Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus]. 417 e-124
Alignment gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus]. 342 e-100
Alignment gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau... 337 5e-98
Alignment gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau... 337 8e-93
Alignment gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru... 310 9e-90
Alignment gi|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos... 241 3e-71
Alignment gi|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1... 241 3e-71
Alignment gi|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [B... 135 9e-34
Alignment gi|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos... 87 2e-17
Alignment gi|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taur... 87 2e-17
>ref|NP_776524.1| L-lactate dehydrogenase A chain [Bos taurus].
Length = 332
Score = 417 bits (1071), Expect(2) = e-124
Identities = 208/228 (91%), Positives = 212/228 (92%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADK+ K
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWK 228
Score = 46.2 bits (108), Expect(2) = e-124
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVDSAYEVIKLKGYTSWAIGLSVA 257
>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
Length = 334
Score = 342 bits (878), Expect(2) = e-100
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPACIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 43.5 bits (101), Expect(2) = e-100
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTNWAIGLSVA 258
>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
Length = 332
Score = 337 bits (864), Expect(2) = 5e-98
Identities = 162/228 (71%), Positives = 195/228 (85%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK+L P+LG+D+DKD+ K
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWK 228
Score = 40.0 bits (92), Expect(2) = 5e-98
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
VV SAYE+IKLKGYTSW I LS+
Sbjct: 234 VVGSAYEIIKLKGYTSWGIGLSV 256
>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
Length = 241
Score = 337 bits (864), Expect = 8e-93
Identities = 162/228 (71%), Positives = 195/228 (85%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+++K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV+ DKLKG
Sbjct: 1 MSSVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVVTDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF TPKIVSGKDY V+ANS+LV+ITAGARQQEGESRLNLVQRNV+I K +
Sbjct: 61 ETMDLQHGSLFFNTPKIVSGKDYTVSANSKLVIITAGARQQEGESRLNLVQRNVDIMKSV 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV+ SP+CK+L+VSNPVDILTYV WK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPAIVQNSPDCKMLIVSNPVDILTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK+L P+LG+D+DKD+ K
Sbjct: 181 HPSSCHGWIIGEHGDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWK 228
>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
Length = 381
Score = 310 bits (793), Expect(2) = 9e-90
Identities = 157/249 (63%), Positives = 193/249 (77%), Gaps = 1/249 (0%)
Frame = +3
Query: 72 CAPP-TPARSALPIPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISI 248
C P TP A + SK MAT+K +L+ N EE V ++KI+ +SI
Sbjct: 31 CPPAATPLGGAWAVAPASK--MATVKCELMKNFTSEEPVRNSKISIVGTGSVGMACAVSI 88
Query: 249 LMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGAR 428
L+K L+DE+ALVDV E +LKGE MDLQHGSLF++ P IVS +DY VTANS LV+ITAGAR
Sbjct: 89 LLKGLSDELALVDVDEGRLKGETMDLQHGSLFVKMPNIVSSRDYVVTANSNLVIITAGAR 148
Query: 429 QQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVI 608
Q++GE+RLNLVQRNV IFK ++ +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NRVI
Sbjct: 149 QEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVVSNPVDILTYVAWKLSAFPQNRVI 208
Query: 609 GSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELG 788
GSGCNLD+ARFR+L+G+RL +H SCHGWILGEHGDSSVPVWSGVN+AGV LK L+ ++G
Sbjct: 209 GSGCNLDTARFRFLIGQRLSIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKELNLDIG 268
Query: 789 TDADKDTGK 815
TD D + K
Sbjct: 269 TDKDPEQWK 277
Score = 39.7 bits (91), Expect(2) = 9e-90
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYE+IK+KGYT WAI LS+A
Sbjct: 283 VVASAYEIIKMKGYTYWAIGLSVA 306
>ref|XP_002699978.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 274
Score = 241 bits (616), Expect(2) = 3e-71
Identities = 137/228 (60%), Positives = 144/228 (63%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADK+ K
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWK 170
Score = 46.2 bits (108), Expect(2) = 3e-71
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 176 VVDSAYEVIKLKGYTSWAIGLSVA 199
>ref|XP_001251829.2| PREDICTED: lactate dehydrogenase A isoform 1 [Bos taurus].
Length = 274
Score = 241 bits (616), Expect(2) = 3e-71
Identities = 137/228 (60%), Positives = 144/228 (63%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEEHVP NKIT ISILMK+LADE+ALVDVMED LKG
Sbjct: 1 MATLKDQLIQNLLKEEHVPQNKITIVGVGAVGMACAISILMKDLADEVALVDVMEDILKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGK V+I ++
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK--------------------------------VDILTYV 88
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
I + N RVIGSGCNLDSARFRYLMGERLGV
Sbjct: 89 AWKISGFPKN--------------------------RVIGSGCNLDSARFRYLMGERLGV 122
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADK+ K
Sbjct: 123 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEQWK 170
Score = 46.2 bits (108), Expect(2) = 3e-71
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 176 VVDSAYEVIKLKGYTSWAIGLSVA 199
>ref|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [Bos taurus].
Length = 471
Score = 135 bits (341), Expect(2) = 9e-34
Identities = 75/193 (38%), Positives = 111/193 (57%)
Frame = +3
Query: 162 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 341
N E+ NKIT ++I K +AD++ L+D E KG MMDL +L
Sbjct: 173 NWANRENKTVNKITVVGGGELGIACTLAISAKGIADKLVLLDFSEGT-KGGMMDLDIFNL 231
Query: 342 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 521
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 522 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 701
LLV S PV+I+TYV WK+S FP NRVIG GCNLDS R +Y++ L W++
Sbjct: 287 AILLVASQPVEIMTYVTWKLSAFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI 346
Query: 702 GEHGDSSVPVWSG 740
GE G+ VP+WSG
Sbjct: 347 GEQGEDKVPIWSG 359
Score = 26.6 bits (57), Expect(2) = 9e-34
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 805 TLESSSQTVVDSAYEVIKLKGYTSWAIELSLA 900
T S + + A E++++KG SW++ LS+A
Sbjct: 364 TNHDSQMQLSNRAMELLRVKGQRSWSVGLSVA 395
>ref|XP_002694110.1| PREDICTED: lactate dehydrogenase A-like [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 2e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGK 374
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 6e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 534 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
>ref|XP_002701606.1| PREDICTED: lactate dehydrogenase A [Bos taurus].
