Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788817.1| cholesterol side-chain cleavage enzyme, mitocho... 484 0.0
Alignment gi|NP_777063.2| cytochrome P450 11B1, mitochondrial precursor [... 170 3e-55
Alignment gi|NP_001179213.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mit... 117 4e-37
Alignment gi|XP_002687602.1| PREDICTED: cytochrome P450, family 27, subfa... 117 4e-37
Alignment gi|XP_002692552.1| PREDICTED: cytochrome P450, family 24, subfa... 124 9e-34
Alignment gi|XP_002692553.1| PREDICTED: cytochrome P450, family 24, subfa... 124 9e-34
Alignment gi|XP_591370.3| PREDICTED: cytochrome P450, family 24, subfamil... 123 2e-33
Alignment gi|NP_001178346.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, m... 123 2e-33
Alignment gi|XP_002685263.1| PREDICTED: FLJ16008 protein-like [Bos taurus]. 92 2e-29
Alignment gi|XP_874669.3| PREDICTED: FLJ16008 protein-like [Bos taurus]. 92 2e-29
>ref|NP_788817.1| cholesterol side-chain cleavage enzyme, mitochondrial precursor
[Bos taurus].
Length = 520
Score = 484 bits (1246), Expect(2) = 0.0
Identities = 228/278 (82%), Positives = 253/278 (91%)
Frame = +1
Query: 79 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 258
MLARGL LRS LVK C P LS E GH RVGTGEGA ISTKTPRP+SEIPSPGDNGW+
Sbjct: 1 MLARGLPLRSALVKACPPILSTVGEGWGHHRVGTGEGAGISTKTPRPYSEIPSPGDNGWL 60
Query: 259 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 438
NLY FW+EKG+Q+IH+ H++NFQKYGPIYREKLGNLESVYII PEDVA LFKFEG PER
Sbjct: 61 NLYHFWREKGSQRIHFRHIENFQKYGPIYREKLGNLESVYIIHPEDVAHLFKFEGSYPER 120
Query: 439 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 618
Y+IPPW+AYH++YQKP+GVL KKSG WKKDR+VLNTEVMAPEAIKNFIPLL+ VSQDFV
Sbjct: 121 YDIPPWLAYHRYYQKPIGVLFKKSGTWKKDRVVLNTEVMAPEAIKNFIPLLNPVSQDFVS 180
Query: 619 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 798
+LH+RIKQQGSGKF GDI+EDLF FAFESITNV+FGERLGMLEE V+PEAQKFIDAVY+M
Sbjct: 181 LLHKRIKQQGSGKFVGDIKEDLFHFAFESITNVMFGERLGMLEETVNPEAQKFIDAVYKM 240
Query: 799 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
FHTSVP+LN+PP+L+RLFRTKTWRDHVAAWDTIFNKAE
Sbjct: 241 FHTSVPLLNVPPELYRLFRTKTWRDHVAAWDTIFNKAE 278
Score = 181 bits (459), Expect(2) = 0.0
Identities = 102/169 (60%), Positives = 120/169 (71%), Gaps = 4/169 (2%)
Frame = +2
Query: 890 TLFSIKLKIYPQNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTT 1069
T+F+ K + Y + FY DLRRK EF NYPGILY LL ++K+L EDVKAN+TEMLAGGV+TT
Sbjct: 272 TIFN-KAEKYTEIFYQDLRRKTEFRNYPGILYCLLKSEKMLLEDVKANITEMLAGGVNTT 330
Query: 1070 SMTLQWHLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXR----H*DS 1237
SMTLQWHLYEMARSLNVQEMLREEVL+ARRQA G+ S H S
Sbjct: 331 SMTLQWHLYEMARSLNVQEMLREEVLNARRQAEGDISKMLQMVPLLKASIKETLRLHPIS 390
Query: 1238 THLRDPAEVPRE*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
L+ P L + Y+IPAKTLVQVA+YAMGR+PAFFS+ +FDP
Sbjct: 391 VTLQ---RYPESDLVLQDYLIPAKTLVQVAIYAMGRDPAFFSSPDKFDP 436
>ref|NP_777063.2| cytochrome P450 11B1, mitochondrial precursor [Bos taurus].
Length = 503
Score = 170 bits (430), Expect(2) = 3e-55
Identities = 90/257 (35%), Positives = 140/257 (54%), Gaps = 4/257 (1%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G + K PF +P N W+ + + WKE+ ++ +H Q FQ+ GPI+R +G
Sbjct: 25 GTRGAAAPKAVLPFEAMPRCPGNKWMRMLQIWKEQSSENMHLDMHQTFQELGPIFRYDVG 84
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 540
V+++ PEDV L + + +P+R + PW+AY Q GV L W+ DRL L
Sbjct: 85 GRHMVFVMLPEDVERLQQADSHHPQRMILEPWLAYRQARGHKCGVFLLNGPQWRLDRLRL 144
Query: 541 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 720
N +V++ A++ + PL+D V++DF L R+ Q G + R LFR+ E+ T V+
Sbjct: 145 NPDVLSLPALQKYTPLVDGVARDFSQTLKARVLQNARGSLTLGHRAQLFRYTIEASTLVL 204
Query: 721 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 900
+GERLG+L + +P++ FI A+ M ++V ++ +P L R T WR+H AWD IF
Sbjct: 205 YGERLGLLTQQPNPDSLNFIHALEAMLKSTVQLMFVPRRLSRWMSTNMWREHFEAWDYIF 264
Query: 901 NKA----ENIPPELLLG 939
A + I EL LG
Sbjct: 265 QYANRAIQRIYQELALG 281
Score = 65.1 bits (157), Expect(2) = 3e-55
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Frame = +2
Query: 965 NYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREE- 1141
+Y GI+ LL + + +KAN ++ AG VDTT+ L L+E+AR+ VQ+ +R+E
Sbjct: 285 HYSGIVAELLMRADMTLDTIKANTIDLTAGSVDTTAFPLLMTLFELARNPEVQQAVRQES 344
Query: 1142 -VLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE*LGVSRYMIPAKTLV 1318
V AR + + + + EV + L + Y IPA TLV
Sbjct: 345 LVAEARISENPQRAITELPLLRAALKETLRLYPVGITLEREVSSD-LVLQNYHIPAGTLV 403
Query: 1319 QVAVYAMGREPAFFSNQXQFDP 1384
+V +Y++GR PA F+ + P
Sbjct: 404 KVLLYSLGRNPAVFARPESYHP 425
>ref|NP_001179213.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Bos
taurus].
Length = 508
Score = 117 bits (293), Expect(2) = 4e-37
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Frame = +1
Query: 166 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 345
P +G G+ S PR ++IP P G+ L + + G ++H VQ ++GP++
Sbjct: 18 PELGASLGSRGSESAPRVLADIPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVW 75
Query: 346 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 525
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 76 LASFGTVRTVYLAAPTLVEQLLRQEGPRPERCSFSPWTEHRRRRQRACGLLTAEGEEWQR 135
Query: 526 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFS--GDIREDLFRFAF 699
R +L ++ P+A + L V +D V L RR + G+G S D+ + ++F
Sbjct: 136 LRSLLAPLLLRPQAAARYAGTLHGVVRDLVRRL-RRQRGLGAGPPSLVRDVAGEFYKFGL 194
Query: 700 ESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 879
E I V+ G RLG LE V P+ + FI AV +F +++ + +P L R+ W
Sbjct: 195 EGIAAVLLGSRLGCLEAEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRVV-PGPWDRLC 253
Query: 880 AAWDTIFNKAE 912
WD +F A+
Sbjct: 254 RDWDQMFAFAQ 264
Score = 57.0 bits (136), Expect(2) = 4e-37
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Frame = +2
Query: 950 KREFNNYPG--ILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQ 1123
K E + PG + Y LL + L + + NVTE+L GVDT S TL W LYE++R +Q
Sbjct: 282 KSEEDMGPGAHLTYFLLQKE-LPAASILGNVTELLLAGVDTVSNTLSWALYELSRHPEIQ 340
Query: 1124 EMLREEVLHARRQAHG-EHSXXXXXXXXXXXXXXRH*DSTHLRDP--AEVPRE*LGVSRY 1294
L E+ A + S + + P + VP + V Y
Sbjct: 341 TALHAEITAALGPGSSTQPSATALSQLPLLKAVVKEVLRLYPVVPGNSRVPDRDICVGEY 400
Query: 1295 MIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
+IP TLV + YA R+PA F F P
Sbjct: 401 IIPKNTLVTLCHYATSRDPAQFPEPNSFRP 430
>ref|XP_002687602.1| PREDICTED: cytochrome P450, family 27, subfamily B, polypeptide 1
[Bos taurus].
Length = 508
Score = 117 bits (293), Expect(2) = 4e-37
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Frame = +1
Query: 166 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 345
P +G G+ S PR ++IP P G+ L + + G ++H VQ ++GP++
Sbjct: 18 PELGASLGSRGSESAPRVLADIPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVW 75
Query: 346 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 525
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 76 LASFGTVRTVYLAAPTLVEQLLRQEGPRPERCSFSPWTEHRRRRQRACGLLTAEGEEWQR 135
Query: 526 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFS--GDIREDLFRFAF 699
R +L ++ P+A + L V +D V L RR + G+G S D+ + ++F
Sbjct: 136 LRSLLAPLLLRPQAAARYAGTLHGVVRDLVRRL-RRQRGLGAGPPSLVRDVAGEFYKFGL 194
Query: 700 ESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 879
E I V+ G RLG LE V P+ + FI AV +F +++ + +P L R+ W
Sbjct: 195 EGIAAVLLGSRLGCLEAEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRVV-PGPWDRLC 253
Query: 880 AAWDTIFNKAE 912
WD +F A+
Sbjct: 254 RDWDQMFAFAQ 264
Score = 57.0 bits (136), Expect(2) = 4e-37
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Frame = +2
Query: 950 KREFNNYPG--ILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQ 1123
K E + PG + Y LL + L + + NVTE+L GVDT S TL W LYE++R +Q
Sbjct: 282 KSEEDMGPGAHLTYFLLQKE-LPAASILGNVTELLLAGVDTVSNTLSWALYELSRHPEIQ 340
Query: 1124 EMLREEVLHARRQAHG-EHSXXXXXXXXXXXXXXRH*DSTHLRDP--AEVPRE*LGVSRY 1294
L E+ A + S + + P + VP + V Y
Sbjct: 341 TALHAEITAALGPGSSTQPSATALSQLPLLKAVVKEVLRLYPVVPGNSRVPDRDICVGEY 400
Query: 1295 MIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
+IP TLV + YA R+PA F F P
Sbjct: 401 IIPKNTLVTLCHYATSRDPAQFPEPNSFRP 430
>ref|XP_002692552.1| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 1 [Bos taurus].
