Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus]. 397 e-133
Alignment gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus]. 326 e-106
Alignment gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau... 318 e-103
Alignment gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru... 297 7e-97
Alignment gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau... 318 5e-87
Alignment gi|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos... 221 2e-80
Alignment gi|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1... 221 2e-80
Alignment gi|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [B... 133 2e-37
Alignment gi|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos... 87 2e-17
Alignment gi|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taur... 87 2e-17
>ref|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus].
Length = 332
Score = 397 bits (1019), Expect(3) = e-133
Identities = 197/217 (90%), Positives = 202/217 (93%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGWILGEHGDSSVPVWS +NVAGVSLKNLHP+
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 217
Score = 92.4 bits (228), Expect(3) = e-133
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K+D
Sbjct: 227 WKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKED 286
Query: 971 V 973
V
Sbjct: 287 V 287
Score = 25.8 bits (55), Expect(3) = e-133
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ KAVH +
Sbjct: 216 PELGTDADKEQWKAVHKQ 233
>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
Length = 334
Score = 326 bits (836), Expect(2) = e-106
Identities = 161/218 (73%), Positives = 186/218 (85%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPACIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 79.0 bits (193), Expect(2) = e-106
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
Length = 332
Score = 318 bits (815), Expect(3) = e-103
Identities = 153/216 (70%), Positives = 183/216 (84%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK+L P
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDP 216
Score = 76.3 bits (186), Expect(3) = e-103
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ ++VV SAYE+IKLK YTSW GLSV DL +SI +NL RVHP+S M+K YG K++
Sbjct: 227 WKNIHKEVVGSAYEIIKLKGYTSWGIGLSVTDLVKSILKNLRRVHPVSTMVKGSYGIKEE 286
Query: 971 V 973
+
Sbjct: 287 I 287
Score = 22.3 bits (46), Expect(3) = e-103
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVH 806
P LG+D++KD+ K +H
Sbjct: 216 PKLGSDSDKDSWKNIH 231
>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
Length = 381
Score = 297 bits (761), Expect(2) = 7e-97
Identities = 151/238 (63%), Positives = 185/238 (77%), Gaps = 1/238 (0%)
Frame = +1
Query: 55 CAPP-TPARSALPIPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISI 231
C P TP A + SK MAT+K +L+ N EE V ++KI+ +SI
Sbjct: 31 CPPAATPLGGAWAVAPASK--MATVKCELMKNFTSEEPVRNSKISIVGTGSVGMACAVSI 88
Query: 232 LMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGAR 411
L+K L+DE+ALVDV E +LKGE MDLQHGSLF++ P IVS +DY VTANS LV+ITAGAR
Sbjct: 89 LLKGLSDELALVDVDEGRLKGETMDLQHGSLFVKMPNIVSSRDYVVTANSNLVIITAGAR 148
Query: 412 QQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVI 591
Q++GE+RLNLVQRNV IFK ++ +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NRVI
Sbjct: 149 QEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVVSNPVDILTYVAWKLSAFPQNRVI 208
Query: 592 GSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
GSGCNLD+ARFR+L+G+RL +H SCHGWILGEHGDSSVPVWS +N+AGV LK L+ D
Sbjct: 209 GSGCNLDTARFRFLIGQRLSIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKELNLD 266
Score = 75.9 bits (185), Expect(2) = 7e-97
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ + VV SAYE+IK+K YT WA GLSVADL ESI +NL RVHP+S IK LYG ++
Sbjct: 276 WKNVHKDVVASAYEIIKMKGYTYWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEE 335
Query: 971 V 973
V
Sbjct: 336 V 336
>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
Length = 241
Score = 318 bits (815), Expect = 5e-87
Identities = 153/216 (70%), Positives = 183/216 (84%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK+L P
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDP 216
>ref|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 274
Score = 221 bits (564), Expect(3) = 2e-80
Identities = 126/217 (58%), Positives = 134/217 (61%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGWILGEHGDSSVPVWS +NVAGVSLKNLHP+
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 159
Score = 92.4 bits (228), Expect(3) = 2e-80
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K+D
Sbjct: 169 WKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKED 228
Query: 971 V 973
V
Sbjct: 229 V 229
Score = 25.8 bits (55), Expect(3) = 2e-80
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ KAVH +
Sbjct: 158 PELGTDADKEQWKAVHKQ 175
>ref|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1 [Bos taurus].
Length = 274
Score = 221 bits (564), Expect(3) = 2e-80
Identities = 126/217 (58%), Positives = 134/217 (61%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGWILGEHGDSSVPVWS +NVAGVSLKNLHP+
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 159
Score = 92.4 bits (228), Expect(3) = 2e-80
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K+D
Sbjct: 169 WKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKED 228
Query: 971 V 973
V
Sbjct: 229 V 229
Score = 25.8 bits (55), Expect(3) = 2e-80
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ KAVH +
Sbjct: 158 PELGTDADKEQWKAVHKQ 175
>ref|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [Bos taurus].