Length = 120
Score = 87.0 bits (214), Expect = 2e-17
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATL ++LI + +EE VP+NKIT ISIL K L DE ALVDV+EDKLK
Sbjct: 1 MATLTEKLIAPVAEEEGTVPNNKITVEGTGQVSMVFTISILGKSLTDEFALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGK 374
GEMMDLQH SLFL+TPKIV+ K
Sbjct: 61 GEMMDLQHKSLFLQTPKIVADK 82
Score = 58.9 bits (141), Expect = 6e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +3
Query: 534 VVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
+V++ DILTY+ WK SG PK+ VI SGCNLDSA FR LM E
Sbjct: 78 IVADKADILTYITWKPSGLPKHCVIASGCNLDSAIFRCLMAE 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,892,381
Number of extensions: 1008607
Number of successful extensions: 2952
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2949
Number of HSP's successfully gapped: 21
Length of query: 301
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,306,398
Effective search space: 2846973202
Effective search space used: 2846973202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A... 426 e-126
Alignment gi|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A... 413 e-122
Alignment gi|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A... 375 e-111
Alignment gi|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A... 368 e-109
Alignment gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B... 345 e-101
Alignment gi|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B... 337 2e-99
Alignment gi|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B... 338 4e-99
Alignment gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [... 332 2e-97
Alignment gi|XP_535075.1| PREDICTED: similar to L-lactate dehydrogenase B... 334 3e-97
Alignment gi|XP_533418.1| PREDICTED: similar to L-lactate dehydrogenase B... 316 3e-93
>ref|XP_534084.2| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 1 [Canis familiaris].
Length = 361
Score = 426 bits (1096), Expect(2) = e-126
Identities = 211/237 (89%), Positives = 219/237 (92%)
Frame = +3
Query: 108 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 287
IPFGSKS MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSKMATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 288 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 467
VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 468 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 647
NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 648 LMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
LMGERLGVHPLSCHGW+LGEHGDSSVPVWSGVNVAGVSLKNLHP+LGTDADK+ KQ
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKEQWKQ 258
Score = 46.2 bits (108), Expect(2) = e-126
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 263 VVDSAYEVIKLKGYTSWAIGLSVA 286
>ref|XP_865353.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) isoform 2 [Canis familiaris].
Length = 332
Score = 413 bits (1061), Expect(2) = e-122
Identities = 204/229 (89%), Positives = 212/229 (92%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKE+H P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HPLSCHGW+LGEHGDSSVPVWSGVNVAGVSLKNLHP+LGTDADK+ KQ
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKEQWKQ 229
Score = 46.2 bits (108), Expect(2) = e-122
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVDSAYEVIKLKGYTSWAIGLSVA 257
>ref|XP_547812.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 330
Score = 375 bits (962), Expect(2) = e-111
Identities = 184/229 (80%), Positives = 201/229 (87%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKE+++ NKIT ISILMK+LADE+ALVDVMEDKLK
Sbjct: 1 MATLKDQLIQNLLKEDNISQNKITVIGVGAIGMTCAISILMKDLADELALVDVMEDKLKE 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQH SLF RTPKIVSGKDYNVTANS+L +ITAGA QQEGESRLNL+QRN+NIFKFI
Sbjct: 61 ETMDLQHSSLFFRTPKIVSGKDYNVTANSKLAIITAGACQQEGESRLNLIQRNLNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVSNPV+I TYVAWKI+GFPKN +IGS CNLDSARFRYL+GERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSNPVNIFTYVAWKITGFPKNCIIGSDCNLDSARFRYLIGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HPLSCH W+LGEHGDSSVPVWSG NVAGVSLKNLHP+LGTDADK+ K+
Sbjct: 181 HPLSCHRWVLGEHGDSSVPVWSGANVAGVSLKNLHPDLGTDADKEQWKE 229
Score = 46.2 bits (108), Expect(2) = e-111
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVDSAYEVIKLKGYTSWAIGLSVA 257
>ref|XP_542567.1| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH
muscle subunit) (LDH-M) (Proliferation-inducing gene 19
protein) [Canis familiaris].
Length = 332
Score = 368 bits (945), Expect(2) = e-109
Identities = 185/229 (80%), Positives = 197/229 (86%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MA LKDQL NLLKE+H+P NKIT ISILMK+LA E+ALVDVMEDKLKG
Sbjct: 1 MAILKDQLTQNLLKEDHIPQNKITVVEVGAVGLACAISILMKDLAGELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRT KIVS KDYNVTANS+LV+ITAG RQQEGES LNL Q NVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTLKIVSCKDYNVTANSKLVIITAGPRQQEGESCLNLAQHNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLVVS+PVDILTYVAWKISGFPK V GSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVVSSPVDILTYVAWKISGFPKTHVFGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HPLSCHGW+LGEHGD+SVPV SG NVAGVSLKN HP+L TDADK+ K+
Sbjct: 181 HPLSCHGWVLGEHGDASVPVRSGGNVAGVSLKNPHPDLATDADKEQWKE 229
Score = 45.1 bits (105), Expect(2) = e-109
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLAH 903
VVDSAYEVIKLKGYTSW I LS+A+
Sbjct: 234 VVDSAYEVIKLKGYTSWPIGLSVAY 258
>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) [Canis familiaris].
