286/315 (90%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_033477.2| tubulin beta-4 chain [Mus musculus].
          Length = 444

 Score =  586 bits (1510), Expect = e-167
 Identities = 284/315 (90%), Positives = 292/315 (92%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G  YV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREE+PDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_075768.1| tubulin beta-3 chain [Mus musculus].
          Length = 450

 Score =  565 bits (1456), Expect = e-161
 Identities = 274/314 (87%), Positives = 287/314 (91%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDP+G+Y GDSDLQLERI+VYYNEA+ +KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLS+HQLVENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|NP_080749.2| tubulin beta-6 chain [Mus musculus].
          Length = 447

 Score =  560 bits (1444), Expect = e-160
 Identities = 274/314 (87%), Positives = 282/314 (89%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIG KFWEVISDEHGID  G Y GDS LQLERI+VYYNE++  KYV
Sbjct: 1    MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA LVDLEPGTMDSVRSGPFGQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE E CDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT L
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPRHGRYLTVA
Sbjct: 301  AACDPRHGRYLTVA 314


>ref|XP_003086598.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
          Length = 443

 Score =  529 bits (1362), Expect = e-150
 Identities = 258/314 (82%), Positives = 277/314 (88%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G+Y GDSDLQLERI++YYNEA+ +KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAI V LEPGTMDSVRSG FG +FRPDNF+F QSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61   PRAIRVYLEPGTMDSVRSGAFGHLFRPDNFIFDQSGTGNNWAKGHYREGAELEDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            +K+ E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  QKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLS+HQLVEN DETY IDNEALY ICFRT+KL TPT+GDLNHLVSATMSGVTT L
Sbjct: 175  EPYNATLSIHQLVENMDETYCIDNEALYYICFRTVKLATPTHGDLNHLVSATMSGVTTSL 234

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGF PLT+RGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 235  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFTPLTARGSQQYRALTVPELTQQMFDAKNMM 294

Query: 985  AACDPRHGRYLTVA 1026
            AACDP HGRYLTVA
Sbjct: 295  AACDPHHGRYLTVA 308


>ref|XP_003084702.1| PREDICTED: tubulin beta-3 chain-like [Mus musculus].
          Length = 443

 Score =  528 bits (1361), Expect = e-150
 Identities = 258/314 (82%), Positives = 277/314 (88%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISD+HGIDP+G+Y GDSDLQLERI++YYNEA+ +KY+
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDDHGIDPSGNYVGDSDLQLERISMYYNEASSHKYL 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILV LEPGTMDSVRSG FG +FRPDNF+FGQSG GNNWAKGHY EGAEL DSVLDVV
Sbjct: 61   PRAILVYLEPGTMDSVRSGAFGHLFRPDNFIFGQSGTGNNWAKGHYREGAELEDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RK+ E+CDCLQGFQ                   K+REEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKQCENCDCLQGFQLTHSLGGGTLLIS------KVREEYPDRIMNTFSVVPSPKVSDTVV 174

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNA+LS+HQLVEN DETY I+NEALYDICFRT+KL TPTYGDLNHLVSATMSGVTT L
Sbjct: 175  EPYNASLSIHQLVENMDETYCINNEALYDICFRTVKLATPTYGDLNHLVSATMSGVTTSL 234

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRK AVNM PFPRLHFFMPGFAPLT RGSQQYRALTVPELTQ MFD+KNMM
Sbjct: 235  RFPGQLNADLRKQAVNMXPFPRLHFFMPGFAPLTDRGSQQYRALTVPELTQXMFDAKNMM 294

Query: 985  AACDPRHGRYLTVA 1026
            AA DPRHGRYLTVA
Sbjct: 295  AAYDPRHGRYLTVA 308


>ref|NP_001074440.1| tubulin, beta 1 [Mus musculus].
          Length = 451

 Score =  513 bits (1321), Expect = e-146
 Identities = 247/314 (78%), Positives = 272/314 (86%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQ GQCGNQIGAKFWEVI +EHGID  GSY G S LQLERI+VYYNEA G KYV
Sbjct: 1    MREIVHIQIGQCGNQIGAKFWEVIGEEHGIDCAGSYCGTSALQLERISVYYNEAYGKKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDS+RS   G +F+PD+FV G SGAGNNWAKGHYTEGAEL+++V+DVV
Sbjct: 61   PRAVLVDLEPGTMDSIRSSRLGVLFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVMDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            R+ESESCDCLQGFQ                   KIREEYPDRI+N+FSVMPSPKVSDTVV
Sbjct: 121  RRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNA LS+HQL+ENTD  + IDNEALYDICFRTL+LTTPTYGDLNHLVS TMSG+TT L
Sbjct: 181  EPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRAL+V ELTQQMFD++N+M
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIM 300

Query: 985  AACDPRHGRYLTVA 1026
            AACDPR GRYLTVA
Sbjct: 301  AACDPRRGRYLTVA 314


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,320,637
Number of extensions: 813070
Number of successful extensions: 3340
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3248
Number of HSP's successfully gapped: 28
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].               599   e-172
Alignment   gi|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus s...   590   e-169
Alignment   gi|NP_001038077.1| tubulin beta chain [Sus scrofa].                  587   e-168
Alignment   gi|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus s...   407   e-151
Alignment   gi|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].                499   e-142
Alignment   gi|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus sc...   430   e-121
Alignment   gi|XP_003123158.2| PREDICTED: far upstream element-binding prot...   403   e-113
Alignment   gi|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partia...   398   e-111
Alignment   gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ...   266   2e-71
Alignment   gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].              265   3e-71

