Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus]. 514 e-165
Alignment gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau... 418 e-132
Alignment gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus]. 425 e-129
Alignment gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru... 393 e-124
Alignment gi|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos... 339 e-113
Alignment gi|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1... 339 e-113
Alignment gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau... 350 1e-96
Alignment gi|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [B... 166 2e-44
Alignment gi|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos... 87 3e-17
Alignment gi|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taur... 87 3e-17
>ref|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus].
Length = 332
Score = 514 bits (1325), Expect(3) = e-165
Identities = 260/284 (91%), Positives = 264/284 (92%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKE WKAVHKQVVDSAYE
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWKAVHKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 284
Score = 67.8 bits (164), Expect(3) = e-165
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLT EEEA LKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDVVKVTLTHEEEACLKKSADTLWGIQKELQF 332
Score = 41.2 bits (95), Expect(3) = e-165
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKEDVFLSVPCI G+
Sbjct: 278 KGLYGIKEDVFLSVPCILGQ 297
>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
Length = 332
Score = 418 bits (1075), Expect(3) = e-132
Identities = 201/284 (70%), Positives = 242/284 (85%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK+L P+LG+D+DK+ WK +HK+VV SAYE
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWKNIHKEVVGSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
+IKLKGYTSW IGLSV DL +SI+KNLRRVHP+ST ++ S G K
Sbjct: 241 IIKLKGYTSWGIGLSVTDLVKSILKNLRRVHPVSTMVKGSYGIK 284
Score = 56.6 bits (135), Expect(3) = e-132
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NG+SDVVKV L EEEA LKKSA TLW +QK L+F
Sbjct: 295 LGRNGVSDVVKVNLNSEEEALLKKSASTLWNVQKDLKF 332
Score = 37.7 bits (86), Expect(3) = e-132
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KG YGIKE++FLS+PC+ GR
Sbjct: 278 KGSYGIKEEIFLSIPCVLGR 297
>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
Length = 334
Score = 425 bits (1093), Expect(3) = e-129
Identities = 209/283 (73%), Positives = 242/283 (85%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPACIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 44.7 bits (104), Expect(3) = e-129
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L EE A LKKSADTLWGIQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDEEVAQLKKSADTLWGIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-129
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
Length = 381
Score = 393 bits (1010), Expect(3) = e-124
Identities = 198/299 (66%), Positives = 238/299 (79%), Gaps = 1/299 (0%)
Frame = +3
Query: 72 CAPP-TPARSALPIPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISI 248
C P TP A + SK MAT+K +L+ N EE V ++KI+ +SI
Sbjct: 31 CPPAATPLGGAWAVAPASK--MATVKCELMKNFTSEEPVRNSKISIVGTGSVGMACAVSI 88
Query: 249 LMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGAR 428
L+K L+DE+ALVDV E +LKGE MDLQHGSLF++ P IVS +DY VTANS LV+ITAGAR
Sbjct: 89 LLKGLSDELALVDVDEGRLKGETMDLQHGSLFVKMPNIVSSRDYVVTANSNLVIITAGAR 148
Query: 429 QQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVI 608
Q++GE+RLNLVQRNV IFK ++ +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NRVI
Sbjct: 149 QEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVVSNPVDILTYVAWKLSAFPQNRVI 208
Query: 609 GSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELG 788
GSGCNLD+ARFR+L+G+RL +H SCHGWILGEHGDSSVPVWSGVN+AGV LK L+ ++G
Sbjct: 209 GSGCNLDTARFRFLIGQRLSIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKELNLDIG 268
Query: 789 TDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
TD D E WK VHK VV SAYE+IK+KGYT WAIGLSVADL ESI+KNLRRVHP+ST I+
Sbjct: 269 TDKDPEQWKNVHKDVVASAYEIIKMKGYTYWAIGLSVADLTESILKNLRRVHPVSTRIK 327
Score = 55.1 bits (131), Expect(3) = e-124
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG +GI+D++KV L PEEEA L+KSA TLW IQK+L+F
Sbjct: 344 LGESGITDLIKVKLAPEEEARLQKSAKTLWDIQKELKF 381
Score = 37.4 bits (85), Expect(3) = e-124
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLYGI E+VFLSVPCI G
Sbjct: 327 KGLYGINEEVFLSVPCILG 345
>ref|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 274
Score = 339 bits (870), Expect(3) = e-113
Identities = 189/284 (66%), Positives = 196/284 (69%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKE WKAVHKQVVDSAYE
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWKAVHKQVVDSAYE 182
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 183 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 226
Score = 67.8 bits (164), Expect(3) = e-113
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLT EEEA LKKSADTLWGIQK+LQF
Sbjct: 237 LGQNGISDVVKVTLTHEEEACLKKSADTLWGIQKELQF 274
Score = 41.2 bits (95), Expect(3) = e-113
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKEDVFLSVPCI G+
Sbjct: 220 KGLYGIKEDVFLSVPCILGQ 239
>ref|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1 [Bos taurus].
Length = 274
Score = 339 bits (870), Expect(3) = e-113
Identities = 189/284 (66%), Positives = 196/284 (69%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKE WKAVHKQVVDSAYE
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWKAVHKQVVDSAYE 182
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 183 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 226
Score = 67.8 bits (164), Expect(3) = e-113
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLT EEEA LKKSADTLWGIQK+LQF
Sbjct: 237 LGQNGISDVVKVTLTHEEEACLKKSADTLWGIQKELQF 274
Score = 41.2 bits (95), Expect(3) = e-113
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKEDVFLSVPCI G+
Sbjct: 220 KGLYGIKEDVFLSVPCILGQ 239
>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
Length = 241
Score = 350 bits (899), Expect = 1e-96
Identities = 167/239 (69%), Positives = 203/239 (84%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK+L P+LG+D+DK+ WK +HK+VV A+
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWKNIHKEVVGRAH 239
>ref|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [Bos taurus].