Length = 334
Score = 345 bits (885), Expect(2) = e-101
Identities = 170/230 (73%), Positives = 197/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 43.5 bits (101), Expect(2) = e-101
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTNWAIGLSVA 258
>ref|XP_532332.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 337 bits (864), Expect(2) = 2e-99
Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGVACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQ GSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQDGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMVEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPRSCHGWILGEHGDSSVVVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 44.7 bits (104), Expect(2) = 2e-99
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYTSWAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTSWAIGLSVA 258
>ref|XP_538125.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 334
Score = 338 bits (867), Expect(2) = 4e-99
Identities = 167/230 (72%), Positives = 194/230 (84%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKI + KDY+VTANS++VV+TAG RQQEGES LNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIAADKDYSVTANSKIVVVTAGVRQQEGESCLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKRRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD + + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNNSENWKE 230
Score = 42.4 bits (98), Expect(2) = 4e-99
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVKSAYEVIKLKGYTNWAIGLSVA 258
>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
Length = 420
Score = 332 bits (852), Expect(2) = 2e-97
Identities = 161/228 (70%), Positives = 189/228 (82%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K++LI NL++E+ + KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 89 MSTVKEKLIENLIEEDKISQRKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 148
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KI SGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 149 ETMDLQHGSLFFNTSKITSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 208
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV++SP+CK+L+VSNPVDILTYV WK+SG P RV GSGCNLDSARFRYL+GE+LGV
Sbjct: 209 IPAIVQHSPDCKMLIVSNPVDILTYVVWKLSGLPATRVFGSGCNLDSARFRYLIGEKLGV 268
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTDADKD K
Sbjct: 269 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDADKDQWK 316
Score = 42.7 bits (99), Expect(2) = 2e-97
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
VV+SAYE+IKLKGYTSWAI LS+
Sbjct: 322 VVESAYEIIKLKGYTSWAIGLSV 344
>ref|XP_535075.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 329
Score = 334 bits (856), Expect(2) = 3e-97
Identities = 162/229 (70%), Positives = 191/229 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLK++LI + +E +P+NKIT ISIL K LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKEKLIAPVAEEAAIPNNKITIVGVGQVGMACAISILGKSLADELALVDVLEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHG LFL+TPKIV+ DY+VTANS+++V+TAG RQQEG+S LNLVQRNVN+FKFI
Sbjct: 61 EMMDLQHGCLFLQTPKIVADNDYSVTANSKIMVVTAGVRQQEGKSHLNLVQRNVNVFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARF YLM E+L +
Sbjct: 121 IPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFHYLMAEKLRI 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 HPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 229
Score = 40.4 bits (93), Expect(2) = 3e-97
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLK YT+WAI LS+A
Sbjct: 230 VVESAYEVIKLKEYTNWAIGLSVA 253
>ref|XP_533418.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 1 [Canis familiaris].
Length = 328
Score = 316 bits (810), Expect(2) = 3e-93
Identities = 158/230 (68%), Positives = 188/230 (81%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISI+ K LADE+ALVDV+EDK+K
Sbjct: 1 MATLKEKLIAPVAEEEATIPNNKITVVGVGQVGMACAISIVGKSLADELALVDVLEDKIK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN---- 116
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
P IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARF Y M E+LG
Sbjct: 117 --PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFHYFMAEKLG 174
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWIL EHGDSSV +WSGVNVAGVSL+ L+PE+GTD + + K+
Sbjct: 175 IHPSSCHGWILEEHGDSSVALWSGVNVAGVSLQELNPEMGTDNNSENWKE 224
Score = 44.7 bits (104), Expect(2) = 3e-93
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYTSWAI LS+A
Sbjct: 229 VVESAYEVIKLKGYTSWAIGLSVA 252
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,484,889
Number of extensions: 1038361
Number of successful extensions: 3209
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3198
Number of HSP's successfully gapped: 70
Length of query: 301
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 199
Effective length of database: 15,474,232
Effective search space: 3079372168
Effective search space used: 3079372168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [H... 417 e-123
Alignment gi|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo... 403 e-119
Alignment gi|NP_001158887.1| L-lactate dehydrogenase A chain isoform 4 [H... 406 e-113
Alignment gi|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [H... 403 e-112
Alignment gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien... 345 e-101
Alignment gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens]. 345 e-101
Alignment gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens]. 327 2e-95
Alignment gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens]. 327 2e-95
Alignment gi|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapi... 322 1e-93
Alignment gi|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens]. 322 1e-93
>ref|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [Homo sapiens].
Length = 361
Score = 417 bits (1071), Expect(2) = e-123
Identities = 204/237 (86%), Positives = 217/237 (91%)
Frame = +3
Query: 108 IPFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVD 287
IPFGSKS MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVD
Sbjct: 22 IPFGSKSNMATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVD 81
Query: 288 VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQR 467
V+EDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQR
Sbjct: 82 VIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQR 141
Query: 468 NVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 647
NVNIFKFIIPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY
Sbjct: 142 NVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY 201
Query: 648 LMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
LMGERLGVHPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DK+ K+
Sbjct: 202 LMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKE 258
Score = 44.7 bits (104), Expect(2) = e-123
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYTSWAI LS+A
Sbjct: 263 VVESAYEVIKLKGYTSWAIGLSVA 286
>ref|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo sapiens].
Length = 332
Score = 403 bits (1035), Expect(2) = e-119
Identities = 197/229 (86%), Positives = 210/229 (91%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DK+ K+
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKE 229
Score = 44.7 bits (104), Expect(2) = e-119
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVESAYEVIKLKGYTSWAIGLSVA 257
>ref|NP_001158887.1| L-lactate dehydrogenase A chain isoform 4 [Homo sapiens].
Length = 274
Score = 406 bits (1043), Expect = e-113
Identities = 206/261 (78%), Positives = 221/261 (84%), Gaps = 5/261 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ--FTNG---GG 836
HPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DK+ K+ +T G G
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKECRYTLGDPKGA 240
Query: 837 QCL*GDQTERLHVLGH*TIFG 899
L H LG+ I G
Sbjct: 241 AILKSSDVISFHCLGYNRILG 261
>ref|NP_001158888.1| L-lactate dehydrogenase A chain isoform 5 [Homo sapiens].