Length = 514
Score = 124 bits (311), Expect(2) = 9e-34
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 4/275 (1%)
Frame = +1
Query: 103 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 273
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 274 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 450
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 451 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 630
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 631 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 810
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 811 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
M+ P +L R T+ W+ H AWDTIF ++
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKS 284
Score = 38.9 bits (89), Expect(2) = 9e-34
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 947 RKREFNNYPGI--LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNV 1120
R +++ P + L + +++L +++ A VTE+ V+TT+ +L W LY ++R+ +V
Sbjct: 289 RLEKYSEQPSMDFLCDIYHHNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHV 348
Query: 1121 QEMLREEV 1144
Q+ L +E+
Sbjct: 349 QQKLFKEI 356
>ref|XP_002692553.1| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 2 [Bos taurus].
Length = 448
Score = 124 bits (311), Expect(2) = 9e-34
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 4/275 (1%)
Frame = +1
Query: 103 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 273
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 274 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 450
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 451 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 630
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 631 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 810
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 811 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
M+ P +L R T+ W+ H AWDTIF ++
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKS 284
Score = 38.9 bits (89), Expect(2) = 9e-34
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 947 RKREFNNYPGI--LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNV 1120
R +++ P + L + +++L +++ A VTE+ V+TT+ +L W LY ++R+ +V
Sbjct: 289 RLEKYSEQPSMDFLCDIYHHNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHV 348
Query: 1121 QEMLREEV 1144
Q+ L +E+
Sbjct: 349 QQKLFKEI 356
>ref|XP_591370.3| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 2 [Bos taurus].
Length = 514
Score = 123 bits (309), Expect(2) = 2e-33
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 4/275 (1%)
Frame = +1
Query: 103 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 273
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 274 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 450
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 451 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 630
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFPKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 631 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 810
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 811 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
M+ P +L R T+ W+ H AWDTIF ++
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKS 284
Score = 38.9 bits (89), Expect(2) = 2e-33
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 947 RKREFNNYPGI--LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNV 1120
R +++ P + L + +++L +++ A VTE+ V+TT+ +L W LY ++R+ +V
Sbjct: 289 RLEKYSEQPSMDFLCDIYHHNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHV 348
Query: 1121 QEMLREEV 1144
Q+ L +E+
Sbjct: 349 QQKLFKEI 356
>ref|NP_001178346.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial [Bos
taurus].
Length = 448
Score = 123 bits (309), Expect(2) = 2e-33
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 4/275 (1%)
Frame = +1
Query: 103 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 273
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 274 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 450
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 451 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 630
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFPKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 631 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 810
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 811 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
M+ P +L R T+ W+ H AWDTIF ++
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKS 284
Score = 38.9 bits (89), Expect(2) = 2e-33
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 947 RKREFNNYPGI--LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNV 1120
R +++ P + L + +++L +++ A VTE+ V+TT+ +L W LY ++R+ +V
Sbjct: 289 RLEKYSEQPSMDFLCDIYHHNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHV 348
Query: 1121 QEMLREEV 1144
Q+ L +E+
Sbjct: 349 QQKLFKEI 356
>ref|XP_002685263.1| PREDICTED: FLJ16008 protein-like [Bos taurus].
Length = 537
Score = 92.4 bits (228), Expect(2) = 2e-29
Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 2/230 (0%)
Frame = +1
Query: 217 PFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPED 396
P S PG NL F+ + G +IH ++ ++YG I++ G V + D +
Sbjct: 63 PRSLAAMPGPRTLANLVEFFGKDGFSRIHEIQQKHTREYGKIFKSHFGPQFVVSVADRDL 122
Query: 397 VALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKN 576
VA + + EG +P+R N+ W Y + G++ + W K R VL ++ P+ +
Sbjct: 123 VAQVLRAEGASPQRANMGSWQEYRDLRGRSTGLISAEGEQWLKMRSVLRQRILKPKDVAI 182
Query: 577 FIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIV 756
F ++ V D + ++ Q G +I + F+++ E + +++ RLG L +
Sbjct: 183 FAGEINQVIADLIKRIYFLKSQAEDGDTVTNINDLFFKYSMEGVATILYESRLGCLGNSI 242
Query: 757 DPEAQKFIDAVYQMFHTSVPML--NLPPDLFRLFRTKTWRDHVAAWDTIF 900
+I+A+ MF T + P RL K W++ +WD +F
Sbjct: 243 PQLTADYIEALALMFCTFKTSMYAGAIPRWLRLLIPKPWQEFCRSWDGLF 292
Score = 56.6 bits (135), Expect(2) = 2e-29
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHA 1153
G+L L + +L E++ AN+TEML GVDTTS TL W +Y +AR VQ+ L E++
Sbjct: 319 GLLTYLFLSQELTLEEIYANMTEMLLAGVDTTSFTLSWAVYLLARHPEVQQALYREIVRN 378
Query: 1154 RRQAHGEHSXXXXXXXXXXXXXXRH*D-STHLRDPAEVPRE*LGVSRYMIPAKTLVQVAV 1330
+ H + L V +E L V Y+IP T + +
Sbjct: 379 LGERHVPTAADVPKVPLVRALLKETLRLFPVLPGNGRVTQEDLIVGGYLIPRGTQLALCH 438
Query: 1331 YAMGREPAFFSNQXQFDP 1384
YA E F +F P
Sbjct: 439 YATSYEDENFPRAKEFRP 456
>ref|XP_874669.3| PREDICTED: FLJ16008 protein-like [Bos taurus].
Length = 537
Score = 92.4 bits (228), Expect(2) = 2e-29
Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 2/230 (0%)
Frame = +1
Query: 217 PFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPED 396
P S PG NL F+ + G +IH ++ ++YG I++ G V + D +
Sbjct: 63 PRSLAAMPGPRTLANLVEFFGKDGFSRIHEIQQKHTREYGKIFKSHFGPQFVVSVADRDL 122
Query: 397 VALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKN 576
VA + + EG +P+R N+ W Y + G++ + W K R VL ++ P+ +
Sbjct: 123 VAQVLRAEGASPQRANMGSWQEYRDLRGRSTGLISAEGEQWLKMRSVLRQRILKPKDVAI 182
Query: 577 FIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIV 756
F ++ V D + ++ Q G +I + F+++ E + +++ RLG L +
Sbjct: 183 FAGEINQVIADLIKRIYFLKSQAEDGDTVTNINDLFFKYSMEGVATILYESRLGCLGNSI 242
Query: 757 DPEAQKFIDAVYQMFHTSVPML--NLPPDLFRLFRTKTWRDHVAAWDTIF 900
+I+A+ MF T + P RL K W++ +WD +F
Sbjct: 243 PQLTADYIEALALMFCTFKTSMYAGAIPRWLRLLIPKPWQEFCRSWDGLF 292
Score = 56.6 bits (135), Expect(2) = 2e-29
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHA 1153
G+L L + +L E++ AN+TEML GVDTTS TL W +Y +AR VQ+ L E++
Sbjct: 319 GLLTYLFLSQELTLEEIYANMTEMLLAGVDTTSFTLSWAVYLLARHPEVQQALYREIVRN 378
Query: 1154 RRQAHGEHSXXXXXXXXXXXXXXRH*D-STHLRDPAEVPRE*LGVSRYMIPAKTLVQVAV 1330
+ H + L V +E L V Y+IP T + +
Sbjct: 379 LGERHVPTAADVPKVPLVRALLKETLRLFPVLPGNGRVTQEDLIVGGYLIPRGTQLALCH 438
Query: 1331 YAMGREPAFFSNQXQFDP 1384
YA E F +F P
Sbjct: 439 YATSYEDENFPRAKEFRP 456
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,141,450
Number of extensions: 1720181
Number of successful extensions: 6130
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6100
Number of HSP's successfully gapped: 30
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535539.2| PREDICTED: similar to Cytochrome P450 11A1, mit... 500 0.0
Alignment gi|XP_539192.2| PREDICTED: similar to Cytochrome P450 11B2, mit... 166 5e-41
Alignment gi|XP_538254.2| PREDICTED: similar to 25-hydroxyvitamin D-1 alp... 113 2e-37
Alignment gi|XP_543059.2| PREDICTED: similar to Cytochrome P450 24A1, mit... 121 8e-33
Alignment gi|XP_540989.2| PREDICTED: similar to cytochrome P450, family 2... 84 7e-27
Alignment gi|XP_853094.1| PREDICTED: similar to Cytochrome P450 27, mitoc... 86 2e-25
Alignment gi|XP_850626.1| PREDICTED: similar to cytochrome P450, subfamil... 61 3e-09
Alignment gi|XP_851388.1| PREDICTED: similar to cytochrome P450, family 1... 59 1e-08
>ref|XP_535539.2| PREDICTED: similar to Cytochrome P450 11A1, mitochondrial precursor
(CYPXIA1) (P450(scc)) (Cholesterol side-chain cleavage
enzyme) (Cholesterol desmolase) [Canis familiaris].
