Animal-Genome cDNA 20110601C-007009


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus].      461   e-146
Alignment   gi|NP_001073684.2| melanocyte protein PMEL precursor [Bos tauru...   120   1e-31

>ref|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus].
          Length = 555

 Score =  461 bits (1186), Expect(3) = e-146
 Identities = 214/260 (82%), Positives = 229/260 (88%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLYCF               KRF DVLSNERPS YMREHNQL+GWSSDENDWNEKLYP
Sbjct: 1   MECLYCFLGFLLLAAGLPLDAAKRFHDVLSNERPSGYMREHNQLSGWSSDENDWNEKLYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWKRGDSRWK+SWKGGRV+AVLTSDSPALVGSTITFAVNLVFPRCQKEDA GNIVYEKNC
Sbjct: 61  VWKRGDSRWKSSWKGGRVQAVLTSDSPALVGSTITFAVNLVFPRCQKEDASGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 663
           RND+G SPD YVYNWTA TED+DW + TS+GHHNVFPDGKPFP PWK+NFVYVFHTLGQY
Sbjct: 121 RNDTGASPDLYVYNWTAGTEDSDWGNDTSEGHHNVFPDGKPFPRPWKKNFVYVFHTLGQY 180

Query: 664 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 843
           FQKLG+CSV++SINTANV+LGPQ+MEVTVYRRH R YVPIAKVKDVYVVTDQIP+FVTMS
Sbjct: 181 FQKLGQCSVTISINTANVSLGPQIMEVTVYRRHRRAYVPIAKVKDVYVVTDQIPVFVTMS 240

Query: 844 QKKTSNSSDEIFLKDLPIIF 903
           QK   NSSDE FL+DLPI F
Sbjct: 241 QKNNRNSSDETFLRDLPITF 260



 Score = 67.0 bits (162), Expect(3) = e-146
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 891 PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVSN 998
           P    VL HDPSHFL+ESAIYYKWNFGDNTGLFVSN
Sbjct: 257 PITFSVLIHDPSHFLNESAIYYKWNFGDNTGLFVSN 292



 Score = 30.4 bits (67), Expect(3) = e-146
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 1007 MNHTYVLNGTLSFNL 1051
            +NHTYVLNGT S NL
Sbjct: 296  LNHTYVLNGTFSLNL 310


>ref|NP_001073684.2| melanocyte protein PMEL precursor [Bos taurus].
          Length = 649

 Score =  120 bits (302), Expect(2) = 1e-31
 Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 4/211 (1%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   +S+  + W+GG +   +++D P L+G+  +F++ L FP+ QK   DG 
Sbjct: 44  WNRQLYPEWT--ESQGPDCWRGGHISLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQ 101

Query: 463 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRNF 633
           +++  N   +           W          D T      +FPDG+P P      KR F
Sbjct: 102 VIWANNTIINGSQV-------WGGQLVYPQEPDDTC-----IFPDGEPCPSGPLSQKRCF 149

Query: 634 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 810
           VYV+ T  QY+Q LG     +SI T    LG   MEVTVY R G ++YVP+A     + +
Sbjct: 150 VYVWKTWDQYWQVLGGPVSGLSIGTDKAMLGTYNMEVTVYHRRGSQSYVPLAHSSSAFTI 209

Query: 811 TDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           TDQ+P  V++SQ +  +  ++ FL+  P+ F
Sbjct: 210 TDQVPFSVSVSQLQALDGRNKRFLRKQPLTF 240



 Score = 35.0 bits (79), Expect(2) = 1e-31
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L  + + Y W+FGD+TG  +S
Sbjct: 245 HDPSGYLAGADLSYTWDFGDSTGTLIS 271


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,822,501
Number of extensions: 1150379
Number of successful extensions: 2858
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2853
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_863198.1| PREDICTED: similar to glycoprotein (transmembra...   397   e-128
Alignment   gi|XP_539472.2| PREDICTED: similar to glycoprotein (transmembra...   397   e-128
Alignment   gi|NP_001096686.1| melanocyte protein Pmel 17 [Canis lupus fami...   124   7e-33

>ref|XP_863198.1| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform a
           precursor isoform 3 [Canis familiaris].
          Length = 581

