Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136389.1| fibrinogen beta chain [Bos taurus]. 500 e-144
Alignment gi|NP_001039562.1| fibroleukin precursor [Bos taurus]. 75 1e-27
Alignment gi|NP_776336.1| fibrinogen gamma-B chain precursor [Bos taurus]. 94 4e-27
Alignment gi|NP_001068894.1| angiopoietin-related protein 1 precursor [Bo... 66 8e-24
Alignment gi|NP_001014909.1| angiopoietin-related protein 7 precursor [Bo... 68 6e-23
Alignment gi|NP_001070265.1| angiopoietin-1 precursor [Bos taurus]. 66 5e-22
Alignment gi|XP_002707737.1| PREDICTED: microfibrillar-associated protein... 70 2e-21
Alignment gi|NP_001010996.1| ficolin-2 precursor [Bos taurus]. 63 3e-21
Alignment gi|XP_610224.4| PREDICTED: microfibrillar-associated protein 4-... 70 9e-19
Alignment gi|NP_001192770.1| tenascin-N [Bos taurus]. 58 2e-17
>ref|NP_001136389.1| fibrinogen beta chain [Bos taurus].
Length = 495
Score = 500 bits (1287), Expect(2) = e-144
Identities = 257/422 (60%), Positives = 299/422 (70%), Gaps = 4/422 (0%)
Frame = +2
Query: 59 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 238
M+S +F+K K MK C FI++AQ DYDE +D RPKV + ARGHRPYDK++EEA
Sbjct: 1 MISCNFEKFKTMKHLLLLLFCAFIVQAQFPTDYDEGQDDRPKVGLGARGHRPYDKKKEEA 60
Query: 239 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 418
PSLRPV PPIS GGY+ RPA +GQKKVERKPPDA GCLHADPDLGVLCPTGC+LQDTL
Sbjct: 61 PSLRPVPPPISGGGYRARPATATVGQKKVERKPPDADGCLHADPDLGVLCPTGCKLQDTL 120
Query: 419 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 598
++QERPI+ SIE+L TFQY+TLLK +WK RQ Q +DNENV+NE+SS L
Sbjct: 121 VRQERPIRKSIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDNENVVNEYSSHL 180
Query: 599 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 778
EKHQLYIDETV +NIPT LRVLR+ILENLRSKIQKLESDV QMEYCRTPCTVTCNIPVV
Sbjct: 181 EKHQLYIDETVKNNIPTKLRVLRSILENLRSKIQKLESDVSTQMEYCRTPCTVTCNIPVV 240
Query: 779 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 958
SGKECEEIIRNGGETSEMYLIQP DS +PYRVYCDMKTE+GGWTVIQNRQDGSVDFGRKW
Sbjct: 241 SGKECEEIIRNGGETSEMYLIQPEDSSKPYRVYCDMKTEKGGWTVIQNRQDGSVDFGRKW 300
Query: 959 DPYKQGIWKYCNQCKWEKNI-VAYQVSIGLEMIKLASLPGWDPQSF---*SKWRTGKEAR 1126
DPYKQG + +K V + +G + +++ L P W+ K
Sbjct: 301 DPYKQGFGNIATNAEGKKYCGVPGEYWLGND--RISQLTNMGPTKLLIEMEDWKGDKVTA 358
Query: 1127 *RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRD 1306
+ K + S+ T + + + RTM IHNSMFFSTY+RD
Sbjct: 359 LYEGFTVQNEANKYQLSVSKYKGTAGNALIEGASQLVG---ENRTMTIHNSMFFSTYDRD 415
Query: 1307 NE 1312
N+
Sbjct: 416 ND 417
Score = 33.1 bits (74), Expect(2) = e-144
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GWKTTDPRKQCS
Sbjct: 417 DGWKTTDPRKQCS 429
>ref|NP_001039562.1| fibroleukin precursor [Bos taurus].
Length = 441
Score = 75.1 bits (183), Expect(3) = 1e-27
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Frame = +2
Query: 557 RDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEY 736
R+ E +N+ SS+L+ + ID NL + I + + SK+ L V +
Sbjct: 131 RELEGEVNKLSSDLKNAKEEIDVLQGRLEKLNLVNMNNIEQYVDSKVANLTFVVNSLDGK 190
Query: 737 CRTPCT---VTCNIPVVSG---KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTER 898
C + C ++PV K+C E G +SE+Y + P + V+CDM+T
Sbjct: 191 CSSKCPRQEQIQSLPVQQHLIYKDCSEYYTIGKRSSELYRVTPEPRNSSFEVFCDMETMA 250
Query: 899 GGWTVIQNRQDGSVDFGRKWDPYKQG 976
GGWTV+Q R DGS +F R W YK G
Sbjct: 251 GGWTVLQARVDGSTNFTRTWQDYKVG 276
Score = 65.1 bits (157), Expect(3) = 1e-27
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
E+WLGNDKI LT+ L I++ED+ G K+ A+Y+ F V NE KY++ + Y GTAG
Sbjct: 283 EFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFLKYRLHIGNYNGTAG 342
Query: 1213 NAL 1221
+AL
Sbjct: 343 DAL 345
Score = 22.3 bits (46), Expect(3) = 1e-27
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNER 1315
H+ FF+T +RDN+R
Sbjct: 353 HDLKFFTTPDRDNDR 367
>ref|NP_776336.1| fibrinogen gamma-B chain precursor [Bos taurus].
Length = 444
Score = 94.4 bits (233), Expect(2) = 4e-27
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 1/209 (0%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + + L + + ++
Sbjct: 32 CCILDERFGSYCPTTCGIADFLNNYQTSVDKDLRTLEGILYQVENKTSEARELVKAIQIS 91
Query: 533 WKDRQKQRRDN-ENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLE 709
+ Q + +N E+ S +E+ Y ET+ S + +R L+ + + KI L
Sbjct: 92 YNPDQPSKPNNIESATKNSKSMMEEIMKY--ETLISTHESTIRFLQEVYNSNSQKIVNLR 149
Query: 710 SDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMK 889
V+ C+ PC T I V+G++C+++ G + S +Y I+P + + + VYC++
Sbjct: 150 DKVVQLEANCQEPCQDTVKIHDVTGRDCQDVANKGAKESGLYFIRPLKA-KQFLVYCEID 208
Query: 890 TERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV Q R DGS+DF + W YK+G
Sbjct: 209 GSGNGWTVFQKRLDGSLDFKKNWIQYKEG 237
Score = 46.6 bits (109), Expect(2) = 4e-27
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI ++ P L I++EDW G A Y F V E +KY+++ + + G
Sbjct: 250 EFWLGNEKIHLISTQSSIPYVLRIQLEDWNGRTSTADYASFKVTGENDKYRLTYAYFIGG 309
Query: 1204 TAGNA 1218
AG+A
Sbjct: 310 DAGDA 314
>ref|NP_001068894.1| angiopoietin-related protein 1 precursor [Bos taurus].
Length = 491
Score = 66.2 bits (160), Expect(2) = 8e-24
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C+ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+F R W+
Sbjct: 278 KDCQHAKDAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWEN 337
Query: 965 YKQG 976
YK+G
Sbjct: 338 YKKG 341
Score = 63.5 bits (153), Expect(2) = 8e-24
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ Y++ L
Sbjct: 340 KGFGNIDGEYWLGLENIYLLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRL 399
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 400 GTYQGNAGDSMM 411
>ref|NP_001014909.1| angiopoietin-related protein 7 precursor [Bos taurus].
Length = 344
Score = 67.8 bits (164), Expect(3) = 6e-23
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +1
Query: 1000 QMGKKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQ 1179
Q + + I G++WLGND I +L+R PT+L +EM+DWEG A Y F + NE N Y+
Sbjct: 188 QYKQGFGSIRGDFWLGNDHIHRLSRR-PTRLRVEMQDWEGNMRYAEYSHFVLGNELNSYR 246
Query: 1180 ISLSKYKGTAGNALL 1224
+ L Y G GN L
Sbjct: 247 LFLGNYSGDVGNDAL 261
Score = 58.2 bits (139), Expect(3) = 6e-23
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 788 ECEEIIRNGGETSEMYLIQPSDSI--EPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWD 961
+C + + S +Y + P D + V+CDM+T GGWT+IQ R+ G V F R W
Sbjct: 128 DCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWK 187
Query: 962 PYKQG 976
YKQG
Sbjct: 188 QYKQG 192
Score = 20.8 bits (42), Expect(3) = 6e-23
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNE 1312
HN+ FST ++DN+
Sbjct: 264 HNNTAFSTKDKDND 277
>ref|NP_001070265.1| angiopoietin-1 precursor [Bos taurus].
Length = 497
Score = 66.2 bits (160), Expect(2) = 5e-22
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C ++ + G S +Y I ++ EP +V+C+M GGWTVIQ+R+DGS+DF R W
Sbjct: 283 RDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDGSLDFQRGWKE 342
Query: 965 YKQG 976
YK G
Sbjct: 343 YKMG 346
Score = 57.4 bits (137), Expect(2) = 5e-22
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ I +T L IE+ DWEG + + Y+ F + NE Y++ L + GTA
Sbjct: 352 GEYWLGNEFIFAITSQRQYTLRIELLDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTA 411
Query: 1210 G---NALLEGA 1233
G + +L GA
Sbjct: 412 GKQSSLILHGA 422
>ref|XP_002707737.1| PREDICTED: microfibrillar-associated protein 4-like [Bos taurus].