Length = 471
Score = 166 bits (421), Expect(2) = 2e-44
Identities = 102/283 (36%), Positives = 159/283 (56%)
Frame = +3
Query: 162 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 341
N E+ NKIT ++I K +AD++ L+D E KG MMDL +L
Sbjct: 173 NWANRENKTVNKITVVGGGELGIACTLAISAKGIADKLVLLDFSEGT-KGGMMDLDIFNL 231
Query: 342 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 521
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 522 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 701
LLV S PV+I+TYV WK+S FP NRVIG GCNLDS R +Y++ L W++
Sbjct: 287 AILLVASQPVEIMTYVTWKLSAFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI 346
Query: 702 GEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSW 881
GE G+ VP+WSG E T+ D + Q+ + A E++++KG SW
Sbjct: 347 GEQGEDKVPIWSG------------QEEVTNHDSQ------MQLSNRAMELLRVKGQRSW 388
Query: 882 AIGLSVADLAESIMKNLRRVHPIST*IRVSMG*KRMSSLVFLA 1010
++GLSVADL +SI+ + ++VH +S ++ G ++S VFL+
Sbjct: 389 SVGLSVADLLDSIVNDKKKVHSVSI---LAKGYYDINSEVFLS 428
Score = 32.0 bits (71), Expect(2) = 2e-44
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAH-LKKSADTLWGIQKKLQ 1122
LGT+G+S+V+K T+ E L+ SA ++ G+Q++L+
Sbjct: 433 LGTSGVSEVIKTTVKEETVTEKLQSSASSIHGLQQQLK 470
>ref|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 3e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGK 374
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 8e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 534 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
>ref|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 3e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGK 374
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 8e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 534 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,295,240
Number of extensions: 1248185
Number of successful extensions: 3834
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3830
Number of HSP's successfully gapped: 27
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A... 520 e-168
Alignment gi|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A... 507 e-164
Alignment gi|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A... 461 e-146
Alignment gi|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A... 448 e-146
Alignment gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [... 415 e-131
Alignment gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B... 428 e-128
Alignment gi|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B... 420 e-126
Alignment gi|XP_541165.1| PREDICTED: similar to lactate dehydrogenase A-l... 402 e-126
Alignment gi|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B... 419 e-125
Alignment gi|XP_533418.1| PREDICTED: similar to L-lactate dehydrogenase B... 400 e-119
>ref|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 1 [Canis familiaris].
Length = 361
Score = 520 bits (1340), Expect(3) = e-168
Identities = 261/292 (89%), Positives = 269/292 (92%)
Frame = +3
Query: 108 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 287
IPFGSKS MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSKMATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 288 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 467
VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 468 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 647
NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 648 LMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHK 827
LMGERLGVHPLSCHGW+LGEHGDSSVPVWSGVNVAGVSLKNLHP+LGTDADKE WK VHK
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKEQWKQVHK 261
Query: 828 QVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
QVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 262 QVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 313
Score = 72.4 bits (176), Expect(3) = e-168
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLTPEEEA LKKSADTLWGIQK+LQF
Sbjct: 324 LGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF 361
Score = 40.0 bits (92), Expect(3) = e-168
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIK+DVFLSVPCI G+
Sbjct: 307 KGLYGIKDDVFLSVPCILGQ 326
>ref|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 2 [Canis familiaris].
Length = 332
Score = 507 bits (1305), Expect(3) = e-164
Identities = 254/284 (89%), Positives = 262/284 (92%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGW+LGEHGDSSVPVWSGVNVAGVSLKNLHP+LGTDADKE WK VHKQVVDSAYE
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKEQWKQVHKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 284
Score = 72.4 bits (176), Expect(3) = e-164
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLTPEEEA LKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF 332
Score = 40.0 bits (92), Expect(3) = e-164
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIK+DVFLSVPCI G+
Sbjct: 278 KGLYGIKDDVFLSVPCILGQ 297
>ref|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 330
Score = 461 bits (1185), Expect(3) = e-146
Identities = 231/284 (81%), Positives = 248/284 (87%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKE+++ NKIT ISILMK+LADE+ALVDVMEDKLK
Sbjct: 1 MATLKDQLIQNLLKEDNISQNKITVIGVGAIGMTCAISILMKDLADELALVDVMEDKLKE 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQH SLF RTPKIVSGKDYNVTANS+L +ITAGA QQEGESRLNL+QRN+NIFKFI
Sbjct: 61 ETMDLQHSSLFFRTPKIVSGKDYNVTANSKLAIITAGACQQEGESRLNLIQRNLNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPV+I TYVAWKI+GFPKN +IGS CNLDSARFRYL+GERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVNIFTYVAWKITGFPKNCIIGSDCNLDSARFRYLIGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCH W+LGEHGDSSVPVWSG NVAGVSLKNLHP+LGTDADKE WK V+KQVVDSAYE
Sbjct: 181 HPLSCHRWVLGEHGDSSVPVWSGANVAGVSLKNLHPDLGTDADKEQWKEVYKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESI KN R VHPIST I+ G K
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESITKNFRWVHPISTMIKGLYGIK 284
Score = 60.5 bits (145), Expect(3) = e-146
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDV +VTLTPEEEAHLK +ADTLWGIQK+LQF
Sbjct: 295 LGQNGISDV-RVTLTPEEEAHLK-NADTLWGIQKELQF 330
Score = 40.0 bits (92), Expect(3) = e-146
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIK+DVFLSVPCI G+
Sbjct: 278 KGLYGIKDDVFLSVPCILGQ 297
>ref|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 332
Score = 448 bits (1152), Expect(3) = e-146
Identities = 230/284 (80%), Positives = 241/284 (84%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MA LKDQL NLLKE+H+P NKIT ISILMK+LA E+ALVDVMEDKLKG
Sbjct: 1 MAILKDQLTQNLLKEDHIPQNKITVVEVGAVGLACAISILMKDLAGELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRT KIVS KDYNVTANS+LV+ITAG RQQEGES LNL Q NVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTLKIVSCKDYNVTANSKLVIITAGPRQQEGESCLNLAQHNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVS+PVDILTYVAWKISGFPK V GSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSSPVDILTYVAWKISGFPKTHVFGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGW+LGEHGD+SVPV SG NVAGVSLKN HP+L TDADKE WK HKQVVDSAYE
Sbjct: 181 HPLSCHGWVLGEHGDASVPVRSGGNVAGVSLKNPHPDLATDADKEQWKEGHKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSW IGLSVA AE IMKNLR VHPIST I+ G K
Sbjct: 241 VIKLKGYTSWPIGLSVAYSAERIMKNLRWVHPISTTIKGLYGIK 284
Score = 69.7 bits (169), Expect(3) = e-146
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVK TLTPEEEA LKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDVVKGTLTPEEEARLKKSADTLWGIQKELQF 332
Score = 41.2 bits (95), Expect(3) = e-146
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKEDVFLSVPCI G+
Sbjct: 278 KGLYGIKEDVFLSVPCILGQ 297
>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
Length = 420
Score = 415 bits (1066), Expect(3) = e-131
Identities = 200/284 (70%), Positives = 237/284 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K++LI NL++E+ + KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 89 MSTVKEKLIENLIEEDKISQRKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 148
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KI SGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 149 ETMDLQHGSLFFNTSKITSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 208
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV++SP+CK+L+VSNPVDILTYV WK+SG P RV GSGCNLDSARFRYL+GE+LGV
Sbjct: 209 IPAIVQHSPDCKMLIVSNPVDILTYVVWKLSGLPATRVFGSGCNLDSARFRYLIGEKLGV 268
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTDADK+ WK +HKQVV+SAYE
Sbjct: 269 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDADKDQWKNIHKQVVESAYE 328
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
+IKLKGYTSWAIGLSV DL S++KNLRRVHP+ST ++ G K
Sbjct: 329 IIKLKGYTSWAIGLSVTDLVGSVLKNLRRVHPVSTMVKGLYGIK 372
Score = 55.5 bits (132), Expect(3) = e-131
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NG+SD+VKV L +EEA KKSADTLW +QK+L F
Sbjct: 383 LGQNGVSDIVKVNLNSDEEALFKKSADTLWNVQKELVF 420
Score = 38.5 bits (88), Expect(3) = e-131
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKE++FLS+PC+ G+
Sbjct: 366 KGLYGIKEEIFLSIPCVLGQ 385
>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) [Canis familiaris].