Length = 241
Score = 403 bits (1035), Expect = e-112
Identities = 197/229 (86%), Positives = 210/229 (91%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI+NLLKEE P NKIT ISILMK+LADE+ALVDV+EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPN+VKYSPNCKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
HPLSCHGW+LGEHGDSSVPVWSG+NVAGVSLK LHP+LGTD DK+ K+
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKE 229
>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 345 bits (886), Expect(2) = e-101
Identities = 171/230 (74%), Positives = 197/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 43.5 bits (101), Expect(2) = e-101
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTNWAIGLSVA 258
>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 345 bits (886), Expect(2) = e-101
Identities = 171/230 (74%), Positives = 197/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 43.5 bits (101), Expect(2) = e-101
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTNWAIGLSVA 258
>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 327 bits (838), Expect(2) = 2e-95
Identities = 161/228 (70%), Positives = 188/228 (82%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DK+ K
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWK 228
Score = 41.6 bits (96), Expect(2) = 2e-95
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
V+ SAYE+IKLKGYTSWAI LS+
Sbjct: 234 VIQSAYEIIKLKGYTSWAIGLSV 256
>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 327 bits (838), Expect(2) = 2e-95
Identities = 161/228 (70%), Positives = 188/228 (82%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI L++++ KIT ISIL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLF T KI SGKDY+V+ANSR+V++TAGARQQEGE+RL LVQRNV I K I
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV YSP+CK+LVVSNPVDILTY+ WKISG P RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DK+ K
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWK 228
Score = 41.6 bits (96), Expect(2) = 2e-95
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
V+ SAYE+IKLKGYTSWAI LS+
Sbjct: 234 VIQSAYEIIKLKGYTSWAIGLSV 256
>ref|NP_001137543.1| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 322 bits (826), Expect(2) = 1e-93
Identities = 156/225 (69%), Positives = 187/225 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKD 806
H SCHG ILGEHGDSSVPVWSGVN+AGV LK+L+P++GTD D +
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPE 225
Score = 40.0 bits (92), Expect(2) = 1e-93
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 811 ESSSQTVVDSAYEVIKLKGYTSWAIELSLA 900
E+ + V+ S YE++K+KGYTSW I LS+A
Sbjct: 228 ENVHKKVISSGYEMVKMKGYTSWGISLSVA 257
>ref|NP_659409.2| L-lactate dehydrogenase A-like 6A [Homo sapiens].
Length = 332
Score = 322 bits (826), Expect(2) = 1e-93
Identities = 156/225 (69%), Positives = 187/225 (83%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MAT+K +LI N +EE + HNKI+ ISIL+K L+DE+ LVDV E KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGS F++ P IVS KDY VTANS LV+ITAGARQ++GE+RL+LVQRNV+IFK +
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNI +YSP+CKLL+V+NPVDILTYVAWK+SGFPKNRVIGSGCNLDSARFRY +G+RLG+
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKD 806
H SCHG ILGEHGDSSVPVWSGVN+AGV LK+L+P++GTD D +
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPE 225
Score = 40.0 bits (92), Expect(2) = 1e-93
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 811 ESSSQTVVDSAYEVIKLKGYTSWAIELSLA 900
E+ + V+ S YE++K+KGYTSW I LS+A
Sbjct: 228 ENVHKKVISSGYEMVKMKGYTSWGISLSVA 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,848,342
Number of extensions: 1033771
Number of successful extensions: 2973
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2967
Number of HSP's successfully gapped: 26
Length of query: 301
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,934,836
Effective search space: 2972032364
Effective search space used: 2972032364
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [M... 397 e-118
Alignment gi|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus ... 393 e-116
Alignment gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus]. 345 e-102
Alignment gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like... 340 2e-99
Alignment gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus]. 315 1e-90
Alignment gi|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus]. 302 5e-87
Alignment gi|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [M... 122 2e-30
>ref|NP_001129541.2| L-lactate dehydrogenase A chain isoform 2 [Mus musculus].
Length = 361
Score = 397 bits (1021), Expect(2) = e-118
Identities = 199/233 (85%), Positives = 211/233 (90%)
Frame = +3
Query: 120 SKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMED 299
SKS MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMED
Sbjct: 26 SKSKMATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMED 85
Query: 300 KLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNI 479
KLKGEMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNI
Sbjct: 86 KLKGEMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNI 145
Query: 480 FKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 659
FKFIIPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE
Sbjct: 146 FKFIIPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE 205
Query: 660 RLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
RLGVH LSCHGW+LGEHGDSSVPVWSGVNVAGVSLK+L+PELGTDADK+ K+
Sbjct: 206 RLGVHALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKE 258
Score = 46.2 bits (108), Expect(2) = e-118
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 263 VVDSAYEVIKLKGYTSWAIGLSVA 286
>ref|NP_034829.1| L-lactate dehydrogenase A chain isoform 1 [Mus musculus].
Length = 332
Score = 393 bits (1009), Expect(2) = e-116
Identities = 196/229 (85%), Positives = 208/229 (90%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLI NLLKEE P NKIT ISILMK+LADE+ALVDVMEDKLKG
Sbjct: 1 MATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFL+TPKIVS KDY VTANS+LV+ITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSP+CKLL+VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
H LSCHGW+LGEHGDSSVPVWSGVNVAGVSLK+L+PELGTDADK+ K+
Sbjct: 181 HALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKE 229
Score = 46.2 bits (108), Expect(2) = e-116
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVDSAYEVIKLKGYTSWAIGLSVA 257
>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
Length = 334
Score = 345 bits (886), Expect(2) = e-102
Identities = 170/230 (73%), Positives = 197/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI ++ +E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVADDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 45.1 bits (105), Expect(2) = e-102
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVDSAYEVIKLKGYTNWAIGLSVA 258
>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
musculus].
