Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788817.1| cholesterol side-chain cleavage enzyme, mitocho... 535 e-152
Alignment gi|NP_777063.2| cytochrome P450 11B1, mitochondrial precursor [... 179 4e-45
Alignment gi|XP_002692553.1| PREDICTED: cytochrome P450, family 24, subfa... 131 9e-31
Alignment gi|XP_002692552.1| PREDICTED: cytochrome P450, family 24, subfa... 131 9e-31
Alignment gi|NP_001178346.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, m... 130 2e-30
Alignment gi|XP_591370.3| PREDICTED: cytochrome P450, family 24, subfamil... 130 2e-30
Alignment gi|NP_001179213.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mit... 129 5e-30
Alignment gi|XP_002687602.1| PREDICTED: cytochrome P450, family 27, subfa... 129 5e-30
Alignment gi|XP_002685263.1| PREDICTED: FLJ16008 protein-like [Bos taurus]. 105 5e-23
Alignment gi|XP_874669.3| PREDICTED: FLJ16008 protein-like [Bos taurus]. 105 5e-23
>ref|NP_788817.1| cholesterol side-chain cleavage enzyme, mitochondrial precursor [Bos
taurus].
Length = 520
Score = 535 bits (1377), Expect = e-152
Identities = 257/349 (73%), Positives = 294/349 (84%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
MLARGL LRS LVK C P LS E GH RVGTGEGA ISTKTPRP+SEIPSPGDNGW+
Sbjct: 1 MLARGLPLRSALVKACPPILSTVGEGWGHHRVGTGEGAGISTKTPRPYSEIPSPGDNGWL 60
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
NLY FW+EKG+Q+IH+ H++NFQKYGPIYREKLGNLESVYII PEDVA LFKFEG PER
Sbjct: 61 NLYHFWREKGSQRIHFRHIENFQKYGPIYREKLGNLESVYIIHPEDVAHLFKFEGSYPER 120
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
Y+IPPW+AYH++YQKP+GVL KKSG WKKDR+VLNTEVMAPEAIKNFIPLL+ VSQDFV
Sbjct: 121 YDIPPWLAYHRYYQKPIGVLFKKSGTWKKDRVVLNTEVMAPEAIKNFIPLLNPVSQDFVS 180
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
+LH+RIKQQGSGKF GDI+EDLF FAFESITNV+FGERLGMLEE V+PEAQKFIDAVY+M
Sbjct: 181 LLHKRIKQQGSGKFVGDIKEDLFHFAFESITNVMFGERLGMLEETVNPEAQKFIDAVYKM 240
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQAS 964
FHTSVP+LN+PP+L+RLFRTKTWRDHVAAWDTIF AEKYT+ FY DL+RK +F Y
Sbjct: 241 FHTSVPLLNVPPELYRLFRTKTWRDHVAAWDTIFNKAEKYTEIFYQDLRRKTEFRNYPGI 300
Query: 965 STASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ + ++ + + GGV+TTS+TL WHLYEMA +LNVQE
Sbjct: 301 LYCLLKSEKMLLEDVKANITEMLAGGVNTTSMTLQWHLYEMARSLNVQE 349
>ref|NP_777063.2| cytochrome P450 11B1, mitochondrial precursor [Bos taurus].
Length = 503
Score = 179 bits (454), Expect = 4e-45
Identities = 100/315 (31%), Positives = 161/315 (51%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G + K PF +P N W+ + + WKE+ ++ +H Q FQ+ GPI+R +G
Sbjct: 25 GTRGAAAPKAVLPFEAMPRCPGNKWMRMLQIWKEQSSENMHLDMHQTFQELGPIFRYDVG 84
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 526
V+++ PEDV L + + +P+R + PW+AY Q GV L W+ DRL L
Sbjct: 85 GRHMVFVMLPEDVERLQQADSHHPQRMILEPWLAYRQARGHKCGVFLLNGPQWRLDRLRL 144
Query: 527 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 706
N +V++ A++ + PL+D V++DF L R+ Q G + R LFR+ E+ T V+
Sbjct: 145 NPDVLSLPALQKYTPLVDGVARDFSQTLKARVLQNARGSLTLGHRAQLFRYTIEASTLVL 204
Query: 707 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 886
+GERLG+L + +P++ FI A+ M ++V ++ +P L R T WR+H AWD IF
Sbjct: 205 YGERLGLLTQQPNPDSLNFIHALEAMLKSTVQLMFVPRRLSRWMSTNMWREHFEAWDYIF 264
Query: 887 K*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTL 1066
+ A + Q Y +L ++ Y + ++ G VDTT+ L
Sbjct: 265 QYANRAIQRIYQELALGHPWH-YSGIVAELLMRADMTLDTIKANTIDLTAGSVDTTAFPL 323
Query: 1067 PWHLYEMAPTLNVQE 1111
L+E+A VQ+
Sbjct: 324 LMTLFELARNPEVQQ 338
>ref|XP_002692553.1| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 2 [Bos taurus].
Length = 448
Score = 131 bits (330), Expect = 9e-31
Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 12/353 (3%)
Frame = +2
Query: 89 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 259
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 260 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 436
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 437 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 616
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 617 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 796
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 797 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNI 952
M+ P +L R T+ W+ H AWDTIF+ EKY++ D +I
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKSCVDNRLEKYSEQPSMDF----LCDI 305
Query: 953 YQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
Y + + +E+ + ++ V+TT+ +L W LY ++ +VQ+
Sbjct: 306 YHHNQLSKKELYAAVTELQL--------AAVETTANSLMWILYNLSRNPHVQQ 350
>ref|XP_002692552.1| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 1 [Bos taurus].
Length = 514
Score = 131 bits (330), Expect = 9e-31
Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 12/353 (3%)
Frame = +2
Query: 89 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 259
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 260 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 436
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 437 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 616
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 617 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 796
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 797 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNI 952
M+ P +L R T+ W+ H AWDTIF+ EKY++ D +I
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKSCVDNRLEKYSEQPSMDF----LCDI 305
Query: 953 YQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
Y + + +E+ + ++ V+TT+ +L W LY ++ +VQ+
Sbjct: 306 YHHNQLSKKELYAAVTELQL--------AAVETTANSLMWILYNLSRNPHVQQ 350
>ref|NP_001178346.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial [Bos
taurus].
Length = 448
Score = 130 bits (328), Expect = 2e-30
Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 12/353 (3%)
Frame = +2
Query: 89 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 259
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 260 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 436
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 437 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 616
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFPKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 617 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 796
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 797 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNI 952
M+ P +L R T+ W+ H AWDTIF+ EKY++ D +I
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKSCVDNRLEKYSEQPSMDF----LCDI 305
Query: 953 YQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
Y + + +E+ + ++ V+TT+ +L W LY ++ +VQ+
Sbjct: 306 YHHNQLSKKELYAAVTELQL--------AAVETTANSLMWILYNLSRNPHVQQ 350
>ref|XP_591370.3| PREDICTED: cytochrome P450, family 24, subfamily A, polypeptide
1-like isoform 2 [Bos taurus].
Length = 514
Score = 130 bits (328), Expect = 2e-30
Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 12/353 (3%)
Frame = +2
Query: 89 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRF--- 259
R V C P PRE P P + GE +T PG W L
Sbjct: 26 RPVTSTACSP--RRPREVPLCPVMEPGEAQDAATL----------PGPTKWPLLGSLLEI 73
Query: 260 -WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIP 436
WK G +K H V+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I
Sbjct: 74 LWKG-GLKKQHDTLVEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIK 132
Query: 437 PWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR 616
PW AY + ++ G+L+ + W++ R ++M P I ++ V DF+G +
Sbjct: 133 PWKAYRDYREEGYGLLILEGEDWQRVRSAFPKKLMKPVEIMKLDDKINEVLADFMGRIDE 192
Query: 617 RIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTS 796
++G + D+ +L +++FESI V++ +R G+L++ EA FI AV M
Sbjct: 193 LCDERGRIE---DLYTELNKWSFESICLVLYEKRFGLLQKNAGEEALNFIMAVKTMMSMF 249
Query: 797 VPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNI 952
M+ P +L R T+ W+ H AWDTIF+ EKY++ D +I
Sbjct: 250 GKMMVTPVELHRSLNTRVWQAHTQAWDTIFRSVKSCVDNRLEKYSEQPSMDF----LCDI 305
Query: 953 YQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
Y + + +E+ + ++ V+TT+ +L W LY ++ +VQ+
Sbjct: 306 YHHNQLSKKELYAAVTELQL--------AAVETTANSLMWILYNLSRNPHVQQ 350
>ref|NP_001179213.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Bos taurus].