Length = 471
Score = 133 bits (335), Expect(2) = 2e-37
Identities = 74/192 (38%), Positives = 110/192 (57%)
Frame = +1
Query: 145 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 324
N E+ NKIT ++I K +AD++ L+D E KG MMDL +L
Sbjct: 173 NWANRENKTVNKITVVGGGELGIACTLAISAKGIADKLVLLDFSEGT-KGGMMDLDIFNL 231
Query: 325 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 504
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 505 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 684
LLV S PV+I+TYV WK+S FP NRVIG GCNLDS R +Y++ L W++
Sbjct: 287 AILLVASQPVEIMTYVTWKLSAFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI 346
Query: 685 GEHGDSSVPVWS 720
GE G+ VP+WS
Sbjct: 347 GEQGEDKVPIWS 358
Score = 41.2 bits (95), Expect(2) = 2e-37
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +2
Query: 809 QVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKDV 973
Q+ + A E++++K SW+ GLSVADL +SI + +VH +S + K Y +V
Sbjct: 371 QLSNRAMELLRVKGQRSWSVGLSVADLLDSIVNDKKKVHSVSILAKGYYDINSEV 425
>ref|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 2e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGK 357
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 6e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +1
Query: 517 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 642
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
>ref|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 2e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGK 357
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 6e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +1
Query: 517 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 642
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,040,677
Number of extensions: 1073195
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 25
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A... 407 e-135
Alignment gi|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A... 394 e-131
Alignment gi|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A... 357 e-118
Alignment gi|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A... 352 e-114
Alignment gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B... 329 e-107
Alignment gi|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B... 324 e-105
Alignment gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [... 311 e-103
Alignment gi|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B... 321 e-103
Alignment gi|XP_535075.1| PREDICTED: similar to L-lactate dehydrogenase B... 318 e-103
Alignment gi|XP_862294.1| PREDICTED: similar to L-lactate dehydrogenase B... 311 e-100
>ref|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 1 [Canis familiaris].
Length = 361
Score = 407 bits (1046), Expect(3) = e-135
Identities = 201/225 (89%), Positives = 208/225 (92%)
Frame = +1
Query: 91 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 270
IPFGSKS MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSKMATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 271 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 450
VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 451 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 630
NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 631 LMGERLGVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
LMGERLGVHPLSCHGW+LGEHGDSSVPVWS +NVAGVSLKNLHPD
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPD 246
Score = 91.3 bits (225), Expect(3) = e-135
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K D
Sbjct: 256 WKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDD 315
Query: 971 V 973
V
Sbjct: 316 V 316
Score = 23.9 bits (50), Expect(3) = e-135
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ K VH +
Sbjct: 245 PDLGTDADKEQWKQVHKQ 262
>ref|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 2 [Canis familiaris].
Length = 332
Score = 394 bits (1011), Expect(3) = e-131
Identities = 194/217 (89%), Positives = 201/217 (92%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGW+LGEHGDSSVPVWS +NVAGVSLKNLHPD
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPD 217
Score = 91.3 bits (225), Expect(3) = e-131
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K D
Sbjct: 227 WKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDD 286
Query: 971 V 973
V
Sbjct: 287 V 287
Score = 23.9 bits (50), Expect(3) = e-131
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ K VH +
Sbjct: 216 PDLGTDADKEQWKQVHKQ 233
>ref|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 330
Score = 357 bits (915), Expect(2) = e-118
Identities = 176/217 (81%), Positives = 190/217 (87%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKE+++ NKIT ISILMK+LADE+ALVDVMEDKLK
Sbjct: 1 MATLKDQLIQNLLKEDNISQNKITVIGVGAIGMTCAISILMKDLADELALVDVMEDKLKE 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQH SLF RTPKIVSGKDYNVTANS+L +ITAGA QQEGESRLNL+QRN+NIFKFI
Sbjct: 61 ETMDLQHSSLFFRTPKIVSGKDYNVTANSKLAIITAGACQQEGESRLNLIQRNLNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSPNCKLLVVSNPV+I TYVAWKI+GFPKN +IGS CNLDSARFRYL+GERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVNIFTYVAWKITGFPKNCIIGSDCNLDSARFRYLIGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCH W+LGEHGDSSVPVWS NVAGVSLKNLHPD
Sbjct: 181 HPLSCHRWVLGEHGDSSVPVWSGANVAGVSLKNLHPD 217
Score = 87.0 bits (214), Expect(2) = e-118
Identities = 46/61 (75%), Positives = 48/61 (78%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVVDSAYEVIKLK YTSWA GLSVADLAESI +N VHPIS MIK LYG K D
Sbjct: 227 WKEVYKQVVDSAYEVIKLKGYTSWAIGLSVADLAESITKNFRWVHPISTMIKGLYGIKDD 286
Query: 971 V 973
V
Sbjct: 287 V 287
>ref|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 332
Score = 352 bits (904), Expect(2) = e-114
Identities = 178/217 (82%), Positives = 187/217 (86%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MA LKDQL NLLKE+H+P NKIT ISILMK+LA E+ALVDVMEDKLKG
Sbjct: 1 MAILKDQLTQNLLKEDHIPQNKITVVEVGAVGLACAISILMKDLAGELALVDVMEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRT KIVS KDYNVTANS+LV+ITAG RQQEGES LNL Q NVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTLKIVSCKDYNVTANSKLVIITAGPRQQEGESCLNLAQHNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSPNCKLLVVS+PVDILTYVAWKISGFPK V GSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSSPVDILTYVAWKISGFPKTHVFGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGW+LGEHGD+SVPV S NVAGVSLKN HPD
Sbjct: 181 HPLSCHGWVLGEHGDASVPVRSGGNVAGVSLKNPHPD 217
Score = 80.5 bits (197), Expect(2) = e-114
Identities = 43/61 (70%), Positives = 46/61 (75%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK G +QVVDSAYEVIKLK YTSW GLSVA AE I +NL VHPIS IK LYG K+D
Sbjct: 227 WKEGHKQVVDSAYEVIKLKGYTSWPIGLSVAYSAERIMKNLRWVHPISTTIKGLYGIKED 286
Query: 971 V 973
V
Sbjct: 287 V 287
>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) [Canis familiaris].