Length = 334
Score = 340 bits (871), Expect(2) = 2e-99
Identities = 167/230 (72%), Positives = 196/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI ++ ++E VP+NKIT ISIL K LADE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIASVAEDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
EMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV++AG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 EEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+ G PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCTIIVVSNPVDILTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
+HP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 41.6 bits (96), Expect(2) = 2e-99
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVVSAYEVIKLKGYTNWAIGLSVA 258
>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
Length = 332
Score = 315 bits (808), Expect(2) = 1e-90
Identities = 156/242 (64%), Positives = 192/242 (79%), Gaps = 4/242 (1%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL+ E+ + KIT ISIL+K LADE+ALVD +KL+G
Sbjct: 1 MSTVKEQLIQNLVPEDKLSRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E +DL HGSLFL TPKIV GKDYNV+ANS+LV+ITAGAR GE+RL+L+QRNV I K I
Sbjct: 61 EALDLLHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
+P IV+ SP+CK+++V+NPVDILTYV WKISGFP RVIGSGCNLDSARFRYL+GE+LGV
Sbjct: 121 VPGIVQNSPDCKIIIVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKD----TGKQFTNGGGQ 839
+P SCHGW+LGEHGDSSVP+WSGVNVAGV+LK+L+P +GTD+DK+ KQ GG +
Sbjct: 181 NPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDSDKEHWKNVHKQVVEGGYE 240
Query: 840 CL 845
L
Sbjct: 241 VL 242
Score = 36.6 bits (83), Expect(2) = 1e-90
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
VV+ YEV+ +KGYTSWAI LS+
Sbjct: 234 VVEGGYEVLNMKGYTSWAIGLSV 256
>ref|NP_780558.1| L-lactate dehydrogenase A-like 6B [Mus musculus].
Length = 382
Score = 302 bits (773), Expect(2) = 5e-87
Identities = 140/227 (61%), Positives = 180/227 (79%)
Frame = +3
Query: 126 STMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKL 305
S+MAT+K +LI ++ EE V HNK++ I I+ K L DE+ALVD E+K+
Sbjct: 49 SSMATVKGELIQHISSEEPVLHNKVSIVGTGSVGMACAIGIIAKGLTDELALVDNNEEKM 108
Query: 306 KGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 485
KGE MDLQHGS+F++ P IV KD+ VTANS +V+ITAGARQ++ E+RLNLVQRNV IFK
Sbjct: 109 KGETMDLQHGSVFMKMPNIVCSKDFRVTANSEVVIITAGARQEKNETRLNLVQRNVTIFK 168
Query: 486 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 665
++ I+K+SP CK++VVSNPVDILT+V WK+SGFPKNR+IGSGCNLD+ARFRY++G+RL
Sbjct: 169 AMVAEIIKHSPRCKIIVVSNPVDILTFVTWKLSGFPKNRIIGSGCNLDTARFRYMLGQRL 228
Query: 666 GVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKD 806
G+H SCHGW+LGEHGDSSVPVWSGVN+AGV L+ L+ +GT D +
Sbjct: 229 GIHSESCHGWVLGEHGDSSVPVWSGVNIAGVPLRELNSAIGTSKDPE 275
Score = 38.1 bits (87), Expect(2) = 5e-87
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
V+ SAY +IK+KGYTSWAI LS+
Sbjct: 284 VIASAYNIIKMKGYTSWAIGLSV 306
>ref|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [Mus musculus].
Length = 471
Score = 122 bits (306), Expect(2) = 2e-30
Identities = 69/183 (37%), Positives = 107/183 (58%)
Frame = +3
Query: 192 NKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSG 371
NKIT ++I K +AD++ L+D+ + +G M DL +L P +
Sbjct: 183 NKITVVGSGDLGIACTLAISAKGIADKLLLLDLSDGMSQGTM-DLDIFNL----PNVEIS 237
Query: 372 KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPV 551
KD + +A+S++V+ TA + ES L+ VQ NV++F+ ++P + YS + LLV S PV
Sbjct: 238 KDLSASAHSKVVIFTANSLGGS-ESYLHAVQSNVDMFRALVPALGHYSQHAVLLVASQPV 296
Query: 552 DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPV 731
+I++YV WK+S FP RV+G GCNLDS R +Y++ L V W++GE G++ V
Sbjct: 297 EIMSYVTWKLSTFPATRVVGIGCNLDSQRLQYIITSVLKVQTSGKEVWVVGEQGENKVCS 356
Query: 732 WSG 740
WSG
Sbjct: 357 WSG 359
Score = 28.9 bits (63), Expect(2) = 2e-30
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 808 LESSSQTVVDS-AYEVIKLKGYTSWAIELSLA 900
L SSQ + S A E++K+KG SW++ LS+A
Sbjct: 364 LSPSSQAQLSSRAMELLKVKGQRSWSVGLSVA 395
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,313,532
Number of extensions: 869268
Number of successful extensions: 2499
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2494
Number of HSP's successfully gapped: 14
Length of query: 301
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 200
Effective length of database: 12,583,923
Effective search space: 2516784600
Effective search space used: 2516784600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa]. 423 e-126
Alignment gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l... 346 e-102
Alignment gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa]. 344 e-101
Alignment gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa]. 337 1e-98
Alignment gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 314 6e-92
Alignment gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B... 314 6e-92
Alignment gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 305 4e-89
Alignment gi|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-l... 182 3e-46
Alignment gi|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 130 1e-30
>ref|NP_001165834.1| L-lactate dehydrogenase A chain [Sus scrofa].