Length = 508
Score = 129 bits (324), Expect = 5e-30
Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 14/333 (4%)
Frame = +2
Query: 152 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 331
P +G G+ S PR ++IP P G+ L + + G ++H VQ ++GP++
Sbjct: 18 PELGASLGSRGSESAPRVLADIPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVW 75
Query: 332 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 511
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 76 LASFGTVRTVYLAAPTLVEQLLRQEGPRPERCSFSPWTEHRRRRQRACGLLTAEGEEWQR 135
Query: 512 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFS--GDIREDLFRFAF 685
R +L ++ P+A + L V +D V L RR + G+G S D+ + ++F
Sbjct: 136 LRSLLAPLLLRPQAAARYAGTLHGVVRDLVRRL-RRQRGLGAGPPSLVRDVAGEFYKFGL 194
Query: 686 ESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 865
E I V+ G RLG LE V P+ + FI AV +F +++ + +P L R+ W
Sbjct: 195 EGIAAVLLGSRLGCLEAEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRVV-PGPWDRLC 253
Query: 866 AAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREM---TSCSQKMLRPMLP---- 1024
WD +F A+++ + +R+ + + S + +M + +L+ LP
Sbjct: 254 RDWDQMFAFAQQHVE------QREAEVAMRNQSEKSEEDMGPGAHLTYFLLQKELPAASI 307
Query: 1025 -----KCWPGGVDTTSLTLPWHLYEMAPTLNVQ 1108
+ GVDT S TL W LYE++ +Q
Sbjct: 308 LGNVTELLLAGVDTVSNTLSWALYELSRHPEIQ 340
>ref|XP_002687602.1| PREDICTED: cytochrome P450, family 27, subfamily B, polypeptide 1
[Bos taurus].
Length = 508
Score = 129 bits (324), Expect = 5e-30
Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 14/333 (4%)
Frame = +2
Query: 152 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 331
P +G G+ S PR ++IP P G+ L + + G ++H VQ ++GP++
Sbjct: 18 PELGASLGSRGSESAPRVLADIPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVW 75
Query: 332 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 511
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 76 LASFGTVRTVYLAAPTLVEQLLRQEGPRPERCSFSPWTEHRRRRQRACGLLTAEGEEWQR 135
Query: 512 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFS--GDIREDLFRFAF 685
R +L ++ P+A + L V +D V L RR + G+G S D+ + ++F
Sbjct: 136 LRSLLAPLLLRPQAAARYAGTLHGVVRDLVRRL-RRQRGLGAGPPSLVRDVAGEFYKFGL 194
Query: 686 ESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 865
E I V+ G RLG LE V P+ + FI AV +F +++ + +P L R+ W
Sbjct: 195 EGIAAVLLGSRLGCLEAEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRVV-PGPWDRLC 253
Query: 866 AAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREM---TSCSQKMLRPMLP---- 1024
WD +F A+++ + +R+ + + S + +M + +L+ LP
Sbjct: 254 RDWDQMFAFAQQHVE------QREAEVAMRNQSEKSEEDMGPGAHLTYFLLQKELPAASI 307
Query: 1025 -----KCWPGGVDTTSLTLPWHLYEMAPTLNVQ 1108
+ GVDT S TL W LYE++ +Q
Sbjct: 308 LGNVTELLLAGVDTVSNTLSWALYELSRHPEIQ 340
>ref|XP_002685263.1| PREDICTED: FLJ16008 protein-like [Bos taurus].
Length = 537
Score = 105 bits (263), Expect = 5e-23
Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 4/307 (1%)
Frame = +2
Query: 203 PFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPED 382
P S PG NL F+ + G +IH ++ ++YG I++ G V + D +
Sbjct: 63 PRSLAAMPGPRTLANLVEFFGKDGFSRIHEIQQKHTREYGKIFKSHFGPQFVVSVADRDL 122
Query: 383 VALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKN 562
VA + + EG +P+R N+ W Y + G++ + W K R VL ++ P+ +
Sbjct: 123 VAQVLRAEGASPQRANMGSWQEYRDLRGRSTGLISAEGEQWLKMRSVLRQRILKPKDVAI 182
Query: 563 FIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIV 742
F ++ V D + ++ Q G +I + F+++ E + +++ RLG L +
Sbjct: 183 FAGEINQVIADLIKRIYFLKSQAEDGDTVTNINDLFFKYSMEGVATILYESRLGCLGNSI 242
Query: 743 DPEAQKFIDAVYQMFHTSVPML--NLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNF 916
+I+A+ MF T + P RL K W++ +WD +F+ ++ + N
Sbjct: 243 PQLTADYIEALALMFCTFKTSMYAGAIPRWLRLLIPKPWQEFCRSWDGLFEFSQIHVDNK 302
Query: 917 YWDLK--RKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMA 1090
D++ +R + T + + + + + GVDTTS TL W +Y +A
Sbjct: 303 LRDIRCQMERGERVRGGLLTYLFLSQELTLEEIYANMTEMLLAGVDTTSFTLSWAVYLLA 362
Query: 1091 PTLNVQE 1111
VQ+
Sbjct: 363 RHPEVQQ 369
>ref|XP_874669.3| PREDICTED: FLJ16008 protein-like [Bos taurus].
Length = 537
Score = 105 bits (263), Expect = 5e-23
Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 4/307 (1%)
Frame = +2
Query: 203 PFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPED 382
P S PG NL F+ + G +IH ++ ++YG I++ G V + D +
Sbjct: 63 PRSLAAMPGPRTLANLVEFFGKDGFSRIHEIQQKHTREYGKIFKSHFGPQFVVSVADRDL 122
Query: 383 VALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKN 562
VA + + EG +P+R N+ W Y + G++ + W K R VL ++ P+ +
Sbjct: 123 VAQVLRAEGASPQRANMGSWQEYRDLRGRSTGLISAEGEQWLKMRSVLRQRILKPKDVAI 182
Query: 563 FIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIV 742
F ++ V D + ++ Q G +I + F+++ E + +++ RLG L +
Sbjct: 183 FAGEINQVIADLIKRIYFLKSQAEDGDTVTNINDLFFKYSMEGVATILYESRLGCLGNSI 242
Query: 743 DPEAQKFIDAVYQMFHTSVPML--NLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNF 916
+I+A+ MF T + P RL K W++ +WD +F+ ++ + N
Sbjct: 243 PQLTADYIEALALMFCTFKTSMYAGAIPRWLRLLIPKPWQEFCRSWDGLFEFSQIHVDNK 302
Query: 917 YWDLK--RKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMA 1090
D++ +R + T + + + + + GVDTTS TL W +Y +A
Sbjct: 303 LRDIRCQMERGERVRGGLLTYLFLSQELTLEEIYANMTEMLLAGVDTTSFTLSWAVYLLA 362
Query: 1091 PTLNVQE 1111
VQ+
Sbjct: 363 RHPEVQQ 369
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,289,886
Number of extensions: 1453737
Number of successful extensions: 5345
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5311
Number of HSP's successfully gapped: 11
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535539.2| PREDICTED: similar to Cytochrome P450 11A1, mit... 552 e-157
Alignment gi|XP_539192.2| PREDICTED: similar to Cytochrome P450 11B2, mit... 177 2e-44
Alignment gi|XP_543059.2| PREDICTED: similar to Cytochrome P450 24A1, mit... 129 4e-30
Alignment gi|XP_538254.2| PREDICTED: similar to 25-hydroxyvitamin D-1 alp... 127 2e-29
Alignment gi|XP_540989.2| PREDICTED: similar to cytochrome P450, family 2... 99 7e-21
Alignment gi|XP_853094.1| PREDICTED: similar to Cytochrome P450 27, mitoc... 97 3e-20
Alignment gi|XP_850626.1| PREDICTED: similar to cytochrome P450, subfamil... 61 2e-09
Alignment gi|XP_851388.1| PREDICTED: similar to cytochrome P450, family 1... 59 1e-08
>ref|XP_535539.2| PREDICTED: similar to Cytochrome P450 11A1, mitochondrial precursor
(CYPXIA1) (P450(scc)) (Cholesterol side-chain cleavage
enzyme) (Cholesterol desmolase) [Canis familiaris].
Length = 520
Score = 552 bits (1423), Expect = e-157
Identities = 267/349 (76%), Positives = 297/349 (85%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
MLA+GL LRSVLVKGCQPFLS E PGHPRV TG+GA IST+ PRPFSEIP+PG+NGW+
Sbjct: 1 MLAKGLPLRSVLVKGCQPFLSTVWEGPGHPRVPTGDGASISTQIPRPFSEIPTPGNNGWL 60
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
NLY FW+E G+QKIHYH VQNFQKYGPIYREKLG++ESVYIIDPEDVALLFKFEGP PER
Sbjct: 61 NLYNFWREMGSQKIHYHQVQNFQKYGPIYREKLGSVESVYIIDPEDVALLFKFEGPTPER 120
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
+ IPPWVAYHQ++Q+PVGVLLKKSGAWKKDRL LN EVMAPEAIKNFIPLLD VSQDFV
Sbjct: 121 FCIPPWVAYHQYHQRPVGVLLKKSGAWKKDRLALNQEVMAPEAIKNFIPLLDPVSQDFVK 180
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
VLHRRIKQQGSGKFSGDI +DLFRFAFESITNV+FGERLGMLEE VDPEAQ+FIDAVYQM
Sbjct: 181 VLHRRIKQQGSGKFSGDISDDLFRFAFESITNVMFGERLGMLEERVDPEAQRFIDAVYQM 240
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQAS 964
FHTSVPML PPDLFRLF+TKTWRDHVAAWD IF AE YTQNFYW+L++KR + Y
Sbjct: 241 FHTSVPMLTFPPDLFRLFKTKTWRDHVAAWDVIFNKAEIYTQNFYWELRQKRDVDNYPGI 300
Query: 965 STASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ + ++ + + GGVDTTS+TL WHLYEMA +L VQE
Sbjct: 301 LHRLLKSNKLLFEDVKANITEMLAGGVDTTSMTLQWHLYEMARSLEVQE 349
>ref|XP_539192.2| PREDICTED: similar to Cytochrome P450 11B2, mitochondrial precursor
(CYPXIB2) (P-450Aldo) (Aldosterone synthase) (ALDOS)
(Aldosterone-synthesizing enzyme) (Steroid
18-hydroxylase) (P-450C18) [Canis familiaris].