Length = 334
Score = 329 bits (843), Expect(2) = e-107
Identities = 162/218 (74%), Positives = 188/218 (86%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 79.0 bits (193), Expect(2) = e-107
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 324 bits (830), Expect(3) = e-105
Identities = 160/218 (73%), Positives = 185/218 (84%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKI + KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIAADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKRRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 77.8 bits (190), Expect(3) = e-105
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVKSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
Score = 21.9 bits (45), Expect(3) = e-105
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 747 EESAP*LGTDANKDTGKAVH 806
+E P +GTD N + K VH
Sbjct: 213 QELNPEMGTDNNSENWKEVH 232
>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
Length = 420
Score = 311 bits (798), Expect(3) = e-103
Identities = 150/216 (69%), Positives = 178/216 (82%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K++LI NL++E+ + KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 89 MSTVKEKLIENLIEEDKISQRKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 148
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGSLF T KI SGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 149 ETMDLQHGSLFFNTSKITSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 208
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV++SP+CK+L+VSNPVDILTYV WK+SG P RV GSGCNLDSARFRYL+GE+LGV
Sbjct: 209 IPAIVQHSPDCKMLIVSNPVDILTYVVWKLSGLPATRVFGSGCNLDSARFRYLIGEKLGV 268
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK L P
Sbjct: 269 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDP 304
Score = 80.9 bits (198), Expect(3) = e-103
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ +QVV+SAYE+IKLK YTSWA GLSV DL S+ +NL RVHP+S M+K LYG K++
Sbjct: 315 WKNIHKQVVESAYEIIKLKGYTSWAIGLSVTDLVGSVLKNLRRVHPVSTMVKGLYGIKEE 374
Query: 971 V 973
+
Sbjct: 375 I 375
Score = 24.6 bits (52), Expect(3) = e-103
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+KD K +H +
Sbjct: 304 PKLGTDADKDQWKNIHKQ 321
>ref|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 321 bits (822), Expect(2) = e-103
Identities = 160/218 (73%), Positives = 186/218 (85%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGVACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQ GSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQDGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMVEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPRSCHGWILGEHGDSSVVVWSGVNVAGVSLQELNPE 218
Score = 74.3 bits (181), Expect(2) = e-103
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YTSWA GLSVADL S+ +NL R+HP+S M+K + G +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTSWAIGLSVADLIASMLKNLSRIHPVSTMVKGMCGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|XP_535075.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 329
Score = 318 bits (814), Expect(2) = e-103
Identities = 154/217 (70%), Positives = 182/217 (83%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLK++LI + +E +P+NKIT ISIL K LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKEKLIAPVAEEAAIPNNKITIVGVGQVGMACAISILGKSLADELALVDVLEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHG LFL+TPKIV+ DY+VTANS+++V+TAG RQQEG+S LNLVQRNVN+FKFI
Sbjct: 61 EMMDLQHGCLFLQTPKIVADNDYSVTANSKIMVVTAGVRQQEGKSHLNLVQRNVNVFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARF YLM E+L +
Sbjct: 121 IPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFHYLMAEKLRI 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 HPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 217
Score = 76.6 bits (187), Expect(2) = e-103
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK +VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG K
Sbjct: 226 NWK----EVVESAYEVIKLKEYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIKS 281
Query: 968 DV 973
+V
Sbjct: 282 EV 283
>ref|XP_862294.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 4 [Canis familiaris].
Length = 312
Score = 311 bits (797), Expect(2) = e-100
Identities = 154/208 (74%), Positives = 176/208 (84%), Gaps = 1/208 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKI + KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIAADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKRRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVA 735
+HP SCHGWILGEHGDSSV VWS +NVA
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVA 208
Score = 72.8 bits (177), Expect(2) = e-100
Identities = 35/56 (62%), Positives = 45/56 (80%)
Frame = +2
Query: 806 QQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKDV 973
+ VV SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG + +V
Sbjct: 211 KMVVKSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEV 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,698,829
Number of extensions: 1102011
Number of successful extensions: 3195
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3184
Number of HSP's successfully gapped: 76
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [H... 401 e-132
Alignment gi|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo... 387 e-128
Alignment gi|NP_001158887.1| L-lactate dehydrogenase A chain isoform 4 [H... 387 e-108
Alignment gi|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [H... 387 e-108
Alignment gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien... 329 e-107
Alignment gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens]. 329 e-107
Alignment gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens]. 309 e-102
Alignment gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens]. 309 e-102
Alignment gi|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapi... 311 2e-99
Alignment gi|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens]. 311 2e-99
>ref|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [Homo sapiens].
Length = 361
Score = 401 bits (1030), Expect(2) = e-132
Identities = 197/225 (87%), Positives = 207/225 (92%)
Frame = +1
Query: 91 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 270
IPFGSKS MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSNMATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 271 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 450
V+EDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 451 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 630
NVNIFKFIIPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 631 LMGERLGVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
LMGERLGVHPLSCHGW+LGEHGDSSVPVWS +NVAGVSLK LHPD
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPD 246
Score = 89.4 bits (220), Expect(2) = e-132
Identities = 46/61 (75%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVV+SAYEVIKLK YTSWA GLSVADLAESI +NL RVHP+S MIK LYG K D
Sbjct: 256 WKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDD 315
Query: 971 V 973
V
Sbjct: 316 V 316
>ref|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo sapiens].