Length = 334
Score = 428 bits (1100), Expect(3) = e-128
Identities = 210/283 (74%), Positives = 244/283 (86%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 40.8 bits (94), Expect(3) = e-128
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A LKKSADTLW IQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-128
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 420 bits (1079), Expect(3) = e-126
Identities = 207/283 (73%), Positives = 240/283 (84%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKI + KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIAADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKRRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD + E+WK VHK VV SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNNSENWKEVHKMVVKSAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 42.7 bits (99), Expect(3) = e-126
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L T G++ V+ L +E A LKKSADTLW IQK L+ L
Sbjct: 296 LNTRGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-126
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|XP_541165.1| PREDICTED: similar to lactate dehydrogenase A-like 6B isoform 1
[Canis familiaris].
Length = 375
Score = 402 bits (1033), Expect(3) = e-126
Identities = 199/307 (64%), Positives = 244/307 (79%), Gaps = 5/307 (1%)
Frame = +3
Query: 60 RIRHCAPPTPARSALPIPFGS-----KSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXX 224
R+ P PA + P G+ S MAT++ +L+ NL EE V HNK++
Sbjct: 18 RVNRLCPQRPAGLS---PAGAWAVVPASNMATVRGELLKNLTSEEVVHHNKVSIIGTGSV 74
Query: 225 XXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRL 404
ISIL++ L DE+ALVDV EDKLK EMMDLQHGS F++ P IVS +DY VTANS L
Sbjct: 75 GMACAISILLRGLTDELALVDVNEDKLKAEMMDLQHGSPFVKMPTIVSSRDYLVTANSSL 134
Query: 405 VVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKIS 584
VVITAGARQ++GE+RLNLVQRNV IFK II NIV+YSP+CKL+VVSNPVD+LTYVAWK+S
Sbjct: 135 VVITAGARQEKGETRLNLVQRNVAIFKLIISNIVQYSPHCKLIVVSNPVDVLTYVAWKLS 194
Query: 585 GFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSL 764
FP+NR+IGSGCNLD+ARFR+L+G++LG+H SCHGW+LGEHGD+SVPVWSGVN+AGV L
Sbjct: 195 EFPQNRIIGSGCNLDTARFRFLIGQKLGIHSDSCHGWVLGEHGDTSVPVWSGVNIAGVPL 254
Query: 765 KNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH 944
K+L+ ++GT+ D E WK VHK V+ SAYE+IK+KGYTSWAIGLSVADL ESI+KNLRRVH
Sbjct: 255 KDLNSDIGTEKDPEQWKNVHKDVIASAYEIIKMKGYTSWAIGLSVADLTESILKNLRRVH 314
Query: 945 PIST*IR 965
P+ST I+
Sbjct: 315 PVSTIIK 321
Score = 55.8 bits (133), Expect(3) = e-126
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKL 1119
LG NGI+D++K+ LTPEE+A LKKSA TLW IQK+L
Sbjct: 338 LGENGIADLIKIKLTPEEQARLKKSAKTLWEIQKEL 373
Score = 33.9 bits (76), Expect(3) = e-126
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLY I E+VFLSVPC+ G
Sbjct: 321 KGLYEINEEVFLSVPCVLG 339
>ref|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 419 bits (1076), Expect(3) = e-125
Identities = 208/283 (73%), Positives = 241/283 (85%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGVACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQ GSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQDGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMVEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 IHPRSCHGWILGEHGDSSVVVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYTSWAIGLSVADL S++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTSWAIGLSVADLIASMLKNLSRIHPVSTMVKGMCG 283
Score = 41.2 bits (95), Expect(3) = e-125
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L T G++ V+ L +E A LKKSADTLW IQK L+ L
Sbjct: 296 LNTWGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL 334
Score = 30.0 bits (66), Expect(3) = e-125
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI---WG 1018
KG+ GI+ +VFLS+PCI WG
Sbjct: 279 KGMCGIENEVFLSLPCILNTWG 300
>ref|XP_533418.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 328
Score = 400 bits (1028), Expect(3) = e-119
Identities = 199/283 (70%), Positives = 235/283 (83%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISI+ K LADE+ALVDV+EDK+K
Sbjct: 1 MATLKEKLIAPVAEEEATIPNNKITVVGVGQVGMACAISIVGKSLADELALVDVLEDKIK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN---- 116
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
P IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARF Y M E+LG
Sbjct: 117 --PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFHYFMAEKLG 174
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWIL EHGDSSV +WSGVNVAGVSL+ L+PE+GTD + E+WK VHK VV+SAY
Sbjct: 175 IHPSSCHGWILEEHGDSSVALWSGVNVAGVSLQELNPEMGTDNNSENWKEVHKMVVESAY 234
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYTSWAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 235 EVIKLKGYTSWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 277
Score = 38.5 bits (88), Expect(3) = e-119
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L ++ A LKKSADTLW IQK L+ L
Sbjct: 290 LDARGLTSVINQKLKDDKFAQLKKSADTLWDIQKALKDL 328
Score = 32.3 bits (72), Expect(3) = e-119
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 273 KGMYGIENEVFLSLPCI 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,328,780
Number of extensions: 1285504
Number of successful extensions: 4015
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3997
Number of HSP's successfully gapped: 89
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [H... 510 e-163
Alignment gi|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo... 496 e-159
Alignment gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens]. 414 e-130
Alignment gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens]. 414 e-130
Alignment gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien... 428 e-128
Alignment gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens]. 428 e-128
Alignment gi|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapi... 401 e-126
Alignment gi|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens]. 401 e-126
Alignment gi|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens]. 397 e-126
Alignment gi|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [H... 421 e-118
>ref|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [Homo sapiens].
Length = 361
Score = 510 bits (1313), Expect(3) = e-163
Identities = 253/292 (86%), Positives = 267/292 (91%)
Frame = +3
Query: 108 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 287
IPFGSKS MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSNMATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 288 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 467
V+EDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 468 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 647
NVNIFKFIIPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 648 LMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHK 827
LMGERLGVHPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DKE WK VHK
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHK 261
Query: 828 QVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
QVV+SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHP+ST I+ G K
Sbjct: 262 QVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIK 313
Score = 68.2 bits (165), Expect(3) = e-163
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISD+VKVTLT EEEA LKKSADTLWGIQK+LQF
Sbjct: 324 LGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQF 361
Score = 40.0 bits (92), Expect(3) = e-163
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIK+DVFLSVPCI G+
Sbjct: 307 KGLYGIKDDVFLSVPCILGQ 326
>ref|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo sapiens].