Length = 593
Score = 177 bits (448), Expect = 2e-44
Identities = 97/314 (30%), Positives = 161/314 (51%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 115 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 174
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 526
V+++ PEDV L + E P P R + PW+AY QH GV L W+ +RL L
Sbjct: 175 GTHMVHVMLPEDVERLQRVESPQPWRPPLDPWLAYRQHRGHKCGVFLLNGPEWRLNRLKL 234
Query: 527 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 706
N +V++ +A++ +IP++D V++DF L R+ Q G + DIR + + E+ + +
Sbjct: 235 NPDVLSLQAVQKYIPMVDGVARDFSQALRARVLQNARGSLTLDIRPSILYYTVEASSLAL 294
Query: 707 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 886
FGERLG+L P + F+ A+ M ++ +L LP L R + W++H +WD I
Sbjct: 295 FGERLGLLGPSPSPASLHFLQALEAMLRSTAQLLYLPRGLSRWTSARVWKEHFESWDYIV 354
Query: 887 K*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTL 1066
+ A + Q Y +L R + Y S + +R + G VDTT+ L
Sbjct: 355 QYANEAIQRIYQELALGRPQH-YSGIVGELLLRADLSPEAVRANCIELTAGSVDTTAYPL 413
Query: 1067 PWHLYEMAPTLNVQ 1108
L+E+A +VQ
Sbjct: 414 WMTLFELARNPDVQ 427
>ref|XP_543059.2| PREDICTED: similar to Cytochrome P450 24A1, mitochondrial precursor
(P450-CC24) (Vitamin D(3) 24-hydroxylase)
(1,25-dihydroxyvitamin D(3) 24-hydroxylase) (24-OHase)
[Canis familiaris].
Length = 514
Score = 129 bits (325), Expect = 4e-30
Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 2/343 (0%)
Frame = +2
Query: 89 RSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKE 268
R V C P PRE P P V GE + R + P G L WK
Sbjct: 26 RPVASAACAP--PRPREVPLCPPVEPGEAQ--NAAALRGPTNWPLLGSL----LEILWKG 77
Query: 269 KGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVA 448
G +K H + +KYG I+R KLG+ +SV++ P + L++ E +P+R I PW A
Sbjct: 78 -GLKKQHDTLAEYHKKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIKPWKA 136
Query: 449 YHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQ 628
Y + ++ G+L+ + W++ R ++M P I ++ V DF+G + +
Sbjct: 137 YRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPVEIMKLDNKINEVLADFMGRIDELCDE 196
Query: 629 QGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPML 808
+G + D+ +L +++FESI V++ +R G+L + EA FI A+ M T M+
Sbjct: 197 RGRIE---DLYSELNKWSFESICLVLYEKRFGLLRKNAGDEALNFIMAIKTMMSTFGRMM 253
Query: 809 NLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTAS--RE 982
P +L + TK W+ H AWDTIFK + N R K++ ++
Sbjct: 254 VTPVELHKSLNTKVWQAHTLAWDTIFKSVKSCIDN------RLEKYSEQPSTDFLCDIYH 307
Query: 983 MTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
S+K L + + V+TT+ +L W LY ++ +VQ+
Sbjct: 308 HNQLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPHVQQ 350
>ref|XP_538254.2| PREDICTED: similar to 25-hydroxyvitamin D-1 alpha hydroxylase,
mitochondrial precursor (Calcidiol 1-monooxygenase)
(25-OHD-1 alpha-hydroxylase) (25-hydroxyvitamin D(3)
1-alpha-hydroxylase) (VD3 1A hydroxylase) (P450C1 alpha)
(P450VD1-alpha) [Canis familiaris].
Length = 535
Score = 127 bits (318), Expect = 2e-29
Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 17/336 (5%)
Frame = +2
Query: 152 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 331
P++G+ G+ S PR ++IP P + L + + G ++H VQ ++GP++
Sbjct: 46 PKLGSSLGSRGSDSAPRSLADIPGPSTP--VFLAELFCKGGLSRLHELQVQGVARFGPVW 103
Query: 332 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 511
G + +VY+ P V L + EGP PER + PW + +H Q+ G+L + ++
Sbjct: 104 LASFGKVRTVYVAAPALVEQLLRQEGPRPERCSFSPWAEHRRHRQRACGLLTAEGEEGQR 163
Query: 512 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQ-----GSGKFSGDIREDLFR 676
R +L ++ P A + L V +D V RR++QQ G D+ + ++
Sbjct: 164 LRSLLAPLLLRPRAAARYAAPLADVVRDLV----RRLRQQRGRGAGPPALVRDVAAEFYK 219
Query: 677 FAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWR 856
F E V+ G RLG LE V P+ FI AV +F +++ + +P L RL W
Sbjct: 220 FGLEGTAAVLLGSRLGCLEAQVPPDTDAFIRAVGSVFVSTLLTMAMPGWLHRLV-PGPWG 278
Query: 857 DHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTS---CSQKMLRPMLP- 1024
WD +F A+++ ++R+ ++ A+ ++ S + +LR LP
Sbjct: 279 RLCRDWDQMFAFAQQH-------VERREAEVALRSEGKAAEDVGSGAHLTYFLLREELPA 331
Query: 1025 --------KCWPGGVDTTSLTLPWHLYEMAPTLNVQ 1108
+ GVDT S TL W LYE+A +VQ
Sbjct: 332 PSILGNVTELLLAGVDTVSNTLSWALYELARHPDVQ 367
>ref|XP_540989.2| PREDICTED: similar to cytochrome P450, family 27, subfamily b,
polypeptide 1 [Canis familiaris].
Length = 490
Score = 99.0 bits (245), Expect = 7e-21
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 26/322 (8%)
Frame = +2
Query: 224 PGDNGWINLYRFWKEKGTQKIHY---------------------HHVQNFQKYGPIYREK 340
PG NL F+ + G +IH H ++ ++YG I++
Sbjct: 2 PGPRTLANLVEFFWKDGFGRIHEIQDFGSSEAARCSASEGRGRPHSQKHTREYGKIFKSH 61
Query: 341 LGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRL 520
G V I D + VA + + EG P+R N+ W Y + G++ + W K R
Sbjct: 62 FGPQFVVSIADRDMVAQVLRAEGATPQRANMESWQEYRHLRGRSTGLISAEGEQWLKMRR 121
Query: 521 VLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITN 700
VL ++ P + F ++ V D + ++ Q G+ ++ E F+++ E +
Sbjct: 122 VLRQRILKPRDVAIFSGEINQVIADLIKRIYILKSQAEDGETVTNVNELFFKYSMEGVAT 181
Query: 701 VIFGERLGMLEEIVDPEAQKFIDA---VYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAA 871
+++ RLG LE V +I+A ++ MF TS+ P R K W + +
Sbjct: 182 ILYESRLGCLENSVPQPTVDYIEALGLMFSMFKTSM-YAGAIPRWLRPLIPKPWLEFCRS 240
Query: 872 WDTIFK*AEKYTQNFYWDLK--RKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGV 1045
WD +FK ++ + N D++ R + T + + + + + GV
Sbjct: 241 WDGLFKFSQIHVDNKLKDIQCHMDRGERVRGGLLTCLFLSQELTLEEIYANMTEMLLAGV 300
Query: 1046 DTTSLTLPWHLYEMAPTLNVQE 1111
DTTS TL W +Y +A VQ+
Sbjct: 301 DTTSFTLSWAVYLLARHPQVQQ 322
>ref|XP_853094.1| PREDICTED: similar to Cytochrome P450 27, mitochondrial precursor
(Cytochrome P-450C27/25) (Sterol 26-hydroxylase) (Sterol
27-hydroxylase) (Vitamin D(3) 25-hydroxylase)
(5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol
27-hydroxylase) [Canis familiaris].