>ref|NP_001230363.1| tubulin beta-2B chain [Sus scrofa].
          Length = 445

 Score =  599 bits (1544), Expect = e-172
 Identities = 294/315 (93%), Positives = 294/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEA GNKYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKESESCDCLQGFQ                   KIREEYPDRIMNTFSVMPSPKVSDTVV
Sbjct: 121  RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_003122400.2| PREDICTED: tubulin beta-2C chain-like [Sus scrofa].
          Length = 445

 Score =  590 bits (1522), Expect = e-169
 Identities = 287/315 (91%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVH+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYV
Sbjct: 1    MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|NP_001038077.1| tubulin beta chain [Sus scrofa].
          Length = 444

 Score =  587 bits (1513), Expect = e-168
 Identities = 286/315 (90%), Positives = 293/315 (93%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQL+RI+VYYNEA G KYV
Sbjct: 1    MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61   PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121  RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNATLSVHQLVENTDETY IDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181  EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 985  AACDPRHGRYLTVAA 1029
            AACDPRHGRYLTVAA
Sbjct: 301  AACDPRHGRYLTVAA 315


>ref|XP_003356561.1| PREDICTED: tubulin beta-2A chain-like [Sus scrofa].
          Length = 416

 Score =  407 bits (1047), Expect(2) = e-151
 Identities = 202/221 (91%), Positives = 202/221 (91%)
 Frame = +1

Query: 367  SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXK 546
            SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQ                   K
Sbjct: 66   SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 125

Query: 547  IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT 726
            IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT
Sbjct: 126  IREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRT 185

Query: 727  LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 906
            LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT
Sbjct: 186  LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 245

Query: 907  SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 1029
            SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA
Sbjct: 246  SRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 286



 Score =  145 bits (366), Expect(2) = e-151
 Identities = 65/65 (100%), Positives = 65/65 (100%)
 Frame = +2

Query: 167 MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP 346
           MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP
Sbjct: 1   MASTPLAVTMATATCSWRGSTCTTMKPLVTSMCPGPSWWIWSRAPWTRSGLDPSARSSGP 60

Query: 347 TTLCS 361
           TTLCS
Sbjct: 61  TTLCS 65


>ref|NP_001107168.1| tubulin beta-1 chain [Sus scrofa].
          Length = 449

 Score =  499 bits (1286), Expect = e-142
 Identities = 241/314 (76%), Positives = 263/314 (83%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 264
            MREIVHIQ GQCGNQIG+KFWEVI +EHGID  GSY GD  +QLERI+VYYNEA G KYV
Sbjct: 1    MREIVHIQIGQCGNQIGSKFWEVIGEEHGIDGAGSYRGDCSVQLERISVYYNEAHGKKYV 60

Query: 265  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 444
            PRA+LVDLEPGTMDS+RS   G +FRPD+FV G SGAGNNWAKGHYTEGAELV+ VLD V
Sbjct: 61   PRAVLVDLEPGTMDSIRSSRLGALFRPDSFVHGNSGAGNNWAKGHYTEGAELVEGVLDAV 120

Query: 445  RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVV 624
            R E+E CDCLQGFQ                   KIREE+PDRI+N+FSVMPS KVSDTVV
Sbjct: 121  RSEAEGCDCLQGFQVVHSLGGGTGSGMGTLLMGKIREEFPDRILNSFSVMPSAKVSDTVV 180

Query: 625  EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 804
            EPYNA LS+HQL++N D  + IDNEALYDIC RTL+LTTPTYGDLNHLVS TMSGVTT L
Sbjct: 181  EPYNAVLSIHQLLQNADACFCIDNEALYDICCRTLRLTTPTYGDLNHLVSLTMSGVTTSL 240

Query: 805  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 984
            RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT++GSQQYRALTV ELTQQMFD++N M
Sbjct: 241  RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALTVAELTQQMFDARNTM 300

Query: 985  AACDPRHGRYLTVA 1026
             ACDPR GRYLTVA
Sbjct: 301  TACDPRRGRYLTVA 314


>ref|XP_003355769.1| PREDICTED: tubulin beta-3 chain-like [Sus scrofa].
          Length = 378

 Score =  430 bits (1106), Expect = e-121
 Identities = 209/242 (86%), Positives = 217/242 (89%)
 Frame = +1

Query: 301  MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQG 480
            MDSVRSG FG +FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE E+CDCLQG
Sbjct: 1    MDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQG 60

Query: 481  FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQL 660
            FQ                   K+REEYPDRIMNTFSV+PSPKVSDTVVEPYNATLS+HQL
Sbjct: 61   FQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQL 120

Query: 661  VENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 840
            VENTDETY IDNEALYDICFRTLKL TPTYGDLNHLVSATMSGVTT LRFPGQLNADLRK
Sbjct: 121  VENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRK 180

Query: 841  LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLT 1020
            LAVNMVPFPRLHFFMPGFAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLT
Sbjct: 181  LAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 240

Query: 1021 VA 1026
            VA
Sbjct: 241  VA 242


>ref|XP_003123158.2| PREDICTED: far upstream element-binding protein 2-like [Sus scrofa].
          Length = 930

 Score =  403 bits (1036), Expect = e-113
 Identities = 198/223 (88%), Positives = 203/223 (91%)
 Frame = +1