Length = 332
Score = 423 bits (1087), Expect(3) = e-126
Identities = 212/228 (92%), Positives = 213/228 (93%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
MATLKDQLIHNLLKEEHVPHNKIT ISILMKELADEIALVDVMEDKLKG
Sbjct: 1 MATLKDQLIHNLLKEEHVPHNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IPNIVKYSPNCKLLV SNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
Sbjct: 121 IPNIVKYSPNCKLLVASNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADK+ K
Sbjct: 181 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWK 228
Score = 46.2 bits (108), Expect(3) = e-126
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VVDSAYEVIKLKGYTSWAI LS+A
Sbjct: 234 VVDSAYEVIKLKGYTSWAIGLSVA 257
Score = 22.3 bits (46), Expect(3) = e-126
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2
Query: 806 HWKAVHKR 829
HWKAVHK+
Sbjct: 226 HWKAVHKQ 233
>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
Length = 428
Score = 346 bits (888), Expect(2) = e-102
Identities = 171/234 (73%), Positives = 199/234 (85%), Gaps = 1/234 (0%)
Frame = +3
Query: 120 SKSTMATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVME 296
++ TMATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+E
Sbjct: 90 NQRTMATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLE 149
Query: 297 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 476
DKLKGEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN
Sbjct: 150 DKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 209
Query: 477 IFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 656
+FKFIIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM
Sbjct: 210 VFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMA 269
Query: 657 ERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
E+LGVHP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 270 EKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 323
Score = 43.5 bits (101), Expect(2) = e-102
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 328 VVESAYEVIKLKGYTNWAIGLSVA 351
>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
Length = 334
Score = 344 bits (882), Expect(2) = e-101
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 1/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEH-VPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLK 308
MATLK++LI + +EE +P+NKIT ISIL K L DE+ALVDV+EDKLK
Sbjct: 1 MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 309 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKF 488
GEMMDLQHGSLFL+TPKIV+ KDY+VTANS++VV+TAG RQQEGESRLNLVQRNVN+FKF
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 489 IIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG 668
IIP IVKYSP+C ++VVSNPVDILTYV WK+SG PK+RVIGSGCNLDSARFRYLM E+LG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 669 VHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGKQ 818
VHP SCHGWILGEHGDSSV VWSGVNVAGVSL+ L+PE+GTD D + K+
Sbjct: 181 VHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKE 230
Score = 43.5 bits (101), Expect(2) = e-101
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV+SAYEVIKLKGYT+WAI LS+A
Sbjct: 235 VVESAYEVIKLKGYTNWAIGLSVA 258
>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
Length = 332
Score = 337 bits (864), Expect(2) = 1e-98
Identities = 163/228 (71%), Positives = 193/228 (84%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KIVSGKDY+V+ANS++V++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 671
IP IV++SP+CK+L+VSNPVDILTYVAWK+SG P RVIGSGCNLDSARFRYL+G++LGV
Sbjct: 121 IPTIVQHSPDCKMLIVSNPVDILTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGV 180
Query: 672 HPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
HP SCHGWI+GEHGDSSVP+WSGVNVAGV+LK L P+LGTD+DKD K
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWK 228
Score = 41.2 bits (95), Expect(2) = 1e-98
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSL 897
V+ SAYE+IKLKGYTSWAI LS+
Sbjct: 234 VIGSAYEIIKLKGYTSWAIGLSV 256
>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 314 bits (804), Expect(2) = 6e-92
Identities = 157/251 (62%), Positives = 192/251 (76%), Gaps = 4/251 (1%)
Frame = +3
Query: 75 APPTPARSALPI----PFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXI 242
AP + LP+ P S M+T++ +L+ N EE V NKI+ I
Sbjct: 27 APSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVHSNKISIVGTGSVGMACAI 86
Query: 243 SILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAG 422
SIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS KDY +TANS LV+ITAG
Sbjct: 87 SILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVSSKDYLITANSNLVIITAG 146
Query: 423 ARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNR 602
ARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NR
Sbjct: 147 ARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNPVDILTYVAWKLSEFPQNR 206
Query: 603 VIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 782
+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVPVWSGVN+AGV LKNL+ +
Sbjct: 207 IIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLD 266
Query: 783 LGTDADKDTGK 815
+GTD D + K
Sbjct: 267 IGTDKDPEQWK 277
Score = 42.0 bits (97), Expect(2) = 6e-92
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYE+IK+KGYTSWAI LS+A
Sbjct: 283 VVASAYEIIKMKGYTSWAIGLSVA 306
>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 314 bits (804), Expect(2) = 6e-92
Identities = 157/251 (62%), Positives = 192/251 (76%), Gaps = 4/251 (1%)
Frame = +3
Query: 75 APPTPARSALPI----PFGSKSTMATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXI 242
AP + LP+ P S M+T++ +L+ N EE V NKI+ I
Sbjct: 27 APSARRPAGLPLGDAWPVAPASKMSTVRCELMKNFTSEEVVHSNKISIVGTGSVGMACAI 86
Query: 243 SILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAG 422
SIL+K L DE+ALVDV E +LKGE MDLQHGS F++ P IVS KDY +TANS LV+ITAG
Sbjct: 87 SILLKGLTDELALVDVDESRLKGETMDLQHGSPFVKMPNIVSSKDYLITANSNLVIITAG 146
Query: 423 ARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNR 602
ARQ++GE+RLNLVQRNV IFK +I +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NR
Sbjct: 147 ARQEKGETRLNLVQRNVTIFKLMISSIVQYSPRCKLIVVSNPVDILTYVAWKLSEFPQNR 206
Query: 603 VIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPE 782
+IGSGCNLD+ARFR+L+G+RLG+H SCHGWILGEHGDSSVPVWSGVN+AGV LKNL+ +
Sbjct: 207 IIGSGCNLDTARFRFLIGQRLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLD 266
Query: 783 LGTDADKDTGK 815
+GTD D + K
Sbjct: 267 IGTDKDPEQWK 277
Score = 42.0 bits (97), Expect(2) = 6e-92
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYE+IK+KGYTSWAI LS+A
Sbjct: 283 VVASAYEIIKMKGYTSWAIGLSVA 306
>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
scrofa].