Length = 625
Score = 69.7 bits (169), Expect(3) = 2e-21
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C +++ +G + +Y + P+ ++VYCDM+T+ GGWTV Q R+DGSV+F R W+
Sbjct: 242 RDCLDVLLSGQQEDGVYSVFPTHDPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEA 301
Query: 965 YKQGIWK 985
Y+ G K
Sbjct: 302 YRDGFGK 308
Score = 49.7 bits (117), Expect(3) = 2e-21
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +1
Query: 1024 IPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEG-----FTVQNEANKYQISL 1188
+ GE+WLG +I LT +L +++ED++ G A Y F+V E + Y +++
Sbjct: 309 LTGEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDPEEDGYPLTV 368
Query: 1189 SKYKGTAGNALLE 1227
+ Y GTAG++LL+
Sbjct: 369 ADYSGTAGDSLLK 381
Score = 22.3 bits (46), Expect(3) = 2e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENH 1327
H+ M F+T +RD++ EN+
Sbjct: 382 HSGMKFTTKDRDSDHSENN 400
>ref|NP_001010996.1| ficolin-2 precursor [Bos taurus].
Length = 329
Score = 62.8 bits (151), Expect(2) = 3e-21
Identities = 31/64 (48%), Positives = 37/64 (57%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
+ C E++ G S + I D P V CDM T+ GGWTV Q R+DGSVDF R W
Sbjct: 119 RTCTELLTRGHFLSGWHTIYLPDC-RPLTVLCDMDTDGGGWTVFQRRKDGSVDFFRTWTA 177
Query: 965 YKQG 976
YKQG
Sbjct: 178 YKQG 181
Score = 58.5 bits (140), Expect(2) = 3e-21
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KGT 1206
GE+WLGND I LT G ++L +++ D+EG A Y+ F + +EA KY++ L + +G
Sbjct: 187 GEFWLGNDNIHALTAQGTSELRVDLMDFEGNHRFAKYQSFRMADEAEKYKLVLGAFVEGN 246
Query: 1207 AGNALLEGASQLVG--ENPNHEHP 1272
AG++L + + + N E P
Sbjct: 247 AGDSLTDHGNHFFSTKDRDNDESP 270
>ref|XP_610224.4| PREDICTED: microfibrillar-associated protein 4-like [Bos taurus].
Length = 519
Score = 69.7 bits (169), Expect(2) = 9e-19
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C +++ +G + +Y + P+ ++VYCDM+T+ GGWTV Q R+DGSV+F R W+
Sbjct: 242 RDCLDVLLSGQQEDGVYSVFPTHDPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEA 301
Query: 965 YKQGIWK 985
Y+ G K
Sbjct: 302 YRDGFGK 308
Score = 43.1 bits (100), Expect(2) = 9e-19
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 1024 IPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEG-----FTVQNEANKYQISL 1188
+ GE+WLG +I LT +L +++ED++ G A Y F+V E + Y +++
Sbjct: 309 LTGEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDPEEDGYPLTV 368
Query: 1189 SKYKGTA 1209
+ Y GTA
Sbjct: 369 ADYSGTA 375
>ref|NP_001192770.1| tenascin-N [Bos taurus].
Length = 1296
Score = 57.8 bits (138), Expect(2) = 2e-17
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 686 RSKIQKLESDV-----LAQMEYCRTPCTVTCNIPVVSGK-----ECEEIIRNGGETSEMY 835
R ++Q LE V L + R +V+ N+ V + +C ++ +N S +Y
Sbjct: 1022 RFELQGLEQGVTLPVSLVAFKGDRRSRSVSTNLSTVGARFPHPSDCSQVQQNSNAASGLY 1081
Query: 836 LIQ-PSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
I D+ +VYCDM T+ GGW V Q R G +DF ++W Y +G
Sbjct: 1082 TIYLHGDASRSLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRTYVEG 1129
Score = 50.8 bits (120), Expect(2) = 2e-17
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEME-DWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
E+WLG DK+ LT PT+ + ++ A+Y+ F V + +Y++++ KY+GTA
Sbjct: 1136 EFWLGLDKLHNLTMGTPTRYEVRVDLQTANESAYAVYDSFQVASSKERYRLTVGKYRGTA 1195
Query: 1210 GNAL 1221
G+AL
Sbjct: 1196 GDAL 1199
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,715,853
Number of extensions: 1368364
Number of successful extensions: 3942
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3929
Number of HSP's successfully gapped: 56
Length of query: 454
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,174,046
Effective search space: 4932568008
Effective search space used: 4932568008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain pre... 478 e-136
Alignment gi|XP_532696.2| PREDICTED: similar to Fibrinogen beta chain pre... 473 e-135
Alignment gi|XP_867836.1| PREDICTED: similar to Fibrinogen beta chain pre... 135 7e-34
Alignment gi|XP_853752.1| PREDICTED: similar to Fibrinogen gamma chain pr... 94 3e-29
Alignment gi|XP_532698.2| PREDICTED: similar to fibrinogen, gamma chain i... 94 3e-29
Alignment gi|XP_867873.1| PREDICTED: similar to fibrinogen, gamma chain i... 94 4e-29
Alignment gi|XP_533109.2| PREDICTED: similar to Fibroleukin precursor (Fi... 72 1e-26
Alignment gi|XP_860886.1| PREDICTED: similar to angiopoietin-like 1 precu... 69 2e-24
Alignment gi|XP_850177.1| PREDICTED: similar to angiopoietin-like 1 precu... 67 9e-24
Alignment gi|XP_860919.1| PREDICTED: similar to angiopoietin-like 1 precu... 67 9e-24
>ref|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain precursor isoform 2
[Canis familiaris].
Length = 488
Score = 478 bits (1229), Expect(2) = e-136
Identities = 261/429 (60%), Positives = 292/429 (68%), Gaps = 11/429 (2%)
Frame = +2
Query: 59 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 238
MVSW+F+ K MK CVFI+K+QA YD+ VDARGHRP DK+REEA
Sbjct: 1 MVSWNFKNFKSMKNLLLLLLCVFIVKSQAHY-YDDTST------VDARGHRPLDKKREEA 53
Query: 239 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 418
PSLRP PPIS GGY+ RP K QKK+ERK PDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 54 PSLRPAPPPISGGGYRARPVKPVASQKKLERKAPDAGGCLHADPDLGVLCPTGCQLQDTL 113
Query: 419 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 598
+KQERPI+ SI+ELN TFQY+TLLK +WK+RQKQ RDNEN INE+SSEL
Sbjct: 114 VKQERPIRKSIDELNNNVESVSQSSSSTFQYITLLKDMWKNRQKQIRDNENAINEYSSEL 173
Query: 599 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 778
EKHQLYI+ETV SNIPTNLRVLRAILENLRSKIQKLESDV AQMEYCRTPCTV+CNIPVV
Sbjct: 174 EKHQLYIEETVTSNIPTNLRVLRAILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVV 233
Query: 779 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 958
SGKECEEIIRNGGETSEMYLIQP SI PYRVYCDM T+ GGWTVIQNRQDGSVDFGR W
Sbjct: 234 SGKECEEIIRNGGETSEMYLIQPHSSITPYRVYCDMTTDSGGWTVIQNRQDGSVDFGRTW 293
Query: 959 DPYKQGIW---------KYCNQC--KWEKNIVAYQVSIGLEMIKLASLPGWDPQSF*SKW 1105
DPYKQG KYC W N Q++ L + W K
Sbjct: 294 DPYKQGFGNIATSADGKKYCGLPGEYWLGNDKISQLTNMGPTELLIEMEDWKGDKV--KA 351
Query: 1106 RTGKEAR*RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMF 1285
G ++ K L +K T N + A+ + E +TM IHN M+
Sbjct: 352 LYGGFTMQNEANKYQLSVSKYKGTA---GNALIEGASQLFGE-------NQTMTIHNGMY 401
Query: 1286 FSTYNRDNE 1312
FSTY+RDN+
Sbjct: 402 FSTYDRDND 410
Score = 27.7 bits (60), Expect(2) = e-136
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW TTDP+KQC+
Sbjct: 410 DGWITTDPKKQCA 422
>ref|XP_532696.2| PREDICTED: similar to Fibrinogen beta chain precursor isoform 1
[Canis familiaris].