Query: 361  GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXX 540
            GQSGAGNNWAKGHYTEGAELVD+VLDVVRKE+ESCDCLQGFQ                  
Sbjct: 579  GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 638

Query: 541  XKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICF 720
             KIREE+PDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYDICF
Sbjct: 639  SKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 698

Query: 721  RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 900
            RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP
Sbjct: 699  RTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 758

Query: 901  LTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA 1029
            LTSRGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA
Sbjct: 759  LTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 801


>ref|XP_003356396.1| PREDICTED: tubulin beta-6 chain-like, partial [Sus scrofa].
          Length = 366

 Score =  398 bits (1023), Expect = e-111
 Identities = 196/225 (87%), Positives = 202/225 (89%)
 Frame = +1

Query: 352  FVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXX 531
            F+ GQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKESE CDCLQGFQ               
Sbjct: 10   FIPGQTGAGNNWAKGHYTEGAELMDSVLDVVRKESEHCDCLQGFQLTHSLGGGTGSGMGT 69

Query: 532  XXXXKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYD 711
                KIREE+PDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETY IDNEALYD
Sbjct: 70   LLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 129

Query: 712  ICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 891
            ICFRTLKLTTPTYGDLNHLVSATMSGVTT LRFPGQLNADLRKLAVNMVPFPRLHFFMPG
Sbjct: 130  ICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 189

Query: 892  FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVA 1026
            FAPLT+RGSQQYRALTVPELTQQMFD+KNMMAACDPRHGRYLTVA
Sbjct: 190  FAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVA 234


>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
          Length = 449

 Score =  266 bits (679), Expect = 2e-71
 Identities = 129/313 (41%), Positives = 184/313 (58%), Gaps = 2/313 (0%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 258
            MRE + I  GQ G QIG   WE+   EHGI P G    D  +    +  N +++E    K
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 259  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 438
            +VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 439  VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDT 618
             +RK ++ C  LQGF                    ++  +Y  +    FS+ P+P+VS  
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 619  VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 798
            VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +  PTY +LN L+S  +S +T 
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 799  CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 978
             LRF G LN DL +   N+VP+PR+HF +  +AP+ S     +  LTV E+T   F+  N
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 979  MMAACDPRHGRYL 1017
             M  CDPRHG+Y+
Sbjct: 301  QMVKCDPRHGKYM 313


>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
          Length = 451

 Score =  265 bits (677), Expect = 3e-71
 Identities = 128/313 (40%), Positives = 184/313 (58%), Gaps = 2/313 (0%)
 Frame = +1

Query: 85   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 258
            MRE + I  GQ G QIG   WE+   EHGI P G    D  +    +  N +++E    K
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 259  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 438
            +VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 439  VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVMPSPKVSDT 618
             +RK ++ C  LQGF                    ++  +Y  +    FS+ P+P+VS  
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 619  VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 798
            VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +  PTY +LN L+S  +S +T 
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 799  CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 978
             LRF G LN DL +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  N
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 979  MMAACDPRHGRYL 1017
             M  CDPRHG+Y+
Sbjct: 301  QMVKCDPRHGKYM 313


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,864,025
Number of extensions: 637536
Number of successful extensions: 2757
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2695
Number of HSP's successfully gapped: 29
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-006971
         (1031 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                        1330   0.0  
Sscrofa_Chr01                                                        1035   0.0  
Sscrofa_Chr06                                                         997   0.0  
Sscrofa_Chr02                                                         952   0.0  
Sscrofa_Chr17                                                         638   e-180
gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411      276   2e-71

>Sscrofa_Chr07 
||          Length = 134764511

 Score = 1330 bits (671), Expect = 0.0
 Identities = 671/671 (100%)
 Strand = Plus / Minus

                                                                           
Query: 361     ggccagagcggtgccggcaacaactgggccaagggccactacacggagggcgccgagctg 420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976329 ggccagagcggtgccggcaacaactgggccaagggccactacacggagggcgccgagctg 1976270

                                                                           
Query: 421     gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976269 gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 1976210

                                                                           
Query: 481     ttccagctgacccactcgctggggggcggcacgggctccgggatgggcaccctgctcatt 540
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976209 ttccagctgacccactcgctggggggcggcacgggctccgggatgggcaccctgctcatt 1976150

                                                                           
Query: 541     agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctca 600
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976149 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctca 1976090

                                                                           
Query: 601     cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 660
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976089 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 1976030

                                                                           
Query: 661     gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 720
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976029 gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 1975970

                                                                           
Query: 721     cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 780
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975969 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 1975910

                                                                           
Query: 781     atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 840
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975909 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 1975850

                                                                           
Query: 841     ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 900
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975849 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 1975790

                                                                           
Query: 901     ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 960
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975789 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 1975730

                                                                           
Query: 961     atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1020
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975729 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1975670

                          
Query: 1021    gtggccgccat 1031
               |||||||||||
Sbjct: 1975669 gtggccgccat 1975659



 Score = 1275 bits (643), Expect = 0.0
 Identities = 664/671 (98%)
 Strand = Plus / Minus

                                                                           
Query: 361     ggccagagcggtgccggcaacaactgggccaagggccactacacggagggcgccgagctg 420
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2014811 ggccagagcggtgccggcaacaactgggccaagggccactacacagagggcgccgagctg 2014752

                                                                           
Query: 421     gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014751 gtggactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggc 2014692