Length = 528
Score = 97.1 bits (240), Expect = 3e-20
Identities = 89/355 (25%), Positives = 143/355 (40%), Gaps = 11/355 (3%)
Frame = +2
Query: 77 GLALRSVLVKGCQPF-LSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLY 253
GL R K P + A E PG+ G GA + R E+P PG + L+
Sbjct: 18 GLCPRGARAKAAIPAAVPATAETPGN-----GPGA----RRLRTLEELPGPGQLRF--LF 66
Query: 254 RFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNI 433
+ + ++H V N KYGP++ G V + + + + EG P R ++
Sbjct: 67 QLLGQGYVLQLHKLQVLNKAKYGPMWVTHAGPQTHVNLASAPLLEQVMRQEGKYPVRNDM 126
Query: 434 PPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLH 613
W + G + W + R LN ++ P + L+ V DF+ L
Sbjct: 127 ELWKEHRDQQGLAYGPFTTEGHHWYQLRHALNQRMLKPSEAALYTDALNEVVDDFMAHLS 186
Query: 614 RRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHT 793
+ + + SG D+ + FA E+I ++F +R+G LE + + F+ +V MF
Sbjct: 187 QLLAESPSGNQVSDMAHQFYYFALEAICYILFEKRIGCLERPIPQDTVAFVRSVGLMFQN 246
Query: 794 SVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTA 973
SV + LP L W+ ++ W+TIF +K D K K Q
Sbjct: 247 SVYVTFLPKWTRPLL--PFWKRYLDGWNTIFSFGKKLI-----DQKLKEIETQLQTKGPD 299
Query: 974 SREMT----------SCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQ 1108
E++ S + LP+ GVDTTS T+ W LY ++ +Q
Sbjct: 300 EVEISGYLHFLLTRGQLSTREAMGSLPELLLAGVDTTSNTMTWALYHLSKNPEIQ 354
>ref|XP_850626.1| PREDICTED: similar to cytochrome P450, subfamily XIB polypeptide 2
precursor, partial [Canis familiaris].
Length = 478
Score = 60.8 bits (146), Expect = 2e-09
Identities = 31/112 (27%), Positives = 57/112 (50%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 117 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 176
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGA 502
V+++ PE + L + E P P+ PW + P+G+LL G+
Sbjct: 177 GTHMVHVMLPEGMERLQRGESPQPD---TSPW-----GFGCPLGLLLALRGS 220
>ref|XP_851388.1| PREDICTED: similar to cytochrome P450, family 11, subfamily B,
polypeptide 1 isoform 1 precursor [Canis familiaris].
Length = 562
Score = 58.5 bits (140), Expect = 1e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A + + PF +P N W+ + + W+++G++ +H + FQ+ GPI+R +G
Sbjct: 167 GTRAAPAPRAVLPFEAVPRCPGNKWMRVLQIWRQQGSESLHLEMHRTFQELGPIFRYDVG 226
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPW 442
V+++ PE + L + E P P+ PW
Sbjct: 227 GTHMVHVMLPEGMERLQRGESPQPD---TSPW 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,265,491
Number of extensions: 1495310
Number of successful extensions: 5106
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5090
Number of HSP's successfully gapped: 8
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000772.2| cholesterol side-chain cleavage enzyme, mitocho... 530 e-151
Alignment gi|NP_001093243.1| cholesterol side-chain cleavage enzyme, mito... 261 6e-70
Alignment gi|NP_000488.3| cytochrome P450 11B1, mitochondrial isoform 1 p... 188 7e-48
Alignment gi|NP_001021384.1| cytochrome P450 11B1, mitochondrial isoform ... 188 7e-48
Alignment gi|NP_000489.3| cytochrome P450 11B2, mitochondrial precursor [... 185 6e-47
Alignment gi|NP_001122387.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, m... 134 1e-31
Alignment gi|NP_000773.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 134 1e-31
Alignment gi|NP_000776.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 114 1e-25
Alignment gi|NP_000775.1| sterol 26-hydroxylase, mitochondrial precursor ... 89 6e-18
Alignment gi|NP_001001665.3| cytochrome P450 27C1 [Homo sapiens]. 68 2e-11
>ref|NP_000772.2| cholesterol side-chain cleavage enzyme, mitochondrial isoform a
precursor [Homo sapiens].
Length = 521
Score = 530 bits (1365), Expect = e-151
Identities = 255/350 (72%), Positives = 293/350 (83%), Gaps = 1/350 (0%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
MLA+GL RSVLVKGCQ FLSAPRE G RV TGEGA IST++PRPF+EIPSPGDNGW+
Sbjct: 1 MLAKGLPPRSVLVKGCQTFLSAPREGLGRLRVPTGEGAGISTRSPRPFNEIPSPGDNGWL 60
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
NLY FW+E GT K+H HHVQNFQKYGPIYREKLGN+ESVY+IDPEDVALLFK EGPNPER
Sbjct: 61 NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPER 120
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
+ IPPWVAYHQ+YQ+P+GVLLKKS AWKKDR+ LN EVMAPEA KNF+PLLD VS+DFV
Sbjct: 121 FLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVS 180
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
VLHRRIK+ GSG +SGDI +DLFRFAFESITNVIFGER GMLEE+V+PEAQ+FIDA+YQM
Sbjct: 181 VLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQM 240
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRK-FNIYQA 961
FHTSVPMLNLPPDLFRLFRTKTW+DHVAAWD IF A+ YTQNFYW+L++K + Y+
Sbjct: 241 FHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKADIYTQNFYWELRQKGSVHHDYRG 300
Query: 962 SSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ S + ++ + + GGVDTTS+TL WHLYEMA L VQ+
Sbjct: 301 ILYRLLGDSKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQD 350
>ref|NP_001093243.1| cholesterol side-chain cleavage enzyme, mitochondrial isoform b [Homo
sapiens].
Length = 363
Score = 261 bits (668), Expect = 6e-70
Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 1/192 (0%)
Frame = +2
Query: 539 MAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGER 718
MAPEA KNF+PLLD VS+DFV VLHRRIK+ GSG +SGDI +DLFRFAFESITNVIFGER
Sbjct: 1 MAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGER 60
Query: 719 LGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AE 898
GMLEE+V+PEAQ+FIDA+YQMFHTSVPMLNLPPDLFRLFRTKTW+DHVAAWD IF A+
Sbjct: 61 QGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKAD 120
Query: 899 KYTQNFYWDLKRKRK-FNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWH 1075
YTQNFYW+L++K + Y+ + S + ++ + + GGVDTTS+TL WH
Sbjct: 121 IYTQNFYWELRQKGSVHHDYRGILYRLLGDSKMSFEDIKANVTEMLAGGVDTTSMTLQWH 180
Query: 1076 LYEMAPTLNVQE 1111
LYEMA L VQ+
Sbjct: 181 LYEMARNLKVQD 192
>ref|NP_000488.3| cytochrome P450 11B1, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 503
Score = 188 bits (478), Expect = 7e-48
Identities = 102/317 (32%), Positives = 166/317 (52%), Gaps = 2/317 (0%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARVPRTVLPFEAMPRRPGNRWLRLLQIWREQGYEDLHLEVHQTFQELGPIFRYDLG 84
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 526
V ++ PEDV L + + +P R ++ PWVAY QH GV L W+ +RL L
Sbjct: 85 GAGMVCVMLPEDVEKLQQVDSLHPHRMSLEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 527 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 706
N EV++P A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPEVLSPNAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 707 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 886
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWTSPKVWKEHFEAWDCIF 264
Query: 887 K*AEKYTQNFYWDL--KRKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSL 1060
+ + Q Y +L R +++ A + E+ S ++ + G VDTT
Sbjct: 265 QYGDNCIQKIYQELAFSRPQQYTSIVAELLLNAEL---SPDAIKANSMELTAGSVDTTVF 321
Query: 1061 TLPWHLYEMAPTLNVQE 1111
L L+E+A NVQ+
Sbjct: 322 PLLMTLFELARNPNVQQ 338
>ref|NP_001021384.1| cytochrome P450 11B1, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 437
Score = 188 bits (478), Expect = 7e-48
Identities = 102/317 (32%), Positives = 166/317 (52%), Gaps = 2/317 (0%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARVPRTVLPFEAMPRRPGNRWLRLLQIWREQGYEDLHLEVHQTFQELGPIFRYDLG 84
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 526
V ++ PEDV L + + +P R ++ PWVAY QH GV L W+ +RL L
Sbjct: 85 GAGMVCVMLPEDVEKLQQVDSLHPHRMSLEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 527 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 706
N EV++P A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPEVLSPNAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 707 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 886
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWTSPKVWKEHFEAWDCIF 264
Query: 887 K*AEKYTQNFYWDL--KRKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSL 1060
+ + Q Y +L R +++ A + E+ S ++ + G VDTT
Sbjct: 265 QYGDNCIQKIYQELAFSRPQQYTSIVAELLLNAEL---SPDAIKANSMELTAGSVDTTVF 321
Query: 1061 TLPWHLYEMAPTLNVQE 1111
L L+E+A NVQ+
Sbjct: 322 PLLMTLFELARNPNVQQ 338
>ref|NP_000489.3| cytochrome P450 11B2, mitochondrial precursor [Homo sapiens].
