Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus]. 489 e-164
Alignment gi|NP_001073684.2| melanocyte protein PMEL precursor [Bos tauru... 130 2e-35
>ref|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus].
Length = 555
Score = 489 bits (1258), Expect(3) = e-164
Identities = 227/271 (83%), Positives = 242/271 (89%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLYCF KRF DVLSNERPS YMREHNQL+GWSSDENDWNEKLYP
Sbjct: 1 MECLYCFLGFLLLAAGLPLDAAKRFHDVLSNERPSGYMREHNQLSGWSSDENDWNEKLYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWKRGDSRWK+SWKGGRV+AVLTSDSPALVGSTITFAVNLVFPRCQKEDA GNIVYEKNC
Sbjct: 61 VWKRGDSRWKSSWKGGRVQAVLTSDSPALVGSTITFAVNLVFPRCQKEDASGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 805
RND+G SPD YVYNWTA TED+DW + TS+GHHNVFPDGKPFP PWK+NFVYVFHTLGQY
Sbjct: 121 RNDTGASPDLYVYNWTAGTEDSDWGNDTSEGHHNVFPDGKPFPRPWKKNFVYVFHTLGQY 180
Query: 806 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 985
FQKLG+CSV++SINTANV+LGPQ+MEVTVYRRH R YVPIAKVKDVYVVTDQIP+FVTMS
Sbjct: 181 FQKLGQCSVTISINTANVSLGPQIMEVTVYRRHRRAYVPIAKVKDVYVVTDQIPVFVTMS 240
Query: 986 QKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
QKNNRNSSDE FL+DLPI F VLIHDPSHFL
Sbjct: 241 QKNNRNSSDETFLRDLPITFSVLIHDPSHFL 271
Score = 107 bits (266), Expect(3) = e-164
Identities = 53/81 (65%), Positives = 56/81 (69%)
Frame = +1
Query: 1078 HESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXX 1257
+ESAIYYKWN GDNTGLFVSNN +NHTYVLNGTFS NLTVQA VPG C
Sbjct: 272 NESAIYYKWNFGDNTGLFVSNNHTLNHTYVLNGTFSLNLTVQAEVPGPCPLPSPRPPKTT 331
Query: 1258 XXLFLAGGKPLELREIPVENC 1320
L AG LELREIP E+C
Sbjct: 332 PPLVTAGDSTLELREIPDESC 352
Score = 24.6 bits (52), Expect(3) = e-164
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 1328 RYGYFMATITFV 1363
RYGYF ATIT V
Sbjct: 356 RYGYFKATITIV 367
>ref|NP_001073684.2| melanocyte protein PMEL precursor [Bos taurus].
Length = 649
Score = 130 bits (328), Expect(2) = 2e-35
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 4/222 (1%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W +S+ + W+GG + +++D P L+G+ +F++ L FP+ QK DG
Sbjct: 44 WNRQLYPEWT--ESQGPDCWRGGHISLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQ 101
Query: 605 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRNF 775
+++ N + W D T +FPDG+P P KR F
Sbjct: 102 VIWANNTIINGSQV-------WGGQLVYPQEPDDTC-----IFPDGEPCPSGPLSQKRCF 149
Query: 776 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 952
VYV+ T QY+Q LG +SI T LG MEVTVY R G ++YVP+A + +
Sbjct: 150 VYVWKTWDQYWQVLGGPVSGLSIGTDKAMLGTYNMEVTVYHRRGSQSYVPLAHSSSAFTI 209
Query: 953 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TDQ+P V++SQ + ++ FL+ P+ F + +HDPS +L
Sbjct: 210 TDQVPFSVSVSQLQALDGRNKRFLRKQPLTFALQLHDPSGYL 251
Score = 37.7 bits (86), Expect(2) = 2e-35
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 1096 YKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
Y W+ GD+TG +S + HTY+ +G + + +QA +P
Sbjct: 258 YTWDFGDSTGTLISRALTVTHTYLESGPVTAQVVLQAAIP 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,009,569
Number of extensions: 1467997
Number of successful extensions: 3673
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3668
Number of HSP's successfully gapped: 6
Length of query: 455
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,174,046
Effective search space: 4946742054
Effective search space used: 4946742054
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539472.2| PREDICTED: similar to glycoprotein (transmembra... 424 e-141
Alignment gi|XP_863198.1| PREDICTED: similar to glycoprotein (transmembra... 433 e-121
Alignment gi|NP_001096686.1| melanocyte protein Pmel 17 [Canis lupus fami... 134 6e-37
>ref|XP_539472.2| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform b
precursor isoform 2 [Canis familiaris].