                                                                           
Query: 481     ttccagctgacccactcgctggggggcggcacgggctccgggatgggcaccctgctcatt 540
               ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| 
Sbjct: 2014691 ttccagctgacccactcgctggggggcggcacgggttcggggatgggcaccctgctcatc 2014632

                                                                           
Query: 541     agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctca 600
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 2014631 agcaagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcg 2014572

                                                                           
Query: 601     cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 660
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014571 cccaaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctg 2014512

                                                                           
Query: 661     gtggagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttc 720
               ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2014511 gtggagaacacggatgagacctattgcatcgacaacgaggccctgtacgacatctgcttc 2014452

                                                                           
Query: 721     cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 780
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014451 cgcaccctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccacc 2014392

                                                                           
Query: 781     atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 840
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014391 atgagcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaag 2014332

                                                                           
Query: 841     ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 900
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014331 ctggccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccg 2014272

                                                                           
Query: 901     ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 960
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014271 ctgaccagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcag 2014212

                                                                           
Query: 961     atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 1020
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014211 atgttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacg 2014152

                          
Query: 1021    gtggccgccat 1031
               |||||||||||
Sbjct: 2014151 gtggccgccat 2014141



 Score =  607 bits (306), Expect = e-171
 Identities = 564/650 (86%)
 Strand = Plus / Plus

                                                                            
Query: 376      ggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtcctg 435
                |||||||||||||||||||||||||| || || || || |||||||| ||||| ||||||
Sbjct: 26972213 ggcaacaactgggccaagggccactatacagaaggggctgagctggttgactcagtcctg 26972272

                                                                            
Query: 436      gacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacccac 495
                || |||||  |||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct: 26972273 gatgtggttcggaaggaggctgagagctgtgactgccttcagggcttccagctgacccac 26972332

                                                                            
Query: 496      tcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgcgag 555
                |||||||| || ||||| ||||| || ||||||||  ||||||| ||||||||||| || 
Sbjct: 26972333 tcgctgggcggtggcacaggctctggaatgggcactttgctcatcagcaagatccgtgaa 26972392

                                                                            
Query: 556      gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcggac 615
                || || ||||||||||||||||| |||||||| ||| ||||||||||||| || || |||
Sbjct: 26972393 gaatatcccgaccgcatcatgaataccttcagtgtcgtgccctcacccaaagtgtctgac 26972452

                                                                            
Query: 616      acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 675
                || ||||| ||||||||||||||||||||||| || || ||| ||||||||||||| |||
Sbjct: 26972453 accgtggttgagccctacaacgccaccctctctgtccatcagttggtggagaacactgat 26972512

                                                                            
Query: 676      gagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 735
                |||||||||| ||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 26972513 gagacctactgcatcgacaatgaggccctttacgacatctgcttccgcactctcaagctg 26972572

                                                                            
Query: 736      accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 795
                |||||||| ||||| |||||||| |||||||| || || ||||||||||| || ||||||
Sbjct: 26972573 accacgccaacctatggggacctgaaccaccttgtctctgccaccatgagtggtgtcacc 26972632

                                                                            
Query: 796      acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 855
                || ||||| |||||||| ||||||||||| || ||||| ||||||||||| || || |||
Sbjct: 26972633 acctgcctccgcttccctggccagctcaatgctgacctccgcaagctggcagtcaatatg 26972692

                                                                            
Query: 856      gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 915
                ||||||||||| || || |||||||||||||||||||| || || ||||||||||| || 
Sbjct: 26972693 gtgcccttcccacgtctccacttcttcatgcccggctttgcccctctgaccagccgtgga 26972752

                                                                            
Query: 916      agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 975
                |||||||||||||| || || || ||||| |||||||| |||||| | |||||  |||||
Sbjct: 26972753 agccagcagtaccgggccctcactgtgcctgagctcacccagcaggtcttcgatgccaag 26972812

                                                                  
Query: 976      aacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggc 1025
                ||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||
Sbjct: 26972813 aacatgatggctgcctgtgacccccgccatggccggtacctcactgtggc 26972862



 Score =  268 bits (135), Expect = 6e-69
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                           
Query: 7       aggtctctgcgtcggagtttgccggtctgccccacgcaattcagggcccgcgcttccacc 66
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978497 aggtctctgcgtcggagtttgccggtctgccccacgcaattcagggcccgcgcttccacc 1978438

                                                                           
Query: 67      agctccgcagccggcatcatgcgcgagatcgtgcacatccaggcgggccagtgcggcaac 126
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978437 agctccgcagccggcatcatgcgcgagatcgtgcacatccaggcgggccagtgcggcaac 1978378

                              
Query: 127     cagatcggcgccaag 141
               |||||||||||||||
Sbjct: 1978377 cagatcggcgccaag 1978363



 Score =  224 bits (113), Expect = 7e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                           
Query: 250     ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 309
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987122 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 1987063

                                                                    
Query: 310     gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgttcgg 362
               |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987062 gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgttcgg 1987010



 Score =  224 bits (113), Expect = 7e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                           
Query: 140     agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 199
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987537 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 1987478

                                                                    
Query: 200     acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 252
               |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987477 acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 1987425



 Score =  210 bits (106), Expect = 1e-51
 Identities = 109/110 (99%)
 Strand = Plus / Minus

                                                                           
Query: 250     ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 309
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015256 ggtaacaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcg 2015197

                                                                 
Query: 310     gtcaggtctggacccttcggccagatcttcaggcccgacaactttgtgtt 359
               |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2015196 gtcaggtctggacccttcggccagatcttcaggcccgacaacttcgtgtt 2015147