Length = 520
Score = 500 bits (1287), Expect(2) = 0.0
Identities = 238/278 (85%), Positives = 256/278 (92%)
Frame = +1
Query: 79 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 258
MLA+GL LRSVLVKGCQPFLS E PGHPRV TG+GA IST+ PRPFSEIP+PG+NGW+
Sbjct: 1 MLAKGLPLRSVLVKGCQPFLSTVWEGPGHPRVPTGDGASISTQIPRPFSEIPTPGNNGWL 60
Query: 259 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 438
NLY FW+E G+QKIHYH VQNFQKYGPIYREKLG++ESVYIIDPEDVALLFKFEGP PER
Sbjct: 61 NLYNFWREMGSQKIHYHQVQNFQKYGPIYREKLGSVESVYIIDPEDVALLFKFEGPTPER 120
Query: 439 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 618
+ IPPWVAYHQ++Q+PVGVLLKKSGAWKKDRL LN EVMAPEAIKNFIPLLD VSQDFV
Sbjct: 121 FCIPPWVAYHQYHQRPVGVLLKKSGAWKKDRLALNQEVMAPEAIKNFIPLLDPVSQDFVK 180
Query: 619 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 798
VLHRRIKQQGSGKFSGDI +DLFRFAFESITNV+FGERLGMLEE VDPEAQ+FIDAVYQM
Sbjct: 181 VLHRRIKQQGSGKFSGDISDDLFRFAFESITNVMFGERLGMLEERVDPEAQRFIDAVYQM 240
Query: 799 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
FHTSVPML PPDLFRLF+TKTWRDHVAAWD IFNKAE
Sbjct: 241 FHTSVPMLTFPPDLFRLFKTKTWRDHVAAWDVIFNKAE 278
Score = 179 bits (454), Expect(2) = 0.0
Identities = 99/164 (60%), Positives = 115/164 (70%), Gaps = 4/164 (2%)
Frame = +2
Query: 905 KLKIYPQNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQ 1084
K +IY QNFYW+LR+KR+ +NYPGIL+RLL ++KLL EDVKAN+TEMLAGGVDTTSMTLQ
Sbjct: 276 KAEIYTQNFYWELRQKRDVDNYPGILHRLLKSNKLLFEDVKANITEMLAGGVDTTSMTLQ 335
Query: 1085 WHLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXR----H*DSTHLRD 1252
WHLYEMARSL VQE+LREEVL ARRQA G S H S L+
Sbjct: 336 WHLYEMARSLEVQEVLREEVLAARRQAQGNVSTMLQLVPLLKASIKETLRLHPISVTLQR 395
Query: 1253 PAEVPRE*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
E L + YMIPAKTLVQV+ YAMG++P FF N +FDP
Sbjct: 396 YLE---NDLVLRNYMIPAKTLVQVSTYAMGQDPTFFLNPSKFDP 436
>ref|XP_539192.2| PREDICTED: similar to Cytochrome P450 11B2, mitochondrial precursor
(CYPXIB2) (P-450Aldo) (Aldosterone synthase) (ALDOS)
(Aldosterone-synthesizing enzyme) (Steroid
18-hydroxylase) (P-450C18) [Canis familiaris].
Length = 593
Score = 166 bits (420), Expect = 5e-41
Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 4/257 (1%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 115 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 174
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 540
V+++ PEDV L + E P P R + PW+AY QH GV L W+ +RL L
Sbjct: 175 GTHMVHVMLPEDVERLQRVESPQPWRPPLDPWLAYRQHRGHKCGVFLLNGPEWRLNRLKL 234
Query: 541 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 720
N +V++ +A++ +IP++D V++DF L R+ Q G + DIR + + E+ + +
Sbjct: 235 NPDVLSLQAVQKYIPMVDGVARDFSQALRARVLQNARGSLTLDIRPSILYYTVEASSLAL 294
Query: 721 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 900
FGERLG+L P + F+ A+ M ++ +L LP L R + W++H +WD I
Sbjct: 295 FGERLGLLGPSPSPASLHFLQALEAMLRSTAQLLYLPRGLSRWTSARVWKEHFESWDYIV 354
Query: 901 NKA----ENIPPELLLG 939
A + I EL LG
Sbjct: 355 QYANEAIQRIYQELALG 371
Score = 58.5 bits (140), Expect = 1e-08
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Frame = +2
Query: 923 QNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEM 1102
Q Y +L R +Y GI+ LL L E V+AN E+ AG VDTT+ L L+E+
Sbjct: 362 QRIYQELALGRP-QHYSGIVGELLLRADLSPEAVRANCIELTAGSVDTTAYPLWMTLFEL 420
Query: 1103 ARSLNVQEMLREEVLHARR--QAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE* 1276
AR+ +VQ LR+E A+ + + + + +V +
Sbjct: 421 ARNPDVQHALRQESQGAQAGIAENPQTAVTELPLLRAALKETLRLYPVGISVDRQVGSD- 479
Query: 1277 LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
+ + Y IPA TLV+V +Y++GR P+ F ++ P
Sbjct: 480 VVLQNYHIPAGTLVKVQLYSLGRNPSVFERPERYHP 515
>ref|XP_538254.2| PREDICTED: similar to 25-hydroxyvitamin D-1 alpha hydroxylase,
mitochondrial precursor (Calcidiol 1-monooxygenase)
(25-OHD-1 alpha-hydroxylase) (25-hydroxyvitamin D(3)
1-alpha-hydroxylase) (VD3 1A hydroxylase) (P450C1 alpha)
(P450VD1-alpha) [Canis familiaris].
Length = 535
Score = 113 bits (282), Expect(2) = 2e-37
Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 5/254 (1%)
Frame = +1
Query: 166 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 345
P++G+ G+ S PR ++IP P + L + + G ++H VQ ++GP++
Sbjct: 46 PKLGSSLGSRGSDSAPRSLADIPGPSTP--VFLAELFCKGGLSRLHELQVQGVARFGPVW 103
Query: 346 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 525
G + +VY+ P V L + EGP PER + PW + +H Q+ G+L + ++
Sbjct: 104 LASFGKVRTVYVAAPALVEQLLRQEGPRPERCSFSPWAEHRRHRQRACGLLTAEGEEGQR 163
Query: 526 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQ-----GSGKFSGDIREDLFR 690
R +L ++ P A + L V +D V RR++QQ G D+ + ++
Sbjct: 164 LRSLLAPLLLRPRAAARYAAPLADVVRDLV----RRLRQQRGRGAGPPALVRDVAAEFYK 219
Query: 691 FAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWR 870
F E V+ G RLG LE V P+ FI AV +F +++ + +P L RL W
Sbjct: 220 FGLEGTAAVLLGSRLGCLEAQVPPDTDAFIRAVGSVFVSTLLTMAMPGWLHRLV-PGPWG 278
Query: 871 DHVAAWDTIFNKAE 912
WD +F A+
Sbjct: 279 RLCRDWDQMFAFAQ 292
Score = 62.4 bits (150), Expect(2) = 2e-37
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Frame = +2
Query: 977 ILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHAR 1156
+ Y LL ++L + + NVTE+L GVDT S TL W LYE+AR +VQ L E+ A
Sbjct: 320 LTYFLL-REELPAPSILGNVTELLLAGVDTVSNTLSWALYELARHPDVQTALHSEITAAL 378
Query: 1157 RQAHGEH-SXXXXXXXXXXXXXXRH*DSTHLRDP--AEVPRE*LGVSRYMIPAKTLVQVA 1327
H S + + P + VP + + V Y+IP TLV +
Sbjct: 379 GPGSSAHPSAAALSQLPLLKAVVKEVLRLYPVVPGNSRVPDKDIRVGDYIIPKNTLVTLC 438
Query: 1328 VYAMGREPAFFSNQXQFDP 1384
YA R+PA F F P
Sbjct: 439 HYATSRDPAQFPEPNSFRP 457
>ref|XP_543059.2| PREDICTED: similar to Cytochrome P450 24A1, mitochondrial precursor
(P450-CC24) (Vitamin D(3) 24-hydroxylase)
(1,25-dihydroxyvitamin D(3) 24-hydroxylase) (24-OHase)
[Canis familiaris].
Length = 514
Score = 121 bits (303), Expect(2) = 8e-33
Identities = 83/271 (30%), Positives = 132/271 (48%)
Frame = +1
Query: 103 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKE 282
R V C P PRE P P V GE + R + P G L WK
Sbjct: 26 RPVASAACAP--PRPREVPLCPPVEPGEAQ--NAAALRGPTNWPLLGSL----LEILWKG 77
Query: 283 KGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVA 462
G +K H + +KYG I+R KLG+ +SV++ P + L++ E +P+R I PW A
Sbjct: 78 -GLKKQHDTLAEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIKPWKA 136
Query: 463 YHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQ 642
Y + ++ G+L+ + W++ R ++M P I ++ V DF+G + +
Sbjct: 137 YRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDNKINEVLADFMGRIDELCDE 196
Query: 643 QGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPML 822
+G + D+ +L +++FESI V++ +R G+L + EA FI A+ M T M+
Sbjct: 197 RGRIE---DLYSELNKWSFESICLVLYEKRFGLLRKNAGDEALNFIMAIKTMMSTFGRMM 253
Query: 823 NLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
P +L + TK W+ H AWDTIF ++
Sbjct: 254 VTPVELHKSLNTKVWQAHTLAWDTIFKSVKS 284
Score = 38.9 bits (89), Expect(2) = 8e-33
Identities = 17/49 (34%), Positives = 34/49 (69%)
Frame = +2
Query: 998 NDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV 1144
+++L +++ A VTE+ V+TT+ +L W LY ++R+ +VQ+ L +E+
Sbjct: 308 HNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHVQQKLLKEI 356
>ref|XP_540989.2| PREDICTED: similar to cytochrome P450, family 27, subfamily b,
polypeptide 1 [Canis familiaris].