Length = 554
Score = 424 bits (1090), Expect(2) = e-141
Identities = 203/274 (74%), Positives = 223/274 (81%), Gaps = 3/274 (1%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLYCF +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1 MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED GNIVYEKNC
Sbjct: 61 VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 796
ND+GPSPD YVYN WTE+ W +GT++ HH+VFPDGKPFPH WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYN---WTEEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177
Query: 797 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 976
GQY QKLGR S VS+NTANVTLGP +MEV VYRRH YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237
Query: 977 TMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TM QKN+RN SDE FL+DLPI+F+VLIHDPSHFL
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMFNVLIHDPSHFL 271
Score = 96.3 bits (238), Expect(2) = e-141
Identities = 50/81 (61%), Positives = 54/81 (66%)
Frame = +1
Query: 1078 HESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXX 1257
+ESAIYYKWN GDNTGLFVSN P +NHTYVLNGTFS NLTVQA+VPG C
Sbjct: 272 NESAIYYKWNFGDNTGLFVSNAPTLNHTYVLNGTFSLNLTVQASVPGPC-PSPSPTPPKP 330
Query: 1258 XXLFLAGGKPLELREIPVENC 1320
L AG PLELR+ C
Sbjct: 331 TSLSSAGDNPLELRKTSGITC 351
>ref|XP_863198.1| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform a
precursor isoform 3 [Canis familiaris].
Length = 581
Score = 433 bits (1113), Expect = e-121
Identities = 236/402 (58%), Positives = 267/402 (66%), Gaps = 36/402 (8%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLYCF +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1 MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED GNIVYEKNC
Sbjct: 61 VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 796
ND+GPSPD YVYN WTE+ W +GT++ HH+VFPDGKPFPH WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYN---WTEEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177
Query: 797 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 976
GQY QKLGR S VS+NTANVTLGP +MEV VYRRH YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237
Query: 977 TMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL------------------------MS 1084
TM QKN+RN SDE FL+DLPI+F+VLIHDPSHFL ++
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNAPTLN 297
Query: 1085 LPFTTSGIWGIILVCLFLTIPL*TIPMCSMEPSASTSLCKLQCLDF--VLHLHPD--LQK 1252
+ +G + + L + ++P P S P TSLCK L F + H P
Sbjct: 298 HTYVLNGTFSLNLT-VQASVP-GPCPSPSPTPPKPTSLCKPSPLSFFPLPHFSPSSFSSL 355
Query: 1253 PPLLCFSLVANPWS*GRFLLKTAD-----NRYGYFMATITFV 1363
P S NP L KT+ NRYGYF ATIT V
Sbjct: 356 PTSTLSSAGDNPLE----LRKTSGITCLINRYGYFKATITIV 393
>ref|NP_001096686.1| melanocyte protein Pmel 17 [Canis lupus familiaris].
Length = 658
Score = 134 bits (337), Expect(2) = 6e-37
Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 9/227 (3%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W +++ + W+GG+V +++D P LVG+ +F++ L FP QK DG
Sbjct: 44 WNRQLYPEWT--ETQRPDCWRGGQVSLKVSNDGPTLVGANASFSIALHFPESQKVLPDGQ 101
Query: 605 IVYEKNCRND-----SGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PWK 766
+V+ N D G P V + +FPDG+ P PW
Sbjct: 102 VVWANNTIIDGSQVWGGQPVYPQVLDDAC-----------------IFPDGRACPSGPWS 144
Query: 767 --RNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVY-RRHGRTYVPIAKVK 937
R+FVYV+ T GQY+Q LG +SI T LG MEVTVY RR ++YVP+A
Sbjct: 145 QTRSFVYVWKTWGQYWQVLGGPVSGLSIVTGKAVLGTHTMEVTVYHRRESQSYVPLAHSC 204
Query: 938 DVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
+ +TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L
Sbjct: 205 SAFTITDQVPFSVSVSQLQALDGGNKHFLRNHPLTFALRLHDPSGYL 251
Score = 39.7 bits (91), Expect(2) = 6e-37
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 1096 YKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
Y W+ GD+TG +S ++ HTY+ +G + + +QA +P
Sbjct: 258 YTWDFGDHTGTLISRALVVTHTYLESGPITAQVVLQAAIP 297
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,307,407
Number of extensions: 1508841
Number of successful extensions: 3635
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3626
Number of HSP's successfully gapped: 7
Length of query: 455
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 349
Effective length of database: 15,340,888
Effective search space: 5353969912
Effective search space used: 5353969912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002501.1| transmembrane glycoprotein NMB isoform b precur... 471 e-152
Alignment gi|NP_001005340.1| transmembrane glycoprotein NMB isoform a pre... 471 e-151
Alignment gi|NP_001186983.1| melanocyte protein Pmel 17 isoform 1 precurs... 137 2e-37
Alignment gi|NP_008859.1| melanocyte protein PMEL isoform 3 preproprotein... 137 2e-37
Alignment gi|NP_001186982.1| melanocyte protein PMEL isoform 2 precursor ... 101 1e-26
>ref|NP_002501.1| transmembrane glycoprotein NMB isoform b precursor [Homo sapiens].