Length = 484
Score = 473 bits (1216), Expect(2) = e-135
Identities = 257/418 (61%), Positives = 286/418 (68%), Gaps = 11/418 (2%)
Frame = +2
Query: 92 MKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEAPSLRPVAPPIS 271
MK CVFI+K+QA D DE+ R VDARGHRP DK+REEAPSLRP PPIS
Sbjct: 1 MKNLLLLLLCVFIVKSQAHYYDDTDEEERIVSTVDARGHRPLDKKREEAPSLRPAPPPIS 60
Query: 272 AGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTLLKQERPIKTSI 451
GGY+ RP K QKK+ERK PDAGGCLHADPDLGVLCPTGCQLQDTL+KQERPI+ SI
Sbjct: 61 GGGYRARPVKPVASQKKLERKAPDAGGCLHADPDLGVLCPTGCQLQDTLVKQERPIRKSI 120
Query: 452 EELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSELEKHQLYIDETV 631
+ELN TFQY+TLLK +WK+RQKQ RDNEN INE+SSELEKHQLYI+ETV
Sbjct: 121 DELNNNVESVSQSSSSTFQYITLLKDMWKNRQKQIRDNENAINEYSSELEKHQLYIEETV 180
Query: 632 NSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRN 811
SNIPTNLRVLRAILENLRSKIQKLESDV AQMEYCRTPCTV+CNIPVVSGKECEEIIRN
Sbjct: 181 TSNIPTNLRVLRAILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRN 240
Query: 812 GGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQGIW--- 982
GGETSEMYLIQP SI PYRVYCDM T+ GGWTVIQNRQDGSVDFGR WDPYKQG
Sbjct: 241 GGETSEMYLIQPHSSITPYRVYCDMTTDSGGWTVIQNRQDGSVDFGRTWDPYKQGFGNIA 300
Query: 983 ------KYCNQC--KWEKNIVAYQVSIGLEMIKLASLPGWDPQSF*SKWRTGKEAR*RQS 1138
KYC W N Q++ L + W K G ++
Sbjct: 301 TSADGKKYCGLPGEYWLGNDKISQLTNMGPTELLIEMEDWKGDKV--KALYGGFTMQNEA 358
Query: 1139 TKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRDNE 1312
K L +K T N + A+ + E +TM IHN M+FSTY+RDN+
Sbjct: 359 NKYQLSVSKYKGTA---GNALIEGASQLFGE-------NQTMTIHNGMYFSTYDRDND 406
Score = 27.7 bits (60), Expect(2) = e-135
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW TTDP+KQC+
Sbjct: 406 DGWITTDPKKQCA 418
>ref|XP_867836.1| PREDICTED: similar to Fibrinogen beta chain precursor isoform 3
[Canis familiaris].
Length = 227
Score = 135 bits (341), Expect(2) = 7e-34
Identities = 63/74 (85%), Positives = 70/74 (94%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
EYWLGNDKISQLT MGPT+LLIEMEDW+G KVKA+Y GFT+QNEANKYQ+S+SKYKGTAG
Sbjct: 57 EYWLGNDKISQLTNMGPTELLIEMEDWKGDKVKALYGGFTMQNEANKYQLSVSKYKGTAG 116
Query: 1213 NALLEGASQLVGEN 1254
NAL+EGASQL GEN
Sbjct: 117 NALIEGASQLFGEN 130
Score = 27.7 bits (60), Expect(2) = 7e-34
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW TTDP+KQC+
Sbjct: 149 DGWITTDPKKQCA 161
Score = 110 bits (276), Expect = 2e-24
Identities = 69/161 (42%), Positives = 83/161 (51%)
Frame = +2
Query: 830 MYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQGIWKYCNQCKWE 1009
MYLIQP SI PYRVYCDM T+ GGWTVIQNRQDGSVDFGR WDPYKQG W
Sbjct: 1 MYLIQPHSSITPYRVYCDMTTDSGGWTVIQNRQDGSVDFGRTWDPYKQGFGNIATSEYWL 60
Query: 1010 KNIVAYQVSIGLEMIKLASLPGWDPQSF*SKWRTGKEAR*RQSTKDSLCRTKPINTRSR* 1189
N Q++ L + W K G ++ K L +K T
Sbjct: 61 GNDKISQLTNMGPTELLIEMEDWKGDKV--KALYGGFTMQNEANKYQLSVSKYKGTA--- 115
Query: 1190 ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRDNE 1312
N + A+ + E +TM IHN M+FSTY+RDN+
Sbjct: 116 GNALIEGASQLFGE-------NQTMTIHNGMYFSTYDRDND 149
>ref|XP_853752.1| PREDICTED: similar to Fibrinogen gamma chain precursor isoform 2
[Canis familiaris].
Length = 445
Score = 94.0 bits (232), Expect(3) = 3e-29
Identities = 53/208 (25%), Positives = 95/208 (45%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + ++ L + + ++
Sbjct: 34 CCILDERFGSYCPTTCGIADFLSTYQTGVDNDLQALEDLLRRIENKTAEAKEVIKSIQIT 93
Query: 533 WKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLES 712
+ + + + + S ++ + + + V S+ +N+R L I + KI L+
Sbjct: 94 YNPDEPPKPNRVVGATKDSKKMMEEIIKYEALVGSH-ESNIRFLLEIYNSNSQKINNLKQ 152
Query: 713 DVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKT 892
V C+ PC T +I +GK+C++I G + S +Y I+P + + + VYC++
Sbjct: 153 KVAQLEAKCQEPCKDTVHIHDTTGKDCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDG 212
Query: 893 ERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV+Q R DGS+DF + W YK+G
Sbjct: 213 SGNGWTVLQKRLDGSLDFKKNWIQYKEG 240
Score = 48.1 bits (113), Expect(3) = 3e-29
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI ++ P L I++EDW G A Y F V EA+KY+++ + Y G
Sbjct: 251 EFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEADKYRMTYAYYIGG 310
Query: 1204 TAGNA 1218
AG+A
Sbjct: 311 DAGDA 315
Score = 26.2 bits (56), Expect(3) = 3e-29
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENHRSQK 1339
HN M FST++ DN++ E + +++
Sbjct: 333 HNGMQFSTWDNDNDKYEGNCAEQ 355
>ref|XP_532698.2| PREDICTED: similar to fibrinogen, gamma chain isoform gamma-A
precursor isoform 1 [Canis familiaris].
Length = 437
Score = 94.0 bits (232), Expect(3) = 3e-29
Identities = 53/208 (25%), Positives = 95/208 (45%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + ++ L + + ++
Sbjct: 34 CCILDERFGSYCPTTCGIADFLSTYQTGVDNDLQALEDLLRRIENKTAEAKEVIKSIQIT 93
Query: 533 WKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLES 712
+ + + + + S ++ + + + V S+ +N+R L I + KI L+
Sbjct: 94 YNPDEPPKPNRVVGATKDSKKMMEEIIKYEALVGSH-ESNIRFLLEIYNSNSQKINNLKQ 152
Query: 713 DVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKT 892
V C+ PC T +I +GK+C++I G + S +Y I+P + + + VYC++
Sbjct: 153 KVAQLEAKCQEPCKDTVHIHDTTGKDCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDG 212
Query: 893 ERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV+Q R DGS+DF + W YK+G
Sbjct: 213 SGNGWTVLQKRLDGSLDFKKNWIQYKEG 240
Score = 48.1 bits (113), Expect(3) = 3e-29
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI ++ P L I++EDW G A Y F V EA+KY+++ + Y G
Sbjct: 251 EFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEADKYRMTYAYYIGG 310
Query: 1204 TAGNA 1218
AG+A
Sbjct: 311 DAGDA 315
Score = 26.2 bits (56), Expect(3) = 3e-29
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENHRSQK 1339
HN M FST++ DN++ E + +++
Sbjct: 333 HNGMQFSTWDNDNDKYEGNCAEQ 355
>ref|XP_867873.1| PREDICTED: similar to fibrinogen, gamma chain isoform gamma-A
precursor isoform 4 [Canis familiaris].
Length = 444
Score = 93.6 bits (231), Expect(3) = 4e-29
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 6/214 (2%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + ++ L + + ++
Sbjct: 34 CCILDERFGSYCPTTCGIADFLSTYQTGVDNDLQALEDLLRRIENKTAEAKEVIKSIQIT 93
Query: 533 W------KDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSK 694
+ K +KQ + V S+ ++ E + + +N+R L I + K
Sbjct: 94 YNPDEPPKPSEKQNTADRVVGATKDSKKMMEEIIKYEALVGSHESNIRFLLEIYNSNSQK 153
Query: 695 IQKLESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRV 874
I L+ V C+ PC T +I +GK+C++I G + S +Y I+P + + + V
Sbjct: 154 INNLKQKVAQLEAKCQEPCKDTVHIHDTTGKDCQDIANKGAKESGLYFIKPLKAKQQFLV 213
Query: 875 YCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
YC++ GWTV+Q R DGS+DF + W YK+G
Sbjct: 214 YCEIDGSGNGWTVLQKRLDGSLDFKKNWIQYKEG 247
Score = 48.1 bits (113), Expect(3) = 4e-29
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI ++ P L I++EDW G A Y F V EA+KY+++ + Y G
Sbjct: 258 EFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEADKYRMTYAYYIGG 317
Query: 1204 TAGNA 1218
AG+A
Sbjct: 318 DAGDA 322
Score = 26.2 bits (56), Expect(3) = 4e-29
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENHRSQK 1339
HN M FST++ DN++ E + +++
Sbjct: 340 HNGMQFSTWDNDNDKYEGNCAEQ 362
>ref|XP_533109.2| PREDICTED: similar to Fibroleukin precursor (Fibrinogen-like
protein 2) (pT49) [Canis familiaris].
Length = 441
Score = 72.0 bits (175), Expect(3) = 1e-26
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = +2
Query: 557 RDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEY 736
R+ E+ +N+ S++L+ + ID +L + I + SK+ L S V +
Sbjct: 132 RELESEVNKLSADLKDAKEEIDVLHGRLEELSLVNMNNIENYVDSKVANLTSVVNSLDGK 191
Query: 737 CRTPC-----TVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERG 901
C + C T + + + K+C + G +SE Y + P + V+CDM+T G
Sbjct: 192 CSSKCPSQEHTQSRPVQHLIYKDCSDYYTIGKRSSETYRVTPDPKNSSFEVFCDMETMGG 251
Query: 902 GWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV+Q R DGS +F R W YK G
Sbjct: 252 GWTVLQARLDGSTNFTRTWQDYKVG 276
Score = 65.5 bits (158), Expect(3) = 1e-26
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
E+WLGNDKI LT+ L I++ED+ G K+ A+Y+ F V NE KY++ + Y GTAG
Sbjct: 283 EFWLGNDKIHLLTKSKDMILRIDLEDFNGVKLYALYDQFYVANEFLKYRLHIGNYNGTAG 342
Query: 1213 NAL 1221
+AL
Sbjct: 343 DAL 345
Score = 22.3 bits (46), Expect(3) = 1e-26
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNER 1315
H+ FF+T +RDN+R
Sbjct: 353 HDLKFFTTPDRDNDR 367
>ref|XP_860886.1| PREDICTED: similar to angiopoietin-like 1 precursor isoform 3
[Canis familiaris].