Length = 490
Score = 84.3 bits (207), Expect(2) = 7e-27
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 24/245 (9%)
Frame = +1
Query: 238 PGDNGWINLYRFWKEKGTQKIHY---------------------HHVQNFQKYGPIYREK 354
PG NL F+ + G +IH H ++ ++YG I++
Sbjct: 2 PGPRTLANLVEFFWKDGFGRIHEIQDFGSSEAARCSASEGRGRPHSQKHTREYGKIFKSH 61
Query: 355 LGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRL 534
G V I D + VA + + EG P+R N+ W Y + G++ + W K R
Sbjct: 62 FGPQFVVSIADRDMVAQVLRAEGATPQRANMESWQEYRHLRGRSTGLISAEGEQWLKMRR 121
Query: 535 VLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITN 714
VL ++ P + F ++ V D + ++ Q G+ ++ E F+++ E +
Sbjct: 122 VLRQRILKPRDVAIFSGEINQVIADLIKRIYILKSQAEDGETVTNVNELFFKYSMEGVAT 181
Query: 715 VIFGERLGMLEEIVDPEAQKFIDA---VYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAA 885
+++ RLG LE V +I+A ++ MF TS+ P R K W + +
Sbjct: 182 ILYESRLGCLENSVPQPTVDYIEALGLMFSMFKTSM-YAGAIPRWLRPLIPKPWLEFCRS 240
Query: 886 WDTIF 900
WD +F
Sbjct: 241 WDGLF 245
Score = 55.8 bits (133), Expect(2) = 7e-27
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHA 1153
G+L L + +L E++ AN+TEML GVDTTS TL W +Y +AR VQ+ L +E++
Sbjct: 272 GLLTCLFLSQELTLEEIYANMTEMLLAGVDTTSFTLSWAVYLLARHPQVQQTLYQEIVKN 331
Query: 1154 RRQAHGEHSXXXXXXXXXXXXXXRH*D-STHLRDPAEVPRE*LGVSRYMIPAKTLVQVAV 1330
+ H + L V +E L V Y+IP T + +
Sbjct: 332 LGERHIPTAADVPKVPLVRALLKETLRLFPVLPGNGRVTQEDLVVGGYLIPKGTQLALCH 391
Query: 1331 YAMGREPAFFSNQXQFDP 1384
YA E F +F P
Sbjct: 392 YATSYEDENFPRAKEFWP 409
>ref|XP_853094.1| PREDICTED: similar to Cytochrome P450 27, mitochondrial precursor
(Cytochrome P-450C27/25) (Sterol 26-hydroxylase) (Sterol
27-hydroxylase) (Vitamin D(3) 25-hydroxylase)
(5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol
27-hydroxylase) [Canis familiaris].
Length = 528
Score = 86.3 bits (212), Expect(3) = 2e-25
Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 1/288 (0%)
Frame = +1
Query: 91 GLALRSVLVKGCQPF-LSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLY 267
GL R K P + A E PG+ G GA + R E+P PG + L+
Sbjct: 18 GLCPRGARAKAAIPAAVPATAETPGN-----GPGA----RRLRTLEELPGPGQLRF--LF 66
Query: 268 RFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNI 447
+ + ++H V N KYGP++ G V + + + + EG P R ++
Sbjct: 67 QLLGQGYVLQLHKLQVLNKAKYGPMWVTHAGPQTHVNLASAPLLEQVMRQEGKYPVRNDM 126
Query: 448 PPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLH 627
W + G + W + R LN ++ P + L+ V DF+ L
Sbjct: 127 ELWKEHRDQQGLAYGPFTTEGHHWYQLRHALNQRMLKPSEAALYTDALNEVVDDFMAHLS 186
Query: 628 RRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHT 807
+ + + SG D+ + FA E+I ++F +R+G LE + + F+ +V MF
Sbjct: 187 QLLAESPSGNQVSDMAHQFYYFALEAICYILFEKRIGCLERPIPQDTVAFVRSVGLMFQN 246
Query: 808 SVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAENIPPELLLGPETE 951
SV + LP L W+ ++ W+TIF+ + + + L ET+
Sbjct: 247 SVYVTFLPKWTRPLL--PFWKRYLDGWNTIFSFGKKLIDQKLKEIETQ 292
Score = 45.8 bits (107), Expect(3) = 2e-25
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVL 1147
G L+ LL +L + + ++ E+L GVDTTS T+ W LY ++++ +Q L +EV+
Sbjct: 305 GYLHFLLTRGQLSTREAMGSLPELLLAGVDTTSNTMTWALYHLSKNPEIQAALHKEVV 362
Score = 23.1 bits (48), Expect(3) = 2e-25
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1177 QQDAXIGPTPQASIKETLRLHP 1242
Q+D P +A +KETLRL+P
Sbjct: 373 QKDFAHMPLLKAVLKETLRLYP 394
>ref|XP_850626.1| PREDICTED: similar to cytochrome P450, subfamily XIB polypeptide 2
precursor, partial [Canis familiaris].
Length = 478
Score = 60.8 bits (146), Expect = 3e-09
Identities = 31/112 (27%), Positives = 57/112 (50%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 117 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 176
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGA 516
V+++ PE + L + E P P+ PW + P+G+LL G+
Sbjct: 177 GTHMVHVMLPEGMERLQRGESPQPD---TSPW-----GFGCPLGLLLALRGS 220
>ref|XP_851388.1| PREDICTED: similar to cytochrome P450, family 11, subfamily B,
polypeptide 1 isoform 1 precursor [Canis familiaris].
Length = 562
Score = 58.5 bits (140), Expect = 1e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 167 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 226
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPW 456
V+++ PE + L + E P P+ PW
Sbjct: 227 GTHMVHVMLPEGMERLQRGESPQPD---TSPW 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,604,771
Number of extensions: 1774087
Number of successful extensions: 5759
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5752
Number of HSP's successfully gapped: 24
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000772.2| cholesterol side-chain cleavage enzyme, mitocho... 483 e-178
Alignment gi|NP_001093243.1| cholesterol side-chain cleavage enzyme, mito... 214 2e-97
Alignment gi|NP_000488.3| cytochrome P450 11B1, mitochondrial isoform 1 p... 174 9e-58
Alignment gi|NP_000489.3| cytochrome P450 11B2, mitochondrial precursor [... 174 3e-57
Alignment gi|NP_001021384.1| cytochrome P450 11B1, mitochondrial isoform ... 174 8e-54
Alignment gi|NP_000776.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 104 2e-34
Alignment gi|NP_000773.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 125 4e-34
Alignment gi|NP_001122387.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, m... 125 4e-34
Alignment gi|NP_001001665.3| cytochrome P450 27C1 [Homo sapiens]. 53 5e-17
Alignment gi|NP_000775.1| sterol 26-hydroxylase, mitochondrial precursor ... 50 7e-07
>ref|NP_000772.2| cholesterol side-chain cleavage enzyme, mitochondrial isoform a
precursor [Homo sapiens].
Length = 521
Score = 483 bits (1242), Expect(2) = e-178
Identities = 226/278 (81%), Positives = 252/278 (90%)
Frame = +1
Query: 79 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 258
MLA+GL RSVLVKGCQ FLSAPRE G RV TGEGA IST++PRPF+EIPSPGDNGW+
Sbjct: 1 MLAKGLPPRSVLVKGCQTFLSAPREGLGRLRVPTGEGAGISTRSPRPFNEIPSPGDNGWL 60
Query: 259 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 438
NLY FW+E GT K+H HHVQNFQKYGPIYREKLGN+ESVY+IDPEDVALLFK EGPNPER
Sbjct: 61 NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPER 120
Query: 439 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 618
+ IPPWVAYHQ+YQ+P+GVLLKKS AWKKDR+ LN EVMAPEA KNF+PLLD VS+DFV
Sbjct: 121 FLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVS 180
Query: 619 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 798
VLHRRIK+ GSG +SGDI +DLFRFAFESITNVIFGER GMLEE+V+PEAQ+FIDA+YQM
Sbjct: 181 VLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQM 240
Query: 799 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
FHTSVPMLNLPPDLFRLFRTKTW+DHVAAWD IF+KA+
Sbjct: 241 FHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKAD 278
Score = 161 bits (407), Expect(2) = e-178
Identities = 92/166 (55%), Positives = 108/166 (65%), Gaps = 6/166 (3%)
Frame = +2
Query: 905 KLKIYPQNFYWDLRRKREFNN-YPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTL 1081
K IY QNFYW+LR+K ++ Y GILYRLLG+ K+ ED+KANVTEMLAGGVDTTSMTL
Sbjct: 276 KADIYTQNFYWELRQKGSVHHDYRGILYRLLGDSKMSFEDIKANVTEMLAGGVDTTSMTL 335
Query: 1082 QWHLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAE 1261
QWHLYEMAR+L VQ+MLR EVL AR QA G+ + T P
Sbjct: 336 QWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASI----KETLRLHPIS 391
Query: 1262 VPRE-----*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
V + L + YMIPAKTLVQVA+YA+GREP FF + FDP
Sbjct: 392 VTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDP 437
>ref|NP_001093243.1| cholesterol side-chain cleavage enzyme, mitochondrial isoform b
[Homo sapiens].
Length = 363
Score = 214 bits (545), Expect(2) = 2e-97
Identities = 100/120 (83%), Positives = 112/120 (93%)
Frame = +1
Query: 553 MAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGER 732
MAPEA KNF+PLLD VS+DFV VLHRRIK+ GSG +SGDI +DLFRFAFESITNVIFGER
Sbjct: 1 MAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGER 60
Query: 733 LGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
GMLEE+V+PEAQ+FIDA+YQMFHTSVPMLNLPPDLFRLFRTKTW+DHVAAWD IF+KA+
Sbjct: 61 QGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKAD 120
Score = 161 bits (407), Expect(2) = 2e-97
Identities = 92/166 (55%), Positives = 108/166 (65%), Gaps = 6/166 (3%)
Frame = +2
Query: 905 KLKIYPQNFYWDLRRKREFNN-YPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTL 1081
K IY QNFYW+LR+K ++ Y GILYRLLG+ K+ ED+KANVTEMLAGGVDTTSMTL
Sbjct: 118 KADIYTQNFYWELRQKGSVHHDYRGILYRLLGDSKMSFEDIKANVTEMLAGGVDTTSMTL 177
Query: 1082 QWHLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAE 1261
QWHLYEMAR+L VQ+MLR EVL AR QA G+ + T P
Sbjct: 178 QWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASI----KETLRLHPIS 233
Query: 1262 VPRE-----*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
V + L + YMIPAKTLVQVA+YA+GREP FF + FDP
Sbjct: 234 VTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDP 279
>ref|NP_000488.3| cytochrome P450 11B1, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 503
Score = 174 bits (442), Expect(2) = 9e-58
Identities = 84/245 (34%), Positives = 135/245 (55%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARVPRTVLPFEAMPRRPGNRWLRLLQIWREQGYEDLHLEVHQTFQELGPIFRYDLG 84
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 540
V ++ PEDV L + + +P R ++ PWVAY QH GV L W+ +RL L
Sbjct: 85 GAGMVCVMLPEDVEKLQQVDSLHPHRMSLEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 541 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 720
N EV++P A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPEVLSPNAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 721 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 900
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWTSPKVWKEHFEAWDCIF 264
Query: 901 NKAEN 915
+N
Sbjct: 265 QYGDN 269
Score = 68.9 bits (167), Expect(2) = 9e-58
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Frame = +2
Query: 923 QNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEM 1102
Q Y +L R Y I+ LL N +L + +KAN E+ AG VDTT L L+E+
Sbjct: 272 QKIYQELAFSRP-QQYTSIVAELLLNAELSPDAIKANSMELTAGSVDTTVFPLLMTLFEL 330
Query: 1103 ARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPA----EVPR 1270
AR+ NVQ+ LR+E L A + EH + ++ L V
Sbjct: 331 ARNPNVQQALRQESL-AAAASISEHPQKATTELPLLRAALK--ETLRLYPVGLFLERVAS 387
Query: 1271 E*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
L + Y IPA TLV+V +Y++GR PA F +++P
Sbjct: 388 SDLVLQNYHIPAGTLVRVFLYSLGRNPALFPRPERYNP 425
>ref|NP_000489.3| cytochrome P450 11B2, mitochondrial precursor [Homo sapiens].