Length = 503
Score = 185 bits (470), Expect = 6e-47
Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 2/317 (0%)
Frame = +2
Query: 167 GEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLG 346
G A + +T PF +P N W+ L + W+E+G + +H Q FQ+ GPI+R LG
Sbjct: 25 GTRAARAPRTVLPFEAMPQHPGNRWLRLLQIWREQGYEHLHLEMHQTFQELGPIFRYNLG 84
Query: 347 NLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVL 526
V ++ PEDV L + + +P R + PWVAY QH GV L W+ +RL L
Sbjct: 85 GPRMVCVMLPEDVEKLQQVDSLHPCRMILEPWVAYRQHRGHKCGVFLLNGPEWRFNRLRL 144
Query: 527 NTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITNVI 706
N +V++P+A++ F+P++D V++DF L +++ Q G + D++ +F + E+ +
Sbjct: 145 NPDVLSPKAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFHYTIEASNLAL 204
Query: 707 FGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF 886
FGERLG++ + F+ A+ MF ++V ++ +P L R K W++H AWD IF
Sbjct: 205 FGERLGLVGHSPSSASLNFLHALEVMFKSTVQLMFMPRSLSRWISPKVWKEHFEAWDCIF 264
Query: 887 K*AEKYTQNFYWDL--KRKRKFNIYQASSTASREMTSCSQKMLRPMLPKCWPGGVDTTSL 1060
+ + Q Y +L R + + A E+ S + ++ + G VDTT+
Sbjct: 265 QYGDNCIQKIYQELAFNRPQHYTGIVAELLLKAEL---SLEAIKANSMELTAGSVDTTAF 321
Query: 1061 TLPWHLYEMAPTLNVQE 1111
L L+E+A +VQ+
Sbjct: 322 PLLMTLFELARNPDVQQ 338
>ref|NP_001122387.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 448
Score = 134 bits (338), Expect = 1e-31
Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 15/342 (4%)
Frame = +2
Query: 131 PRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI---NLYRFWKEKGTQKIHYHHV 301
PRE P P GE + PG W +L + + G +K H V
Sbjct: 38 PREVPVCPLTAGGETQ----------NAAALPGPTSWPLLGSLLQILWKGGLKKQHDTLV 87
Query: 302 QNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGV 481
+ +KYG I+R KLG+ ESV++ P + L++ E P+R I PW AY + ++ G+
Sbjct: 88 EYHKKYGKIFRMKLGSFESVHLGSPCLLEALYRTESAYPQRLEIKPWKAYRDYRKEGYGL 147
Query: 482 LLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIR 661
L+ + W++ R ++M P + ++ V DF+G + ++G + D+
Sbjct: 148 LILEGEDWQRVRSAFQKKLMKPGEVMKLDNKINEVLADFMGRIDELCDERGHVE---DLY 204
Query: 662 EDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFR 841
+L +++FESI V++ +R G+L++ EA FI A+ M T M+ P +L +
Sbjct: 205 SELNKWSFESICLVLYEKRFGLLQKNAGDEAVNFIMAIKTMMSTFGRMMVTPVELHKSLN 264
Query: 842 TKTWRDHVAAWDTIFK*A--------EKYTQ----NFYWDLKRKRKFNIYQASSTASREM 985
TK W+DH AWDTIFK EKY+Q +F D+ + +
Sbjct: 265 TKVWQDHTLAWDTIFKSVKACIDNRLEKYSQQPSADFLCDIYHQNRL------------- 311
Query: 986 TSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
S+K L + + V+TT+ +L W LY ++ VQ+
Sbjct: 312 ---SKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQVQQ 350
>ref|NP_000773.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 514
Score = 134 bits (338), Expect = 1e-31
Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 15/342 (4%)
Frame = +2
Query: 131 PRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI---NLYRFWKEKGTQKIHYHHV 301
PRE P P GE + PG W +L + + G +K H V
Sbjct: 38 PREVPVCPLTAGGETQ----------NAAALPGPTSWPLLGSLLQILWKGGLKKQHDTLV 87
Query: 302 QNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGV 481
+ +KYG I+R KLG+ ESV++ P + L++ E P+R I PW AY + ++ G+
Sbjct: 88 EYHKKYGKIFRMKLGSFESVHLGSPCLLEALYRTESAYPQRLEIKPWKAYRDYRKEGYGL 147
Query: 482 LLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIR 661
L+ + W++ R ++M P + ++ V DF+G + ++G + D+
Sbjct: 148 LILEGEDWQRVRSAFQKKLMKPGEVMKLDNKINEVLADFMGRIDELCDERGHVE---DLY 204
Query: 662 EDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFR 841
+L +++FESI V++ +R G+L++ EA FI A+ M T M+ P +L +
Sbjct: 205 SELNKWSFESICLVLYEKRFGLLQKNAGDEAVNFIMAIKTMMSTFGRMMVTPVELHKSLN 264
Query: 842 TKTWRDHVAAWDTIFK*A--------EKYTQ----NFYWDLKRKRKFNIYQASSTASREM 985
TK W+DH AWDTIFK EKY+Q +F D+ + +
Sbjct: 265 TKVWQDHTLAWDTIFKSVKACIDNRLEKYSQQPSADFLCDIYHQNRL------------- 311
Query: 986 TSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
S+K L + + V+TT+ +L W LY ++ VQ+
Sbjct: 312 ---SKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQVQQ 350
>ref|NP_000776.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Homo
sapiens].
Length = 508
Score = 114 bits (286), Expect = 1e-25
Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 13/332 (3%)
Frame = +2
Query: 152 PRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIY 331
P +G G R ++IP P + L + + G ++H VQ +GP++
Sbjct: 19 PELGASLGYREYHSARRSLADIPGPSTPSF--LAELFCKGGLSRLHELQVQGAAHFGPVW 76
Query: 332 REKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKK 511
G + +VY+ P V L + EGP PER + PW + + Q+ G+L + W++
Sbjct: 77 LASFGTVRTVYVAAPALVEELLRQEGPRPERCSFSPWTEHRRCRQRACGLLTAEGEEWQR 136
Query: 512 DRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHR-RIKQQGSGKFSGDIREDLFRFAFE 688
R +L ++ P+A + L+ V D V L R R + G D+ + ++F E
Sbjct: 137 LRSLLAPLLLRPQAAARYAGTLNNVVCDLVRRLRRQRGRGTGPPALVRDVAGEFYKFGLE 196
Query: 689 SITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVA 868
I V+ G RLG LE V P+ + FI AV +F +++ + +P L L W
Sbjct: 197 GIAAVLLGSRLGCLEAQVPPDTETFIRAVGSVFVSTLLTMAMPHWLRHLV-PGPWGRLCR 255
Query: 869 AWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTS---CSQKMLRPMLP----- 1024
WD +F A+++ + R+ + +++ S + + R LP
Sbjct: 256 DWDQMFAFAQRHVE-------RREAEAAMRNGGQPEKDLESGAHLTHFLFREELPAQSIL 308
Query: 1025 ----KCWPGGVDTTSLTLPWHLYEMAPTLNVQ 1108
+ GVDT S TL W LYE++ VQ
Sbjct: 309 GNVTELLLAGVDTVSNTLSWALYELSRHPEVQ 340
>ref|NP_000775.1| sterol 26-hydroxylase, mitochondrial precursor [Homo sapiens].
Length = 531
Score = 89.4 bits (220), Expect = 6e-18
Identities = 80/351 (22%), Positives = 140/351 (39%), Gaps = 5/351 (1%)
Frame = +2
Query: 74 RGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLY 253
RGL K P + G P G G + R EIP G + +
Sbjct: 18 RGLCPHGARAKAAIPAALPSDKATGAPGAGPGV-----RRRQRSLEEIPRLGQLRFF--F 70
Query: 254 RFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNI 433
+ + + ++H V KYGP++ LG V + + + + EG P R ++
Sbjct: 71 QLFVQGYALQLHQLQVLYKAKYGPMWMSYLGPQMHVNLASAPLLEQVMRQEGKYPVRNDM 130
Query: 434 PPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLH 613
W + + G + W + R LN ++ P + + V DF+ L
Sbjct: 131 ELWKEHRDQHDLTYGPFTTEGHHWYQLRQALNQRLLKPAEAALYTDAFNEVIDDFMTRLD 190
Query: 614 RRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHT 793
+ + SG D+ + + FA E+I ++F +R+G L+ + + F+ ++ MF
Sbjct: 191 QLRAESASGNQVSDMAQLFYYFALEAICYILFEKRIGCLQRSIPEDTVTFVRSIGLMFQN 250
Query: 794 SVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKF---NIYQAS 964
S+ LP + W+ ++ W+ IF +K D++ + + + Q S
Sbjct: 251 SLYATFLPKWTRPVL--PFWKRYLDGWNAIFSFGKKLIDEKLEDMEAQLQAAGPDGIQVS 308
Query: 965 STASREMTS--CSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ S S + LP+ GVDTTS TL W LY ++ +QE
Sbjct: 309 GYLHFLLASGQLSPREAMGSLPELLMAGVDTTSNTLTWALYHLSKDPEIQE 359
>ref|NP_001001665.3| cytochrome P450 27C1 [Homo sapiens].