Length = 494
Score = 69.3 bits (168), Expect(2) = 2e-24
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 764 NIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVD 943
N+P K+C+ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+
Sbjct: 274 NVPDRPFKDCQHAKEAGHSVSGIYMIKPENSNGPIQLWCENSLDPGGWTVIQKRTDGSVN 333
Query: 944 FGRKWDPYKQG 976
F R W+ YK+G
Sbjct: 334 FFRNWENYKKG 344
Score = 62.8 bits (151), Expect(2) = 2e-24
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ +++ L
Sbjct: 343 KGFGNIDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFFRLRL 402
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 403 GTYQGNAGDSMM 414
>ref|XP_850177.1| PREDICTED: similar to angiopoietin-like 1 precursor isoform 2
[Canis familiaris].
Length = 502
Score = 67.0 bits (162), Expect(2) = 9e-24
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C+ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+F R W+
Sbjct: 289 KDCQHAKEAGHSVSGIYMIKPENSNGPIQLWCENSLDPGGWTVIQKRTDGSVNFFRNWEN 348
Query: 965 YKQG 976
YK+G
Sbjct: 349 YKKG 352
Score = 62.8 bits (151), Expect(2) = 9e-24
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ +++ L
Sbjct: 351 KGFGNIDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFFRLRL 410
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 411 GTYQGNAGDSMM 422
>ref|XP_860919.1| PREDICTED: similar to angiopoietin-like 1 precursor isoform 4
[Canis familiaris].
Length = 495
Score = 67.0 bits (162), Expect(2) = 9e-24
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C+ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+F R W+
Sbjct: 282 KDCQHAKEAGHSVSGIYMIKPENSNGPIQLWCENSLDPGGWTVIQKRTDGSVNFFRNWEN 341
Query: 965 YKQG 976
YK+G
Sbjct: 342 YKKG 345
Score = 62.8 bits (151), Expect(2) = 9e-24
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ +++ L
Sbjct: 344 KGFGNIDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFFRLRL 403
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 404 GTYQGNAGDSMM 415
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,116,162
Number of extensions: 1415874
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4178
Number of HSP's successfully gapped: 85
Length of query: 454
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 348
Effective length of database: 15,340,888
Effective search space: 5338629024
Effective search space used: 5338629024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005132.2| fibrinogen beta chain isoform 1 preproprotein [... 483 e-138
Alignment gi|NP_001171670.1| fibrinogen beta chain isoform 2 preproprotei... 330 3e-92
Alignment gi|NP_068656.2| fibrinogen gamma chain isoform gamma-B precurso... 95 8e-28
Alignment gi|NP_000500.2| fibrinogen gamma chain isoform gamma-A precurso... 95 8e-28
Alignment gi|NP_001112359.1| angiopoietin-2 isoform b precursor [Homo sap... 78 2e-26
Alignment gi|NP_001138.1| angiopoietin-2 isoform a precursor [Homo sapien... 76 7e-26
Alignment gi|NP_001112360.1| angiopoietin-2 isoform c precursor [Homo sap... 76 7e-26
Alignment gi|NP_006673.1| fibroleukin precursor [Homo sapiens]. 70 4e-25
Alignment gi|NP_004664.1| angiopoietin-related protein 1 precursor [Homo ... 68 2e-24
Alignment gi|NP_066969.1| angiopoietin-related protein 7 precursor [Homo ... 68 5e-24
>ref|NP_005132.2| fibrinogen beta chain isoform 1 preproprotein [Homo sapiens].
Length = 491
Score = 483 bits (1244), Expect(2) = e-138
Identities = 252/420 (60%), Positives = 284/420 (67%)
Frame = +2
Query: 53 QRMVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRRE 232
+RMVSW F KLK MK CVF++K+Q D +E ARGHRP DK+RE
Sbjct: 2 KRMVSWSFHKLKTMKHLLLLLLCVFLVKSQGVNDNEEG-------FFSARGHRPLDKKRE 54
Query: 233 EAPSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQD 412
EAPSLRP PPIS GGY+ RPAK A QKKVERK PDAGGCLHADPDLGVLCPTGCQLQ+
Sbjct: 55 EAPSLRPAPPPISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLCPTGCQLQE 114
Query: 413 TLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSS 592
LL+QERPI+ S++ELN +FQYM LLK LW+ RQKQ +DNENV+NE+SS
Sbjct: 115 ALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSS 174
Query: 593 ELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIP 772
ELEKHQLYIDETVNSNIPTNLRVLR+ILENLRSKIQKLESDV AQMEYCRTPCTV+CNIP
Sbjct: 175 ELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIP 234
Query: 773 VVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGR 952
VVSGKECEEIIR GGETSEMYLIQP S++PYRVYCDM TE GGWTVIQNRQDGSVDFGR
Sbjct: 235 VVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGR 294
Query: 953 KWDPYKQGIWKYCNQCKWEKNIVAYQVSIGLEMIKLASLPGWDPQSF*SKWRTGKEAR*R 1132
KWDPYKQG KN L K++ L P + K + +
Sbjct: 295 KWDPYKQGFGNVATNTD-GKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVK 353
Query: 1133 QSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRDNE 1312
+ + + R + RTM IHN MFFSTY+RDN+
Sbjct: 354 AHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDND 413
Score = 28.9 bits (63), Expect(2) = e-138
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW T+DPRKQCS
Sbjct: 413 DGWLTSDPRKQCS 425
>ref|NP_001171670.1| fibrinogen beta chain isoform 2 preproprotein [Homo sapiens].
Length = 432
Score = 330 bits (845), Expect(2) = 3e-92
Identities = 175/308 (56%), Positives = 202/308 (65%)
Frame = +2
Query: 389 PTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNE 568
P + ++ LL+QERPI+ S++ELN +FQYM LLK LW+ RQKQ +DNE
Sbjct: 48 PLDKKREEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNE 107
Query: 569 NVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTP 748
NV+NE+SSELEKHQLYIDETVNSNIPTNLRVLR+ILENLRSKIQKLESDV AQMEYCRTP
Sbjct: 108 NVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTP 167
Query: 749 CTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQ 928
CTV+CNIPVVSGKECEEIIR GGETSEMYLIQP S++PYRVYCDM TE GGWTVIQNRQ
Sbjct: 168 CTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQ 227
Query: 929 DGSVDFGRKWDPYKQGIWKYCNQCKWEKNIVAYQVSIGLEMIKLASLPGWDPQSF*SKWR 1108
DGSVDFGRKWDPYKQG KN L K++ L P +
Sbjct: 228 DGSVDFGRKWDPYKQGFGNVATNTD-GKNYCGLPGEYWLGNDKISQLTRMGPTELLIEME 286
Query: 1109 TGKEAR*RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFF 1288
K + + + + + R + RTM IHN MFF
Sbjct: 287 DWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFF 346
Query: 1289 STYNRDNE 1312
STY+RDN+
Sbjct: 347 STYDRDND 354
Score = 28.9 bits (63), Expect(2) = 3e-92
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW T+DPRKQCS
Sbjct: 354 DGWLTSDPRKQCS 366
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 53 QRMVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRRE 232
+RMVSW F KLK MK CVF++K+Q D +E ARGHRP DK+RE
Sbjct: 2 KRMVSWSFHKLKTMKHLLLLLLCVFLVKSQGVNDNEEG-------FFSARGHRPLDKKRE 54
Query: 233 EA 238
EA
Sbjct: 55 EA 56
>ref|NP_068656.2| fibrinogen gamma chain isoform gamma-B precursor [Homo sapiens].
Length = 453
Score = 95.1 bits (235), Expect(2) = 8e-28
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 2/210 (0%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + ++ L T + L+K +
Sbjct: 34 CCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENK---TSEVKQLIKAI 90
Query: 533 WKDRQKQRRDNENVINEFSSELEK--HQLYIDETVNSNIPTNLRVLRAILENLRSKIQKL 706
N+I+ + + K ++ E +++R L+ I + KI L
Sbjct: 91 QLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNL 150
Query: 707 ESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDM 886
+ V C+ PC T I ++GK+C++I G + S +Y I+P + + + VYC++
Sbjct: 151 KEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEI 210
Query: 887 KTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV Q R DGSVDF + W YK+G
Sbjct: 211 DGSGNGWTVFQKRLDGSVDFKKNWIQYKEG 240
Score = 48.1 bits (113), Expect(2) = 8e-28
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYK-G 1203
E+WLGN+KI ++ P L +E+EDW G A Y F V EA+KY+++ + + G
Sbjct: 251 EFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGG 310
Query: 1204 TAGNA 1218
AG+A
Sbjct: 311 DAGDA 315
>ref|NP_000500.2| fibrinogen gamma chain isoform gamma-A precursor [Homo sapiens].