 Score =  208 bits (105), Expect = 4e-51
 Identities = 111/113 (98%)
 Strand = Plus / Minus

                                                                           
Query: 140     agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 199
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015626 agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 2015567

                                                                    
Query: 200     acagcgacttgcagctggagaggatcaacgtgtactacaatgaagccgctggt 252
               |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2015566 acagtgacttgcagctggagaggatcaacgtgtactacaatgaagccactggt 2015514



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                         
Query: 84      catgcgcgagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 141
               |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2016476 catgcgtgagatcgtgcacatccaggcgggccagtgcggcaatcagatcggcgccaag 2016419



 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 91/107 (85%)
 Strand = Plus / Plus

                                                                            
Query: 140      agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 199
                |||| |||||||| ||||| || || ||||||||||||||||| ||||  || ||||| |
Sbjct: 26971435 agttctgggaggtgatcagtgatgaacatggcatcgaccccaccggcacctatcatgggg 26971494

                                                               
Query: 200      acagcgacttgcagctggagaggatcaacgtgtactacaatgaagcc 246
                |||||||| ||||||||||  | |||  |||||||||||||||||||
Sbjct: 26971495 acagcgacctgcagctggaccgcatctccgtgtactacaatgaagcc 26971541


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1035 bits (522), Expect = 0.0
 Identities = 627/662 (94%)
 Strand = Plus / Minus

                                                                             
Query: 364       cagagcggtgccggcaacaactgggccaagggccactacacggagggcgccgagctggtg 423
                 ||||| |||||||| ||||||||||||||||| |||||||| || ||||| ||||| || 
Sbjct: 314136552 cagagtggtgccgggaacaactgggccaaggggcactacacagaaggcgcagagcttgtc 314136493

                                                                             
Query: 424       gactcggtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttc 483
                 |||||||| ||||| || || ||||||||| | |||||||||||||| ||||||||||||
Sbjct: 314136492 gactcggtgctggatgtcgtgaggaaggaggcggagagctgtgactgcctgcagggcttc 314136433

                                                                             
Query: 484       cagctgacccactcgctggggggcggcacgggctccgggatgggcaccctgctcattagc 543
                 |||||||||||||||||||| || || || || || |||||||||||||||||||| |||
Sbjct: 314136432 cagctgacccactcgctgggtggggggaccgggtctgggatgggcaccctgctcatcagc 314136373

                                                                             
Query: 544       aagatccgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcaccc 603
                 |||||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |||
Sbjct: 314136372 aagatccgggaggagtaccccgaccgcatcatgaacaccttcagcgtggtgccctcgccc 314136313

                                                                             
Query: 604       aaggtctcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtg 663
                 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 314136312 aaggtgtcggacacggtggtggagccctacaacgccaccctctccgtgcaccagctggtg 314136253

                                                                             
Query: 664       gagaacacggatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgc 723
                 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 314136252 gagaacacggatgagacctactgcatcgacaacgaggccctgtacgacatctgcttccgc 314136193

                                                                             
Query: 724       accctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatg 783
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314136192 accctgaagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatg 314136133

                                                                             
Query: 784       agcggggtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctg 843
                 |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 314136132 agcggggtcaccacctgcctgcgcttccccggccagctcaacgccgatctgcgcaagctg 314136073

                                                                             
Query: 844       gccgtgaacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctg 903
                 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314136072 gctgtgaacatggtgcccttcccgcgcctgcacttcttcatgcctggcttcgcgccgctg 314136013

                                                                             
Query: 904       accagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatg 963
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314136012 accagccgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatg 314135953

                                                                             
Query: 964       ttcgactccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtg 1023
                 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314135952 ttcgacgccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtg 314135893

                   
Query: 1024      gc 1025
                 ||
Sbjct: 314135892 gc 314135891



 Score =  119 bits (60), Expect = 3e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                             
Query: 140       agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 199
                 ||||||||||||| ||||||||||||||||||||||| || || ||||  ||||| || |
Sbjct: 314137338 agttttgggaggtgatcagcgacgagcatggcatcgatcctaccggcacctaccacgggg 314137279

                                                         
Query: 200       acagcgacttgcagctggagaggatcaacgtgtactacaa 239
                 |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 314137278 acagcgacctgcagctggagcggatcaacgtgtactacaa 314137239



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                    
Query: 91        gagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 141
                 |||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 314137676 gagatcgtgcacctgcaggccggccagtgcggcaaccagatcggcgccaag 314137626



 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                             
Query: 255       caagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcggtcag 314
                 |||||| ||||| || ||| | || ||||| || |||||||||||||||||||| ||  |
Sbjct: 314137147 caagtacgtgcctcgcgccgtgctcgtggaccttgagccgggcaccatggactccgtgcg 314137088

                                                                 
Query: 315       gtctggacccttcggccagatcttcaggcccgacaactttgtgttcgg 362
                  || || |||||||| |||||||||||||| |||||||| || |||||
Sbjct: 314137087 ctcggggcccttcgggcagatcttcaggccggacaacttcgtcttcgg 314137040


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  997 bits (503), Expect = 0.0
 Identities = 614/651 (94%)
 Strand = Plus / Plus

                                                                          
Query: 376    ggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtcctg 435
              ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 267346 ggcaacaactgggccaaaggtcactacacggagggcgcggagctggtggactcggtcctg 267405