Length = 372
Score = 67.8 bits (164), Expect = 2e-11
Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Frame = +2
Query: 515 RLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESI 694
R VL ++ P+ + + ++ V D + ++ Q G+ ++ + F+++ E +
Sbjct: 2 RSVLRQRILKPKDVAIYSGEVNQVIADLIKRIYLLRSQAEDGETVTNVNDLFFKYSMEGV 61
Query: 695 TNVIFGERLGMLEEIVDPEAQKFIDAV---YQMFHTSVPMLNLPPDLFRLFRTKTWRDHV 865
+++ RLG LE + ++I+A+ + MF TS+ +P L R F K WR+
Sbjct: 62 ATILYESRLGCLENSIPQLTVEYIEALELMFSMFKTSMYAGAIPRWL-RPFIPKPWREFC 120
Query: 866 AAWDTIFK*AEKYTQNFYWDLK----RKRKFN------IYQASSTASREMTSCSQKMLRP 1015
+WD +FK ++ + N D++ R R+ + ++ + + +E+ + +ML
Sbjct: 121 RSWDGLFKFSQIHVDNKLRDIQYQMDRGRRVSGGLLTYLFLSQALTLQEIYANVTEMLL- 179
Query: 1016 MLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
GVDTTS TL W +Y +A VQ+
Sbjct: 180 -------AGVDTTSFTLSWTVYLLARHPEVQQ 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,300,251
Number of extensions: 1469105
Number of successful extensions: 5066
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5050
Number of HSP's successfully gapped: 10
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062753.3| cholesterol side-chain cleavage enzyme, mitocho... 502 e-142
Alignment gi|NP_034121.3| cytochrome P450 11B2, mitochondrial [Mus muscul... 188 7e-48
Alignment gi|NP_001028401.2| cytochrome P450, family 11, subfamily b, pol... 180 2e-45
Alignment gi|NP_034126.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 138 7e-33
Alignment gi|NP_034139.2| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 116 3e-26
Alignment gi|NP_077226.2| sterol 26-hydroxylase, mitochondrial [Mus muscu... 97 2e-20
>ref|NP_062753.3| cholesterol side-chain cleavage enzyme, mitochondrial precursor [Mus
musculus].
Length = 526
Score = 502 bits (1293), Expect = e-142
Identities = 239/349 (68%), Positives = 284/349 (81%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
MLA+GL+LRSVLVKGCQPFLS + P + TG+GA ST +PR F+EIPSPGDNGW+
Sbjct: 1 MLAKGLSLRSVLVKGCQPFLSPTWQ---GPVLSTGKGAGTSTSSPRSFNEIPSPGDNGWL 57
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
NLY FW+E GTQKIHYH +Q+FQKYGPIYREKLG LESVYI+DP+D ++LF EGPNPER
Sbjct: 58 NLYHFWRESGTQKIHYHQMQSFQKYGPIYREKLGTLESVYIVDPKDASILFSCEGPNPER 117
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
+ +PPWVAYHQ+YQ+P+GVL K S AWKKDR+VLN EVMAP AIKNF+PLL+ V+QDF+
Sbjct: 118 FLVPPWVAYHQYYQRPIGVLFKSSDAWKKDRIVLNQEVMAPGAIKNFVPLLEGVAQDFIK 177
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
VLHRRIKQQ SG FSG I +DLFRF+FESI++VIFGER+GMLEEIVDPEAQ+FI+AVYQM
Sbjct: 178 VLHRRIKQQNSGNFSGVISDDLFRFSFESISSVIFGERMGMLEEIVDPEAQRFINAVYQM 237
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQAS 964
FHTSVPMLNLPPD FRL RTKTW+DH AAWD IF A++YTQNFYWDL++KR F+ Y
Sbjct: 238 FHTSVPMLNLPPDFFRLLRTKTWKDHAAAWDVIFNKADEYTQNFYWDLRQKRDFSQYPGV 297
Query: 965 STASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ K ++ + + GGVDTTS+TL W+LYEMA L VQE
Sbjct: 298 LYSLLGGNKLPFKNIQANITEMLAGGVDTTSMTLQWNLYEMAHNLKVQE 346
>ref|NP_034121.3| cytochrome P450 11B2, mitochondrial [Mus musculus].
Length = 502
Score = 188 bits (477), Expect = 7e-48
Identities = 103/334 (30%), Positives = 176/334 (52%), Gaps = 3/334 (0%)
Frame = +2
Query: 119 FLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHH 298
+L+ P +C R G A ++ KT +PF IP N W+ + + +E+G + +H
Sbjct: 12 WLARPWQCLHRTRA-LGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEM 70
Query: 299 VQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVG 478
Q F++ GPI+R +G + V ++ PED L + E P R ++ PWVA+ + G
Sbjct: 71 HQVFRELGPIFRHSVGKTQIVSVMLPEDAEKLHQVESMLPRRMHLEPWVAHRELRGLRRG 130
Query: 479 VLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDI 658
V L W+ +RL LN V++P+A++ F+P++D V++DF+ L ++ Q G + D+
Sbjct: 131 VFLLNGPEWRLNRLRLNRNVLSPKAVQKFVPMVDMVARDFLETLKEKVLQNARGSLTMDV 190
Query: 659 REDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLF 838
++ LF + E+ +FGERLG+L + P + KFI A++ MF ++ +L LP L R
Sbjct: 191 QQSLFNYTIEASNFALFGERLGLLGHDLSPGSLKFIHALHSMFKSTSQLLFLPKSLTRWT 250
Query: 839 RTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTSCSQ---KML 1009
T+ W++H AWD I +Y W + ++ + Q S E+ S +
Sbjct: 251 STRVWKEHFDAWDVI----SEYANRCIWKVHQELRLGSSQTYSGIVAELISQGSLPLDAI 306
Query: 1010 RPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ + G VDTT++ L L+E+A +VQ+
Sbjct: 307 KANSMELTAGSVDTTAIPLVMTLFELARNPDVQK 340
>ref|NP_001028401.2| cytochrome P450, family 11, subfamily b, polypeptide 1 [Mus
musculus].
Length = 501
Score = 180 bits (457), Expect = 2e-45
Identities = 100/331 (30%), Positives = 176/331 (53%)
Frame = +2
Query: 119 FLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHH 298
+L+ P +C R G A ++ KT +PF IP N W+ + + +E+G + +H
Sbjct: 12 WLARPWQCLHRTRA-LGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEM 70
Query: 299 VQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVG 478
Q F++ GPI+R +G + V++ PEDV L++ E +P R + W+ + + G
Sbjct: 71 HQVFRELGPIFRHSVGKTQIVFVTLPEDVEKLYQVESTHPCRMPLESWIVHRELRGLGRG 130
Query: 479 VLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDI 658
V L W +RL LN V++P+A++ F+PL+D +++DFV L +++ + G FS D
Sbjct: 131 VFLLNGPEWYFNRLQLNPNVLSPKAVQKFVPLVDGIARDFVDNLKKKMLESVHGSFSMDF 190
Query: 659 REDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLF 838
+ +F + E+ V+FGERLG++ + P++ KF+ ++ MF T+ +L LP L R
Sbjct: 191 QSSVFNYTIEASHFVLFGERLGLIGRDLSPDSLKFLHTLHSMFKTTTQLLYLPRSLTRWT 250
Query: 839 RTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTSCSQKMLRPM 1018
T+ W++++ +WD I + K +N Y +L R + ++ E T S ++
Sbjct: 251 STRVWKENLESWDFISEYVTKCIKNVYRELAEGRP-QSWSVTAELVAERT-LSMDAIQAN 308
Query: 1019 LPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ G DTTS L +E+A +VQ+
Sbjct: 309 SMELIAGSTDTTSTPLVMTFFELARNPDVQQ 339
>ref|NP_034126.1| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial precursor
[Mus musculus].