Length = 503
Score = 174 bits (440), Expect(2) = 3e-57
Identities = 83/245 (33%), Positives = 136/245 (55%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A + +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARAPRTVLPFEAMPQHPGNRWLRLLQIWREQGYEHLHLEMHQTFQELGPIFRYNLG 84
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 540
V ++ PEDV L + + +P R + PWVAY QH GV L W+ +RL L
Sbjct: 85 GPRMVCVMLPEDVEKLQQVDSLHPCRMILEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 541 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 720
N +V++P+A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPDVLSPKAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 721 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 900
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWISPKVWKEHFEAWDCIF 264
Query: 901 NKAEN 915
+N
Sbjct: 265 QYGDN 269
Score = 68.2 bits (165), Expect(2) = 3e-57
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Frame = +2
Query: 923 QNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEM 1102
Q Y +L R +Y GI+ LL +L E +KAN E+ AG VDTT+ L L+E+
Sbjct: 272 QKIYQELAFNRP-QHYTGIVAELLLKAELSLEAIKANSMELTAGSVDTTAFPLLMTLFEL 330
Query: 1103 ARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPA----EVPR 1270
AR+ +VQ++LR+E L A + EH + ++ L V
Sbjct: 331 ARNPDVQQILRQESL-AAAASISEHPQKATTELPLLRAALK--ETLRLYPVGLFLERVVS 387
Query: 1271 E*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
L + Y IPA TLVQV +Y++GR A F +++P
Sbjct: 388 SDLVLQNYHIPAGTLVQVFLYSLGRNAALFPRPERYNP 425
>ref|NP_001021384.1| cytochrome P450 11B1, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 437
Score = 174 bits (442), Expect(3) = 8e-54
Identities = 84/245 (34%), Positives = 135/245 (55%)
Frame = +1
Query: 181 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 360
G A +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARVPRTVLPFEAMPRRPGNRWLRLLQIWREQGYEDLHLEVHQTFQELGPIFRYDLG 84
Query: 361 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 540
V ++ PEDV L + + +P R ++ PWVAY QH GV L W+ +RL L
Sbjct: 85 GAGMVCVMLPEDVEKLQQVDSLHPHRMSLEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 541 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 720
N EV++P A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPEVLSPNAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 721 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 900
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWTSPKVWKEHFEAWDCIF 264
Query: 901 NKAEN 915
+N
Sbjct: 265 QYGDN 269
Score = 53.5 bits (127), Expect(3) = 8e-54
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +2
Query: 923 QNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEM 1102
Q Y +L R Y I+ LL N +L + +KAN E+ AG VDTT L L+E+
Sbjct: 272 QKIYQELAFSRP-QQYTSIVAELLLNAELSPDAIKANSMELTAGSVDTTVFPLLMTLFEL 330
Query: 1103 ARSLNVQEMLREEVLHA 1153
AR+ NVQ+ LR+E L A
Sbjct: 331 ARNPNVQQALRQESLAA 347
Score = 23.1 bits (48), Expect(3) = 8e-54
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 1198 PTPQASIKETLRLHP 1242
P +A++KETLRL+P
Sbjct: 363 PLLRAALKETLRLYP 377
>ref|NP_000776.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Homo
sapiens].
Length = 508
Score = 104 bits (260), Expect(2) = 2e-34
Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
Frame = +1
Query: 166 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 345
P +G G R ++IP P + L + + G ++H VQ +GP++
Sbjct: 19 PELGASLGYREYHSARRSLADIPGPSTPSF--LAELFCKGGLSRLHELQVQGAAHFGPVW 76
Query: 346 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 525
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 77 LASFGTVRTVYVAAPALVEELLRQEGPRPERCSFSPWTEHRRCRQRACGLLTAEGEEWQR 136
Query: 526 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR-RIKQQGSGKFSGDIREDLFRFAFE 702
R +L ++ P+A + L+ V D V L R R + G D+ + ++F E
Sbjct: 137 LRSLLAPLLLRPQAAARYAGTLNNVVCDLVRRLRRQRGRGTGPPALVRDVAGEFYKFGLE 196
Query: 703 SITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVA 882
I V+ G RLG LE V P+ + FI AV +F +++ + +P L L W
Sbjct: 197 GIAAVLLGSRLGCLEAQVPPDTETFIRAVGSVFVSTLLTMAMPHWLRHLV-PGPWGRLCR 255
Query: 883 AWDTIFNKAE 912
WD +F A+
Sbjct: 256 DWDQMFAFAQ 265
Score = 60.8 bits (146), Expect(2) = 2e-34
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Frame = +2
Query: 980 LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHARR 1159
L L ++L ++ + NVTE+L GVDT S TL W LYE++R VQ L E+ A
Sbjct: 293 LTHFLFREELPAQSILGNVTELLLAGVDTVSNTLSWALYELSRHPEVQTALHSEITAALS 352
Query: 1160 QAHGEH-SXXXXXXXXXXXXXXRH*DSTHLRDP--AEVPRE*LGVSRYMIPAKTLVQVAV 1330
+ S + + P + VP + + V Y+IP TLV +
Sbjct: 353 PGSSAYPSATVLSQLPLLKAVVKEVLRLYPVVPGNSRVPDKDIHVGDYIIPKNTLVTLCH 412
Query: 1331 YAMGREPAFFSNQXQFDP 1384
YA R+PA F F P
Sbjct: 413 YATSRDPAQFPEPNSFRP 430
>ref|NP_000773.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 514
Score = 125 bits (315), Expect(2) = 4e-34
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 3/259 (1%)
Frame = +1
Query: 145 PRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI---NLYRFWKEKGTQKIHYHHV 315
PRE P P GE + PG W +L + + G +K H V
Sbjct: 38 PREVPVCPLTAGGETQ----------NAAALPGPTSWPLLGSLLQILWKGGLKKQHDTLV 87
Query: 316 QNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGV 495
+ +KYG I+R KLG+ ESV++ P + L++ E P+R I PW AY + ++ G+
Sbjct: 88 EYHKKYGKIFRMKLGSFESVHLGSPCLLEALYRTESAYPQRLEIKPWKAYRDYRKEGYGL 147
Query: 496 LLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIR 675
L+ + W++ R ++M P + ++ V DF+G + ++G + D+
Sbjct: 148 LILEGEDWQRVRSAFQKKLMKPGEVMKLDNKINEVLADFMGRIDELCDERGHVE---DLY 204
Query: 676 EDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFR 855
+L +++FESI V++ +R G+L++ EA FI A+ M T M+ P +L +
Sbjct: 205 SELNKWSFESICLVLYEKRFGLLQKNAGDEAVNFIMAIKTMMSTFGRMMVTPVELHKSLN 264
Query: 856 TKTWRDHVAAWDTIFNKAE 912
TK W+DH AWDTIF +
Sbjct: 265 TKVWQDHTLAWDTIFKSVK 283
Score = 38.5 bits (88), Expect(2) = 4e-34
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 1001 DKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV 1144
++L +++ A VTE+ V+TT+ +L W LY ++R+ VQ+ L +E+
Sbjct: 309 NRLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQVQQKLLKEI 356
>ref|NP_001122387.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 448
Score = 125 bits (315), Expect(2) = 4e-34
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 3/259 (1%)
Frame = +1
Query: 145 PRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI---NLYRFWKEKGTQKIHYHHV 315
PRE P P GE + PG W +L + + G +K H V
Sbjct: 38 PREVPVCPLTAGGETQ----------NAAALPGPTSWPLLGSLLQILWKGGLKKQHDTLV 87
Query: 316 QNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGV 495
+ +KYG I+R KLG+ ESV++ P + L++ E P+R I PW AY + ++ G+
Sbjct: 88 EYHKKYGKIFRMKLGSFESVHLGSPCLLEALYRTESAYPQRLEIKPWKAYRDYRKEGYGL 147
Query: 496 LLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIR 675
L+ + W++ R ++M P + ++ V DF+G + ++G + D+
Sbjct: 148 LILEGEDWQRVRSAFQKKLMKPGEVMKLDNKINEVLADFMGRIDELCDERGHVE---DLY 204
Query: 676 EDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFR 855
+L +++FESI V++ +R G+L++ EA FI A+ M T M+ P +L +
Sbjct: 205 SELNKWSFESICLVLYEKRFGLLQKNAGDEAVNFIMAIKTMMSTFGRMMVTPVELHKSLN 264
Query: 856 TKTWRDHVAAWDTIFNKAE 912
TK W+DH AWDTIF +
Sbjct: 265 TKVWQDHTLAWDTIFKSVK 283
Score = 38.5 bits (88), Expect(2) = 4e-34
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 1001 DKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV 1144
++L +++ A VTE+ V+TT+ +L W LY ++R+ VQ+ L +E+
Sbjct: 309 NRLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQVQQKLLKEI 356
>ref|NP_001001665.3| cytochrome P450 27C1 [Homo sapiens].