Length = 437
Score = 95.1 bits (235), Expect(2) = 8e-28
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 2/210 (0%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + ++ L T + L+K +
Sbjct: 34 CCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENK---TSEVKQLIKAI 90
Query: 533 WKDRQKQRRDNENVINEFSSELEK--HQLYIDETVNSNIPTNLRVLRAILENLRSKIQKL 706
N+I+ + + K ++ E +++R L+ I + KI L
Sbjct: 91 QLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNL 150
Query: 707 ESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDM 886
+ V C+ PC T I ++GK+C++I G + S +Y I+P + + + VYC++
Sbjct: 151 KEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEI 210
Query: 887 KTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV Q R DGSVDF + W YK+G
Sbjct: 211 DGSGNGWTVFQKRLDGSVDFKKNWIQYKEG 240
Score = 48.1 bits (113), Expect(2) = 8e-28
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYK-G 1203
E+WLGN+KI ++ P L +E+EDW G A Y F V EA+KY+++ + + G
Sbjct: 251 EFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGG 310
Query: 1204 TAGNA 1218
AG+A
Sbjct: 311 DAGDA 315
>ref|NP_001112359.1| angiopoietin-2 isoform b precursor [Homo sapiens].
Length = 495
Score = 78.2 bits (191), Expect(2) = 2e-26
Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
Frame = +2
Query: 524 KRLWKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLR-------VLRAILEN 682
K + +++ +++++I S + EK QL + + ++I L V ++L+
Sbjct: 187 KNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQNSIIEELEKKIVTATVNNSVLQK 246
Query: 683 LRSKIQKLESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIE 862
+ + + +++L M + +S ++C E+ ++G T+ +Y + +S E
Sbjct: 247 QQHDLMETVNNLLTMMSTSNSKDPTVAKEEQISFRDCAEVFKSGHTTNGIYTLTFPNSTE 306
Query: 863 PYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
+ YCDM+ GGWT+IQ R+DGSVDF R W YK G
Sbjct: 307 EIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVG 344
Score = 60.5 bits (145), Expect(2) = 2e-26
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ +SQLT L I ++DWEG + ++YE F + +E Y+I L GTA
Sbjct: 350 GEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTA 409
Query: 1210 G 1212
G
Sbjct: 410 G 410
>ref|NP_001138.1| angiopoietin-2 isoform a precursor [Homo sapiens].
Length = 496
Score = 76.3 bits (186), Expect(2) = 7e-26
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Frame = +2
Query: 524 KRLWKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNL--RVLRAILENLRSKI 697
K + +++ +++++I S + EK QL + + ++I L +++ A + N S +
Sbjct: 187 KNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQNSIIEELEKKIVTATVNN--SVL 244
Query: 698 QKLESDVLAQMEYCRTPCTVTCNIP--------VVSGKECEEIIRNGGETSEMYLIQPSD 853
QK + D++ + T + + + +S ++C E+ ++G T+ +Y + +
Sbjct: 245 QKQQHDLMETVNNLLTMMSTSNSAKDPTVAKEEQISFRDCAEVFKSGHTTNGIYTLTFPN 304
Query: 854 SIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
S E + YCDM+ GGWT+IQ R+DGSVDF R W YK G
Sbjct: 305 STEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVG 345
Score = 60.5 bits (145), Expect(2) = 7e-26
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ +SQLT L I ++DWEG + ++YE F + +E Y+I L GTA
Sbjct: 351 GEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTA 410
Query: 1210 G 1212
G
Sbjct: 411 G 411
>ref|NP_001112360.1| angiopoietin-2 isoform c precursor [Homo sapiens].
Length = 444
Score = 76.3 bits (186), Expect(2) = 7e-26
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Frame = +2
Query: 524 KRLWKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNL--RVLRAILENLRSKI 697
K + +++ +++++I S + EK QL + + ++I L +++ A + N S +
Sbjct: 135 KNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQNSIIEELEKKIVTATVNN--SVL 192
Query: 698 QKLESDVLAQMEYCRTPCTVTCNIP--------VVSGKECEEIIRNGGETSEMYLIQPSD 853
QK + D++ + T + + + +S ++C E+ ++G T+ +Y + +
Sbjct: 193 QKQQHDLMETVNNLLTMMSTSNSAKDPTVAKEEQISFRDCAEVFKSGHTTNGIYTLTFPN 252
Query: 854 SIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
S E + YCDM+ GGWT+IQ R+DGSVDF R W YK G
Sbjct: 253 STEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVG 293
Score = 60.5 bits (145), Expect(2) = 7e-26
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ +SQLT L I ++DWEG + ++YE F + +E Y+I L GTA
Sbjct: 299 GEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTA 358
Query: 1210 G 1212
G
Sbjct: 359 G 359
>ref|NP_006673.1| fibroleukin precursor [Homo sapiens].
Length = 439
Score = 69.7 bits (169), Expect(3) = 4e-25
Identities = 41/134 (30%), Positives = 59/134 (44%)
Frame = +2
Query: 575 INEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCT 754
IN LEK L + + + + + L ++ +L K K S Q
Sbjct: 151 INVLHGRLEKLNLVNMNNIENYVDSKVANLTFVVNSLDGKCSKCPSQEQIQSR------- 203
Query: 755 VTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDG 934
+ + K+C + G +SE Y + P + VYCDM+T GGWTV+Q R DG
Sbjct: 204 ---PVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDG 260
Query: 935 SVDFGRKWDPYKQG 976
S +F R W YK G
Sbjct: 261 STNFTRTWQDYKAG 274
Score = 63.5 bits (153), Expect(3) = 4e-25
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
E+WLGNDKI LT+ L I++ED+ G ++ A+Y+ F V NE KY++ + Y GTAG
Sbjct: 281 EFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAG 340
Query: 1213 NAL 1221
+AL
Sbjct: 341 DAL 343
Score = 21.2 bits (43), Expect(3) = 4e-25
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNER 1315
H+ FF+T ++DN+R
Sbjct: 351 HDLKFFTTPDKDNDR 365
>ref|NP_004664.1| angiopoietin-related protein 1 precursor [Homo sapiens].
Length = 491
Score = 67.8 bits (164), Expect(2) = 2e-24
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C++ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+F R W+
Sbjct: 278 KDCQQAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWEN 337
Query: 965 YKQG 976
YK+G
Sbjct: 338 YKKG 341
Score = 64.3 bits (155), Expect(2) = 2e-24
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ Y++ L
Sbjct: 340 KGFGNIDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRL 399
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 400 GTYQGNAGDSMM 411
>ref|NP_066969.1| angiopoietin-related protein 7 precursor [Homo sapiens].
Length = 346
Score = 68.2 bits (165), Expect(3) = 5e-24
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +1
Query: 1000 QMGKKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQ 1179
Q + + I G++WLGN+ I +L+R PT+L +EMEDWEG A Y F + NE N Y+
Sbjct: 190 QYKQGFGSIRGDFWLGNEHIHRLSRQ-PTRLRVEMEDWEGNLRYAEYSHFVLGNELNSYR 248
Query: 1180 ISLSKYKGTAGNALLE 1227
+ L Y G GN L+
Sbjct: 249 LFLGNYTGNVGNDALQ 264
Score = 61.2 bits (147), Expect(3) = 5e-24
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Frame = +2
Query: 536 KDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESD 715
K+ + Q + ++++E + + E+ + + V + +N + + + L + SK ++ +
Sbjct: 50 KELKAQVANLSSLLSELNKKQERDWVSVVMQV-MELESNSKRMESRLTDAESKYSEMNNQ 108
Query: 716 V-LAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSI--EPYRVYCDM 886
+ + Q++ +T + + +C + + S +Y + P D + V+CDM
Sbjct: 109 IDIMQLQAAQTVTQTSADAIY----DCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDM 164
Query: 887 KTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
+T GGWT+IQ R+ G V F R W YKQG
Sbjct: 165 ETSGGGWTIIQRRKSGLVSFYRDWKQYKQG 194
Score = 21.2 bits (43), Expect(3) = 5e-24
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 1262 MNIHNSMFFSTYNRDNE 1312
+ HN+ FST ++DN+
Sbjct: 263 LQYHNNTAFSTKDKDND 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,307,975
Number of extensions: 1400540
Number of successful extensions: 4170
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4144
Number of HSP's successfully gapped: 97
Length of query: 454
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,802,980
Effective search space: 5151437040
Effective search space used: 5151437040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_862897.1| fibrinogen beta chain precursor [Mus musculus]. 444 e-127
Alignment gi|NP_031452.2| angiopoietin-2 precursor [Mus musculus]. 73 4e-25
Alignment gi|NP_082609.2| angiopoietin-related protein 1 precursor [Mus m... 66 6e-24
Alignment gi|NP_032039.2| fibroleukin precursor [Mus musculus]. 63 2e-23
Alignment gi|NP_033770.2| angiopoietin-1 precursor [Mus musculus]. 66 4e-22
Alignment gi|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus m... 70 1e-21
Alignment gi|NP_034320.1| ficolin-2 precursor [Mus musculus]. 62 3e-21
Alignment gi|NP_001034643.1| angiopoietin-related protein 7 precursor [Mu... 64 5e-21
Alignment gi|NP_598623.1| fibrinogen gamma chain precursor [Mus musculus]. 96 7e-20
Alignment gi|NP_660136.1| angiopoietin-related protein 6 precursor [Mus m... 64 7e-20
>ref|NP_862897.1| fibrinogen beta chain precursor [Mus musculus].