Length = 332
Score = 387 bits (994), Expect(2) = e-128
Identities = 190/217 (87%), Positives = 200/217 (92%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGW+LGEHGDSSVPVWS +NVAGVSLK LHPD
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPD 217
Score = 89.4 bits (220), Expect(2) = e-128
Identities = 46/61 (75%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVV+SAYEVIKLK YTSWA GLSVADLAESI +NL RVHP+S MIK LYG K D
Sbjct: 227 WKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDD 286
Query: 971 V 973
V
Sbjct: 287 V 287
>ref|NP_001158887.1| L-lactate dehydrogenase A chain isoform 4 [Homo sapiens].
Length = 274
Score = 387 bits (995), Expect = e-108
Identities = 201/261 (77%), Positives = 214/261 (81%), Gaps = 5/261 (1%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD*ALMQIRT--LEKRFTTG---GG 819
HPLSCHGW+LGEHGDSSVPVWS +NVAGVSLK LHPD + + E R+T G G
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKECRYTLGDPKGA 240
Query: 820 QCL*GDQTEKLHVLGPWTICG 882
L H LG I G
Sbjct: 241 AILKSSDVISFHCLGYNRILG 261
>ref|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [Homo sapiens].
Length = 241
Score = 387 bits (994), Expect = e-108
Identities = 190/217 (87%), Positives = 200/217 (92%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGW+LGEHGDSSVPVWS +NVAGVSLK LHPD
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPD 217
>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 329 bits (844), Expect(2) = e-107
Identities = 163/218 (74%), Positives = 188/218 (86%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 79.0 bits (193), Expect(2) = e-107
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 329 bits (844), Expect(2) = e-107
Identities = 163/218 (74%), Positives = 188/218 (86%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 79.0 bits (193), Expect(2) = e-107
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 309 bits (792), Expect(2) = e-102
Identities = 152/216 (70%), Positives = 177/216 (81%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK L P
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDP 216
Score = 82.0 bits (201), Expect(2) = e-102
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
HWK+ +QV+ SAYE+IKLK YTSWA GLSV DL SI +NL RVHP+S M+K LYG K+
Sbjct: 226 HWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKE 285
Query: 968 DV 973
++
Sbjct: 286 EL 287
>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 309 bits (792), Expect(2) = e-102
Identities = 152/216 (70%), Positives = 177/216 (81%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK L P
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDP 216
Score = 82.0 bits (201), Expect(2) = e-102
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
HWK+ +QV+ SAYE+IKLK YTSWA GLSV DL SI +NL RVHP+S M+K LYG K+
Sbjct: 226 HWKNIHKQVIQSAYEIIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKE 285
Query: 968 DV 973
++
Sbjct: 286 EL 287
>ref|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 311 bits (796), Expect(2) = 2e-99
Identities = 151/217 (69%), Positives = 180/217 (82%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
H SCHG ILGEHGDSSVPVWS +N+AGV LK+L+PD
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPD 217
Score = 70.9 bits (172), Expect(2) = 2e-99
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
W++ ++V+ S YE++K+K YTSW LSVADL ESI +NL RVHP+S + K LYG +D
Sbjct: 227 WENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGLYGINED 286
Query: 971 V 973
+
Sbjct: 287 I 287
>ref|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 311 bits (796), Expect(2) = 2e-99
Identities = 151/217 (69%), Positives = 180/217 (82%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
H SCHG ILGEHGDSSVPVWS +N+AGV LK+L+PD
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPD 217
Score = 70.9 bits (172), Expect(2) = 2e-99
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
W++ ++V+ S YE++K+K YTSW LSVADL ESI +NL RVHP+S + K LYG +D
Sbjct: 227 WENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGLYGINED 286
Query: 971 V 973
+
Sbjct: 287 I 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,066,622
Number of extensions: 1098652
Number of successful extensions: 2954
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2949
Number of HSP's successfully gapped: 27
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [M... 377 e-125
Alignment gi|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus ... 372 e-124
Alignment gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus]. 329 e-108
Alignment gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like... 323 e-105
Alignment gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus]. 297 8e-97
Alignment gi|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus]. 292 2e-93
Alignment gi|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [M... 120 3e-35
>ref|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [Mus musculus].
Length = 361
Score = 377 bits (967), Expect(3) = e-125
Identities = 188/221 (85%), Positives = 200/221 (90%)
Frame = +1
Query: 103 SKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMED 282
SKS MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMED
Sbjct: 26 SKSKMATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMED 85
Query: 283 KLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNI 462
KLKGEMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNI
Sbjct: 86 KLKGEMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNI 145
Query: 463 FKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 642
FKFIIPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE
Sbjct: 146 FKFIIPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 205
Query: 643 RLGVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
RLGVH LSCHGW+LGEHGDSSVPVWS +NVAGVSLK+L+P+
Sbjct: 206 RLGVHALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPE 246
Score = 90.1 bits (222), Expect(3) = e-125
Identities = 47/61 (77%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG +D
Sbjct: 256 WKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGINED 315
Query: 971 V 973
V
Sbjct: 316 V 316
Score = 23.9 bits (50), Expect(3) = e-125
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ K VH +
Sbjct: 245 PELGTDADKEQWKEVHKQ 262
>ref|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus musculus].