Length = 514
Score = 138 bits (348), Expect = 7e-33
Identities = 97/340 (28%), Positives = 163/340 (47%), Gaps = 12/340 (3%)
Frame = +2
Query: 128 APRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWINLYR----FWKEKGTQKIHYH 295
AP+E P P + GE +++ PG W L FWK G +K H
Sbjct: 37 APKEVPLCPLMTDGETRNVTSL----------PGPTNWPLLGSLLEIFWKG-GLKKQHDT 85
Query: 296 HVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPV 475
+ +KYG I+R KLG+ +SV++ P + L++ E +P+R I PW AY H +
Sbjct: 86 LAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAY 145
Query: 476 GVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGD 655
G+++ + W++ R ++M P I ++ V DF+G + ++G + D
Sbjct: 146 GLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFMGQIDELRDERGRIQ---D 202
Query: 656 IREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRL 835
+ +L +++FESI V++ +R G+L++ + EA FI A+ M T M+ P +L +
Sbjct: 203 LYSELNKWSFESICLVLYEKRFGLLQKDTEEEALTFIAAIKTMMSTFGKMMVTPVELHKR 262
Query: 836 FRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNIYQASSTASREMTS 991
TK W+ H AWDTIFK E+Y+Q D +IYQ + +E+ +
Sbjct: 263 LNTKVWQAHTLAWDTIFKSVKPCIDHRLERYSQQPGADF----LCDIYQQDHLSKKELYA 318
Query: 992 CSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
++ V+TT+ +L W LY ++ VQ+
Sbjct: 319 AVTELQL--------AAVETTANSLMWILYNLSRNPQVQQ 350
>ref|NP_034139.2| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Mus
musculus].
Length = 507
Score = 116 bits (291), Expect = 3e-26
Identities = 87/311 (27%), Positives = 145/311 (46%), Gaps = 8/311 (2%)
Frame = +2
Query: 200 RPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPE 379
R S+IP P + L + + G ++H V +YGPI+ G L +VY+ DP
Sbjct: 35 RSLSDIPGPSTLSF--LAELFCKGGLSRLHELQVHGAARYGPIWSGSFGTLRTVYVADPT 92
Query: 380 DVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIK 559
V L + E PER + W + + +Q+ G+L W++ R +L ++ P+A
Sbjct: 93 LVEQLLRQESHCPERCSFSSWAEHRRRHQRACGLLTADGEEWQRLRSLLAPLLLRPQAAA 152
Query: 560 NFIPLLDTVSQDFVGVLHRRIKQQGSG--KFSGDIREDLFRFAFESITNVIFGERLGMLE 733
+ LD V +D V L RR + +GSG D+ + ++F ESI V+ G RLG LE
Sbjct: 153 GYAGTLDNVVRDLVRRL-RRQRGRGSGLPGLVLDVAGEFYKFGLESIGAVLLGSRLGCLE 211
Query: 734 EIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQN 913
V P+ + FI AV +F +++ + +P L L W WD +F A+++ +
Sbjct: 212 AEVPPDTETFIHAVGSVFVSTLLTMAMPNWLHHLI-PGPWARLCRDWDQMFAFAQRHVEL 270
Query: 914 FYWDLKRKRKFNIYQASSTASREMT------SCSQKMLRPMLPKCWPGGVDTTSLTLPWH 1075
+ + + + + +T S + + + + GVDT S TL W
Sbjct: 271 REGEAAMRNQ-GKPEEDMPSGHHLTHFLFREKVSVQSIVGNVTELLLAGVDTVSNTLSWT 329
Query: 1076 LYEMAPTLNVQ 1108
LYE++ +VQ
Sbjct: 330 LYELSRHPDVQ 340
>ref|NP_077226.2| sterol 26-hydroxylase, mitochondrial [Mus musculus].
Length = 533
Score = 97.1 bits (240), Expect = 2e-20
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 5/354 (1%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
++ RGL + K P +E P GTG+ PR S PG
Sbjct: 18 VVGRGLCPQGARAKATIPAALQAQESTEGP--GTGQDR------PRLRSPAELPGTGTLQ 69
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
L++ + + + V N KYGP++ G +V + + + + EG P R
Sbjct: 70 FLFQLFLQGYVLHLPDLQVLNKTKYGPMWTTSFGTYTNVNLASAPLLEQVMRQEGKYPIR 129
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
++ W + H G+ + + W R L ++ P+ + L+ V DF+
Sbjct: 130 DHMDQWKDHRDHKGLTYGIFIAQGEQWYHLRQALKQRLLKPDEAALYTDALNEVISDFIT 189
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
L + + SG D+ L+ A E+IT ++F +R+G L+ + + FI +V M
Sbjct: 190 RLDQVRAESESGDQVPDMAHLLYHLALEAITYILFEKRIGCLKPSIPEDTAAFIRSVAIM 249
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQAS 964
F SV + LP L W+ ++ WD IF +K +LK + +
Sbjct: 250 FQNSVYITFLPKWTRPLL--PFWKRYLNGWDNIFSFGKKLIDEKVQELKAQLQETGPDGV 307
Query: 965 STASREMTSCSQKMLRPM-----LPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ + ++L P+ GVDTTS TL W LY ++ + +QE
Sbjct: 308 RVSGYLHFLLTNELLSTQETIGTFPELLLAGVDTTSNTLTWALYHLSKSPEIQE 361
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,727,373
Number of extensions: 1215133
Number of successful extensions: 4368
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4333
Number of HSP's successfully gapped: 6
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999592.1| cholesterol side-chain cleavage enzyme, mitocho... 647 0.0
Alignment gi|NP_999240.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mito... 124 7e-29
Alignment gi|NP_999160.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitoch... 123 2e-28
Alignment gi|NP_001230233.1| sterol 26-hydroxylase, mitochondrial precurs... 88 7e-18
>ref|NP_999592.1| cholesterol side-chain cleavage enzyme, mitochondrial precursor [Sus
scrofa].
Length = 520
Score = 647 bits (1669), Expect = 0.0
Identities = 313/349 (89%), Positives = 322/349 (92%)
Frame = +2
Query: 65 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 244
MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI
Sbjct: 1 MLARGLALRSVLVKGCQPFLSAPRECPGHPRVGTGEGACISTKTPRPFSEIPSPGDNGWI 60
Query: 245 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 424
NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER
Sbjct: 61 NLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPER 120
Query: 425 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 604
YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG
Sbjct: 121 YNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVG 180
Query: 605 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 784
VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM
Sbjct: 181 VLHRRIKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQM 240
Query: 785 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*AEKYTQNFYWDLKRKRKFNIYQAS 964
FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIF AEKYTQNFYWDL+RKR+FN Y
Sbjct: 241 FHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFNKAEKYTQNFYWDLRRKREFNNYPGI 300
Query: 965 STASREMTSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ ++ + + GGVDTTS+TL WHLYEMA +LNVQE
Sbjct: 301 LYRLLGNDKLLSEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQE 349
>ref|NP_999240.2| 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial [Sus
scrofa].
Length = 514
Score = 124 bits (312), Expect = 7e-29
Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 9/293 (3%)
Frame = +2
Query: 260 WKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVYIIDPEDVALLFKFEGPNPERYNIPP 439
WK G +K H + +KYG I+R KLG+ +SV++ P + L++ E +P+R I P
Sbjct: 75 WKG-GLKKQHDTLAEYHRKYGKIFRMKLGSFDSVHLGSPCLLEALYRTESAHPQRLEIKP 133
Query: 440 WVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRR 619
W AY + ++ G+L+ + W++ R ++M P + ++ V DF+ +
Sbjct: 134 WKAYRDYREEGYGLLILEGEDWQRVRSAFQKKLMKPMEVMKLDNKINEVLADFMSRIDEL 193
Query: 620 IKQQGSGKFSGDIREDLFRFAFESITNVIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSV 799
++G + D+ +L +++FESI V++ +R G+L++ EA FI A+ M T
Sbjct: 194 CDERGCIE---DLYSELNKWSFESICLVLYEKRFGLLQKDAGEEALNFITAIKTMMSTFG 250
Query: 800 PMLNLPPDLFRLFRTKTWRDHVAAWDTIFK*A--------EKYTQNFYWDLKRKRKFNIY 955
M+ P +L + TK W+ H AWDTIFK EKY + D +IY
Sbjct: 251 KMMVTPVELHKNLNTKVWQAHTLAWDTIFKSVKSCIDHRLEKYAEQPSADF----LCDIY 306
Query: 956 QASSTASREM-TSCSQKMLRPMLPKCWPGGVDTTSLTLPWHLYEMAPTLNVQE 1111
+ + +E+ S ++ L ++TT+ +L W LY ++ +VQ+
Sbjct: 307 HHNQLSKKELYASVTELQL---------AAIETTANSLMWILYNLSRNPHVQQ 350
>ref|NP_999160.1| 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial [Sus scrofa].