 Score =  397 bits (1020), Expect(3) = e-128
 Identities = 191/263 (72%), Positives = 209/263 (79%), Gaps = 3/263 (1%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLYCF                +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1   MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED  GNIVYEKNC
Sbjct: 61  VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 654
            ND+GPSPD YVYN   WTE+  W +GT++ HH+VFPDGKPFPH   WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYN---WTEEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177

Query: 655 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 834
           GQY QKLGR S  VS+NTANVTLGP +MEV VYRRH   YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237

Query: 835 TMSQKKTSNSSDEIFLKDLPIIF 903
           TM QK   N SDE FL+DLPI+F
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMF 260



 Score = 70.5 bits (171), Expect(3) = e-128
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 891  PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVSNIP 1004
            P   +VL HDPSHFL+ESAIYYKWNFGDNTGLFVSN P
Sbjct: 257  PIMFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNAP 294



 Score = 32.7 bits (73), Expect(3) = e-128
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 1001 PIMNHTYVLNGTLSFNL 1051
            P +NHTYVLNGT S NL
Sbjct: 294  PTLNHTYVLNGTFSLNL 310


>ref|XP_539472.2| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform b
           precursor isoform 2 [Canis familiaris].
          Length = 554

 Score =  397 bits (1020), Expect(3) = e-128
 Identities = 191/263 (72%), Positives = 209/263 (79%), Gaps = 3/263 (1%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLYCF                +F DVLSNER S Y+REHNQL GWSSDENDWNE+LYP
Sbjct: 1   MECLYCFLGCLLLAARLPLDAAIKFHDVLSNERISGYLREHNQLTGWSSDENDWNEELYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWK+GDSRWKNSWKGG VRA+LTSDSPALVGSTITF V+LVFPRCQ+ED  GNIVYEKNC
Sbjct: 61  VWKKGDSRWKNSWKGGHVRAILTSDSPALVGSTITFVVDLVFPRCQREDVSGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 654
            ND+GPSPD YVYN   WTE+  W +GT++ HH+VFPDGKPFPH   WKR NFVYVF TL
Sbjct: 121 GNDTGPSPDLYVYN---WTEEGSWGNGTNEHHHDVFPDGKPFPHHPGWKRCNFVYVFRTL 177

Query: 655 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 834
           GQY QKLGR S  VS+NTANVTLGP +MEV VYRRH   YVPIAKVKDVYVVTD IP+FV
Sbjct: 178 GQYLQKLGRGSARVSVNTANVTLGPHLMEVIVYRRHRHAYVPIAKVKDVYVVTDHIPVFV 237

Query: 835 TMSQKKTSNSSDEIFLKDLPIIF 903
           TM QK   N SDE FL+DLPI+F
Sbjct: 238 TMYQKNDRNLSDETFLRDLPIMF 260



 Score = 70.5 bits (171), Expect(3) = e-128
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 891  PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVSNIP 1004
            P   +VL HDPSHFL+ESAIYYKWNFGDNTGLFVSN P
Sbjct: 257  PIMFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNAP 294



 Score = 32.7 bits (73), Expect(3) = e-128
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 1001 PIMNHTYVLNGTLSFNL 1051
            P +NHTYVLNGT S NL
Sbjct: 294  PTLNHTYVLNGTFSLNL 310


>ref|NP_001096686.1| melanocyte protein Pmel 17 [Canis lupus familiaris].
          Length = 658

 Score =  124 bits (311), Expect(2) = 7e-33
 Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   +++  + W+GG+V   +++D P LVG+  +F++ L FP  QK   DG 
Sbjct: 44  WNRQLYPEWT--ETQRPDCWRGGQVSLKVSNDGPTLVGANASFSIALHFPESQKVLPDGQ 101

Query: 463 IVYEKNCRND-----SGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PWK 624
           +V+  N   D      G    P V +                    +FPDG+  P  PW 
Sbjct: 102 VVWANNTIIDGSQVWGGQPVYPQVLDDAC-----------------IFPDGRACPSGPWS 144

Query: 625 --RNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVY-RRHGRTYVPIAKVK 795
             R+FVYV+ T GQY+Q LG     +SI T    LG   MEVTVY RR  ++YVP+A   
Sbjct: 145 QTRSFVYVWKTWGQYWQVLGGPVSGLSIVTGKAVLGTHTMEVTVYHRRESQSYVPLAHSC 204