Length = 332
Score = 496 bits (1277), Expect(3) = e-159
Identities = 246/284 (86%), Positives = 260/284 (91%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DKE WK VHKQVV+SAYE
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHP+ST I+ G K
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIK 284
Score = 68.2 bits (165), Expect(3) = e-159
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISD+VKVTLT EEEA LKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQF 332
Score = 40.0 bits (92), Expect(3) = e-159
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIK+DVFLSVPCI G+
Sbjct: 278 KGLYGIKDDVFLSVPCILGQ 297
>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 414 bits (1065), Expect(3) = e-130
Identities = 203/284 (71%), Positives = 236/284 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DKEHWK +HKQV+ SAYE
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
+IKLKGYTSWAIGLSV DL SI+KNLRRVHP+ST ++ G K
Sbjct: 241 IIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIK 284
Score = 54.3 bits (129), Expect(3) = e-130
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NG+SDVVK+ L EEEA KKSA+TLW IQK L F
Sbjct: 295 LGRNGVSDVVKINLNSEEEALFKKSAETLWNIQKDLIF 332
Score = 39.3 bits (90), Expect(3) = e-130
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKE++FLS+PC+ GR
Sbjct: 278 KGLYGIKEELFLSIPCVLGR 297
>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 414 bits (1065), Expect(3) = e-130
Identities = 203/284 (71%), Positives = 236/284 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DKEHWK +HKQV+ SAYE
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
+IKLKGYTSWAIGLSV DL SI+KNLRRVHP+ST ++ G K
Sbjct: 241 IIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIK 284
Score = 54.3 bits (129), Expect(3) = e-130
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NG+SDVVK+ L EEEA KKSA+TLW IQK L F
Sbjct: 295 LGRNGVSDVVKINLNSEEEALFKKSAETLWNIQKDLIF 332
Score = 39.3 bits (90), Expect(3) = e-130
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKE++FLS+PC+ GR
Sbjct: 278 KGLYGIKEELFLSIPCVLGR 297
>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 428 bits (1101), Expect(3) = e-128
Identities = 211/283 (74%), Positives = 244/283 (86%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 40.8 bits (94), Expect(3) = e-128
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A LKKSADTLW IQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-128
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 428 bits (1101), Expect(3) = e-128
Identities = 211/283 (74%), Positives = 244/283 (86%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 40.8 bits (94), Expect(3) = e-128
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A LKKSADTLW IQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-128
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 401 bits (1030), Expect(3) = e-126
Identities = 192/275 (69%), Positives = 230/275 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
H SCHG ILGEHGDSSVPVWSGVN+AGV LK+L+P++GTD D E W+ VHK+V+ S YE
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPEQWENVHKKVISSGYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST 956
++K+KGYTSW I LSVADL ESI+KNLRRVHP+ST
Sbjct: 241 MVKMKGYTSWGISLSVADLTESILKNLRRVHPVST 275
Score = 52.4 bits (124), Expect(3) = e-126
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQ 1122
LG NGI+D++KV LT EEEA L+KSA+TLW IQK+L+
Sbjct: 295 LGENGITDLIKVKLTLEEEACLQKSAETLWEIQKELK 331
Score = 40.4 bits (93), Expect(3) = e-126
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 956 LNKGLYGIKEDVFLSVPCIWG 1018
L+KGLYGI ED+FLSVPCI G
Sbjct: 276 LSKGLYGINEDIFLSVPCILG 296
>ref|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 401 bits (1030), Expect(3) = e-126
Identities = 192/275 (69%), Positives = 230/275 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
H SCHG ILGEHGDSSVPVWSGVN+AGV LK+L+P++GTD D E W+ VHK+V+ S YE
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPEQWENVHKKVISSGYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST 956
++K+KGYTSW I LSVADL ESI+KNLRRVHP+ST
Sbjct: 241 MVKMKGYTSWGISLSVADLTESILKNLRRVHPVST 275
Score = 52.4 bits (124), Expect(3) = e-126
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQ 1122
LG NGI+D++KV LT EEEA L+KSA+TLW IQK+L+
Sbjct: 295 LGENGITDLIKVKLTLEEEACLQKSAETLWEIQKELK 331
Score = 40.4 bits (93), Expect(3) = e-126
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 956 LNKGLYGIKEDVFLSVPCIWG 1018
L+KGLYGI ED+FLSVPCI G
Sbjct: 276 LSKGLYGINEDIFLSVPCILG 296
>ref|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens].
Length = 381
Score = 397 bits (1020), Expect(3) = e-126
Identities = 191/284 (67%), Positives = 233/284 (82%)
Frame = +3
Query: 114 FGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVM 293
F S MAT+K +LI E+ V H+K++ ISIL+K L+DE+ALVD+
Sbjct: 44 FTPVSKMATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLD 103
Query: 294 EDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNV 473
EDKLKGE MDLQHGS F + P IV KDY VTANS LV+ITAGARQ++GE+RLNLVQRNV
Sbjct: 104 EDKLKGETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNV 163
Query: 474 NIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 653
IFK +I +IV+YSP+CKL++VSNPVDILTYVAWK+S FPKNR+IGSGCNLD+ARFR+L+
Sbjct: 164 AIFKLMISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLI 223
Query: 654 GERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQV 833
G++LG+H SCHGWILGEHGDSSVPVWSGVN+AGV LK+L+ ++GTD D E WK VHK+V
Sbjct: 224 GQKLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEV 283
Query: 834 VDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
+AYE+IK+KGYTSWAIGLSVADL ESI+KNLRR+HP+ST I+
Sbjct: 284 TATAYEIIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIK 327
Score = 58.2 bits (139), Expect(3) = e-126
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQ 1122
LG NGI++++K+ LTPEEEAHLKKSA TLW IQ KL+
Sbjct: 344 LGENGITNLIKIKLTPEEEAHLKKSAKTLWEIQNKLK 380
Score = 36.6 bits (83), Expect(3) = e-126
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLYGI E+VFLS+PCI G
Sbjct: 327 KGLYGIDEEVFLSIPCILG 345
>ref|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [Homo sapiens].
Length = 241
Score = 421 bits (1083), Expect = e-118
Identities = 205/239 (85%), Positives = 218/239 (91%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
HPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DKE WK VHKQVV+ +
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVERVF 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,524,963
Number of extensions: 1278111
Number of successful extensions: 3836
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3825
Number of HSP's successfully gapped: 36
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [M... 492 e-159
Alignment gi|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus ... 488 e-158
Alignment gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus]. 430 e-129
Alignment gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like... 421 e-126
Alignment gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus]. 396 e-123
Alignment gi|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus]. 379 e-119
Alignment gi|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [M... 155 2e-42
>ref|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [Mus musculus].