Length = 560
Score = 471 bits (1213), Expect(2) = e-152
Identities = 222/274 (81%), Positives = 239/274 (87%), Gaps = 3/274 (1%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLY F KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 796
RN++G S DPYVYNWTAW+ED+D +GT Q HHNVFPDGKPFPH W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 797 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 976
GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 977 TMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TM QKN+RNSSDE FLKDLPI+F VLIHDPSHFL
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFL 274
Score = 87.8 bits (216), Expect(2) = e-152
Identities = 49/91 (53%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 1084 SAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXXXX 1263
S I YKW+ GDNTGLFVS N +NHTYVLNGTFS NLTV+A PG C
Sbjct: 277 STINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPT 336
Query: 1264 LFL--AGGKPLELREIPVENCR*QIWLLYGH 1350
L AG PLEL IP ENC+ YGH
Sbjct: 337 PSLGPAGDNPLELSRIPDENCQIN---RYGH 364
>ref|NP_001005340.1| transmembrane glycoprotein NMB isoform a precursor [Homo sapiens].
Length = 572
Score = 471 bits (1213), Expect(2) = e-151
Identities = 222/274 (81%), Positives = 239/274 (87%), Gaps = 3/274 (1%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLY F KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 796
RN++G S DPYVYNWTAW+ED+D +GT Q HHNVFPDGKPFPH W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 797 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 976
GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 977 TMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TM QKN+RNSSDE FLKDLPI+F VLIHDPSHFL
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFL 274
Score = 83.2 bits (204), Expect(2) = e-151
Identities = 49/103 (47%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Frame = +1
Query: 1084 SAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXXXX 1263
S I YKW+ GDNTGLFVS N +NHTYVLNGTFS NLTV+A PG C
Sbjct: 277 STINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPT 336
Query: 1264 LFL--------------AGGKPLELREIPVENCR*QIWLLYGH 1350
L AG PLEL IP ENC+ YGH
Sbjct: 337 PSLATTLKSYDSNTPGPAGDNPLELSRIPDENCQIN---RYGH 376
>ref|NP_001186983.1| melanocyte protein Pmel 17 isoform 1 precursor [Homo sapiens].
Length = 668
Score = 137 bits (346), Expect(2) = 2e-37
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 4/222 (1%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W +++ + W+GG+V +++D P L+G+ +F++ L FP QK DG
Sbjct: 44 WNRQLYPEWT--EAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101
Query: 605 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PW--KRNF 775
+++ N + W + T +FPDG P P W KR+F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149
Query: 776 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 952
VYV+ T GQY+Q LG +SI T LG MEVTVY R G R+YVP+A + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209
Query: 953 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYL 251
Score = 38.1 bits (87), Expect(2) = 2e-37
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 1081 ESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
E+ + Y W+ GD++G +S ++ HTY+ G + + +QA +P
Sbjct: 253 EADLSYTWDFGDSSGTLISRALVVTHTYLEPGPVTAQVVLQAAIP 297
>ref|NP_008859.1| melanocyte protein PMEL isoform 3 preproprotein [Homo sapiens].
Length = 661
Score = 137 bits (346), Expect(2) = 2e-37
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 4/222 (1%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W +++ + W+GG+V +++D P L+G+ +F++ L FP QK DG
Sbjct: 44 WNRQLYPEWT--EAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101
Query: 605 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PW--KRNF 775
+++ N + W + T +FPDG P P W KR+F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149
Query: 776 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 952
VYV+ T GQY+Q LG +SI T LG MEVTVY R G R+YVP+A + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209
Query: 953 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +L
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYL 251
Score = 38.1 bits (87), Expect(2) = 2e-37
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 1081 ESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
E+ + Y W+ GD++G +S ++ HTY+ G + + +QA +P
Sbjct: 253 EADLSYTWDFGDSSGTLISRALVVTHTYLEPGPVTAQVVLQAAIP 297
>ref|NP_001186982.1| melanocyte protein PMEL isoform 2 precursor [Homo sapiens].