Length = 481
Score = 444 bits (1141), Expect(2) = e-127
Identities = 243/410 (59%), Positives = 275/410 (67%), Gaps = 12/410 (2%)
Frame = +2
Query: 119 CVFIIKAQAAID-YDEDEDGRPKVHVDARGHRPYDKRREEAPSLRPVAPPISAGGYQPRP 295
CVF ++ QAA D YDE D +DARGHRP D+R+EE PSLRP PPIS GGY+ RP
Sbjct: 11 CVFSVQTQAADDDYDEPTDS-----LDARGHRPVDRRKEEPPSLRPAPPPISGGGYRARP 65
Query: 296 AKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXX 475
AK QKKVER+PPDAGGCLHAD D+GVLCPTGC LQ TLL QERPIK+SI ELN
Sbjct: 66 AKATANQKKVERRPPDAGGCLHADTDMGVLCPTGCTLQQTLLNQERPIKSSIAELNNNIQ 125
Query: 476 XXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNL 655
TFQY+TLLK +WK +Q Q ++NENVINE+SS LE +LYIDETVN NIP NL
Sbjct: 126 SVSDTSSVTFQYLTLLKDMWKKKQAQVKENENVINEYSSILEDQRLYIDETVNDNIPLNL 185
Query: 656 RVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMY 835
RVLR+ILE+LRSKIQKLESD+ AQMEYCRTPCTV+CNIPVVSGKECEEIIR GGETSEMY
Sbjct: 186 RVLRSILEDLRSKIQKLESDISAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMY 245
Query: 836 LIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQGIW---------KY 988
LIQP SI+PYRVYCDMKTE GGWTVIQNRQDGSVDFGRKWDPYK+G KY
Sbjct: 246 LIQPDTSIKPYRVYCDMKTENGGWTVIQNRQDGSVDFGRKWDPYKKGFGNIATNEDAKKY 305
Query: 989 CNQC--KWEKNIVAYQVSIGLEMIKLASLPGWDPQSF*SKWRTGKEAR*RQSTKDSLCRT 1162
C W N Q++ L + W K G +++K +
Sbjct: 306 CGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKV--KAHYGGFTVQNEASKYQVSVN 363
Query: 1163 KPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRDNE 1312
K T N A+ E RTM IHN MFFSTY+RDN+
Sbjct: 364 KYKGTA---GNALMDGASQLVGE-------NRTMTIHNGMFFSTYDRDND 403
Score = 30.4 bits (67), Expect(2) = e-127
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GW TTDPRKQCS
Sbjct: 403 DGWVTTDPRKQCS 415
>ref|NP_031452.2| angiopoietin-2 precursor [Mus musculus].
Length = 496
Score = 73.2 bits (178), Expect(2) = 4e-25
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C EI ++G TS +Y + +S E + YCDM GGWTVIQ+R+DGSVDF R W
Sbjct: 282 RDCAEIFKSGLTTSGIYTLTFPNSTEEIKAYCDMDVGGGGWTVIQHREDGSVDFQRTWKE 341
Query: 965 YKQG 976
YK+G
Sbjct: 342 YKEG 345
Score = 60.8 bits (146), Expect(2) = 4e-25
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ +SQLT L I+++DWEG + ++Y+ F + E + Y+I L+ GTA
Sbjct: 351 GEYWLGNEFVSQLTGQHRYVLKIQLKDWEGNEAHSLYDHFYLAGEESNYRIHLTGLTGTA 410
Query: 1210 G 1212
G
Sbjct: 411 G 411
>ref|NP_082609.2| angiopoietin-related protein 1 precursor [Mus musculus].
Length = 490
Score = 65.9 bits (159), Expect(2) = 6e-24
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + I GEYWLG D I +L+ KL+IE+EDW KV A Y F ++ E++ Y++ L
Sbjct: 339 KGFGNIDGEYWLGLDNIYKLSNQDNYKLMIELEDWSEKKVYAEYSSFRLEPESDYYRLRL 398
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 399 GTYQGNAGDSMM 410
Score = 64.3 bits (155), Expect(2) = 6e-24
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Frame = +2
Query: 713 DVLAQMEYCRTPCTVTCNIPVVSG------KECEEIIRNGGETSEMYLIQPSDSIEPYRV 874
DV+ + P IP V+ K+C++ G S +Y+I+P +S ++
Sbjct: 247 DVMPPPDLPTAPTKSPFKIPAVTFINEGPFKDCQQAKEAGHSASGIYMIKPENSNGLMQL 306
Query: 875 YCDMKTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
+C+ + GGWTVIQ R DGSV+F R W+ YK+G
Sbjct: 307 WCENSLDPGGWTVIQKRTDGSVNFFRNWENYKKG 340
>ref|NP_032039.2| fibroleukin precursor [Mus musculus].
Length = 432
Score = 62.8 bits (151), Expect(3) = 2e-23
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C + G +S Y + P + VYCDM+T GGWTV+Q R DGS +F R+W
Sbjct: 204 KDCSDHYVLGRRSSGAYRVTPDHRNSSFEVYCDMETMGGGWTVLQARLDGSTNFTREWKD 263
Query: 965 YKQG 976
YK G
Sbjct: 264 YKAG 267
Score = 62.8 bits (151), Expect(3) = 2e-23
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
E+WLGNDKI LT+ L I++ED+ G + A+Y+ F V NE KY++ + Y GTAG
Sbjct: 274 EFWLGNDKIHLLTKSKEMILRIDLEDFNGLTLYALYDQFYVANEFLKYRLHIGNYNGTAG 333
Query: 1213 NAL 1221
+AL
Sbjct: 334 DAL 336
Score = 22.3 bits (46), Expect(3) = 2e-23
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNER 1315
H+ FF+T +RDN+R
Sbjct: 344 HDLRFFTTPDRDNDR 358
>ref|NP_033770.2| angiopoietin-1 precursor [Mus musculus].
Length = 498
Score = 66.2 bits (160), Expect(2) = 4e-22
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C ++ + G S +Y I ++ EP +V+C+M GGWTVIQ+R+DGS+DF R W
Sbjct: 284 RDCADVYQAGFNKSGIYTIYFNNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKE 343
Query: 965 YKQG 976
YK G
Sbjct: 344 YKMG 347
Score = 57.8 bits (138), Expect(2) = 4e-22
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ I +T L IE+ DWEG + + Y+ F + NE Y++ L + GTA
Sbjct: 353 GEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTA 412
Query: 1210 G---NALLEGA 1233
G + +L GA
Sbjct: 413 GKQSSLILHGA 423
>ref|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus musculus].
Length = 459
Score = 70.1 bits (170), Expect(3) = 1e-21
Identities = 28/67 (41%), Positives = 46/67 (68%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C +++ +G + +Y I P+ ++VYCDM+T+ GGWTV Q R+DGSV+F R W+
Sbjct: 240 RDCLDVLLSGQQDDGVYSIFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEA 299
Query: 965 YKQGIWK 985
Y++G K
Sbjct: 300 YREGFGK 306
Score = 49.7 bits (117), Expect(3) = 1e-21
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +1
Query: 1024 IPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEG-----FTVQNEANKYQISL 1188
+ GE+WLG +I LT +L +++ED++ G A Y F+V E + Y +++
Sbjct: 307 LTGEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDPEEDGYPLTV 366
Query: 1189 SKYKGTAGNALLE 1227
+ Y GTAG++LL+
Sbjct: 367 ADYSGTAGDSLLK 379
Score = 22.3 bits (46), Expect(3) = 1e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENH 1327
H+ M F+T +RD++ EN+
Sbjct: 380 HSGMRFTTKDRDSDHSENN 398
>ref|NP_034320.1| ficolin-2 precursor [Mus musculus].
Length = 314
Score = 61.6 bits (148), Expect(3) = 3e-21
Identities = 30/64 (46%), Positives = 37/64 (57%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
+ C+E++ G + Y I D P V CDM T+ GGWTV Q R DGSVDF R W
Sbjct: 104 RTCKELLTQGHFLTGWYTIYLPDC-RPLTVLCDMDTDGGGWTVFQRRLDGSVDFFRDWTS 162
Query: 965 YKQG 976
YK+G
Sbjct: 163 YKRG 166
Score = 57.8 bits (138), Expect(3) = 3e-21
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KGT 1206
GE+WLGND I LT G ++L +++ D+EG A Y F +Q EA KY++ L + G
Sbjct: 172 GEFWLGNDNIHALTTQGTSELRVDLSDFEGKHDFAKYSSFQIQGEAEKYKLILGNFLGGG 231
Query: 1207 AGNAL 1221
AG++L
Sbjct: 232 AGDSL 236
Score = 21.2 bits (43), Expect(3) = 3e-21
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNE 1312
HN+ FST ++DN+
Sbjct: 239 HNNRLFSTKDQDND 252
>ref|NP_001034643.1| angiopoietin-related protein 7 precursor [Mus musculus].
Length = 337
Score = 64.3 bits (155), Expect(3) = 5e-21
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +1
Query: 1000 QMGKKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQ 1179
Q + + I G++WLGN+ I +LTR P++L +E+EDWEG A Y F + NE N Y+
Sbjct: 181 QYKQGFGSIRGDFWLGNEHIHRLTRQ-PSRLRVELEDWEGNARYAEYSYFALGNELNSYR 239
Query: 1180 ISLSKYKGTAGNALL 1224
+ L Y G G L
Sbjct: 240 LFLGNYSGNVGKDAL 254
Score = 54.7 bits (130), Expect(3) = 5e-21
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 788 ECEEIIRNGGETSEMYLIQPSDSI--EPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWD 961
+C + + S +Y + P + + V+CDM+T GGWT+IQ R+ G V F + W
Sbjct: 121 DCSSLYQKNYRISGVYKLPPDEFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYQDWR 180
Query: 962 PYKQG 976
YKQG
Sbjct: 181 QYKQG 185
Score = 21.2 bits (43), Expect(3) = 5e-21
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNE 1312
HN+ FST ++DN+
Sbjct: 257 HNNTVFSTKDKDND 270
>ref|NP_598623.1| fibrinogen gamma chain precursor [Mus musculus].