                                                                          
Query: 436    gacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacccac 495
              ||||||||  |||||||||  ||||  || ||||| ||||||||||||||||| ||||||
Sbjct: 267406 gacgtggtgcggaaggagtgtgagaattgcgactgcctgcagggcttccagctcacccac 267465

                                                                          
Query: 496    tcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgcgag 555
              || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 267466 tctctggggggcggcacgggctccgggatgggcaccctgctcatcagcaaggtccgcgag 267525

                                                                          
Query: 556    gagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcggac 615
              |||||||| ||||||||||||||||||||||||||  ||||||| |||||||| ||||||
Sbjct: 267526 gagtaccctgaccgcatcatgaacaccttcagcgtggtgccctcgcccaaggtgtcggac 267585

                                                                          
Query: 616    acggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacggat 675
              |||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||| 
Sbjct: 267586 acggtggtcgagccctacaacgccacgctgtccatccaccagctggtggagaacacggac 267645

                                                                          
Query: 676    gagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaagctg 735
              |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267646 gagacctactgcatcgacaacgaggccctgtacgacatctgcttccgcaccctcaagctg 267705

                                                                          
Query: 736    accacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 795
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267706 gccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtcacc 267765

                                                                          
Query: 796    acgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 855
              || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267766 acctccctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaacatg 267825

                                                                          
Query: 856    gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgcggc 915
              ||||||||||||||||||||||||||||||||||||||||||||||| ||   ||| |||
Sbjct: 267826 gtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcactgcccggggc 267885

                                                                          
Query: 916    agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactccaag 975
              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267886 agccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgacgccaag 267945

                                                                 
Query: 976    aacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggcc 1026
              |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267946 aacatgatggccgcctgcgacccgcgccacggccgctacctgaccgtggcc 267996



 Score =  882 bits (445), Expect = 0.0
 Identities = 604/657 (91%)
 Strand = Plus / Plus

                                                                            
Query: 370      ggtgccggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcg 429
                ||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||| 
Sbjct: 90812910 ggtgctggcaacaactgggccaagggccactacacggagggtgcggagctgatggactca 90812969

                                                                            
Query: 430      gtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctg 489
                |||||||| |||||  ||||||||   |||  ||| ||||| ||||||||||||||||| 
Sbjct: 90812970 gtcctggatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctc 90813029

                                                                            
Query: 490      acccactcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatc 549
                |||||||||||||| || ||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 90813030 acccactcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatc 90813089

                                                                            
Query: 550      cgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtc 609
                || ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 90813090 cgagaggagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggtg 90813149

                                                                            
Query: 610      tcggacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaac 669
                || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 90813150 tcagacacggtggtcgagccctacaacgccacgctgtccgtgcaccagctggtggagaac 90813209

                                                                            
Query: 670      acggatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctg 729
                |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 90813210 acggatgagacctactgcatcgacaacgaggccctgtatgacatctgcttccgcaccctg 90813269

                                                                            
Query: 730      aagctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggg 789
                |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90813270 aagctgaccacgcctacctacggggacctcaaccacctggtgtcggccaccatgagtggg 90813329

                                                                            
Query: 790      gtcaccacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtg 849
                |||||||| | ||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 90813330 gtcaccacctccctgcgctttccaggccagctcaacgctgacctgcgcaagctggctgtg 90813389

                                                                            
Query: 850      aacatggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagc 909
                |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||  |
Sbjct: 90813390 aacatggtccccttcccacgcctgcacttcttcatgcccggcttcgcgccgctaaccgcc 90813449

                                                                            
Query: 910      cgcggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgac 969
                || |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| 
Sbjct: 90813450 cggggcagccagcagtaccgcgccctgacagtgccagagctcacccagcagatgttcgat 90813509

                                                                         
Query: 970      tccaagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggcc 1026
                 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 90813510 gccaagaacatgatggccgcctgcgaccctcgccacggccgctacctgaccgtggcc 90813566



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                          
Query: 254    acaagtatgtgccccgggccatcctggtggatctggagccgggcaccatggactcggtca 313
              ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||   ||| 
Sbjct: 266480 acaagtatgtgcctcgggccatcctggtggacctggagccggggaccatggacagcgtcc 266539

                                                      
Query: 314    ggtctggacccttcggccagatcttcaggcccgacaactt 353
              | |||||  ||||||| ||  |||||||||| ||||||||
Sbjct: 266540 gttctggggccttcgggcacctcttcaggcctgacaactt 266579



 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                                 
Query: 91     gagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaag 141
              |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 259484 gagatcgtgcacatccaggccggccagtgcggcaaccagatcggggccaag 259534


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  952 bits (480), Expect = 0.0
 Identities = 612/656 (93%)
 Strand = Plus / Minus

                                                                            
Query: 373      gccggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtc 432
                |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| 
Sbjct: 72987002 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggtt 72986943

                                                                            
Query: 433      ctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacc 492
                |||||||||||| |||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct: 72986942 ctggacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacc 72986883

                                                                            
Query: 493      cactcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgc 552
                ||||||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 72986882 cactcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgc 72986823

                                                                            
Query: 553      gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcg 612
                ||||||| ||| ||||| ||||||||||||||||||||  | ||||| |||||||| || 
Sbjct: 72986822 gaggagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtct 72986763

                                                                            
Query: 613      gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 672
                ||||||||||| ||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 72986762 gacacggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacg 72986703