Length = 575
Score = 101 bits (251), Expect(2) = 1e-26
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Frame = +2
Query: 728 VFPDGKPFPH-PW--KRNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYR 898
+FPDG P P W KR+FVYV+ T GQY+Q LG +SI T LG MEVTVY
Sbjct: 45 IFPDGGPCPSGSWSQKRSFVYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYH 104
Query: 899 RHG-RTYVPIAKVKDVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHF 1075
R G R+YVP+A + +TDQ+P V++SQ + ++ FL++ P+ F + +HDPS +
Sbjct: 105 RRGSRSYVPLAHSSSAFTITDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGY 164
Query: 1076 L 1078
L
Sbjct: 165 L 165
Score = 38.1 bits (87), Expect(2) = 1e-26
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 1081 ESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
E+ + Y W+ GD++G +S ++ HTY+ G + + +QA +P
Sbjct: 167 EADLSYTWDFGDSSGTLISRALVVTHTYLEPGPVTAQVVLQAAIP 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,524,253
Number of extensions: 1508078
Number of successful extensions: 3800
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3783
Number of HSP's successfully gapped: 12
Length of query: 455
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,802,980
Effective search space: 5166240020
Effective search space used: 5166240020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus m... 411 e-133
Alignment gi|NP_068682.2| melanocyte protein PMEL precursor [Mus musculus]. 137 1e-37
>ref|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus musculus].
Length = 574
Score = 411 bits (1056), Expect(2) = e-133
Identities = 191/252 (75%), Positives = 219/252 (86%), Gaps = 3/252 (1%)
Frame = +2
Query: 332 KRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYPVWKRGDSRWKNSWKGGRVRAVL 511
KRF+DVL +E+ +MREHNQL GWSSDEN+W+E LYPVW+RGD RWK+SW+GGRV+AVL
Sbjct: 23 KRFRDVLGHEQYPDHMREHNQLRGWSSDENEWDEHLYPVWRRGDGRWKDSWEGGRVQAVL 82
Query: 512 TSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNCRNDSGPSPDPYVYNWTAWTEDN 691
TSDSPALVGS ITF VNLVFPRCQKEDA+GNIVYEKNCRND G + D +VYNWTA +D
Sbjct: 83 TSDSPALVGSNITFVVNLVFPRCQKEDANGNIVYEKNCRNDLGLTSDLHVYNWTAGADDG 142
Query: 692 DWRDGTSQGHHNVFPDGKPFPHP--WKR-NFVYVFHTLGQYFQKLGRCSVSVSINTANVT 862
DW DGTS+ H FPD +PFP P WK+ +FVYVFHTLGQYFQKLGRCS VSINT N+T
Sbjct: 143 DWEDGTSRSQHLRFPDRRPFPRPHGWKKWSFVYVFHTLGQYFQKLGRCSARVSINTVNLT 202
Query: 863 LGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMSQKNNRNSSDEIFLKDLPII 1042
GPQVMEVTV+RR+GR Y+PI+KVKDVYV+TDQIP+FVTMSQKN+RN SDEIFL+DLPI+
Sbjct: 203 AGPQVMEVTVFRRYGRAYIPISKVKDVYVITDQIPVFVTMSQKNDRNLSDEIFLRDLPIV 262
Query: 1043 FHVLIHDPSHFL 1078
F VLIHDPSHFL
Sbjct: 263 FDVLIHDPSHFL 274
Score = 84.7 bits (208), Expect(2) = e-133
Identities = 47/100 (47%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Frame = +1
Query: 1078 HESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLC----------- 1224
++SAI YKWN GDNTGLFVSNN +NHTYVLNGTF+ NLTVQ VPG C
Sbjct: 275 NDSAISYKWNFGDNTGLFVSNNHTLNHTYVLNGTFNLNLTVQTAVPGPCPPPSPSTPPPP 334
Query: 1225 -------XXXXXXXXXXXXXLFLAGGKPLELREIPVENCR 1323
L G K +EL +I ENCR
Sbjct: 335 STPPSPPPSPLPTLSTPSPSLMPTGYKSMELSDISNENCR 374
>ref|NP_068682.2| melanocyte protein PMEL precursor [Mus musculus].