Length = 361
Score = 492 bits (1267), Expect(3) = e-159
Identities = 248/282 (87%), Positives = 259/282 (91%)
Frame = +3
Query: 120 SKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMED 299
SKS MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMED
Sbjct: 26 SKSKMATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMED 85
Query: 300 KLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNI 479
KLKGEMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNI
Sbjct: 86 KLKGEMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNI 145
Query: 480 FKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
FKFIIPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE
Sbjct: 146 FKFIIPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 205
Query: 660 RLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVD 839
RLGVH LSCHGW+LGEHGDSSVPVWSGVNVAGVSLK+L+PELGTDADKE WK VHKQVVD
Sbjct: 206 RLGVHALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVD 265
Query: 840 SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+
Sbjct: 266 SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK 307
Score = 72.4 bits (176), Expect(3) = e-159
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLTPEEEA LKKSADTLWGIQK+LQF
Sbjct: 324 LGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF 361
Score = 39.3 bits (90), Expect(3) = e-159
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGI EDVFLSVPCI G+
Sbjct: 307 KGLYGINEDVFLSVPCILGQ 326
>ref|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus musculus].
Length = 332
Score = 488 bits (1255), Expect(3) = e-158
Identities = 245/278 (88%), Positives = 256/278 (92%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
H LSCHGW+LGEHGDSSVPVWSGVNVAGVSLK+L+PELGTDADKE WK VHKQVVDSAYE
Sbjct: 181 HALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK 278
Score = 72.4 bits (176), Expect(3) = e-158
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLTPEEEA LKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF 332
Score = 39.3 bits (90), Expect(3) = e-158
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGI EDVFLSVPCI G+
Sbjct: 278 KGLYGINEDVFLSVPCILGQ 297
>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
Length = 334
Score = 430 bits (1105), Expect(3) = e-129
Identities = 211/283 (74%), Positives = 244/283 (86%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI ++ +E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVADDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VVDSAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 39.7 bits (91), Expect(3) = e-129
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A L+KSADTLW IQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLRKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-129
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
musculus].
Length = 334
Score = 421 bits (1081), Expect(3) = e-126
Identities = 207/283 (73%), Positives = 242/283 (85%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI ++ ++E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVAEDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
EMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV++AG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 EEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+ G PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV SAY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVVSAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYG 283
Score = 39.7 bits (91), Expect(3) = e-126
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A L+KSADTLW IQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLRKSADTLWDIQKDLKDL 334
Score = 32.3 bits (72), Expect(3) = e-126
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
KG+YGI+ +VFLS+PCI
Sbjct: 279 KGMYGIENEVFLSLPCI 295
>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
Length = 332
Score = 396 bits (1018), Expect(3) = e-123
Identities = 189/278 (67%), Positives = 232/278 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL+ E+ + KIT ISIL+K LADE+ALVD +KL+G
Sbjct: 1 MSTVKEQLIQNLVPEDKLSRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E +DL HGSLFL TPKIV GKDYNV+ANS+LV+ITAGAR GE+RL+L+QRNV I K I
Sbjct: 61 EALDLLHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
+P IV+ SP+CK+++V+NPVDILTYV WKISGFP RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 VPGIVQNSPDCKIIIVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
+P SCHGW+LGEHGDSSVP+WSGVNVAGV+LK+L+P +GTD+DKEHWK VHKQVV+ YE
Sbjct: 181 NPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDSDKEHWKNVHKQVVEGGYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
V+ +KGYTSWAIGLSV DLA SI+KNL+RVHP++T ++
Sbjct: 241 VLNMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVK 278
Score = 52.4 bits (124), Expect(3) = e-123
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQ 1122
LG +GI+D VKV +T EEE LKKSADTLW +QK LQ
Sbjct: 295 LGQSGITDFVKVNMTAEEEGLLKKSADTLWNMQKDLQ 331
Score = 35.8 bits (81), Expect(3) = e-123
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 956 LNKGLYGIKEDVFLSVPCIWGR 1021
L KG +GIKE+VFLS+PC+ G+
Sbjct: 276 LVKGFHGIKEEVFLSIPCVLGQ 297
>ref|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus].
Length = 382
Score = 379 bits (974), Expect(3) = e-119
Identities = 178/286 (62%), Positives = 227/286 (79%)
Frame = +3
Query: 126 STMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKL 305
S+MAT+K +LI ++ EE V HNK++ I I+ K L DE+ALVD E+K+
Sbjct: 49 SSMATVKGELIQHISSEEPVLHNKVSIVGTGSVGMACAIGIIAKGLTDELALVDNNEEKM 108
Query: 306 KGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 485
KGE MDLQHGS+F++ P IV KD+ VTANS +V+ITAGARQ++ E+RLNLVQRNV IFK
Sbjct: 109 KGETMDLQHGSVFMKMPNIVCSKDFRVTANSEVVIITAGARQEKNETRLNLVQRNVTIFK 168
Query: 486 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 665
++ I+K+SP CK++VVSNPVDILT+V WK+SGFPKNR+IGSGCNLD+ARFRY++G+RL
Sbjct: 169 AMVAEIIKHSPRCKIIVVSNPVDILTFVTWKLSGFPKNRIIGSGCNLDTARFRYMLGQRL 228
Query: 666 GVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSA 845
G+H SCHGW+LGEHGDSSVPVWSGVN+AGV L+ L+ +GT D E W VHK+V+ SA
Sbjct: 229 GIHSESCHGWVLGEHGDSSVPVWSGVNIAGVPLRELNSAIGTSKDPEKWGDVHKEVIASA 288
Query: 846 YEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
Y +IK+KGYTSWAIGLSV D+AESI+KNLR+ HP++T I+ G K
Sbjct: 289 YNIIKMKGYTSWAIGLSVTDIAESILKNLRKTHPVTTKIQGLYGIK 334
Score = 51.6 bits (122), Expect(3) = e-119
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG +GISD++KV L+P EEA + KSA+T+W IQK ++F
Sbjct: 345 LGESGISDIIKVKLSPTEEAQMVKSAETIWKIQKDIKF 382
Score = 37.7 bits (86), Expect(3) = e-119
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
+GLYGIKE+VFLSVPCI G
Sbjct: 328 QGLYGIKEEVFLSVPCILG 346
>ref|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [Mus musculus].