Length = 436
Score = 95.9 bits (237), Expect = 7e-20
Identities = 81/337 (24%), Positives = 141/337 (41%), Gaps = 8/337 (2%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + D L + + + L T + L+K +
Sbjct: 33 CCILDERFGSFCPTTCGIADFLSSYQTDVDNDLRTLEDILFRAENR---TTEAKELIKAI 89
Query: 533 WKDRQKQRRDNENVINEFSSELEK--HQLYIDETVNSNIPTNLRVLRAILENLRSKIQKL 706
+ +I+ + + +K ++ E + T++R L+ I + KI L
Sbjct: 90 QVYYNPDQPPKPGMIDSATQKSKKMVEEIVKYEALLLTHETSIRYLQEIYNSNNQKITNL 149
Query: 707 ESDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDM 886
+ V C+ PC + I +GK+C+EI G + S +Y I+P + + + VYC++
Sbjct: 150 KQKVAQLEAQCQEPCKDSVQIHDTTGKDCQEIANKGAKESGLYFIRPLKAKQQFLVYCEI 209
Query: 887 KTERGGWTVIQNRQDGSVDFGRKWDPYKQGIWKYCNQCKWEKNIVAYQVSIGLEMIKLAS 1066
GWTV+Q R DGS+DF + W YK+G E +G E I L S
Sbjct: 210 DGSGNGWTVLQKRIDGSLDFKKNWIQYKEGFGHLSPTGTTE-------FWLGNEKIHLIS 262
Query: 1067 LPGWDPQSF*SKWRTGKEAR*RQSTKD-SLCRTKPINTRSR*ANTREQLATPSWKEPLNW 1243
+ P + + K+ R ST D ++ R P + + R T + +
Sbjct: 263 MQSTIPYALRIQL---KDWNGRTSTADYAMFRVGPESDKYR--LTYAYFIGGDAGDAFDG 317
Query: 1244 WE-----KTRTMNIHNSMFFSTYNRDNERLENHRSQK 1339
++ + HN M FST++ DN++ E + +++
Sbjct: 318 YDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQ 354
>ref|NP_660136.1| angiopoietin-related protein 6 precursor [Mus musculus].
Length = 457
Score = 63.5 bits (153), Expect(2) = 7e-20
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLG + + Q+T G +LLI +EDW G +A Y+ F+++ E++ Y++ L +Y G A
Sbjct: 312 GEYWLGLEPVHQVTSRGDHELLILLEDWGGRAARAHYDSFSLEPESDHYRLRLGQYHGDA 371
Query: 1210 GNAL 1221
G++L
Sbjct: 372 GDSL 375
Score = 52.8 bits (125), Expect(2) = 7e-20
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = +2
Query: 770 PVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFG 949
PV ++C E G S +Y ++ + V+C+ + E GGWTVIQ RQDGSV+F
Sbjct: 240 PVGPWRDCAEAHGAGHWQSGVYDLRLGRRV--VAVWCEQQQEGGGWTVIQRRQDGSVNFF 297
Query: 950 RKWDPYKQG 976
W YK G
Sbjct: 298 TNWQHYKAG 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,462,741
Number of extensions: 1197717
Number of successful extensions: 3526
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3503
Number of HSP's successfully gapped: 58
Length of query: 454
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 349
Effective length of database: 12,463,779
Effective search space: 4349858871
Effective search space used: 4349858871
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129176.1| PREDICTED: fibrinogen beta chain isoform 1 [... 604 e-176
Alignment gi|XP_003129177.1| PREDICTED: fibrinogen beta chain isoform 2 [... 582 e-169
Alignment gi|XP_003357036.1| PREDICTED: fibrinogen beta chain [Sus scrofa]. 424 e-122
Alignment gi|XP_003361238.1| PREDICTED: fibrinogen gamma chain-like [Sus ... 94 7e-29
Alignment gi|XP_003129181.2| PREDICTED: fibrinogen gamma chain [Sus scrof... 94 7e-29
Alignment gi|NP_001005152.1| fibroleukin [Sus scrofa]. 74 3e-27
Alignment gi|NP_001136300.1| angiopoietin-related protein 7 [Sus scrofa]. 70 2e-24
Alignment gi|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa]. 67 7e-24
Alignment gi|NP_999124.1| angiopoietin-1 precursor [Sus scrofa]. 66 8e-22
Alignment gi|XP_003122287.1| PREDICTED: fibrinogen C domain-containing pr... 69 2e-21
>ref|XP_003129176.1| PREDICTED: fibrinogen beta chain isoform 1 [Sus scrofa].
Length = 495
Score = 604 bits (1558), Expect(2) = e-176
Identities = 315/422 (74%), Positives = 330/422 (78%), Gaps = 4/422 (0%)
Frame = +2
Query: 59 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 238
MVSWDFQKLKIMKP CVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 60
Query: 239 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 418
PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 61 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 120
Query: 419 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 598
LKQERPIKTSIEELN TFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL
Sbjct: 121 LKQERPIKTSIEELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 180
Query: 599 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 778
EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV
Sbjct: 181 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 240
Query: 779 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 958
SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW
Sbjct: 241 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 300
Query: 959 DPYKQGIWKYCNQCKWEKNI-VAYQVSIGLEMIKLASLPGWDPQSF---*SKWRTGKEAR 1126
DPYKQG +K + + +G + K++ L P W GK
Sbjct: 301 DPYKQGFGNIATSADGKKYCGIPGEYWLGND--KISQLTRMGPTKLLIEMEDWEGGKVKA 358
Query: 1127 *RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRD 1306
+ K + S+ T + + + RTM IHNSMFFSTY+RD
Sbjct: 359 IYEGFTVQNEANKYQISLSKYKGTAGNALLEGASQLVG---ENRTMTIHNSMFFSTYDRD 415
Query: 1307 NE 1312
N+
Sbjct: 416 ND 417
Score = 33.1 bits (74), Expect(2) = e-176
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GWKTTDPRKQCS
Sbjct: 417 DGWKTTDPRKQCS 429
>ref|XP_003129177.1| PREDICTED: fibrinogen beta chain isoform 2 [Sus scrofa].
Length = 488
Score = 582 bits (1500), Expect(2) = e-169
Identities = 308/422 (72%), Positives = 323/422 (76%), Gaps = 4/422 (0%)
Frame = +2
Query: 59 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 238
MVSWDFQKLKIMKP CVFIIKAQAAIDYDE VHVDARGHRPYDKRREEA
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDE-------VHVDARGHRPYDKRREEA 53
Query: 239 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 418
PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 54 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 113
Query: 419 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 598
LKQERPIKTSIEELN TFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL
Sbjct: 114 LKQERPIKTSIEELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 173
Query: 599 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 778
EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV
Sbjct: 174 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 233
Query: 779 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 958
SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW
Sbjct: 234 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 293
Query: 959 DPYKQGIWKYCNQCKWEKNI-VAYQVSIGLEMIKLASLPGWDPQSF---*SKWRTGKEAR 1126
DPYKQG +K + + +G + K++ L P W GK
Sbjct: 294 DPYKQGFGNIATSADGKKYCGIPGEYWLGND--KISQLTRMGPTKLLIEMEDWEGGKVKA 351
Query: 1127 *RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRD 1306
+ K + S+ T + + + RTM IHNSMFFSTY+RD
Sbjct: 352 IYEGFTVQNEANKYQISLSKYKGTAGNALLEGASQLVG---ENRTMTIHNSMFFSTYDRD 408
Query: 1307 NE 1312
N+
Sbjct: 409 ND 410
Score = 33.1 bits (74), Expect(2) = e-169
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GWKTTDPRKQCS
Sbjct: 410 DGWKTTDPRKQCS 422
>ref|XP_003357036.1| PREDICTED: fibrinogen beta chain [Sus scrofa].
Length = 432
Score = 424 bits (1090), Expect(2) = e-122
Identities = 247/422 (58%), Positives = 264/422 (62%), Gaps = 4/422 (0%)
Frame = +2
Query: 59 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 238
MVSWDFQKLKIMKP CVFIIKAQAAIDYDE VHVDARGHRPYD
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDE-------VHVDARGHRPYD------ 47
Query: 239 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 418
K+ E P +TL
Sbjct: 48 --------------------------KRREEAP------------------------NTL 57
Query: 419 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 598
LKQERPIKTSIEELN TFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL
Sbjct: 58 LKQERPIKTSIEELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 117
Query: 599 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 778
EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV
Sbjct: 118 EKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEYCRTPCTVTCNIPVV 177
Query: 779 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 958
SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW
Sbjct: 178 SGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKW 237
Query: 959 DPYKQGIWKYCNQCKWEKNI-VAYQVSIGLEMIKLASLPGWDPQSF---*SKWRTGKEAR 1126
DPYKQG +K + + +G + K++ L P W GK
Sbjct: 238 DPYKQGFGNIATSADGKKYCGIPGEYWLGND--KISQLTRMGPTKLLIEMEDWEGGKVKA 295
Query: 1127 *RQSTKDSLCRTKPINTRSR*ANTREQLATPSWKEPLNWWEKTRTMNIHNSMFFSTYNRD 1306
+ K + S+ T + + + RTM IHNSMFFSTY+RD
Sbjct: 296 IYEGFTVQNEANKYQISLSKYKGTAGNALLEGASQLVG---ENRTMTIHNSMFFSTYDRD 352
Query: 1307 NE 1312
N+
Sbjct: 353 ND 354
Score = 33.1 bits (74), Expect(2) = e-122
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 1311 NGWKTTDPRKQCS 1349
+GWKTTDPRKQCS
Sbjct: 354 DGWKTTDPRKQCS 366
>ref|XP_003361238.1| PREDICTED: fibrinogen gamma chain-like [Sus scrofa].