Length = 626
Score = 137 bits (344), Expect(2) = 1e-37
Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 5/223 (2%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W + + N W+GG+V + +D P LVG+ +F++ L FP QK DG
Sbjct: 43 WNRQLYPEWT--EVQGSNCWRGGQVSLRVINDGPTLVGANASFSIALHFPGSQKVLPDGQ 100
Query: 605 IVYEKNCR-NDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRN 772
+++ N N S VY E +D VFPDG P P P KR+
Sbjct: 101 VIWANNTIINGSQVWGGQPVYP----QEPDD---------ACVFPDGGPCPSGPKPPKRS 147
Query: 773 FVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYV 949
FVYV+ T G+Y+Q LG +SI T + LG MEVTVY R G ++YVP+A +
Sbjct: 148 FVYVWKTWGKYWQVLGGPVSRLSIATGHAKLGTHTMEVTVYHRRGSQSYVPLAHASSTFT 207
Query: 950 VTDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
+TDQ+P V++SQ + + FL++ P+IF + +HDPS +L
Sbjct: 208 ITDQVPFSVSVSQLQALDGETKHFLRNHPLIFALQLHDPSGYL 250
Score = 38.9 bits (89), Expect(2) = 1e-37
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 1081 ESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
E+ + Y W+ GD TG +S + HTY+ +G+ + + +QA +P
Sbjct: 252 EADLSYTWDFGDGTGTLISRALDVTHTYLESGSVTAQVVLQAAIP 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,295,436
Number of extensions: 1278507
Number of successful extensions: 3276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 5
Length of query: 455
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 350
Effective length of database: 12,463,779
Effective search space: 4362322650
Effective search space used: 4362322650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa]. 544 0.0
Alignment gi|XP_003361811.1| PREDICTED: melanocyte protein PMEL-like [Sus... 124 1e-34
>ref|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa].
Length = 550
Score = 544 bits (1401), Expect(3) = 0.0
Identities = 255/271 (94%), Positives = 256/271 (94%)
Frame = +2
Query: 266 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 445
MECLYCF KRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYCFLGFLLLAAILPLDAAKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 60
Query: 446 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 625
VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC
Sbjct: 61 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 120
Query: 626 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 805
RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY
Sbjct: 121 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 180
Query: 806 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 985
FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS
Sbjct: 181 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 240
Query: 986 QKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
QKNNRNSSDEIFLKDLPIIF+VLIHDPSHFL
Sbjct: 241 QKNNRNSSDEIFLKDLPIIFNVLIHDPSHFL 271
Score = 138 bits (348), Expect(3) = 0.0
Identities = 66/82 (80%), Positives = 68/82 (82%)
Frame = +1
Query: 1078 HESAIYYKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCXXXXXXXXXXX 1257
+ESAIYYKWN GDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLC
Sbjct: 272 NESAIYYKWNFGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVPGLCSSPSPRPPKTT 331
Query: 1258 XXLFLAGGKPLELREIPVENCR 1323
LFLAGGKPLELREIPVENC+
Sbjct: 332 PSLFLAGGKPLELREIPVENCK 353
Score = 30.8 bits (68), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 1325 NRYGYFMATITFVA 1366
NRYGYFMATIT VA
Sbjct: 355 NRYGYFMATITIVA 368
>ref|XP_003361811.1| PREDICTED: melanocyte protein PMEL-like [Sus scrofa].