Length = 328
Score = 305 bits (780), Expect(2) = 4e-89
Identities = 151/230 (65%), Positives = 184/230 (80%), Gaps = 2/230 (0%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T++ +L+ N EE V NKI+ ISIL+K L DE+ALVDV E +LKG
Sbjct: 1 MSTVRCELMKNFTSEEVVHSNKISIVGTGSVGMACAISILLKGLTDELALVDVDESRLKG 60
Query: 312 EM--MDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFK 485
E MDLQHGS F++ P IVS KDY +TANS LV+ITAGARQ++GE+RLNLVQRNV IFK
Sbjct: 61 ETXTMDLQHGSPFVKMPNIVSSKDYLITANSNLVIITAGARQEKGETRLNLVQRNVTIFK 120
Query: 486 FIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 665
+I +IV+YSP CKL+VVSNPVDILTYVAWK+S FP+NR+IGSGCNLD+ARFR+L+G+RL
Sbjct: 121 LMISSIVQYSPRCKLIVVSNPVDILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180
Query: 666 GVHPLSCHGWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDADKDTGK 815
G+H SCHGWILGEHGDSSVPVWSGVN+AGV LKNL+ ++GTD D + K
Sbjct: 181 GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWK 230
Score = 42.0 bits (97), Expect(2) = 4e-89
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +1
Query: 829 VVDSAYEVIKLKGYTSWAIELSLA 900
VV SAYE+IK+KGYTSWAI LS+A
Sbjct: 236 VVASAYEIIKMKGYTSWAIGLSVA 259
>ref|XP_003122990.2| PREDICTED: l-lactate dehydrogenase C chain-like [Sus scrofa].
Length = 262
Score = 182 bits (461), Expect = 3e-46
Identities = 92/139 (66%), Positives = 112/139 (80%)
Frame = +3
Query: 132 MATLKDQLIHNLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKG 311
M+T+K+QLI NL++E+ V +KIT I IL+K+LADE+ALVDV DKLKG
Sbjct: 1 MSTVKEQLIENLIEEDEVSQSKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKG 60
Query: 312 EMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI 491
E MDLQHGSLF T KIVSGKDY+V+ANS+LV++TAGARQQEGESRL LVQRNVNI K I
Sbjct: 61 ETMDLQHGSLFFNTSKIVSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSI 120
Query: 492 IPNIVKYSPNCKLLVVSNP 548
IP IV++SP+CK+L+VSNP
Sbjct: 121 IPTIVQHSPDCKMLIVSNP 139
>ref|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 375
Score = 130 bits (327), Expect = 1e-30
Identities = 72/193 (37%), Positives = 110/193 (56%)
Frame = +3
Query: 162 NLLKEEHVPHNKITXXXXXXXXXXXXISILMKELADEIALVDVMEDKLKGEMMDLQHGSL 341
N +E+ +KIT ++I K +AD + L+D+ E KG MMDL +L
Sbjct: 173 NWANQENKTVSKITVVGGGELGIACTLAIAAKGIADRLVLLDLSEGT-KGGMMDLNIFNL 231
Query: 342 FLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN 521
P + KD + +A+S++V+ T + +S L++VQ NV++F+ ++P + YS +
Sbjct: 232 ----PNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQH 286
Query: 522 CKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 701
LLV S PV+I+TYV WK+S FP N+VIG GCNLDS R +Y++ L W++
Sbjct: 287 GVLLVASQPVEIMTYVTWKLSAFPANQVIGIGCNLDSQRLQYIITNILKAQTSGKEVWVI 346
Query: 702 GEHGDSSVPVWSG 740
GE G+ VP W G
Sbjct: 347 GEQGEDKVPTWGG 359
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,111,738
Number of extensions: 647165
Number of successful extensions: 2058
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2051
Number of HSP's successfully gapped: 17
Length of query: 301
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,904,026
Effective search space: 1807517278
Effective search space used: 1807517278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007002
(905 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 349 2e-93
gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533 184 6e-44
Sscrofa_Chr01 184 6e-44
Sscrofa_Chr04 58 9e-06
>Sscrofa_Chr02
|| Length = 162569375
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 374 agactataacgtgactgcaaactctaggctggttgttatcacagctggggcacgtcagca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904376 agactataacgtgactgcaaactctaggctggttgttatcacagctggggcacgtcagca 43904435
Query: 434 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904436 agagggagaaagccgtcttaatttggtccagcgtaatgtgaacatctttaaattcatcat 43904495
Query: 494 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904496 tcctaatattgtaaaatacagcccaaactgcaagttgcttgttgtttccaatccag 43904551
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 548 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905330 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 43905389
Query: 608 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905390 tggaagtggttgcaatttggattcagcccggttccgttacctaatgggggaaaggctggg 43905449
Query: 668 agttcaccccctaagctgtcatgggtggatccttggggagcatggagactctagtg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43905450 agttcaccccctaagctgtcatgggtggatccttggggagcatggagactctagtg 43905505
Score = 301 bits (152), Expect = 3e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 107 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900596 gattccttttggttctaaatccactatggcaactctcaaggatcagctgattcacaatct 43900655
Query: 167 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43900656 tcttaaggaagagcatgttccccacaataagattacagttgttggggttggtgctgttgg 43900715
Query: 227 catggcttgtgccatcagtatcttaatgaagg 258
||||||||||||||||||||||||||||||||
Sbjct: 43900716 catggcttgtgccatcagtatcttaatgaagg 43900747
Score = 238 bits (120), Expect = 4e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 256 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903297 aggaattggcggatgaaattgctctcgttgatgtcatggaagacaaactgaagggagaga 43903356
Query: 316 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903357 tgatggatctgcaacatggcagccttttccttaggaccccaaaaattgtctctggcaaag 43903416
Score = 204 bits (103), Expect = 6e-50
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 ttgcttttaaggcccctcccgcttcgcgctcgtagtaccggagcagctgccgccaagtcc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 43898253 ttgcttttaaggcccctcccgcttcgcgctcggagtaccggagcagctgccgccaagtcc 43898312