                                                                            
Query: 673      gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 732
                ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 72986702 gatgagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaag 72986643

                                                                            
Query: 733      ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 792
                |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 72986642 ctgaccacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtc 72986583

                                                                            
Query: 793      accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 852
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72986582 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 72986523

                                                                            
Query: 853      atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 912
                |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| 
Sbjct: 72986522 atggtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccgg 72986463

                                                                            
Query: 913      ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 972
                ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 72986462 ggcagccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgcc 72986403

                                                                        
Query: 973      aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgc 1028
                |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 72986402 aagaacatgatggccgcctgcgacccccgccacggccgctacctgaccgtggccgc 72986347



 Score =  952 bits (480), Expect = 0.0
 Identities = 612/656 (93%)
 Strand = Plus / Minus

                                                                            
Query: 373      gccggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtc 432
                |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| 
Sbjct: 73065519 gccggcaacaactgggccaagggccactacacagagggcgccgagctggtggacgcggtt 73065460

                                                                            
Query: 433      ctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacc 492
                |||||||||||| |||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct: 73065459 ctggacgtggtccggaaggaggcggagagctgtgactgcctgcagggcttccaactgacc 73065400

                                                                            
Query: 493      cactcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgc 552
                ||||||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 73065399 cactcgctgggcggtggcacggggtccggcatggggaccctgctcatcagcaagatccgc 73065340

                                                                            
Query: 553      gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcg 612
                ||||||| ||| ||||| ||||||||||||||||||||  | ||||| |||||||| || 
Sbjct: 73065339 gaggagttcccggaccggatcatgaacaccttcagcgtggtaccctcccccaaggtgtct 73065280

                                                                            
Query: 613      gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 672
                ||||||||||| ||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 73065279 gacacggtggtggagccctacaacgccacgctgtcggttcaccagctggtggagaacacg 73065220

                                                                            
Query: 673      gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 732
                ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 73065219 gatgagacctactgcatcgacaacgaggcgctctacgacatctgcttccgcaccctgaag 73065160

                                                                            
Query: 733      ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 792
                |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 73065159 ctgaccacccccacctacggcgacctcaaccacctggtgtcggccaccatgagcggggtc 73065100

                                                                            
Query: 793      accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 852
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73065099 accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 73065040

                                                                            
Query: 853      atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 912
                |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| 
Sbjct: 73065039 atggtgcccttcccccgcctgcacttcttcatgccgggctttgcgccgctgaccagccgg 73064980

                                                                            
Query: 913      ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 972
                ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 73064979 ggcagccagcagtaccgggcactgacggtgcccgaactcacccagcagatgttcgacgcc 73064920

                                                                        
Query: 973      aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggccgc 1028
                |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 73064919 aagaacatgatggccgcctgcgacccccgccacggccgctacctgaccgtggccgc 73064864



 Score =  109 bits (55), Expect = 3e-21
 Identities = 91/103 (88%)
 Strand = Plus / Minus

                                                                            
Query: 140      agttttgggaggtcatcagcgacgagcatggcatcgaccccactggcagttaccatggcg 199
                ||||||||||||| ||||| || ||||||||||| || ||||||||||  ||||| || |
Sbjct: 73084374 agttttgggaggtgatcagtgatgagcatggcattgatcccactggcacataccacgggg 73084315

                                                           
Query: 200      acagcgacttgcagctggagaggatcaacgtgtactacaatga 242
                |||||||| ||||| |||||||||||||||| |||||||||||
Sbjct: 73084314 acagcgacctgcagttggagaggatcaacgtctactacaatga 73084272



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                            
Query: 277      ctggtggatctggagccgggcaccatggactcggtcaggtctggacccttcggccagatc 336
                |||||||| ||||||||||||||||||||||| ||| | || || ||||| |||||||||
Sbjct: 73084139 ctggtggacctggagccgggcaccatggactccgtccgctcaggtccctttggccagatc 73084080

                                       
Query: 337      ttcaggcccgacaactttgtgtt 359
                ||  | || ||||||||||||||
Sbjct: 73084079 tttcgacctgacaactttgtgtt 73084057



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                            
Query: 81       catcatgcgcgagatcgtgcacatccaggcgggccagtgcggcaaccagatcggcgccaa 140
                ||||||||| |||||||||||| | || || ||||||||||||||||||||||| |||||
Sbjct: 73084975 catcatgcgagagatcgtgcacctgcaagccggccagtgcggcaaccagatcggagccaa 73084916

                 
Query: 141      g 141
                |
Sbjct: 73084915 g 73084915



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 625      gagccctacaacgccaccctctccgtgcaccagctggtggagaacacggatgagaccta 683
                ||||||||||| ||||  ||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 96324987 gagccctacaatgccatactctcagtgcaccagctggtagaaaacacagatgagaccta 96325045



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 625      gagccctacaacgccaccctctccgtgcaccagctggtggagaacacggatgagaccta 683
                ||||||||||| ||||  ||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 96491357 gagccctacaatgccatactctcagtgcaccagctggtagaaaacacagatgagaccta 96491415


>Sscrofa_Chr17 
||          Length = 69701581

 Score =  638 bits (322), Expect = e-180
 Identities = 571/654 (87%)
 Strand = Plus / Plus

                                                                            
Query: 373      gccggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcggtc 432
                |||||||||||||||||||||||||||||||||||||| ||||||||||||||    || 
Sbjct: 66536036 gccggcaacaactgggccaagggccactacacggagggggccgagctggtggagggcgtg 66536095