Query: 796 DVYVVTDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
             + +TDQ+P  V++SQ +  +  ++ FL++ P+ F
Sbjct: 205 SAFTITDQVPFSVSVSQLQALDGGNKHFLRNHPLTF 240



 Score = 35.4 bits (80), Expect(2) = 7e-33
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L  + + Y W+FGD+TG  +S
Sbjct: 245 HDPSGYLSGADLSYTWDFGDHTGTLIS 271


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,697,687
Number of extensions: 1190349
Number of successful extensions: 2788
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2779
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001005340.1| transmembrane glycoprotein NMB isoform a pre...   445   e-137
Alignment   gi|NP_002501.1| transmembrane glycoprotein NMB isoform b precur...   445   e-137
Alignment   gi|NP_001186983.1| melanocyte protein Pmel 17 isoform 1 precurs...   128   3e-34
Alignment   gi|NP_008859.1| melanocyte protein PMEL isoform 3 preproprotein...   128   3e-34
Alignment   gi|NP_001186982.1| melanocyte protein PMEL isoform 2 precursor ...    92   2e-23

>ref|NP_001005340.1| transmembrane glycoprotein NMB isoform a precursor [Homo sapiens].
          Length = 572

 Score =  445 bits (1145), Expect(3) = e-137
 Identities = 210/263 (79%), Positives = 226/263 (85%), Gaps = 3/263 (1%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLY F               KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1   MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61  VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 654
           RN++G S DPYVYNWTAW+ED+D  +GT Q HHNVFPDGKPFPH   W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180

Query: 655 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 834
           GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240

Query: 835 TMSQKKTSNSSDEIFLKDLPIIF 903
           TM QK   NSSDE FLKDLPI+F
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMF 263



 Score = 55.5 bits (132), Expect(3) = e-137
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +3

Query: 891 PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVS 995
           P    VL HDPSHFL+ S I YKW+FGDNTGLFVS
Sbjct: 260 PIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVS 294



 Score = 30.0 bits (66), Expect(3) = e-137
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 1007 MNHTYVLNGTLSFNL 1051
            +NHTYVLNGT S NL
Sbjct: 299  VNHTYVLNGTFSLNL 313


>ref|NP_002501.1| transmembrane glycoprotein NMB isoform b precursor [Homo sapiens].
          Length = 560

 Score =  445 bits (1145), Expect(3) = e-137
 Identities = 210/263 (79%), Positives = 226/263 (85%), Gaps = 3/263 (1%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLY F               KRF DVL NERPS+YMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1   MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWKRGD RWKNSWKGGRV+AVLTSDSPALVGS ITFAVNL+FPRCQKEDA+GNIVYEKNC
Sbjct: 61  VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH--PWKR-NFVYVFHTL 654
           RN++G S DPYVYNWTAW+ED+D  +GT Q HHNVFPDGKPFPH   W+R NF+YVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180

Query: 655 GQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFV 834
           GQYFQKLGRCSV VS+NTANVTLGPQ+MEVTVYRRHGR YVPIA+VKDVYVVTDQIP+FV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240

Query: 835 TMSQKKTSNSSDEIFLKDLPIIF 903
           TM QK   NSSDE FLKDLPI+F
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMF 263



 Score = 55.5 bits (132), Expect(3) = e-137
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +3

Query: 891 PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVS 995
           P    VL HDPSHFL+ S I YKW+FGDNTGLFVS
Sbjct: 260 PIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVS 294



 Score = 30.0 bits (66), Expect(3) = e-137
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 1007 MNHTYVLNGTLSFNL 1051
            +NHTYVLNGT S NL
Sbjct: 299  VNHTYVLNGTFSLNL 313


>ref|NP_001186983.1| melanocyte protein Pmel 17 isoform 1 precursor [Homo sapiens].
          Length = 668

 Score =  128 bits (321), Expect(2) = 3e-34
 Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 4/211 (1%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   +++  + W+GG+V   +++D P L+G+  +F++ L FP  QK   DG 
Sbjct: 44  WNRQLYPEWT--EAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101

Query: 463 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PW--KRNF 633
           +++  N            +     W     +   T      +FPDG P P   W  KR+F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149

Query: 634 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 810
           VYV+ T GQY+Q LG     +SI T    LG   MEVTVY R G R+YVP+A     + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209