Length = 471
Score = 155 bits (393), Expect(3) = 2e-42
Identities = 95/255 (37%), Positives = 146/255 (57%)
Frame = +3
Query: 192 NKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSG 371
NKIT ++I K +AD++ L+D+ + +G M DL +L P +
Sbjct: 183 NKITVVGSGDLGIACTLAISAKGIADKLLLLDLSDGMSQGTM-DLDIFNL----PNVEIS 237
Query: 372 KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPV 551
KD + +A+S++V+ TA + ES L+ VQ NV++F+ ++P + YS + LLV S PV
Sbjct: 238 KDLSASAHSKVVIFTANSLGGS-ESYLHAVQSNVDMFRALVPALGHYSQHAVLLVASQPV 296
Query: 552 DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPV 731
+I++YV WK+S FP RV+G GCNLDS R +Y++ L V W++GE G++ V
Sbjct: 297 EIMSYVTWKLSTFPATRVVGIGCNLDSQRLQYIITSVLKVQTSGKEVWVVGEQGENKVCS 356
Query: 732 WSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLA 911
WSG + GV L P + Q+ A E++K+KG SW++GLSVADL
Sbjct: 357 WSGRD--GV----LSP------------SSQAQLSSRAMELLKVKGQRSWSVGLSVADLV 398
Query: 912 ESIMKNLRRVHPIST 956
++I+ N R+VH +ST
Sbjct: 399 DTIINNKRKVHSVST 413
Score = 32.0 bits (71), Expect(3) = 2e-42
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 956 LNKGLYGIKEDVFLSVPCIWG 1018
L KG YG+ +VFLS+PCI G
Sbjct: 414 LAKGYYGLDNEVFLSLPCILG 434
Score = 24.3 bits (51), Expect(3) = 2e-42
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEE-EAHLKKSADTLWGIQKKLQ 1122
LGT G+S+V+K + L+ SA ++ +Q++L+
Sbjct: 433 LGTGGVSEVIKTKAGEDTVTGTLQASASSIHALQQQLE 470
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,573,605
Number of extensions: 1076494
Number of successful extensions: 3212
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3210
Number of HSP's successfully gapped: 21
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa]. 524 e-170
Alignment gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa]. 418 e-132
Alignment gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa]. 426 e-128
Alignment gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 400 e-127
Alignment gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B... 400 e-127
Alignment gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l... 429 e-122
Alignment gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 390 e-121
Alignment gi|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-l... 182 4e-46
Alignment gi|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 130 1e-30
Alignment gi|XP_003353980.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 48 7e-09
>ref|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa].
Length = 332
Score = 524 bits (1350), Expect(3) = e-170
Identities = 265/284 (93%), Positives = 266/284 (93%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLIHNLLKEEHVPHNKIT ISILMKELADEIALVDVMEDKLKG
Sbjct: 1 MATLKDQLIHNLLKEEHVPHNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLV SNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVASNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST I+ G K
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK 284
Score = 75.5 bits (184), Expect(3) = e-170
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NGISDVVKVTLTPEEEAHLKKSADTLWGIQK+LQF
Sbjct: 295 LGQNGISDVVKVTLTPEEEAHLKKSADTLWGIQKELQF 332
Score = 41.2 bits (95), Expect(3) = e-170
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKEDVFLSVPCI G+
Sbjct: 278 KGLYGIKEDVFLSVPCILGQ 297
>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
Length = 332
Score = 418 bits (1075), Expect(3) = e-132
Identities = 202/284 (71%), Positives = 240/284 (84%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KIVSGKDY+V+ANS++V++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV++SP+CK+L+VSNPVDILTYVAWK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPTIVQHSPDCKMLIVSNPVDILTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYE 851
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DK+ WK +HKQV+ SAYE
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWKNIHKQVIGSAYE 240
Query: 852 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG*K 983
+IKLKGYTSWAIGLSV DL SI+KNLRRVHP+ST ++ G K
Sbjct: 241 IIKLKGYTSWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIK 284
Score = 54.3 bits (129), Expect(3) = e-132
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG NG+SD+VKV L EEEA KKSA+TLW +QK L F
Sbjct: 295 LGRNGVSDIVKVNLNAEEEALFKKSANTLWNVQKDLTF 332
Score = 40.0 bits (92), Expect(3) = e-132
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWGR 1021
KGLYGIKE++FLS+PC+ GR
Sbjct: 278 KGLYGIKEEIFLSIPCVLGR 297
>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
Length = 334
Score = 426 bits (1096), Expect(3) = e-128
Identities = 210/283 (74%), Positives = 243/283 (85%), Gaps = 1/283 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAY 848
VHP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV+SAY
Sbjct: 181 VHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 849 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
EVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYG 283
Score = 41.6 bits (96), Expect(3) = e-128
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQFL 1128
L G++ V+ L +E A LK SADTLWGIQK L+ L
Sbjct: 296 LNARGLTSVINQKLKDDEVAQLKNSADTLWGIQKDLKDL 334
Score = 30.4 bits (67), Expect(3) = e-128
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
+G+YGI+ +VFLS+PC+
Sbjct: 279 QGMYGIENEVFLSLPCV 295
>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 400 bits (1028), Expect(3) = e-127
Identities = 202/319 (63%), Positives = 244/319 (76%), Gaps = 6/319 (1%)
Frame = +3
Query: 27 RSEYRSSCRQVRIRHCAPPTPARSALPIPFGSK------STMATLKDQLIHNLLKEEHVP 188
R+ R ++V + A AR +P G S M+T++ +L+ N EE V
Sbjct: 9 RTSQRVGAKRVNLPCPAVAPSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVH 68
Query: 189 HNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 368
NKI+ ISIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS
Sbjct: 69 SNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVS 128
Query: 369 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 548
KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNP
Sbjct: 129 SKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNP 188
Query: 549 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 728
VDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVP
Sbjct: 189 VDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVP 248
Query: 729 VWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 908
VWSGVN+AGV LKNL+ ++GTD D E WK VHK VV SAYE+IK+KGYTSWAIGLSVADL
Sbjct: 249 VWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYEIIKMKGYTSWAIGLSVADL 308
Query: 909 AESIMKNLRRVHPIST*IR 965
ESI+KNLRRVHP+ST I+
Sbjct: 309 TESILKNLRRVHPVSTRIK 327
Score = 57.4 bits (137), Expect(3) = e-127
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG +GI+D++KV LTPEEEA+L+KSA TLW IQK+L+F
Sbjct: 344 LGESGITDLIKVKLTPEEEAYLQKSAKTLWEIQKELKF 381
Score = 37.4 bits (85), Expect(3) = e-127
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLYGI E+VFLSVPCI G
Sbjct: 327 KGLYGINEEVFLSVPCILG 345
>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 400 bits (1028), Expect(3) = e-127
Identities = 202/319 (63%), Positives = 244/319 (76%), Gaps = 6/319 (1%)
Frame = +3
Query: 27 RSEYRSSCRQVRIRHCAPPTPARSALPIPFGSK------STMATLKDQLIHNLLKEEHVP 188
R+ R ++V + A AR +P G S M+T++ +L+ N EE V
Sbjct: 9 RTSQRVGAKRVNLPCPAVAPSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVH 68
Query: 189 HNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 368
NKI+ ISIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS
Sbjct: 69 SNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVS 128
Query: 369 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 548
KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNP
Sbjct: 129 SKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNP 188