Length = 504
Score = 123 bits (308), Expect = 2e-28
Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 10/318 (3%)
Frame = +2
Query: 185 STKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREKLGNLESVY 364
S PR +++P P G+ L + + G ++H VQ ++GP++ G + +VY
Sbjct: 26 SDSAPRGLADLPGPSTPGF--LAELFCKGGLSRLHELQVQGAARFGPVWLASFGKVRTVY 83
Query: 365 IIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRLVLNTEVMA 544
+ P V L + EGP PER + PW + + Q+ G+L + W++ R +L ++
Sbjct: 84 VAAPTLVEQLLRQEGPLPERCSFSPWTEHRRRRQRSCGLLTAEGEEWQRLRSLLAPLLLR 143
Query: 545 PEAIKNFIPLLDTVSQDFVGVLHRRIKQQ-----GSGKFSGDIREDLFRFAFESITNVIF 709
P+A + L V QD V RR++ Q G D+ + ++F E I V+
Sbjct: 144 PQAAARYAGTLHDVVQDLV----RRLRSQRGLGAGPPALVRDVAGEFYKFGLEGIAAVLL 199
Query: 710 GERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDTIFK 889
G RLG LE V P+ + FI AV +F +++ + +P L RL W WD +F
Sbjct: 200 GSRLGCLEPEVPPDTETFIRAVGSVFVSTLLTMAMPSWLHRLV-PGPWARLCRDWDQMFA 258
Query: 890 *AEKYTQNFYWDLKRKRKFNIYQ-ASSTASREMTSCSQKMLRPML----PKCWPGGVDTT 1054
A+++ + + K + + S A +++ P + + GVDT
Sbjct: 259 FAQEHVERREAEAAMKSQGKPEEDLGSGAHLTYFLFREELPAPSILGNVTELLLAGVDTV 318
Query: 1055 SLTLPWHLYEMAPTLNVQ 1108
S TL W LYE++ VQ
Sbjct: 319 SNTLSWALYELSRHPEVQ 336
>ref|NP_001230233.1| sterol 26-hydroxylase, mitochondrial precursor [Sus scrofa].
Length = 537
Score = 88.2 bits (217), Expect = 7e-18
Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 5/321 (1%)
Frame = +2
Query: 161 GTGEGACISTKTPRPFSEIPSPGDNGWINLYRFWKEKGTQKIHYHHVQNFQKYGPIYREK 340
GTG G + R E+ PG L++ + +H V N KYGP++
Sbjct: 51 GTGPG----DRRLRSLKELSGPGRLRL--LFQLLAQGYVLHLHQLQVLNKAKYGPMWINY 104
Query: 341 LGNLESVYIIDPEDVALLFKFEGPNPERYNIPPWVAYHQHYQKPVGVLLKKSGAWKKDRL 520
+G V + + + + EG P R ++ W + G + +W + R
Sbjct: 105 IGPQIHVNVASAPLLEQVMRQEGKYPVRNDMDLWKEHRDLQGLTYGPFTTEGESWYRLRQ 164
Query: 521 VLNTEVMAPEAIKNFIPLLDTVSQDFVGVLHRRIKQQGSGKFSGDIREDLFRFAFESITN 700
LN ++ P + L+ V DF+ L++ + G DI + FA E+I
Sbjct: 165 ALNQRMLKPADAALYTNALNEVVDDFMVRLNQLRAESTLGDHVPDIAHQFYFFALEAICY 224
Query: 701 VIFGERLGMLEEIVDPEAQKFIDAVYQMFHTSVPMLNLPPDLFRLFRTKTWRDHVAAWDT 880
++F +R+G LE + + + F+ +V MF S+ LP L WR ++ W+T
Sbjct: 225 ILFEKRIGCLERSIPQDTKAFVRSVGFMFQNSLYATFLPKWTRPLL--PYWRRYLDGWNT 282
Query: 881 IFK*AEKYTQNFYWDLKRKRKFNIYQASSTASREMTSCSQKMLRPM-----LPKCWPGGV 1045
IF +K +++ + + + + + L P LP+ GV
Sbjct: 283 IFSFGKKLIDQKLEEIEAQLQAGGPEEPRISGYLHFLLTSGQLSPREAEGSLPELLMAGV 342
Query: 1046 DTTSLTLPWHLYEMAPTLNVQ 1108
DTTS TL W LY ++ +Q
Sbjct: 343 DTTSNTLTWALYHLSKNPEIQ 363
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,543,505
Number of extensions: 936470
Number of successful extensions: 3369
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3362
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006989
(1113 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892482.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 658 0.0
gb|GL893363.2| Sus scrofa unplaced genomic scaffold ChrUScaf1248 396 e-107
>gb|GL892482.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1342
Length = 117911
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus
Query: 3 agactcacctcatcaggccctgctgcagtgggagcagggagagtagcagtggtaggggca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112571 agactcacctcatcaggccctgctgcagtgggagcagggagagtagcagtggtaggggca 112630
Query: 63 gcatgctggccagggggcttgccctccgctcagtcctggtcaaaggctgccagcccttcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112631 gcatgctggccagggggcttgccctccgctcagtcctggtcaaaggctgccagcccttcc 112690
Query: 123 tgagtgcccctcgggagtgcccagggcatcccagggtgggcactggagagggagcatgca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112691 tgagtgcccctcgggagtgcccagggcatcccagggtgggcactggagagggagcatgca 112750
Query: 183 tctccactaaaacccctcgccccttcagtgagatcccctctcctggtgacaatggctgga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112751 tctccactaaaacccctcgccccttcagtgagatcccctctcctggtgacaatggctgga 112810
Query: 243 ttaacctgtaccgtttctggaaggagaagggcacacagaaaatccactatcaccatgtcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112811 ttaacctgtaccgtttctggaaggagaagggcacacagaaaatccactatcaccatgtcc 112870
Query: 303 agaacttccagaagtatggtcccatttacagg 334
||||||||||||||||||||||||||||||||
Sbjct: 112871 agaacttccagaagtatggtcccatttacagg 112902
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 331 cagggagaagctcggcaacttggaatctgtttatatcatcgaccctgaagatgtggccct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116234 cagggagaagctcggcaacttggaatctgtttatatcatcgaccctgaagatgtggccct 116293
Query: 391 tctctttaagttcgaaggacccaacccagaacgatacaacatcccgccctgggttgccta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116294 tctctttaagttcgaaggacccaacccagaacgatacaacatcccgccctgggttgccta 116353
Query: 451 tcaccagcattaccagaagcctgttggggtcctgctgaag 490
||||||||||||||||||||||||||||||||||||||||
Sbjct: 116354 tcaccagcattaccagaagcctgttggggtcctgctgaag 116393
>gb|GL893363.2| Sus scrofa unplaced genomic scaffold ChrUScaf1248
Length = 166125
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 490 gaagtcaggagcctggaagaaagaccggttggtcctgaacacggaggtaatggctccaga 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165950 gaagtcaggagcctggaagaaagaccggttggtcctgaacacggaggtaatggctccaga 165891
Query: 550 ggccataaagaacttcatccccctactggacacagtgtctcaggacttcgtcggcgtcct 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165890 ggccataaagaacttcatccccctactggacacagtgtctcaggacttcgtcggcgtcct 165831
Query: 610 gcacaggcgcatcaagcagcagggttctggaaagttctcaggtgacatcagggaagacct 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165830 gcacaggcgcatcaagcagcagggttctggaaagttctcaggtgacatcagggaagacct 165771
Query: 670 gtttcgcttcgcctttgagt 689
||||||||||||||||||||
Sbjct: 165770 gtttcgcttcgcctttgagt 165751
Score = 387 bits (195), Expect = e-105
Identities = 198/199 (99%)
Strand = Plus / Minus
Query: 690 ccatcaccaatgtcatatttggagagcgcctggggatgctggaggaaatagtggaccctg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164808 ccatcaccaatgtcatatttggagagcgcctggggatgctggaggaaatagtggaccctg 164749
Query: 750 aagctcagaagttcattgatgctgtctaccagatgttccacactagtgtccccatgctca 809
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164748 aggctcagaagttcattgatgctgtctaccagatgttccacactagtgtccccatgctca 164689
Query: 810 atctcccccctgacctgttccgtctgttcaggaccaagacctggagggaccatgtagccg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164688 atctcccccctgacctgttccgtctgttcaggaccaagacctggagggaccatgtagccg 164629
Query: 870 catgggacactattttcaa 888
|||||||||||||||||||
Sbjct: 164628 catgggacactattttcaa 164610
Score = 224 bits (113), Expect = 8e-56
Identities = 151/161 (93%), Gaps = 2/161 (1%)
Strand = Plus / Minus
Query: 892 agctgaaaaatacacccagaacttctactgggacctgaaacggaaaagaaaatttaacat 951
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 163828 agctgaaaaatacacccagaacttctactgggacctgagacggaaaagagaatttaacaa 163769
Query: 952 ttacc-aggcatcctctaccgcctcccgggaaatgacaagctgctctcaaaaaatgttaa 1010
||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct: 163768 ttacccaggcatcctctaccgcctcctgggaaatgacaagctgctctcagaagatgttaa 163709
Query: 1011 ggccaatgttaccaaaatgctggccagggggtgtagacacg 1051
||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 163708 ggccaatgttaccgagatgctgg-cagggggtgtagacacg 163669
Score = 79.8 bits (40), Expect = 3e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 1051 gacatccctgactctgccatggcacttgtatgaaatggcacctaccctgaatgtgcagga 1110
||||||| ||||||||| ||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 160913 gacatccatgactctgcaatggcacttgtatgagatggcacgtagcctgaatgtgcagga 160854
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,201,401
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 6
Length of query: 1113
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1092
Effective length of database: 2,808,413,156
Effective search space: 3066787166352
Effective search space used: 3066787166352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)