Query: 811 TDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           TDQ+P  V++SQ +  +  ++ FL++ P+ F
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTF 240



 Score = 36.2 bits (82), Expect(2) = 3e-34
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L E+ + Y W+FGD++G  +S
Sbjct: 245 HDPSGYLAEADLSYTWDFGDSSGTLIS 271


>ref|NP_008859.1| melanocyte protein PMEL isoform 3 preproprotein [Homo sapiens].
          Length = 661

 Score =  128 bits (321), Expect(2) = 3e-34
 Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 4/211 (1%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   +++  + W+GG+V   +++D P L+G+  +F++ L FP  QK   DG 
Sbjct: 44  WNRQLYPEWT--EAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101

Query: 463 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH-PW--KRNF 633
           +++  N            +     W     +   T      +FPDG P P   W  KR+F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149

Query: 634 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 810
           VYV+ T GQY+Q LG     +SI T    LG   MEVTVY R G R+YVP+A     + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209

Query: 811 TDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           TDQ+P  V++SQ +  +  ++ FL++ P+ F
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTF 240



 Score = 36.2 bits (82), Expect(2) = 3e-34
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L E+ + Y W+FGD++G  +S
Sbjct: 245 HDPSGYLAEADLSYTWDFGDSSGTLIS 271


>ref|NP_001186982.1| melanocyte protein PMEL isoform 2 precursor [Homo sapiens].
          Length = 575

 Score = 91.7 bits (226), Expect(2) = 2e-23
 Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
 Frame = +1

Query: 586 VFPDGKPFPH-PW--KRNFVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYR 756
           +FPDG P P   W  KR+FVYV+ T GQY+Q LG     +SI T    LG   MEVTVY 
Sbjct: 45  IFPDGGPCPSGSWSQKRSFVYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYH 104

Query: 757 RHG-RTYVPIAKVKDVYVVTDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           R G R+YVP+A     + +TDQ+P  V++SQ +  +  ++ FL++ P+ F
Sbjct: 105 RRGSRSYVPLAHSSSAFTITDQVPFSVSVSQLRALDGGNKHFLRNQPLTF 154



 Score = 36.2 bits (82), Expect(2) = 2e-23
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L E+ + Y W+FGD++G  +S
Sbjct: 159 HDPSGYLAEADLSYTWDFGDSSGTLIS 185


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,049,423
Number of extensions: 1184847
Number of successful extensions: 2948
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2933
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus m...   385   e-121
Alignment   gi|NP_068682.2| melanocyte protein PMEL precursor [Mus musculus].    127   3e-34

>ref|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus musculus].
          Length = 574

 Score =  385 bits (988), Expect(3) = e-121
 Identities = 179/241 (74%), Positives = 206/241 (85%), Gaps = 3/241 (1%)
 Frame = +1

Query: 190 KRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYPVWKRGDSRWKNSWKGGRVRAVL 369
           KRF+DVL +E+   +MREHNQL GWSSDEN+W+E LYPVW+RGD RWK+SW+GGRV+AVL
Sbjct: 23  KRFRDVLGHEQYPDHMREHNQLRGWSSDENEWDEHLYPVWRRGDGRWKDSWEGGRVQAVL 82

Query: 370 TSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNCRNDSGPSPDPYVYNWTAWTEDN 549
           TSDSPALVGS ITF VNLVFPRCQKEDA+GNIVYEKNCRND G + D +VYNWTA  +D 
Sbjct: 83  TSDSPALVGSNITFVVNLVFPRCQKEDANGNIVYEKNCRNDLGLTSDLHVYNWTAGADDG 142

Query: 550 DWRDGTSQGHHNVFPDGKPFPHP--WKR-NFVYVFHTLGQYFQKLGRCSVSVSINTANVT 720
           DW DGTS+  H  FPD +PFP P  WK+ +FVYVFHTLGQYFQKLGRCS  VSINT N+T
Sbjct: 143 DWEDGTSRSQHLRFPDRRPFPRPHGWKKWSFVYVFHTLGQYFQKLGRCSARVSINTVNLT 202

Query: 721 LGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMSQKKTSNSSDEIFLKDLPII 900
            GPQVMEVTV+RR+GR Y+PI+KVKDVYV+TDQIP+FVTMSQK   N SDEIFL+DLPI+
Sbjct: 203 AGPQVMEVTVFRRYGRAYIPISKVKDVYVITDQIPVFVTMSQKNDRNLSDEIFLRDLPIV 262