Query: 549 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 728
VDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVP
Sbjct: 189 VDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVP 248
Query: 729 VWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 908
VWSGVN+AGV LKNL+ ++GTD D E WK VHK VV SAYE+IK+KGYTSWAIGLSVADL
Sbjct: 249 VWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYEIIKMKGYTSWAIGLSVADL 308
Query: 909 AESIMKNLRRVHPIST*IR 965
ESI+KNLRRVHP+ST I+
Sbjct: 309 TESILKNLRRVHPVSTRIK 327
Score = 57.4 bits (137), Expect(3) = e-127
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGIQKKLQF 1125
LG +GI+D++KV LTPEEEA+L+KSA TLW IQK+L+F
Sbjct: 344 LGESGITDLIKVKLTPEEEAYLQKSAKTLWEIQKELKF 381
Score = 37.4 bits (85), Expect(3) = e-127
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLYGI E+VFLSVPCI G
Sbjct: 327 KGLYGINEEVFLSVPCILG 345
>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
Length = 428
Score = 429 bits (1102), Expect(2) = e-122
Identities = 211/287 (73%), Positives = 246/287 (85%), Gaps = 1/287 (0%)
Frame = +3
Query: 120 SKSTMATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVME 296
++ TMATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+E
Sbjct: 90 NQRTMATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLE 149
Query: 297 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 476
DKLKGEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN
Sbjct: 150 DKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 209
Query: 477 IFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 656
+FKFIIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM
Sbjct: 210 VFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMA 269
Query: 657 ERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVV 836
E+LGVHP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D E+WK VHK VV
Sbjct: 270 EKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVV 329
Query: 837 DSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IRVSMG 977
+SAYEVIKLKGYT+WAIGLSVADL ES++KNL R+HP+ST ++ G
Sbjct: 330 ESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYG 376
Score = 30.4 bits (67), Expect(2) = e-122
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCI 1012
+G+YGI+ +VFLS+PC+
Sbjct: 372 QGMYGIENEVFLSLPCV 388
>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
scrofa].
Length = 328
Score = 390 bits (1003), Expect(3) = e-121
Identities = 193/280 (68%), Positives = 230/280 (82%), Gaps = 2/280 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T++ +L+ N EE V NKI+ ISIL+K L DE+ALVDV E +LKG
Sbjct: 1 MSTVRCELMKNFTSEEVVHSNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKG 60
Query: 312 EM--MDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 485
E MDLQHGS F++ P IVS KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK
Sbjct: 61 ETXTMDLQHGSPFVKMPNIVSSKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFK 120
Query: 486 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 665
+I +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RL
Sbjct: 121 LMISSIVQYSPRCKLIVVSNPVDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180
Query: 666 GVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSA 845
G+H SCHGWILGEHGDSSVPVWSGVN+AGV LKNL+ ++GTD D E WK VHK VV SA
Sbjct: 181 GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASA 240
Query: 846 YEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIST*IR 965
YE+IK+KGYTSWAIGLSVADL ESI+KNLRRVHP+ST I+
Sbjct: 241 YEIIKMKGYTSWAIGLSVADLTESILKNLRRVHPVSTRIK 280
Score = 48.9 bits (115), Expect(3) = e-121
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1
Query: 1012 LGTNGISDVVKVTLTPEEEAHLKKSADTLWGI 1107
LG +GI+D++KV LTPEEEA+L+KSA TLW I
Sbjct: 297 LGESGITDLIKVKLTPEEEAYLQKSAKTLWEI 328
Score = 37.4 bits (85), Expect(3) = e-121
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 962 KGLYGIKEDVFLSVPCIWG 1018
KGLYGI E+VFLSVPCI G
Sbjct: 280 KGLYGINEEVFLSVPCILG 298
>ref|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-like [Sus scrofa].
Length = 262
Score = 182 bits (461), Expect = 4e-46
Identities = 92/139 (66%), Positives = 112/139 (80%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KIVSGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNP 548
IP IV++SP+CK+L+VSNP
Sbjct: 121 IPTIVQHSPDCKMLIVSNP 139
>ref|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 375
Score = 130 bits (327), Expect = 1e-30
Identities = 72/193 (37%), Positives = 110/193 (56%)
Frame = +3
Query: 162 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 341
N +E+ +KIT ++I K +AD + L+D+ E KG MMDL +L
Sbjct: 173 NWANQENKTVSKITVVGGGELGIACTLAIAAKGIADRLVLLDLSEGT-KGGMMDLNIFNL 231
Query: 342 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 521
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 522 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 701
LLV S PV+I+TYV WK+S FP N+VIG GCNLDS R +Y++ L W++
Sbjct: 287 GVLLVASQPVEIMTYVTWKLSAFPANQVIGIGCNLDSQRLQYIITNILKAQTSGKEVWVI 346
Query: 702 GEHGDSSVPVWSG 740
GE G+ VP W G
Sbjct: 347 GEQGEDKVPTWGG 359
>ref|XP_003353980.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 189
Score = 48.1 bits (113), Expect(2) = 7e-09
Identities = 20/42 (47%), Positives = 33/42 (78%)
Frame = +3
Query: 828 QVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPIS 953
Q+ + A E++++KG SW++GLSVADL +SI+ + R+VH +S
Sbjct: 89 QLSNRAMELLRVKGQRSWSVGLSVADLVDSIVNDKRKVHSVS 130
Score = 30.0 bits (66), Expect(2) = 7e-09
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 956 LNKGLYGIKEDVFLSVPCIWG 1018
L KG Y I +VFLS+PCI G
Sbjct: 132 LAKGYYDINTEVFLSLPCILG 152
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,158,779
Number of extensions: 801032
Number of successful extensions: 2623
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2616
Number of HSP's successfully gapped: 24
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006992
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 349 2e-93
gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533 240 1e-60
Sscrofa_Chr01 240 1e-60
>Sscrofa_Chr02
|| Length = 162569375
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 374 agactataacgtgactgcaaactctaggctggttgttatcacagctggggcacgtcagca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904376 agactataacgtgactgcaaactctaggctggttgttatcacagctggggcacgtcagca 43904435
Query: 434 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904436 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 43904495
Query: 494 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904496 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 43904551
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 548 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905330 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 43905389
Query: 608 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905390 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 43905449
Query: 668 agttcaccccctaagctgtcatgggtggatccttggggagcatggagactctagtg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905450 agttcaccccctaagctgtcatgggtggatccttggggagcatggagactctagtg 43905505
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 107 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900596 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 43900655
Query: 167 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900656 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 43900715
Query: 227 catggcttgtgccatcagtatcttaatgaagg 258
||||||||||||||||||||||||||||||||
Sbjct: 43900716 catggcttgtgccatcagtatcttaatgaagg 43900747
Score = 258 bits (130), Expect = 6e-66