Length = 332
Score = 372 bits (955), Expect(3) = e-124
Identities = 185/217 (85%), Positives = 197/217 (90%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
H LSCHGW+LGEHGDSSVPVWS +NVAGVSLK+L+P+
Sbjct: 181 HALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPE 217
Score = 90.1 bits (222), Expect(3) = e-124
Identities = 47/61 (77%), Positives = 50/61 (81%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG +D
Sbjct: 227 WKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGINED 286
Query: 971 V 973
V
Sbjct: 287 V 287
Score = 23.9 bits (50), Expect(3) = e-124
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ K VH +
Sbjct: 216 PELGTDADKEQWKEVHKQ 233
>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
Length = 334
Score = 329 bits (844), Expect(2) = e-108
Identities = 162/218 (74%), Positives = 188/218 (86%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI ++ +E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVADDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 80.5 bits (197), Expect(2) = e-108
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VVDSAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVDSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
musculus].
Length = 334
Score = 323 bits (829), Expect(2) = e-105
Identities = 159/218 (72%), Positives = 187/218 (85%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI ++ ++E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVAEDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
EMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV++AG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 EEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+ G PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
+HP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 77.0 bits (188), Expect(2) = e-105
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M+K +YG +
Sbjct: 227 NWKEVHKMVVVSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
Length = 332
Score = 297 bits (761), Expect(2) = 8e-97
Identities = 144/216 (66%), Positives = 177/216 (81%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K+QLI NL+ E+ + KIT ISIL+K LADE+ALVD +KL+G
Sbjct: 1 MSTVKEQLIQNLVPEDKLSRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E +DL HGSLFL TPKIV GKDYNV+ANS+LV+ITAGAR GE+RL+L+QRNV I K I
Sbjct: 61 EALDLLHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
+P IV+ SP+CK+++V+NPVDILTYV WKISGFP RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 VPGIVQNSPDCKIIIVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
+P SCHGW+LGEHGDSSVP+WS +NVAGV+LK+L+P
Sbjct: 181 NPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNP 216
Score = 75.5 bits (184), Expect(2) = 8e-97
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
HWK+ +QVV+ YEV+ +K YTSWA GLSV DLA SI +NL RVHP++ ++K +G K+
Sbjct: 226 HWKNVHKQVVEGGYEVLNMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKE 285
Query: 968 DV 973
+V
Sbjct: 286 EV 287
>ref|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus].
Length = 382
Score = 292 bits (747), Expect(2) = 2e-93
Identities = 135/217 (62%), Positives = 174/217 (80%)
Frame = +1
Query: 109 STMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKL 288
S+MAT+K +LI ++ EE V HNK++ I I+ K L DE+ALVD E+K+
Sbjct: 49 SSMATVKGELIQHISSEEPVLHNKVSIVGTGSVGMACAIGIIAKGLTDELALVDNNEEKM 108
Query: 289 KGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 468
KGE MDLQHGS+F++ P IV KD+ VTANS +V+ITAGARQ++ E+RLNLVQRNV IFK
Sbjct: 109 KGETMDLQHGSVFMKMPNIVCSKDFRVTANSEVVIITAGARQEKNETRLNLVQRNVTIFK 168
Query: 469 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 648
++ I+K+SP CK++VVSNPVDILT+V WK+SGFPKNR+IGSGCNLD+ARFRY++G+RL
Sbjct: 169 AMVAEIIKHSPRCKIIVVSNPVDILTFVTWKLSGFPKNRIIGSGCNLDTARFRYMLGQRL 228
Query: 649 GVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLH 759
G+H SCHGW+LGEHGDSSVPVWS +N+AGV L+ L+
Sbjct: 229 GIHSESCHGWVLGEHGDSSVPVWSGVNIAGVPLRELN 265
Score = 69.3 bits (168), Expect(2) = 2e-93
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
W ++V+ SAY +IK+K YTSWA GLSV D+AESI +NL + HP++ I+ LYG K++
Sbjct: 277 WGDVHKEVIASAYNIIKMKGYTSWAIGLSVTDIAESILKNLRKTHPVTTKIQGLYGIKEE 336
Query: 971 V 973
V
Sbjct: 337 V 337
>ref|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [Mus musculus].
Length = 471
Score = 120 bits (300), Expect(2) = 3e-35
Identities = 68/182 (37%), Positives = 106/182 (58%)
Frame = +1
Query: 175 NKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSG 354
NKIT ++I K +AD++ L+D+ + +G M DL +L P +
Sbjct: 183 NKITVVGSGDLGIACTLAISAKGIADKLLLLDLSDGMSQGTM-DLDIFNL----PNVEIS 237
Query: 355 KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPV 534
KD + +A+S++V+ TA + ES L+ VQ NV++F+ ++P + YS + LLV S PV
Sbjct: 238 KDLSASAHSKVVIFTANSLGGS-ESYLHAVQSNVDMFRALVPALGHYSQHAVLLVASQPV 296
Query: 535 DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPV 714
+I++YV WK+S FP RV+G GCNLDS R +Y++ L V W++GE G++ V
Sbjct: 297 EIMSYVTWKLSTFPATRVVGIGCNLDSQRLQYIITSVLKVQTSGKEVWVVGEQGENKVCS 356
Query: 715 WS 720
WS
Sbjct: 357 WS 358
Score = 47.4 bits (111), Expect(2) = 3e-35
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +2
Query: 797 SGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKDV 973
S Q+ A E++K+K SW+ GLSVADL ++I N +VH +S + K YG +V
Sbjct: 367 SSQAQLSSRAMELLKVKGQRSWSVGLSVADLVDTIINNKRKVHSVSTLAKGYYGLDNEV 425
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,123,806
Number of extensions: 924672
Number of successful extensions: 2510
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2509
Number of HSP's successfully gapped: 16
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa]. 403 e-136
Alignment gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l... 330 e-107
Alignment gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa]. 328 e-106
Alignment gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa]. 317 e-105
Alignment gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 302 4e-99
Alignment gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B... 302 4e-99
Alignment gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 292 3e-96
Alignment gi|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-l... 182 3e-46
Alignment gi|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 128 5e-30
>ref|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa].