Query: 901 F 903
           F
Sbjct: 263 F 263



 Score = 62.8 bits (151), Expect(3) = e-121
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = +3

Query: 891 PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVSN 998
           P    VL HDPSHFL++SAI YKWNFGDNTGLFVSN
Sbjct: 260 PIVFDVLIHDPSHFLNDSAISYKWNFGDNTGLFVSN 295



 Score = 29.3 bits (64), Expect(3) = e-121
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 1007 MNHTYVLNGTLSFNL 1051
            +NHTYVLNGT + NL
Sbjct: 299  LNHTYVLNGTFNLNL 313


>ref|NP_068682.2| melanocyte protein PMEL precursor [Mus musculus].
          Length = 626

 Score =  127 bits (318), Expect(2) = 3e-34
 Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   + +  N W+GG+V   + +D P LVG+  +F++ L FP  QK   DG 
Sbjct: 43  WNRQLYPEWT--EVQGSNCWRGGQVSLRVINDGPTLVGANASFSIALHFPGSQKVLPDGQ 100

Query: 463 IVYEKNCR-NDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPH---PWKRN 630
           +++  N   N S       VY      E +D           VFPDG P P    P KR+
Sbjct: 101 VIWANNTIINGSQVWGGQPVYP----QEPDD---------ACVFPDGGPCPSGPKPPKRS 147

Query: 631 FVYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYV 807
           FVYV+ T G+Y+Q LG     +SI T +  LG   MEVTVY R G ++YVP+A     + 
Sbjct: 148 FVYVWKTWGKYWQVLGGPVSRLSIATGHAKLGTHTMEVTVYHRRGSQSYVPLAHASSTFT 207

Query: 808 VTDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           +TDQ+P  V++SQ +  +   + FL++ P+IF
Sbjct: 208 ITDQVPFSVSVSQLQALDGETKHFLRNHPLIF 239



 Score = 37.4 bits (85), Expect(2) = 3e-34
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L E+ + Y W+FGD TG  +S
Sbjct: 244 HDPSGYLAEADLSYTWDFGDGTGTLIS 270


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,659,104
Number of extensions: 1005464
Number of successful extensions: 2571
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2567
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa].      515   e-165
Alignment   gi|XP_003361811.1| PREDICTED: melanocyte protein PMEL-like [Sus...   114   2e-30

>ref|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa].
          Length = 550

 Score =  515 bits (1327), Expect(3) = e-165
 Identities = 242/260 (93%), Positives = 242/260 (93%)
 Frame = +1

Query: 124 MECLYCFXXXXXXXXXXXXXXXKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 303
           MECLYCF               KRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1   MECLYCFLGFLLLAAILPLDAAKRFQDVLSNERPSSYMREHNQLNGWSSDENDWNEKLYP 60

Query: 304 VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 483
           VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC
Sbjct: 61  VWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGNIVYEKNC 120

Query: 484 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 663
           RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY
Sbjct: 121 RNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGKPFPHPWKRNFVYVFHTLGQY 180

Query: 664 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 843
           FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS
Sbjct: 181 FQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVVTDQIPIFVTMS 240

Query: 844 QKKTSNSSDEIFLKDLPIIF 903
           QK   NSSDEIFLKDLPIIF
Sbjct: 241 QKNNRNSSDEIFLKDLPIIF 260



 Score = 70.5 bits (171), Expect(3) = e-165
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +3

Query: 891  PHYLHVLNHDPSHFLHESAIYYKWNFGDNTGLFVSNIPL 1007
            P   +VL HDPSHFL+ESAIYYKWNFGDNTGLFVSN P+
Sbjct: 257  PIIFNVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNPI 295



 Score = 38.5 bits (88), Expect(3) = e-165
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 998  HPIMNHTYVLNGTLSFNL 1051
            +PIMNHTYVLNGT SFNL
Sbjct: 293  NPIMNHTYVLNGTFSFNL 310


>ref|XP_003361811.1| PREDICTED: melanocyte protein PMEL-like [Sus scrofa].
          Length = 637