Length = 372
Score = 53.1 bits (126), Expect(3) = 5e-17
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHA 1153
G+L L + L +++ ANVTEML GVDTTS TL W +Y +AR VQ+ + E++
Sbjct: 154 GLLTYLFLSQALTLQEIYANVTEMLLAGVDTTSFTLSWTVYLLARHPEVQQTVYREIVKN 213
Query: 1154 RRQAH 1168
+ H
Sbjct: 214 LGERH 218
Score = 51.6 bits (122), Expect(3) = 5e-17
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +1
Query: 529 RLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESI 708
R VL ++ P+ + + ++ V D + ++ Q G+ ++ + F+++ E +
Sbjct: 2 RSVLRQRILKPKDVAIYSGEVNQVIADLIKRIYLLRSQAEDGETVTNVNDLFFKYSMEGV 61
Query: 709 TNVIFGERLGMLEEIVDPEAQKFIDAV---YQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 879
+++ RLG LE + ++I+A+ + MF TS+ +P L R F K WR+
Sbjct: 62 ATILYESRLGCLENSIPQLTVEYIEALELMFSMFKTSMYAGAIPRWL-RPFIPKPWREFC 120
Query: 880 AAWDTIF 900
+WD +F
Sbjct: 121 RSWDGLF 127
Score = 21.9 bits (45), Expect(3) = 5e-17
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 1174 TQQDAXIGPTPQASIKETLRLHP 1242
T D P +A +KETLRL P
Sbjct: 221 TAADVPKVPLVRALLKETLRLFP 243
>ref|NP_000775.1| sterol 26-hydroxylase, mitochondrial precursor [Homo sapiens].
Length = 531
Score = 50.4 bits (119), Expect(2) = 7e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVL 1147
G L+ LL + +L + ++ E+L GVDTTS TL W LY +++ +QE L EEV+
Sbjct: 309 GYLHFLLASGQLSPREAMGSLPELLMAGVDTTSNTLTWALYHLSKDPEIQEALHEEVV 366
Score = 21.9 bits (45), Expect(2) = 7e-07
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 1198 PTPQASIKETLRLHP 1242
P +A +KETLRL+P
Sbjct: 384 PLLKAVLKETLRLYP 398
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,383,798
Number of extensions: 1736021
Number of successful extensions: 5771
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5759
Number of HSP's successfully gapped: 35
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062753.3| cholesterol side-chain cleavage enzyme, mitocho... 446 e-167
Alignment gi|NP_001028401.2| cytochrome P450, family 11, subfamily b, pol... 168 8e-51
Alignment gi|NP_034121.3| cytochrome P450 11B2, mitochondrial [Mus muscul... 175 7e-44
Alignment gi|NP_034139.2| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 108 3e-36
Alignment gi|NP_034126.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 129 5e-36
Alignment gi|NP_077226.2| sterol 26-hydroxylase, mitochondrial [Mus muscu... 51 3e-07
>ref|NP_062753.3| cholesterol side-chain cleavage enzyme, mitochondrial precursor
[Mus musculus].
Length = 526
Score = 446 bits (1147), Expect(2) = e-167
Identities = 208/278 (74%), Positives = 242/278 (87%)
Frame = +1
Query: 79 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 258
MLA+GL+LRSVLVKGCQPFLS + P + TG+GA ST +PR F+EIPSPGDNGW+
Sbjct: 1 MLAKGLSLRSVLVKGCQPFLSPTWQ---GPVLSTGKGAGTSTSSPRSFNEIPSPGDNGWL 57
Query: 259 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 438
NLY FW+E GTQKIHYH +Q+FQKYGPIYREKLG LESVYI+DP+D ++LF EGPNPER
Sbjct: 58 NLYHFWRESGTQKIHYHQMQSFQKYGPIYREKLGTLESVYIVDPKDASILFSCEGPNPER 117
Query: 439 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 618
+ +PPWVAYHQ+YQ+P+GVL K S AWKKDR+VLN EVMAP AIKNF+PLL+ V+QDF+
Sbjct: 118 FLVPPWVAYHQYYQRPIGVLFKSSDAWKKDRIVLNQEVMAPGAIKNFVPLLEGVAQDFIK 177
Query: 619 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 798
VLHRRIKQQ SG FSG I +DLFRF+FESI++VIFGER+GMLEEIVDPEAQ+FI+AVYQM
Sbjct: 178 VLHRRIKQQNSGNFSGVISDDLFRFSFESISSVIFGERMGMLEEIVDPEAQRFINAVYQM 237
Query: 799 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
FHTSVPMLNLPPD FRL RTKTW+DH AAWD IFNKA+
Sbjct: 238 FHTSVPMLNLPPDFFRLLRTKTWKDHAAAWDVIFNKAD 275
Score = 162 bits (411), Expect(2) = e-167
Identities = 88/161 (54%), Positives = 107/161 (66%), Gaps = 5/161 (3%)
Frame = +2
Query: 917 YPQNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLY 1096
Y QNFYWDLR+KR+F+ YPG+LY LLG +KL ++++AN+TEMLAGGVDTTSMTLQW+LY
Sbjct: 277 YTQNFYWDLRQKRDFSQYPGVLYSLLGGNKLPFKNIQANITEMLAGGVDTTSMTLQWNLY 336
Query: 1097 EMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE* 1276
EMA +L VQEMLR EVL ARRQA G+ + T P V +
Sbjct: 337 EMAHNLKVQEMLRAEVLAARRQAQGDMAKMVQLVPLLKASI----KETLRLHPISVTLQR 392
Query: 1277 LGVS-----RYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
V+ Y IPAKTLVQVA +AMGR+P FF N +FDP
Sbjct: 393 YTVNDLVLRNYKIPAKTLVQVASFAMGRDPGFFPNPNKFDP 433
>ref|NP_001028401.2| cytochrome P450, family 11, subfamily b, polypeptide 1 [Mus
musculus].
Length = 501
Score = 168 bits (425), Expect(2) = 8e-51
Identities = 82/255 (32%), Positives = 145/255 (56%)
Frame = +1
Query: 133 FLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHH 312
+L+ P +C R G A ++ KT +PF IP N W+ + + +E+G + +H
Sbjct: 12 WLARPWQCLHRTRA-LGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEM 70
Query: 313 VQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVG 492
Q F++ GPI+R +G + V++ PEDV L++ E +P R + W+ + + G
Sbjct: 71 HQVFRELGPIFRHSVGKTQIVFVTLPEDVEKLYQVESTHPCRMPLESWIVHRELRGLGRG 130
Query: 493 VLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDI 672
V L W +RL LN V++P+A++ F+PL+D +++DFV L +++ + G FS D
Sbjct: 131 VFLLNGPEWYFNRLQLNPNVLSPKAVQKFVPLVDGIARDFVDNLKKKMLESVHGSFSMDF 190
Query: 673 REDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLF 852
+ +F + E+ V+FGERLG++ + P++ KF+ ++ MF T+ +L LP L R
Sbjct: 191 QSSVFNYTIEASHFVLFGERLGLIGRDLSPDSLKFLHTLHSMFKTTTQLLYLPRSLTRWT 250
Query: 853 RTKTWRDHVAAWDTI 897
T+ W++++ +WD I
Sbjct: 251 STRVWKENLESWDFI 265
Score = 52.0 bits (123), Expect(2) = 8e-51
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Frame = +2
Query: 1001 DKLLSED-VKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHARRQAHGE- 1174
++ LS D ++AN E++AG DTTS L +E+AR+ +VQ+ LR+E L A
Sbjct: 297 ERTLSMDAIQANSMELIAGSTDTTSTPLVMTFFELARNPDVQQALRQESLAAEASIAANP 356
Query: 1175 ---HSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE*LGVSRYMIPAKTLVQVAVYAMGR 1345
S + T L + L + Y +PA T++ V +Y+MGR
Sbjct: 357 QKAMSDLPLLRAALKETLRLYPVGTFLE---RILSSDLVLQNYHVPAGTVLNVNLYSMGR 413
Query: 1346 EPAFFSNQXQFDP 1384
PA F ++ P
Sbjct: 414 NPAVFPRPERYMP 426
>ref|NP_034121.3| cytochrome P450 11B2, mitochondrial [Mus musculus].
Length = 502
Score = 175 bits (444), Expect = 7e-44
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 4/273 (1%)
Frame = +1
Query: 133 FLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHH 312
+L+ P +C R G A ++ KT +PF IP N W+ + + +E+G + +H
Sbjct: 12 WLARPWQCLHRTRA-LGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEM 70
Query: 313 VQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVG 492
Q F++ GPI+R +G + V ++ PED L + E P R ++ PWVA+ + G
Sbjct: 71 HQVFRELGPIFRHSVGKTQIVSVMLPEDAEKLHQVESMLPRRMHLEPWVAHRELRGLRRG 130
Query: 493 VLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDI 672
V L W+ +RL LN V++P+A++ F+P++D V++DF+ L ++ Q G + D+
Sbjct: 131 VFLLNGPEWRLNRLRLNRNVLSPKAVQKFVPMVDMVARDFLETLKEKVLQNARGSLTMDV 190
Query: 673 REDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLF 852
++ LF + E+ +FGERLG+L + P + KFI A++ MF ++ +L LP L R
Sbjct: 191 QQSLFNYTIEASNFALFGERLGLLGHDLSPGSLKFIHALHSMFKSTSQLLFLPKSLTRWT 250
Query: 853 RTKTWRDHVAAWDTIFNKAE----NIPPELLLG 939
T+ W++H AWD I A + EL LG
Sbjct: 251 STRVWKEHFDAWDVISEYANRCIWKVHQELRLG 283
Score = 60.1 bits (144), Expect = 4e-09
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Frame = +2
Query: 917 YPQNFYWDLRRKREFNN---YPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQW 1087
Y W + ++ + Y GI+ L+ L + +KAN E+ AG VDTT++ L
Sbjct: 268 YANRCIWKVHQELRLGSSQTYSGIVAELISQGSLPLDAIKANSMELTAGSVDTTAIPLVM 327
Query: 1088 HLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPA--- 1258
L+E+AR+ +VQ+ LR+E L A ++ L
Sbjct: 328 TLFELARNPDVQKALRQESLAAEASIAANPQKAMSDLPLLRAALK---ETLRLYPVGGFL 384
Query: 1259 -EVPRE*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
+ L + Y +PA TLV + +Y+MGR PA F ++ P
Sbjct: 385 ERILSSDLVLQNYHVPAGTLVLLYLYSMGRNPAVFPRPERYMP 427
>ref|NP_034139.2| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Mus
musculus].