Identities = 166/179 (92%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 963 agggtctctatgggataaaagaggatgtcttccttagtgttccttgcatctggggac-ga 1021
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 43908713 agggtctctatgggataaaagaggatgtcttccttagtgttccttgcatcttgggacaga 43908772
Query: 1022 atggaatctcagatgttgtgaaagtgactctgactcctgaggaagaagctcatttgaaga 1081
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43908773 atggaatctcagatgttgtgaaagtgactctgactcctgaggaagaggctcatttgaaga 43908832
Query: 1082 agagtgcagataccctttgggggattcnnnnnnngctgcaatttttaagtctctcataa 1140
||||||||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct: 43908833 agagtgcagatacactttgggggatccagaaagagctgcaattttaaagtctctcataa 43908891
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 256 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903297 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 43903356
Query: 316 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903357 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 43903416
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 723 gtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaagaatctgcaccctgaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906179 gtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaagaatctgcaccctgaa 43906238
Query: 783 ttaggcactgatgcagataaggaacactggaaagcagttcacaaacaggtggtggacag 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906239 ttaggcactgatgcagataaggaacactggaaagcagttcacaaacaggtggtggacag 43906297
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 838 acagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattggactatctg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907758 acagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattggactatctg 43907817
Query: 898 tggcagatctggcagaaagtataatgaagaatcttaggcgggtgcatccgatttccacc 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907818 tggcagatctggcagaaagtataatgaagaatcttaggcgggtgcatccgatttccacc 43907876
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 ttgcttttaaggcccctcccgcttcgcgctcggagtaccggagcagctgccgccaagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43898253 ttgcttttaaggcccctcccgcttcgcgctcggagtaccggagcagctgccgccaagtcc 43898312
Query: 61 ggatccgacactgtgcgcctcccacgcccgcccgaagtgcactcccg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43898313 ggatccgacactgtgcgcctcccacgcccgcccgaagtgcactcccg 43898359
Score = 73.8 bits (37), Expect = 2e-10
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 548 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 607
||||||||| |||||||| || ||||||||| |||||||||| || || ||||| ||
Sbjct: 43709921 agtggatattttgacctacgttgcttggaagttaagtggcttacctgcaactcgtgtaat 43709980
Query: 608 tggaagtggttgcaatttggattcagcccggttccgttacctaat 652
|||||||||||| ||| | || || ||||| ||||||||||||||
Sbjct: 43709981 tggaagtggttgtaatctagactctgcccgtttccgttacctaat 43710025
>gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533
Length = 59217
Score = 240 bits (121), Expect = 1e-60
Identities = 482/601 (80%), Gaps = 1/601 (0%)
Strand = Plus / Minus
Query: 409 ttatcacagctggggcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 468
|||||||||| || ||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 1417 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 1358
Query: 469 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 528
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 1357 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 1298
Query: 529 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 588
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 1297 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 1238
Query: 589 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 648
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 1237 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 1178
Query: 649 taatgggggaaaggctgggagttcaccccctaagctgtcatgggtggatccttggggagc 708
| || ||| | ||||| || | ||| | |||||||||||||||||||||||| ||||
Sbjct: 1177 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 1118
Query: 709 atggagactctagtgtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaaga 768
|||||||||| ||||| ||||||||||| ||||| || | ||||||||| | |||||||
Sbjct: 1117 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 1058
Query: 769 atctgcaccctgaattaggcactgatgcagataaggaacactggaaagcagttcacaaac 828
||||| || || |||| |||||| |||| || || |||||| |||||||||
Sbjct: 1057 atctgaacttagatataggaactgataaagatcctgagcagtggaaaaatgttcacaaag 998
Query: 829 aggtggtggacagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattg 888
| ||||| | ||||| |||||| | || ||| ||||||| ||||| || ||||||||||
Sbjct: 997 atgtggttgctagtgcctatgagattattaaaatgaaaggttacacttcttgggccattg 938
Query: 889 gactatctgtggcagatctggcagaaagtataatgaagaatcttaggcgggtgcatccga 948
| ||||| || || ||| | |||||||||| ||||||||||||| | ||||||||
Sbjct: 937 gcctatcagtagctgatttaacagaaagtattttgaagaatcttagaagagtgcatccag 878
Query: 949 tttccacctgaa-taagggtctctatgggataaaagaggatgtcttccttagtgttcctt 1007
|||||||| ||| ||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 877 tttccaccagaattaagggtctctatgggataaatgaagaagtgttcctcagtgttcctt 818
Query: 1008 g 1008
|
Sbjct: 817 g 817
>Sscrofa_Chr01
|| Length = 315321322
Score = 240 bits (121), Expect = 1e-60
Identities = 482/601 (80%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 409 ttatcacagctggggcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 468
|||||||||| || ||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 11733277 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 11733336
Query: 469 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 528
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 11733337 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 11733396
Query: 529 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 588
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 11733397 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 11733456
Query: 589 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 648
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 11733457 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 11733516
Query: 649 taatgggggaaaggctgggagttcaccccctaagctgtcatgggtggatccttggggagc 708
| || ||| | ||||| || | ||| | |||||||||||||||||||||||| ||||
Sbjct: 11733517 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 11733576
Query: 709 atggagactctagtgtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaaga 768
|||||||||| ||||| ||||||||||| ||||| || | ||||||||| | |||||||
Sbjct: 11733577 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 11733636
Query: 769 atctgcaccctgaattaggcactgatgcagataaggaacactggaaagcagttcacaaac 828
||||| || || |||| |||||| |||| || || |||||| |||||||||
Sbjct: 11733637 atctgaacttagatataggaactgataaagatcctgagcagtggaaaaatgttcacaaag 11733696
Query: 829 aggtggtggacagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattg 888
| ||||| | ||||| |||||| | || ||| ||||||| ||||| || ||||||||||
Sbjct: 11733697 atgtggttgctagtgcctatgagattattaaaatgaaaggttacacttcttgggccattg 11733756
Query: 889 gactatctgtggcagatctggcagaaagtataatgaagaatcttaggcgggtgcatccga 948
| ||||| || || ||| | |||||||||| ||||||||||||| | ||||||||
Sbjct: 11733757 gcctatcagtagctgatttaacagaaagtattttgaagaatcttagaagagtgcatccag 11733816
Query: 949 tttccacctgaa-taagggtctctatgggataaaagaggatgtcttccttagtgttcctt 1007
|||||||| ||| ||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 11733817 tttccaccagaattaagggtctctatgggataaatgaagaagtgttcctcagtgttcctt 11733876
Query: 1008 g 1008
|
Sbjct: 11733877 g 11733877
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,035,781
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 15
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)