Length = 332
Score = 403 bits (1036), Expect(3) = e-136
Identities = 201/217 (92%), Positives = 203/217 (93%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
MATLKDQLIHNLLKEEHVPHNKIT ISILMKELADEIALVDVMEDKLKG
Sbjct: 1 MATLKDQLIHNLLKEEHVPHNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IPNIVKYSPNCKLLV SNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVASNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
HPLSCHGWILGEHGDSSVPVWS +NVAGVSLKNLHP+
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 217
Score = 95.5 bits (236), Expect(3) = e-136
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
HWK+ +QVVDSAYEVIKLK YTSWA GLSVADLAESI +NL RVHPIS MIK LYG K+
Sbjct: 226 HWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKE 285
Query: 968 DV 973
DV
Sbjct: 286 DV 287
Score = 25.4 bits (54), Expect(3) = e-136
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTDA+K+ KAVH +
Sbjct: 216 PELGTDADKEHWKAVHKQ 233
>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
Length = 428
Score = 330 bits (846), Expect(2) = e-107
Identities = 163/222 (73%), Positives = 190/222 (85%), Gaps = 1/222 (0%)
Frame = +1
Query: 103 SKSTMATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVME 279
++ TMATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+E
Sbjct: 90 NQRTMATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLE 149
Query: 280 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 459
DKLKGEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN
Sbjct: 150 DKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 209
Query: 460 IFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 639
+FKFIIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM
Sbjct: 210 VFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMA 269
Query: 640 ERLGVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
E+LGVHP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 270 EKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 311
Score = 77.4 bits (189), Expect(2) = e-107
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M++ +YG +
Sbjct: 320 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIEN 379
Query: 968 DV 973
+V
Sbjct: 380 EV 381
>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
Length = 334
Score = 328 bits (840), Expect(2) = e-106
Identities = 162/218 (74%), Positives = 187/218 (85%), Gaps = 1/218 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 291
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 292 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 471
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 472 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 651
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 652 VHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
VHP SCHGWILGEHGDSSV VWS +NVAGVSL+ L+P+
Sbjct: 181 VHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPE 218
Score = 77.4 bits (189), Expect(2) = e-106
Identities = 36/62 (58%), Positives = 49/62 (79%)
Frame = +2
Query: 788 HWKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKK 967
+WK + VV+SAYEVIKLK YT+WA GLSVADL ES+ +NL R+HP+S M++ +YG +
Sbjct: 227 NWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIEN 286
Query: 968 DV 973
+V
Sbjct: 287 EV 288
>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
Length = 332
Score = 317 bits (813), Expect(3) = e-105
Identities = 153/216 (70%), Positives = 182/216 (84%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGSLF T KIVSGKDY+V+ANS++V++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 475 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 654
IP IV++SP+CK+L+VSNPVDILTYVAWK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPTIVQHSPDCKMLIVSNPVDILTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGV 180
Query: 655 HPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHP 762
HP SCHGWI+GEHGDSSVP+WS +NVAGV+LK L P
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDP 216
Score = 79.7 bits (195), Expect(3) = e-105
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ +QV+ SAYE+IKLK YTSWA GLSV DL SI +NL RVHP+S M+K LYG K++
Sbjct: 227 WKNIHKQVIGSAYEIIKLKGYTSWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIKEE 286
Query: 971 V 973
+
Sbjct: 287 I 287
Score = 23.5 bits (49), Expect(3) = e-105
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 759 P*LGTDANKDTGKAVHNR 812
P LGTD++KD K +H +
Sbjct: 216 PKLGTDSDKDQWKNIHKQ 233
>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 302 bits (773), Expect(2) = 4e-99
Identities = 154/258 (59%), Positives = 190/258 (73%), Gaps = 6/258 (2%)
Frame = +1
Query: 10 RSEYRSSCRQVRIRHCAPPTPARSALPIPFGSK------STMATLKDQLIHNLLKEEHVP 171
R+ R ++V + A AR +P G S M+T++ +L+ N EE V
Sbjct: 9 RTSQRVGAKRVNLPCPAVAPSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVH 68
Query: 172 HNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 351
NKI+ ISIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS
Sbjct: 69 SNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVS 128
Query: 352 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 531
KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNP
Sbjct: 129 SKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNP 188
Query: 532 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 711
VDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVP
Sbjct: 189 VDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVP 248
Query: 712 VWSEINVAGVSLKNLHPD 765
VWS +N+AGV LKNL+ D
Sbjct: 249 VWSGVNIAGVPLKNLNLD 266
Score = 78.2 bits (191), Expect(2) = 4e-99
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ + VV SAYE+IK+K YTSWA GLSVADL ESI +NL RVHP+S IK LYG ++
Sbjct: 276 WKNVHKDVVASAYEIIKMKGYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEE 335
Query: 971 V 973
V
Sbjct: 336 V 336
>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 302 bits (773), Expect(2) = 4e-99
Identities = 154/258 (59%), Positives = 190/258 (73%), Gaps = 6/258 (2%)
Frame = +1
Query: 10 RSEYRSSCRQVRIRHCAPPTPARSALPIPFGSK------STMATLKDQLIHNLLKEEHVP 171
R+ R ++V + A AR +P G S M+T++ +L+ N EE V
Sbjct: 9 RTSQRVGAKRVNLPCPAVAPSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVH 68
Query: 172 HNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 351
NKI+ ISIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS
Sbjct: 69 SNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVS 128
Query: 352 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 531
KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNP
Sbjct: 129 SKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNP 188
Query: 532 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 711
VDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVP
Sbjct: 189 VDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVP 248
Query: 712 VWSEINVAGVSLKNLHPD 765
VWS +N+AGV LKNL+ D
Sbjct: 249 VWSGVNIAGVPLKNLNLD 266
Score = 78.2 bits (191), Expect(2) = 4e-99
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ + VV SAYE+IK+K YTSWA GLSVADL ESI +NL RVHP+S IK LYG ++
Sbjct: 276 WKNVHKDVVASAYEIIKMKGYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEE 335
Query: 971 V 973
V
Sbjct: 336 V 336
>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
scrofa].