Length = 507
Score = 108 bits (269), Expect(2) = 3e-36
Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 2/235 (0%)
Frame = +1
Query: 214 RPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPE 393
R S+IP P + L + + G ++H V +YGPI+ G L +VY+ DP
Sbjct: 35 RSLSDIPGPSTLSF--LAELFCKGGLSRLHELQVHGAARYGPIWSGSFGTLRTVYVADPT 92
Query: 394 DVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIK 573
V L + E PER + W + + +Q+ G+L W++ R +L ++ P+A
Sbjct: 93 LVEQLLRQESHCPERCSFSSWAEHRRRHQRACGLLTADGEEWQRLRSLLAPLLLRPQAAA 152
Query: 574 NFIPLLDTVSQDFVGVLHRRIKQQGSG--KFSGDIREDLFRFAFESITNVIFGERLGMLE 747
+ LD V +D V L RR + +GSG D+ + ++F ESI V+ G RLG LE
Sbjct: 153 GYAGTLDNVVRDLVRRL-RRQRGRGSGLPGLVLDVAGEFYKFGLESIGAVLLGSRLGCLE 211
Query: 748 EIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
V P+ + FI AV +F +++ + +P L L W WD +F A+
Sbjct: 212 AEVPPDTETFIHAVGSVFVSTLLTMAMPNWLHHLI-PGPWARLCRDWDQMFAFAQ 265
Score = 63.2 bits (152), Expect(2) = 3e-36
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Frame = +2
Query: 980 LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHARR 1159
L L +K+ + + NVTE+L GVDT S TL W LYE++R +VQ L E+ R
Sbjct: 293 LTHFLFREKVSVQSIVGNVTELLLAGVDTVSNTLSWTLYELSRHPDVQTALHSEITAGTR 352
Query: 1160 ----QAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE*LGVSRYMIPAKTLVQVA 1327
HG R + + VP + V Y+IP TLV +
Sbjct: 353 GSCAHPHGTALSQLPLLKAVIKEVLRL--YPVVPGNSRVPDRDIRVGNYVIPQDTLVSLC 410
Query: 1328 VYAMGREPAFFSNQXQFDP 1384
YA R+P F + F+P
Sbjct: 411 HYATSRDPTQFPDPNSFNP 429
>ref|NP_034126.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial precursor
[Mus musculus].
Length = 514
Score = 129 bits (325), Expect(2) = 5e-36
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 4/261 (1%)
Frame = +1
Query: 142 APRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYR----FWKEKGTQKIHYH 309
AP+E P P + GE +++ PG W L FWK G +K H
Sbjct: 37 APKEVPLCPLMTDGETRNVTSL----------PGPTNWPLLGSLLEIFWKG-GLKKQHDT 85
Query: 310 HVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPV 489
+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I PW AY H +
Sbjct: 86 LAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAY 145
Query: 490 GVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGD 669
G+++ + W++ R ++M P I ++ V DF+G + ++G + D
Sbjct: 146 GLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFMGQIDELRDERGRIQ---D 202
Query: 670 IREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRL 849
+ +L +++FESI V++ +R G+L++ + EA FI A+ M T M+ P +L +
Sbjct: 203 LYSELNKWSFESICLVLYEKRFGLLQKDTEEEALTFIAAIKTMMSTFGKMMVTPVELHKR 262
Query: 850 FRTKTWRDHVAAWDTIFNKAE 912
TK W+ H AWDTIF +
Sbjct: 263 LNTKVWQAHTLAWDTIFKSVK 283
Score = 40.8 bits (94), Expect(2) = 5e-36
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 947 RKREFNNYPG--ILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNV 1120
R ++ PG L + D L +++ A VTE+ V+TT+ +L W LY ++R+ V
Sbjct: 289 RLERYSQQPGADFLCDIYQQDHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQV 348
Query: 1121 QEMLREEV 1144
Q+ L E+
Sbjct: 349 QQRLLREI 356
>ref|NP_077226.2| sterol 26-hydroxylase, mitochondrial [Mus musculus].
Length = 533
Score = 50.8 bits (120), Expect(2) = 3e-07
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV 1144
G L+ LL N+ L +++ E+L GVDTTS TL W LY +++S +QE L +EV
Sbjct: 311 GYLHFLLTNELLSTQETIGTFPELLLAGVDTTSNTLTWALYHLSKSPEIQEALHKEV 367
Score = 22.7 bits (47), Expect(2) = 3e-07
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1198 PTPQASIKETLRLHP 1242
P +A IKETLRL+P
Sbjct: 386 PLLKAVIKETLRLYP 400
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,238,503
Number of extensions: 1436523
Number of successful extensions: 5058
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5028
Number of HSP's successfully gapped: 22
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999592.1| cholesterol side-chain cleavage enzyme, mitocho... 582 0.0
Alignment gi|NP_999160.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 114 3e-37
Alignment gi|NP_999240.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 117 4e-33
Alignment gi|NP_001230233.1| sterol 26-hydroxylase, mitochondrial precurs... 79 1e-23
>ref|NP_999592.1| cholesterol side-chain cleavage enzyme, mitochondrial precursor
[Sus scrofa].
Length = 520
Score = 582 bits (1500), Expect(2) = 0.0
Identities = 278/278 (100%), Positives = 278/278 (100%)
Frame = +1
Query: 79 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 258
MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI
Sbjct: 1 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 60
Query: 259 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 438
NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER
Sbjct: 61 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 120
Query: 439 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 618
YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG
Sbjct: 121 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 180
Query: 619 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 798
VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM
Sbjct: 181 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 240
Query: 799 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 912
FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE
Sbjct: 241 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAE 278
Score = 211 bits (538), Expect(2) = 0.0
Identities = 118/170 (69%), Positives = 126/170 (74%), Gaps = 5/170 (2%)
Frame = +2
Query: 890 TLFSIKLKIYPQNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTT 1069
T+F+ K + Y QNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTT
Sbjct: 272 TIFN-KAEKYTQNFYWDLRRKREFNNYPGILYRLLGNDKLLSEDVKANVTEMLAGGVDTT 330
Query: 1070 SMTLQWHLYEMARSLNVQEMLREEVLHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLR 1249
SMTLQWHLYEMARSLNVQEMLREEVL+ARRQA G+ S T
Sbjct: 331 SMTLQWHLYEMARSLNVQEMLREEVLNARRQAQGDTSKMLQLVPLLKASI----KETLRL 386
Query: 1250 DPAEVPRE-----*LGVSRYMIPAKTLVQVAVYAMGREPAFFSNQXQFDP 1384
P V + L + YMIPAKTLVQVAVYAMGR+PAFFSN QFDP
Sbjct: 387 HPISVTLQRYLVNDLVLRDYMIPAKTLVQVAVYAMGRDPAFFSNPGQFDP 436
>ref|NP_999160.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Sus
scrofa].
Length = 504
Score = 114 bits (284), Expect(2) = 3e-37
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 5/243 (2%)
Frame = +1
Query: 199 STKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVY 378
S PR +++P P G+ L + + G ++H VQ ++GP++ G + +VY
Sbjct: 26 SDSAPRGLADLPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVWLASFGKVRTVY 83
Query: 379 IIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMA 558
+ P V L + EGP PER + PW + + Q+ G+L + W++ R +L ++
Sbjct: 84 VAAPTLVEQLLRQEGPLPERCSFSPWTEHRRRRQRSCGLLTAEGEEWQRLRSLLAPLLLR 143
Query: 559 PEAIKNFIPLLDTVSQDFVGVLHRRIKQQ-----GSGKFSGDIREDLFRFAFESITNVIF 723
P+A + L V QD V RR++ Q G D+ + ++F E I V+
Sbjct: 144 PQAAARYAGTLHDVVQDLV----RRLRSQRGLGAGPPALVRDVAGEFYKFGLEGIAAVLL 199
Query: 724 GERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFN 903
G RLG LE V P+ + FI AV +F +++ + +P L RL W WD +F
Sbjct: 200 GSRLGCLEPEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRLV-PGPWARLCRDWDQMFA 258
Query: 904 KAE 912
A+
Sbjct: 259 FAQ 261
Score = 60.1 bits (144), Expect(2) = 3e-37
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Frame = +2
Query: 992 LGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLHARRQAHG 1171
L ++L + + NVTE+L GVDT S TL W LYE++R VQ L E+ A +
Sbjct: 293 LFREELPAPSILGNVTELLLAGVDTVSNTLSWALYELSRHPEVQMALHSEIKTALGPSSS 352
Query: 1172 EH-SXXXXXXXXXXXXXXRH*DSTHLRDP--AEVPRE*LGVSRYMIPAKTLVQVAVYAMG 1342
H S + + P + VP + + V Y+IP TLV + YA
Sbjct: 353 AHPSATVLSQLPLLKAVVKEVLRLYPVVPGNSRVPDKDICVGDYIIPKNTLVTLCHYATS 412
Query: 1343 REPAFFSNQXQFDP 1384
R+PA F F P
Sbjct: 413 RDPAQFPEPNSFRP 426
>ref|NP_999240.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial [Sus
scrofa].