Length = 637
Score = 124 bits (310), Expect(2) = 1e-34
Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 4/222 (1%)
Frame = +2
Query: 425 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 604
WN +LYP W + R + W+GGRV +++D P L+G+ +F++ L FP+ QK DG
Sbjct: 44 WNSQLYPEWT--EIRAPDCWRGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQ 101
Query: 605 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGK---PFPHPWKRNF 775
+++ N + Y W + T +FPDG P P +R+F
Sbjct: 102 VIWANNTIINGE-------YFWGGQPVYPQEPNATC-----IFPDGAACPPGPSSQRRSF 149
Query: 776 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 952
VYV+ GQY+Q LG +SI T L VY R G ++YVP+A + + V
Sbjct: 150 VYVWKAWGQYWQVLGGPVSGLSIGTGKAVLXXXXXXXXVYHRRGSQSYVPLAHSRSAFTV 209
Query: 953 TDQIPIFVTMSQKNNRNSSDEIFLKDLPIIFHVLIHDPSHFL 1078
TDQ+P V++SQ + ++ FL+ P+ F + +HDPS +L
Sbjct: 210 TDQVPFSVSVSQLQALDRGNKRFLRKQPLTFALQLHDPSGYL 251
Score = 41.2 bits (95), Expect(2) = 1e-34
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 1096 YKWNLGDNTGLFVSNNPIMNHTYVLNGTFSFNLTVQATVP 1215
Y W+ GDNTG +S ++ HTY+ +G + + +QA +P
Sbjct: 258 YTWDFGDNTGTLISRALVVTHTYLESGPVTAQVVLQAAIP 297
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,724,372
Number of extensions: 940270
Number of successful extensions: 2397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2393
Number of HSP's successfully gapped: 6
Length of query: 455
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,804,438
Effective search space: 3107966614
Effective search space used: 3107966614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007008
(1367 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 668 0.0
gb|GL894967.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 591 e-166
gb|GL895012.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 157 2e-35
>Sscrofa_Chr09
|| Length = 153670197
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Minus
Query: 1 acaacactgaaatggtgtgcatttgaaaagtgaatagatgctaagagcgaatgagtcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443833 acaacactgaaatggtgtgcatttgaaaagtgaatagatgctaagagcgaatgagtcaga 101443774
Query: 61 agcacatgagttctaagtggttgaactccagagagcagatcaagcaatgctgtttaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443773 agcacatgagttctaagtggttgaactccagagagcagatcaagcaatgctgtttaatac 101443714
Query: 121 catcacatgatctgccccgaggcccagtatttcattaaaacaaggaacagggcacagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443713 catcacatgatctgccccgaggcccagtatttcattaaaacaaggaacagggcacagcag 101443654
Query: 181 aagccaggagagcactgttcttagtggatggagccagaagagttacaagttaaaccttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443653 aagccaggagagcactgttcttagtggatggagccagaagagttacaagttaaaccttga 101443594
Query: 241 tttcccgggtctgtgaagattcagcatggaatgtctctactgttttctgggatttctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443593 tttcccgggtctgtgaagattcagcatggaatgtctctactgttttctgggatttctgct 101443534
Query: 301 tctggctgcaatattgccacttgatgccgccaaacgg 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 101443533 tctggctgcaatattgccacttgatgccgccaaacgg 101443497
>gb|GL894967.1| Sus scrofa unplaced genomic scaffold chrU_scaffold358
Length = 749
Score = 591 bits (298), Expect = e-166
Identities = 311/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 955 agaccagattcccatatttgtgactatgtcccagaagaacaatcgaaattcatctgatga 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccagattcccatatttgtgactatgtcccagaagaacaatcgaaattcatctgatga 260
Query: 1015 aatcttcctcaaggacctccccattatcttccatgtcctgattcatgatcccagccactt 1074
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatcttcctcaaggacctccccattatcttcaatgtcctgattcatgatcccagccactt 320
Query: 1075 cctca-tgagtctgccatttactacaagtggaatttgggggataatactggtctgtttgt 1133
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cctcaatgagtctgccatttactacaagtggaattttggggataatactggtctgtttgt 380
Query: 1134 ttctaacaatcccattatgaaccatacctatgtgctcaatggaaccttcagcttcaacct 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaacaatcccattatgaaccatacctatgtgctcaatggaaccttcagcttcaacct 440
Query: 1194 cactgtgcaagctacagtgcctggactttgttcttcaccttcacccagacctccaaaaac 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgtgcaagctacagtgcctggactttgttcttcaccttcacccagacctccaaaaac 500
Query: 1254 caccccttctttgt 1267
||||||||||||||
Sbjct: 501 caccccttctttgt 514
>gb|GL895012.1| Sus scrofa unplaced genomic scaffold chrU_scaffold362
Length = 763
Score = 157 bits (79), Expect = 2e-35
Identities = 96/99 (96%), Gaps = 2/99 (2%)
Strand = Plus / Minus
Query: 1268 ttctcgctggtggcaaacccctggagctgagggagattcctgttgaaaactgc-aga-ta 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 457 ttctcgctggtggcaaacccctggagctgagggagattcctgttgaaaactgcaagatta 398
Query: 1326 acagatatggctactttatggccaccatcacatttgtag 1364
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 acagatatggctactttatggccaccatcacaattgtag 359
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,897,691
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 3
Length of query: 1367
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1346
Effective length of database: 2,808,413,156
Effective search space: 3780124107976
Effective search space used: 3780124107976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)