Length = 328
Score = 292 bits (748), Expect(2) = 3e-96
Identities = 145/219 (66%), Positives = 176/219 (80%), Gaps = 2/219 (0%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T++ +L+ N EE V NKI+ ISIL+K L DE+ALVDV E +LKG
Sbjct: 1 MSTVRCELMKNFTSEEVVHSNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKG 60
Query: 295 EM--MDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 468
E MDLQHGS F++ P IVS KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK
Sbjct: 61 ETXTMDLQHGSPFVKMPNIVSSKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFK 120
Query: 469 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 648
+I +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RL
Sbjct: 121 LMISSIVQYSPRCKLIVVSNPVDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180
Query: 649 GVHPLSCHGWILGEHGDSSVPVWSEINVAGVSLKNLHPD 765
G+H SCHGWILGEHGDSSVPVWS +N+AGV LKNL+ D
Sbjct: 181 GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLD 219
Score = 78.2 bits (191), Expect(2) = 3e-96
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +2
Query: 791 WKSGSQQVVDSAYEVIKLKSYTSWAHGLSVADLAESINENL*RVHPISHMIKVLYGKKKD 970
WK+ + VV SAYE+IK+K YTSWA GLSVADL ESI +NL RVHP+S IK LYG ++
Sbjct: 229 WKNVHKDVVASAYEIIKMKGYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEE 288
Query: 971 V 973
V
Sbjct: 289 V 289
>ref|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-like [Sus scrofa].
Length = 262
Score = 182 bits (461), Expect = 3e-46
Identities = 92/139 (66%), Positives = 112/139 (80%)
Frame = +1
Query: 115 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 294
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 295 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 474
E MDLQHGSLF T KIVSGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 475 IPNIVKYSPNCKLLVVSNP 531
IP IV++SP+CK+L+VSNP
Sbjct: 121 IPTIVQHSPDCKMLIVSNP 139
>ref|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 375
Score = 128 bits (321), Expect = 5e-30
Identities = 71/191 (37%), Positives = 109/191 (57%)
Frame = +1
Query: 145 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 324
N +E+ +KIT ++I K +AD + L+D+ E KG MMDL +L
Sbjct: 173 NWANQENKTVSKITVVGGGELGIACTLAIAAKGIADRLVLLDLSEGT-KGGMMDLNIFNL 231
Query: 325 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 504
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 505 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 684
LLV S PV+I+TYV WK+S FP N+VIG GCNLDS R +Y++ L W++
Sbjct: 287 GVLLVASQPVEIMTYVTWKLSAFPANQVIGIGCNLDSQRLQYIITNILKAQTSGKEVWVI 346
Query: 685 GEHGDSSVPVW 717
GE G+ VP W
Sbjct: 347 GEQGEDKVPTW 357
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,112,753
Number of extensions: 686750
Number of successful extensions: 2046
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2039
Number of HSP's successfully gapped: 18
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-006993
(974 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 341 4e-91
gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533 168 4e-39
Sscrofa_Chr01 168 4e-39
Sscrofa_Chr04 58 9e-06
>Sscrofa_Chr02
|| Length = 162569375
Score = 341 bits (172), Expect = 4e-91
Identities = 175/176 (99%)
Strand = Plus / Plus
Query: 357 agactataacgtgactgcaaactctaggctggttgttatcacagctggtgcacgtcagca 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 43904376 agactataacgtgactgcaaactctaggctggttgttatcacagctggggcacgtcagca 43904435
Query: 417 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904436 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 43904495
Query: 477 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904496 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 43904551
Score = 341 bits (172), Expect = 4e-91
Identities = 175/176 (99%)
Strand = Plus / Plus
Query: 531 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905330 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 43905389
Query: 591 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905390 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 43905449
Query: 651 agttcacccccttagctgtcatgggtggatccttggggagcatggagactctagtg 706
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905450 agttcaccccctaagctgtcatgggtggatccttggggagcatggagactctagtg 43905505
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 90 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900596 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 43900655
Query: 150 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900656 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 43900715
Query: 210 catggcttgtgccatcagtatcttaatgaagg 241
||||||||||||||||||||||||||||||||
Sbjct: 43900716 catggcttgtgccatcagtatcttaatgaagg 43900747
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 239 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903297 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 43903356
Query: 299 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903357 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 43903416
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 cccgcttcgcgctcggagtaccggagcagctgccgccaagtccggatccgacactgtgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43898270 cccgcttcgcgctcggagtaccggagcagctgccgccaagtccggatccgacactgtgcg 43898329
Query: 61 cctcccacgcccgcccgaagtgcactcccg 90
||||||||||||||||||||||||||||||
Sbjct: 43898330 cctcccacgcccgcccgaagtgcactcccg 43898359
Score = 178 bits (90), Expect = 4e-42
Identities = 120/130 (92%)