Length = 514
Score = 117 bits (294), Expect(2) = 4e-33
Identities = 65/214 (30%), Positives = 114/214 (53%)
Frame = +1
Query: 274 WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPP 453
WK G +K H + +KYG I+R KLG+ +SV++ P + L++ E +P+R I P
Sbjct: 75 WKG-GLKKQHDTLAEYHRKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIKP 133
Query: 454 WVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRR 633
W AY + ++ G+L+ + W++ R ++M P + ++ V DF+ +
Sbjct: 134 WKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPMEVMKLDNKINEVLADFMSRIDEL 193
Query: 634 IKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSV 813
++G + D+ +L +++FESI V++ +R G+L++ EA FI A+ M T
Sbjct: 194 CDERGCIE---DLYSELNKWSFESICLVLYEKRFGLLQKDAGEEALNFITAIKTMMSTFG 250
Query: 814 PMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEN 915
M+ P +L + TK W+ H AWDTIF ++
Sbjct: 251 KMMVTPVELHKNLNTKVWQAHTLAWDTIFKSVKS 284
Score = 42.7 bits (99), Expect(2) = 4e-33
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Frame = +2
Query: 998 NDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREE---VLHARRQAH 1168
+++L +++ A+VTE+ ++TT+ +L W LY ++R+ +VQ+ L +E VL +
Sbjct: 308 HNQLSKKELYASVTELQLAAIETTANSLMWILYNLSRNPHVQQKLLKEIQSVLPENQMPR 367
Query: 1169 GEHSXXXXXXXXXXXXXXRH*DS----THLRDPAEVPRE*LGVSRYMIPAKTLVQVAVYA 1336
E R S T D A V + Y +P T++ + Y
Sbjct: 368 AEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKAMV------LGEYALPKGTVLMLNTYV 421
Query: 1337 MGREPAFFSNQXQFDP 1384
+G F + QF P
Sbjct: 422 LGTNEENFEDSSQFRP 437
>ref|NP_001230233.1| sterol 26-hydroxylase, mitochondrial precursor [Sus scrofa].
Length = 537
Score = 78.6 bits (192), Expect(2) = 1e-23
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 8/270 (2%)
Frame = +1
Query: 175 GTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREK 354
GTG G + R E+ PG L++ + +H V N KYGP++
Sbjct: 51 GTGPG----DRRLRSLKELSGPGRLRL--LFQLLAQGYVLHLHQLQVLNKAKYGPMWINY 104
Query: 355 LGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRL 534
+G V + + + + EG P R ++ W + G + +W + R
Sbjct: 105 IGPQIHVNVASAPLLEQVMRQEGKYPVRNDMDLWKEHRDLQGLTYGPFTTEGESWYRLRQ 164
Query: 535 VLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITN 714
LN ++ P + L+ V DF+ L++ + G DI + FA E+I
Sbjct: 165 ALNQRMLKPADAALYTNALNEVVDDFMVRLNQLRAESTLGDHVPDIAHQFYFFALEAICY 224
Query: 715 VIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDT 894
++F +R+G LE + + + F+ +V MF S+ LP L WR ++ W+T
Sbjct: 225 ILFEKRIGCLERSIPQDTKAFVRSVGFMFQNSLYATFLPKWTRPLL--PYWRRYLDGWNT 282
Query: 895 IFN--------KAENIPPELLLGPETEKRI 960
IF+ K E I +L G E RI
Sbjct: 283 IFSFGKKLIDQKLEEIEAQLQAGGPEEPRI 312
Score = 49.7 bits (117), Expect(2) = 1e-23
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Frame = +2
Query: 974 GILYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV--- 1144
G L+ LL + +L + + ++ E+L GVDTTS TL W LY ++++ +Q L EEV
Sbjct: 314 GYLHFLLTSGQLSPREAEGSLPELLMAGVDTTSNTLTWALYHLSKNPEIQAALHEEVVGM 373
Query: 1145 LHARRQAHGEHSXXXXXXXXXXXXXXRH*DSTHLRDPAEVPRE*LGVSRYMIPAKTLVQV 1324
+ A R + R + +E + V ++ P T +
Sbjct: 374 VPAGRVPQYKDLAHMPLLKAVLKETLRLYPVVPVNSRVITDKE-IEVGGFLFPKNTQFVL 432
Query: 1325 AVYAMGREPAFFSNQXQFDP 1384
Y + R+P+ F +F P
Sbjct: 433 CHYVVSRDPSIFPEPDRFQP 452
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,924,554
Number of extensions: 1109130
Number of successful extensions: 3909
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3905
Number of HSP's successfully gapped: 15
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006984
(1384 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892482.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 658 0.0
gb|GL893363.2| Sus scrofa unplaced genomic scaffold ChrUScaf1248 404 e-110
>gb|GL892482.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1342
Length = 117911
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus
Query: 17 agactcacctcatcaggccctgctgcagtgggagcagggagagtagcagtggtaggggca 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112571 agactcacctcatcaggccctgctgcagtgggagcagggagagtagcagtggtaggggca 112630
Query: 77 gcatgctggccagggggcttgccctccgctcagtcctggtcaaaggctgccagcccttcc 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112631 gcatgctggccagggggcttgccctccgctcagtcctggtcaaaggctgccagcccttcc 112690
Query: 137 tgagtgcccctcgggagtgcccagggcatcccagggtgggcactggagagggagcatgca 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112691 tgagtgcccctcgggagtgcccagggcatcccagggtgggcactggagagggagcatgca 112750
Query: 197 tctccactaaaacccctcgccccttcagtgagatcccctctcctggtgacaatggctgga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112751 tctccactaaaacccctcgccccttcagtgagatcccctctcctggtgacaatggctgga 112810
Query: 257 ttaacctgtaccgtttctggaaggagaagggcacacagaaaatccactatcaccatgtcc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112811 ttaacctgtaccgtttctggaaggagaagggcacacagaaaatccactatcaccatgtcc 112870
Query: 317 agaacttccagaagtatggtcccatttacagg 348
||||||||||||||||||||||||||||||||
Sbjct: 112871 agaacttccagaagtatggtcccatttacagg 112902
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 345 cagggagaagctcggcaacttggaatctgtttatatcatcgaccctgaagatgtggccct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116234 cagggagaagctcggcaacttggaatctgtttatatcatcgaccctgaagatgtggccct 116293
Query: 405 tctctttaagttcgaaggacccaacccagaacgatacaacatcccgccctgggttgccta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116294 tctctttaagttcgaaggacccaacccagaacgatacaacatcccgccctgggttgccta 116353
Query: 465 tcaccagcattaccagaagcctgttggggtcctgctgaag 504
||||||||||||||||||||||||||||||||||||||||
Sbjct: 116354 tcaccagcattaccagaagcctgttggggtcctgctgaag 116393
>gb|GL893363.2| Sus scrofa unplaced genomic scaffold ChrUScaf1248
Length = 166125
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 704 ccatcaccaatgtcatatttggagagcgcctggggatgctggaggaaatagtggaccctg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164808 ccatcaccaatgtcatatttggagagcgcctggggatgctggaggaaatagtggaccctg 164749
Query: 764 aggctcagaagttcattgatgctgtctaccagatgttccacactagtgtccccatgctca 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164748 aggctcagaagttcattgatgctgtctaccagatgttccacactagtgtccccatgctca 164689
Query: 824 atctcccccctgacctgttccgtctgttcaggaccaagacctggagggaccatgtagccg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164688 atctcccccctgacctgttccgtctgttcaggaccaagacctggagggaccatgtagccg 164629
Query: 884 catgggacactattttcaataaag 907
||||||||||||||||||||||||
Sbjct: 164628 catgggacactattttcaataaag 164605
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 504 gaagtcaggagcctggaagaaagaccggttggtcctgaacacggaggtaatggctccaga 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165950 gaagtcaggagcctggaagaaagaccggttggtcctgaacacggaggtaatggctccaga 165891
Query: 564 ggccataaagaacttcatccccctactggacacagtgtctcaggacttcgtcggcgtcct 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165890 ggccataaagaacttcatccccctactggacacagtgtctcaggacttcgtcggcgtcct 165831
Query: 624 gcacaggcgcatcaagcagcagggttctggaaagttctcaggtgacatcagggaagacct 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165830 gcacaggcgcatcaagcagcagggttctggaaagttctcaggtgacatcagggaagacct 165771
Query: 684 gtttcgcttcgcctttgagt 703
||||||||||||||||||||
Sbjct: 165770 gtttcgcttcgcctttgagt 165751
Score = 295 bits (149), Expect = 3e-77
Identities = 159/161 (98%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 906 agctgaaaatatacccccagaacttctactgggacctgagacggaaaagagaatttaaca 965
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163828 agctgaaaa-atacacccagaacttctactgggacctgagacggaaaagagaatttaaca 163770
Query: 966 attacccaggcatcctctaccgcctcctgggaaatgacaagctgctctcagaagatgtta 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163769 attacccaggcatcctctaccgcctcctgggaaatgacaagctgctctcagaagatgtta 163710
Query: 1026 aggccaatgttaccgagatgctggcagggggtgtagacacg 1066
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 163709 aggccaatgttaccgagatgctggcagggggtgtagacacg 163669
Score = 242 bits (122), Expect = 4e-61
Identities = 160/169 (94%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 1066 gacatccatgactctgcaatggcacttgtatgagatggcacgtagcctgaatgtgcagga 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160913 gacatccatgactctgcaatggcacttgtatgagatggcacgtagcctgaatgtgcagga 160854
Query: 1126 gatgctgcgggaggaggtcctccatgcccggcgccaggcccatgggga-acacagcaaga 1184
|||||||||||||||||||||| ||||||||||||||||||| || || ||| |||||||
Sbjct: 160853 gatgctgcgggaggaggtcctcaatgcccggcgccaggcccaaggagacaca-agcaaga 160795
Query: 1185 tgctgncattggtcccactcctc-aagctagcattaaagagacactgag 1232
||||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 160794 tgctgcaattggtcccactcctcaaagctagcattaaggagacactgag 160746
Score = 123 bits (62), Expect = 3e-25
Identities = 73/77 (94%)
Strand = Plus / Minus
Query: 1308 agacattggtacaagtggccgtctatgccatgggccgagaacccgccttcttctcaaatc 1367
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 159784 agacattggtacaagtggccgtctatgccatgggccgagaccccgccttcttctcaaatc 159725
Query: 1368 aggnccagtttgaccca 1384
| |||||||||||||
Sbjct: 159724 caggccagtttgaccca 159708
Score = 89.7 bits (45), Expect = 4e-15
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 1231 agactccaccc-atctccgtgaccctgcagaggtacctcgtgaatgacttggggtctcga 1289
||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 160394 agactccaccccatctccgtgaccctgcagagatacctcgtgaatgacttggttcttcga 160335
Query: 1290 ga-tacatgattcctgccaag 1309
|| ||||||||||||||||||
Sbjct: 160334 gattacatgattcctgccaag 160314
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,962,593
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 8
Length of query: 1384
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1363
Effective length of database: 2,808,413,156
Effective search space: 3827867131628
Effective search space used: 3827867131628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)