 Score =  114 bits (284), Expect(2) = 2e-30
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 4/211 (1%)
 Frame = +1

Query: 283 WNEKLYPVWKRGDSRWKNSWKGGRVRAVLTSDSPALVGSTITFAVNLVFPRCQKEDADGN 462
           WN +LYP W   + R  + W+GGRV   +++D P L+G+  +F++ L FP+ QK   DG 
Sbjct: 44  WNSQLYPEWT--EIRAPDCWRGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQ 101

Query: 463 IVYEKNCRNDSGPSPDPYVYNWTAWTEDNDWRDGTSQGHHNVFPDGK---PFPHPWKRNF 633
           +++  N   +         Y W          + T      +FPDG    P P   +R+F
Sbjct: 102 VIWANNTIINGE-------YFWGGQPVYPQEPNATC-----IFPDGAACPPGPSSQRRSF 149

Query: 634 VYVFHTLGQYFQKLGRCSVSVSINTANVTLGPQVMEVTVYRRHG-RTYVPIAKVKDVYVV 810
           VYV+   GQY+Q LG     +SI T    L        VY R G ++YVP+A  +  + V
Sbjct: 150 VYVWKAWGQYWQVLGGPVSGLSIGTGKAVLXXXXXXXXVYHRRGSQSYVPLAHSRSAFTV 209

Query: 811 TDQIPIFVTMSQKKTSNSSDEIFLKDLPIIF 903
           TDQ+P  V++SQ +  +  ++ FL+  P+ F
Sbjct: 210 TDQVPFSVSVSQLQALDRGNKRFLRKQPLTF 240



 Score = 37.0 bits (84), Expect(2) = 2e-30
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 915 HDPSHFLHESAIYYKWNFGDNTGLFVS 995
           HDPS +L  + + Y W+FGDNTG  +S
Sbjct: 245 HDPSGYLAGADLSYTWDFGDNTGTLIS 271


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,899,398
Number of extensions: 738665
Number of successful extensions: 1898
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1894
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007009
         (1051 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         387   e-105
gb|GL894967.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   377   e-102

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  387 bits (195), Expect = e-105
 Identities = 195/195 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         cccagtatttcattaaaacaaggaacagggcacagcagaagccaggagagcactgttctt 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443691 cccagtatttcattaaaacaaggaacagggcacagcagaagccaggagagcactgttctt 101443632

                                                                             
Query: 61        agtggatggagccagaagagttacaagttaaaccttgatttcccgggtctgtgaagattc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443631 agtggatggagccagaagagttacaagttaaaccttgatttcccgggtctgtgaagattc 101443572

                                                                             
Query: 121       agcatggaatgtctctactgttttctgggatttctgcttctggctgcaatattgccactt 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101443571 agcatggaatgtctctactgttttctgggatttctgcttctggctgcaatattgccactt 101443512

                                
Query: 181       gatgccgccaaacgg 195
                 |||||||||||||||
Sbjct: 101443511 gatgccgccaaacgg 101443497


>gb|GL894967.1| Sus scrofa unplaced genomic scaffold chrU_scaffold358
          Length = 749

 Score =  377 bits (190), Expect = e-102
 Identities = 233/242 (96%), Gaps = 4/242 (1%)
 Strand = Plus / Plus

                                                                        
Query: 813  agaccagattcccatatttgtgactatgtcccagaagaaaacatcgaa-ttcatctgatg 871
            ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 201  agaccagattcccatatttgtgactatgtcccagaagaaca-atcgaaattcatctgatg 259

                                                                        
Query: 872  aaatcttcctcaaggacctccccattatcttca-tgtcctgaatcatgatcccagccact 930
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 260  aaatcttcctcaaggacctccccattatcttcaatgtcctgattcatgatcccagccact 319

                                                                        
Query: 931  tccttcatgagtctgccatttactacaagtggaattttggggataatactggtctgtttg 990
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320  tcctcaatgagtctgccatttactacaagtggaattttggggataatactggtctgtttg 379

                                                                        
Query: 991  tttctaac-atcccattatgaaccatacctatgtgctcaatggaaccctcagcttcaacc 1049
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380  tttctaacaatcccattatgaaccatacctatgtgctcaatggaaccttcagcttcaacc 439

              
Query: 1050 tc 1051
            ||
Sbjct: 440  tc 441


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,011,108
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)