                                                                            
Query: 433      ctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctgacc 492
                |||||||  ||  | |  ||| | ||| |||| ||||| ||||||||||||||| ||   
Sbjct: 66536096 ctggacgccgtgcgcagcgaggccgagggctgcgactgcctgcagggcttccaggtggtg 66536155

                                                                            
Query: 493      cactcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatccgc 552
                ||||||||||| ||||||||||| |||||||||||||| ||||||||  |||||||||||
Sbjct: 66536156 cactcgctgggcggcggcacggggtccgggatgggcacgctgctcatgggcaagatccgc 66536215

                                                                            
Query: 553      gaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggtctcg 612
                ||||||| ||| ||||||||| | ||| |||||||||||||||||||  ||||||| |||
Sbjct: 66536216 gaggagttcccggaccgcatcctcaactccttcagcgtcatgccctcggccaaggtgtcg 66536275

                                                                            
Query: 613      gacacggtggtcgagccctacaacgccaccctctccgtgcaccagctggtggagaacacg 672
                ||||||||||| |||||||||||||||   || ||| | ||||||||| || ||||| | 
Sbjct: 66536276 gacacggtggtggagccctacaacgccgtgctgtccatccaccagctgctgcagaacgcc 66536335

                                                                            
Query: 673      gatgagacctactccatcgacaacgaggccctgtacgacatctgcttccgcaccctgaag 732
                || |    || || ||||||||||||||| || ||||||||||||| ||||||||||| |
Sbjct: 66536336 gacgcctgcttctgcatcgacaacgaggcgctctacgacatctgctgccgcaccctgagg 66536395

                                                                            
Query: 733      ctgaccacgcccacctacggggacctcaaccacctggtgtcggccaccatgagcggggtc 792
                |||||||||||||||||||| |||||||||||||||||||||   ||||||||||| |||
Sbjct: 66536396 ctgaccacgcccacctacggcgacctcaaccacctggtgtcgctgaccatgagcggcgtc 66536455

                                                                            
Query: 793      accacgtgcctgcgcttcccgggccagctcaacgccgacctgcgcaagctggccgtgaac 852
                |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66536456 accacgtcgctgcgcttccccggccagctcaacgccgacctgcgcaagctggccgtgaac 66536515

                                                                            
Query: 853      atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctgaccagccgc 912
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||  
Sbjct: 66536516 atggtgcccttcccgcgcctgcacttcttcatgcccggcttcgcgccgctcaccgcccag 66536575

                                                                            
Query: 913      ggcagccagcagtaccgcgcgctgacggtgcccgagctcacgcagcagatgttcgactcc 972
                |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||
Sbjct: 66536576 ggcagccagcagtaccgcgcgctgaccgtggccgagctcacccagcagatgttcgacgcc 66536635

                                                                      
Query: 973      aagaacatgatggccgcctgcgacccgcgccacggccgctacctgacggtggcc 1026
                   ||||  ||| ||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 66536636 cgcaacaccatgaccgcctgcgacccccgccgcggccgctacctgaccgtggcc 66536689


>gb|GL895527.2| Sus scrofa unplaced genomic scaffold ChrUScaf3411
          Length = 22714

 Score =  276 bits (139), Expect = 2e-71
 Identities = 214/239 (89%)
 Strand = Plus / Minus

                                                                       
Query: 370 ggtgccggcaacaactgggccaagggccactacacggagggcgccgagctggtggactcg 429
           ||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||| 
Sbjct: 475 ggtgctggcaacaactgggccaagggccactacacggagggtgcggagctgatggactca 416

                                                                       
Query: 430 gtcctggacgtggtcaggaaggagtcagagagctgtgactgtctgcagggcttccagctg 489
           |||||||| |||||  ||||||||   |||  ||| ||||| ||||||||||||||||| 
Sbjct: 415 gtcctggatgtggtgcggaaggagagcgagcactgcgactgcctgcagggcttccagctc 356

                                                                       
Query: 490 acccactcgctggggggcggcacgggctccgggatgggcaccctgctcattagcaagatc 549
           |||||||||||||| || ||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 355 acccactcgctgggcggtggcacaggctccgggatgggcaccttgctcatcagcaagatc 296

                                                                      
Query: 550 cgcgaggagtaccccgaccgcatcatgaacaccttcagcgtcatgccctcacccaaggt 608
           || ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cgagaggagttccctgatcgcatcatgaacaccttcagcgtcatgccctcacccaaggt 237



 Score =  190 bits (96), Expect = 1e-45
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                       
Query: 761 accacctggtgtcggccaccatgagcggggtcaccacgtgcctgcgcttcccgggccagc 820
           ||||||||||||||||||||||||| ||||||||||| | ||||||||| || |||||||
Sbjct: 132 accacctggtgtcggccaccatgagtggggtcaccacctccctgcgctttccaggccagc 73

                                                                       
Query: 821 tcaacgccgacctgcgcaagctggccgtgaacatggtgcccttcccgcgcctgcacttct 880
           ||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 72  tcaacgctgacctgcgcaagctggctgtgaacatggtccccttcccacgcctgcacttct 13

                       
Query: 881 tcatgcccggct 892
           ||||||||||||
Sbjct: 12  tcatgcccggct 1


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,790,758
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 30
Length of query: 1031
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1010
Effective length of database: 2,808,413,156
Effective search space: 2836497287560
Effective search space used: 2836497287560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)