Query: 61 ggatccgacactgtgcgcctcccacgcccgcccgaagtgcactcccg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43898313 ggatccgacactgtgcgcctcccacgcccgcccgaagtgcactcccg 43898359
Score = 204 bits (103), Expect = 6e-50
Identities = 117/119 (98%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 723 gtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaagaatctgcaccctgaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906179 gtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaagaatctgcaccctgaa 43906238
Query: 783 ttaggcactgatgcagataagg-acactggaaagcagttcacaaac-ggtggtggacag 839
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 43906239 ttaggcactgatgcagataaggaacactggaaagcagttcacaaacaggtggtggacag 43906297
Score = 115 bits (58), Expect = 4e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 836 acagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattgaactatctt 895
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 43907758 acagtgcttatgaggtgatcaaactgaaaggctacacgtcctgggccattggactatctg 43907817
Query: 896 tggcacatct 905
||||| ||||
Sbjct: 43907818 tggcagatct 43907827
Score = 73.8 bits (37), Expect = 1e-10
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 548 agtggatatcttgacctatgtggcttggaagataagtggctttcccaaaaaccgtgttat 607
||||||||| |||||||| || ||||||||| |||||||||| || || ||||| ||
Sbjct: 43709921 agtggatattttgacctacgttgcttggaagttaagtggcttacctgcaactcgtgtaat 43709980
Query: 608 tggaagtggttgcaatttggattcagcccggttccgttacctaat 652
|||||||||||| ||| | || || ||||| ||||||||||||||
Sbjct: 43709981 tggaagtggttgtaatctagactctgcccgtttccgttacctaat 43710025
>gb|GL895649.2| Sus scrofa unplaced genomic scaffold ChrUScaf3533
Length = 59217
Score = 184 bits (93), Expect = 6e-44
Identities = 297/365 (81%)
Strand = Plus / Minus
Query: 409 ttatcacagctggggcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 468
|||||||||| || ||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 1417 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 1358
Query: 469 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 528
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 1357 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 1298
Query: 529 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 588
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 1297 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 1238
Query: 589 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 648
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 1237 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 1178
Query: 649 taatgggggaaaggctgggagttcaccccctaagctgtcatgggtggatccttggggagc 708
| || ||| | ||||| || | ||| | |||||||||||||||||||||||| ||||
Sbjct: 1177 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 1118
Query: 709 atggagactctagtgtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaaga 768
|||||||||| ||||| ||||||||||| ||||| || | ||||||||| | |||||||
Sbjct: 1117 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 1058
Query: 769 atctg 773
|||||
Sbjct: 1057 atctg 1053
>Sscrofa_Chr01
|| Length = 315321322
Score = 184 bits (93), Expect = 6e-44
Identities = 297/365 (81%)
Strand = Plus / Plus
Query: 409 ttatcacagctggggcacgtcagcaagagggagaaagccgtcttaatttggtccagcgta 468
|||||||||| || ||||| ||| || | ||||||| || |||||||| |||||||| |
Sbjct: 11733277 ttatcacagcgggtgcacgccaggaaaaaggagaaacacgccttaatttagtccagcgaa 11733336
Query: 469 atgtgaacatctttaaattcatcattcctaatattgtaaaatacagcccaaactgcaagt 528
|||||| |||||||||||| || ||| ||| ||| || | |||||||| ||||||
Sbjct: 11733337 atgtgaccatctttaaattaatgatttctagtatcgttcagtacagccctcgctgcaaac 11733396
Query: 529 tgcttgttgtttccaatccagtggatatcttgacctatgtggcttggaagataagtggct 588
|| |||| ||||||||||||||||||||||| || ||||| || |||||| | |||| |
Sbjct: 11733397 tgattgtcgtttccaatccagtggatatcttaacttatgtagcatggaagttgagtgaat 11733456
Query: 589 ttcccaaaaaccgtgttattggaagtggttgcaatttggattcagcccggttccgttacc 648
||||| |||||||| ||||||| |||||||| ||| |||| | ||||| ||||||| |
Sbjct: 11733457 ttccccaaaaccgtattattgggagtggttgtaatctggacactgcccgtttccgtttct 11733516
Query: 649 taatgggggaaaggctgggagttcaccccctaagctgtcatgggtggatccttggggagc 708
| || ||| | ||||| || | ||| | |||||||||||||||||||||||| ||||
Sbjct: 11733517 tgattgggcagaggcttggtatccactctgaaagctgtcatgggtggatccttggagagc 11733576
Query: 709 atggagactctagtgtgcctgtgtggagcggagtaaatgttgctggtgtctccctgaaga 768
|||||||||| ||||| ||||||||||| ||||| || | ||||||||| | |||||||
Sbjct: 11733577 atggagactcaagtgttcctgtgtggagtggagtgaacatcgctggtgtccctctgaaga 11733636
Query: 769 atctg 773
|||||
Sbjct: 11733637 atctg 11733641
>Sscrofa_Chr04
|| Length = 143465943
Score = 58.0 bits (29), Expect = 9e-06
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 538 tttccaatccagtggatatcttgacctatgtggcttggaagataagtggctttcccaaaa 597
|||||||||||||||||||||| || ||||| |||| ||| | |||| ||||||||||
Sbjct: 55275516 tttccaatccagtggatatcttaacttatgtaccttgaaagttgagtgcatttcccaaaa 55275575
Query: 598 accgtgttattggaagt 614
| | | |||||||||||
Sbjct: 55275576 atcatattattggaagt 55275592
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,464,226
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 13
Length of query: 905
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 884
Effective length of database: 2,808,413,156
Effective search space: 2482637229904
Effective search space used: 2482637229904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)