Strand = Plus / Plus
Query: 819 acagtgcttatgaggtgatcaaactgaaaagctacacgtcctgggcccatggactatctg 878
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 43907758 acagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattggactatctg 43907817
Query: 879 tggcagatctggcagaaagtataaatgagaatctttagcgggtgcatccgatttcccaca 938
|||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct: 43907818 tggcagatctggcagaaagtataatgaagaatcttaggcgggtgcatccgatttccacca 43907877
Query: 939 tgattaaggt 948
||||||||||
Sbjct: 43907878 tgattaaggt 43907887
Score = 143 bits (72), Expect = 2e-31
Identities = 112/120 (93%), Gaps = 4/120 (3%)
Strand = Plus / Plus
Query: 706 gtgcctgtgtggagcgaaataaatgttgctggtgtctccctgaagaatctgcaccctg-a 764
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 43906179 gtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaagaatctgcaccctgaa 43906238
Query: 765 ttaggcactgatgcaaataagg-acactggaaaagcggttcac-aacaggtggtggacag 822
||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||
Sbjct: 43906239 ttaggcactgatgcagataaggaacactgg-aaagcagttcacaaacaggtggtggacag 43906297
Score = 73.8 bits (37), Expect = 2e-10
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 531 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 590
||||||||| |||||||| || ||||||||| |||||||||| || || ||||| ||
Sbjct: 43709921 agtggatattttgacctacgttgcttggaagttaagtggcttacctgcaactcgtgtaat 43709980
Query: 591 tggaagtggttgcaatttggattcagcccggttccgttacctaat 635
|||||||||||| ||| | || || ||||| ||||||||||||||
Sbjct: 43709981 tggaagtggttgtaatctagactctgcccgtttccgttacctaat 43710025
Score = 61.9 bits (31), Expect = 6e-07
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 395 tcacagctggtgcacgtcagcaagagggagaaagccgtcttaatttggtccagcgtaatg 454
||||||| |||||||| ||||| ||||||||||| || ||| |||||||||||||||
Sbjct: 43691980 tcacagcaggtgcacggcagcaggagggagaaagtcgccttgccctggtccagcgtaatg 43692039
Query: 455 tgaacatctttaaattcatcattccta 481
|||| ||| | |||| ||||||||||
Sbjct: 43692040 tgaatatcatgaaatcaatcattccta 43692066
>gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533
Length = 59217
Score = 168 bits (85), Expect = 4e-39
Identities = 295/365 (80%)
Strand = Plus / Minus
Query: 392 ttatcacagctggtgcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 451
|||||||||| |||||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 1417 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 1358
Query: 452 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 511
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 1357 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 1298
Query: 512 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 571
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 1297 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 1238
Query: 572 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 631
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 1237 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 1178
Query: 632 taatgggggaaaggctgggagttcacccccttagctgtcatgggtggatccttggggagc 691
| || ||| | ||||| || | ||| | ||||||||||||||||||||||| ||||
Sbjct: 1177 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 1118
Query: 692 atggagactctagtgtgcctgtgtggagcgaaataaatgttgctggtgtctccctgaaga 751
|||||||||| ||||| ||||||||||| | | | || | ||||||||| | |||||||
Sbjct: 1117 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 1058
Query: 752 atctg 756
|||||
Sbjct: 1057 atctg 1053
>Sscrofa_Chr01
|| Length = 315321322
Score = 168 bits (85), Expect = 4e-39
Identities = 295/365 (80%)
Strand = Plus / Plus
Query: 392 ttatcacagctggtgcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 451
|||||||||| |||||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 11733277 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 11733336
Query: 452 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 511
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 11733337 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 11733396
Query: 512 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 571
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 11733397 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 11733456
Query: 572 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 631
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 11733457 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 11733516
Query: 632 taatgggggaaaggctgggagttcacccccttagctgtcatgggtggatccttggggagc 691
| || ||| | ||||| || | ||| | ||||||||||||||||||||||| ||||
Sbjct: 11733517 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 11733576
Query: 692 atggagactctagtgtgcctgtgtggagcgaaataaatgttgctggtgtctccctgaaga 751
|||||||||| ||||| ||||||||||| | | | || | ||||||||| | |||||||
Sbjct: 11733577 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 11733636
Query: 752 atctg 756
|||||
Sbjct: 11733637 atctg 11733641
>Sscrofa_Chr04
|| Length = 143465943
Score = 58.0 bits (29), Expect = 9e-06
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 521 tttccaatccagtggatatcttgacctatgtggcttggaagataagtggctttcccaaaa 580
|||||||||||||||||||||| || ||||| |||| ||| | |||| ||||||||||
Sbjct: 55275516 tttccaatccagtggatatcttaacttatgtaccttgaaagttgagtgcatttcccaaaa 55275575
Query: 581 accgtgttattggaagt 597
| | | |||||||||||
Sbjct: 55275576 atcatattattggaagt 55275592
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,667,268
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 14
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)