Length = 438
Score = 94.0 bits (232), Expect(3) = 7e-29
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 1/209 (0%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + L + ++ ++ L + + ++
Sbjct: 35 CCILDERFGSYCPTMCGIAGFLSTYQNTVEKDLQNLEGILHQVENKTSEARELIKAIQIS 94
Query: 533 WKDRQKQRRDN-ENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLE 709
+ + D ++ E LE+ Y E + + + +R L+ I + KI L+
Sbjct: 95 YNPEDLSKPDRIQSATKESKKMLEEIMKY--ENLITTHDSTIRFLQEIYNSNNQKISNLK 152
Query: 710 SDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMK 889
V+ C+ PC T I +GK+C+EI G S +Y I+P + + + VYC++
Sbjct: 153 QKVIQLEAKCQEPCKDTVKIHDTTGKDCQEIANKGARESGLYFIKPLKAPKKFLVYCEID 212
Query: 890 TERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV Q R DGS DF + W YK+G
Sbjct: 213 GSGNGWTVFQKRVDGSEDFKKNWIQYKEG 241
Score = 47.0 bits (110), Expect(3) = 7e-29
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI +T P L +++EDW G A Y F V E++KY+++ + + G
Sbjct: 252 EFWLGNEKIHLITTQSAIPYVLRVQLEDWSGKTSTADYSTFRVGPESDKYRMTYAYFLGG 311
Query: 1204 TAGNA 1218
AG+A
Sbjct: 312 DAGDA 316
Score = 25.4 bits (54), Expect(3) = 7e-29
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENHRSQK 1339
HN M FST++ DN++ + + +++
Sbjct: 334 HNGMQFSTWDNDNDKFDGNCAEQ 356
>ref|XP_003129181.2| PREDICTED: fibrinogen gamma chain [Sus scrofa].
Length = 438
Score = 94.0 bits (232), Expect(3) = 7e-29
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 1/209 (0%)
Frame = +2
Query: 353 CLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRL 532
C D G CPT C + L + ++ ++ L + + ++
Sbjct: 35 CCILDERFGSYCPTMCGIAGFLSTYQNTVEKDLQNLEGILHQVENKTSEARELIKAIQIS 94
Query: 533 WKDRQKQRRDN-ENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLE 709
+ + D ++ E LE+ Y E + + + +R L+ I + KI L+
Sbjct: 95 YNPEDLSKPDRIQSATKESKKMLEEIMKY--ENLITTHDSTIRFLQEIYNSNNQKISNLK 152
Query: 710 SDVLAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMK 889
V+ C+ PC T I +GK+C+EI G S +Y I+P + + + VYC++
Sbjct: 153 QKVIQLEAKCQEPCKDTVKIHDTTGKDCQEIANKGARESGLYFIKPLKAPKKFLVYCEID 212
Query: 890 TERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV Q R DGS DF + W YK+G
Sbjct: 213 GSGNGWTVFQKRVDGSEDFKKNWIQYKEG 241
Score = 47.0 bits (110), Expect(3) = 7e-29
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMG--PTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKY-KG 1203
E+WLGN+KI +T P L +++EDW G A Y F V E++KY+++ + + G
Sbjct: 252 EFWLGNEKIHLITTQSAIPYVLRVQLEDWSGKTSTADYSTFRVGPESDKYRMTYAYFLGG 311
Query: 1204 TAGNA 1218
AG+A
Sbjct: 312 DAGDA 316
Score = 25.4 bits (54), Expect(3) = 7e-29
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENHRSQK 1339
HN M FST++ DN++ + + +++
Sbjct: 334 HNGMQFSTWDNDNDKFDGNCAEQ 356
>ref|NP_001005152.1| fibroleukin [Sus scrofa].
Length = 442
Score = 74.3 bits (181), Expect(3) = 3e-27
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = +2
Query: 557 RDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESDVLAQMEY 736
R+ EN +N+ SS+L+ + ID +L + I + +K+ L V +
Sbjct: 133 RELENEVNKLSSDLKNAKEEIDGLQGRLEKLSLVNMNNIENYVDNKVANLTFAVNSLDGK 192
Query: 737 CRTPCTVTCNI---PV--VSGKECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERG 901
C + C I PV + K+C E G +SE+Y + P + VYCDM+T G
Sbjct: 193 CSSRCPSQEQIQSRPVQHLIYKDCSEYYTIGKRSSEIYRVTPDPKNSSFEVYCDMETMGG 252
Query: 902 GWTVIQNRQDGSVDFGRKWDPYKQG 976
GWTV+Q R DGS +F R W YK G
Sbjct: 253 GWTVLQARLDGSTNFTRTWRDYKVG 277
Score = 65.1 bits (157), Expect(3) = 3e-27
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = +1
Query: 1033 EYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTAG 1212
E+WLGNDKI LT+ L I++ED+ G K+ A+Y+ F V NE KY++ + Y GTAG
Sbjct: 284 EFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFLKYRLHIGNYNGTAG 343
Query: 1213 NAL 1221
+AL
Sbjct: 344 DAL 346
Score = 21.6 bits (44), Expect(3) = 3e-27
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNER 1315
H+ +F+T +RDN+R
Sbjct: 354 HDMKYFTTPDRDNDR 368
>ref|NP_001136300.1| angiopoietin-related protein 7 [Sus scrofa].
Length = 344
Score = 70.1 bits (170), Expect(3) = 2e-24
Identities = 34/75 (45%), Positives = 47/75 (62%)
Frame = +1
Query: 1000 QMGKKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQ 1179
Q + + I G++WLGN+ I +L+R PT+L +EMEDWEG K A Y F + NE N Y+
Sbjct: 188 QYKQGFGSIRGDFWLGNEHIHRLSRR-PTRLRVEMEDWEGTKRHAEYSRFALGNELNSYR 246
Query: 1180 ISLSKYKGTAGNALL 1224
+ L Y G+ GN L
Sbjct: 247 LFLGNYSGSVGNDAL 261
Score = 59.7 bits (143), Expect(3) = 2e-24
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Frame = +2
Query: 536 KDRQKQRRDNENVINEFSSELEKHQLYIDETVNSNIPTNLRVLRAILENLRSKIQKLESD 715
K+ + Q + ++++E S + E+ + + V + ++ + + + L SK ++ +
Sbjct: 48 KELKAQIANLSSLLSELSQKQERDWVSVVMQV-MELESSSKRMESRLTAAESKFSEMNNQ 106
Query: 716 V-LAQMEYCRTPCTVTCNIPVVSGKECEEIIRNGGETSEMYLIQPSDSI--EPYRVYCDM 886
+ + Q++ +T + + +C + + S +Y + P D + V+CDM
Sbjct: 107 IDIMQLQAAQTVTQTSADAIY----DCSSLYQKSYRISGVYKLPPDDFLGSPELEVFCDM 162
Query: 887 KTERGGWTVIQNRQDGSVDFGRKWDPYKQG 976
+T GGWT+IQ R+ G V F R W YKQG
Sbjct: 163 ETSGGGWTIIQRRKSGLVSFYRDWKQYKQG 192
Score = 21.6 bits (44), Expect(3) = 2e-24
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 1262 MNIHNSMFFSTYNRDNE 1312
++ HN+ FST ++DN+
Sbjct: 261 LSYHNNTAFSTKDKDND 277
>ref|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa].
Length = 491
Score = 67.0 bits (162), Expect(2) = 7e-24
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
K+C+ G S +Y+I+P +S P +++C+ + GGWTVIQ R DGSV+F R W+
Sbjct: 278 KDCQHAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWEN 337
Query: 965 YKQG 976
YK+G
Sbjct: 338 YKKG 341
Score = 62.4 bits (150), Expect(2) = 7e-24
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +1
Query: 1009 KKYCGIPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISL 1188
K + GEYWLG + I L+ KLLIE+EDW KV A Y F ++ E+ Y++ L
Sbjct: 340 KGFGNTDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLRL 399
Query: 1189 SKYKGTAGNALL 1224
Y+G AG++++
Sbjct: 400 GTYQGNAGDSMM 411
>ref|NP_999124.1| angiopoietin-1 precursor [Sus scrofa].
Length = 498
Score = 66.2 bits (160), Expect(2) = 8e-22
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C ++ + G S +Y I ++ EP +V+C+M GGWTVIQ+R+DGS+DF R W
Sbjct: 284 RDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDGSLDFQRGWKE 343
Query: 965 YKQG 976
YK G
Sbjct: 344 YKMG 347
Score = 56.2 bits (134), Expect(2) = 8e-22
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 1030 GEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEGFTVQNEANKYQISLSKYKGTA 1209
GEYWLGN+ I +T L E+ DWEG + + Y+ F + NE Y++ L + GTA
Sbjct: 353 GEYWLGNEFIFAITSQRQYTLRTELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHSGTA 412
Query: 1210 G---NALLEGA 1233
G + +L GA
Sbjct: 413 GKQSSLILHGA 423
>ref|XP_003122287.1| PREDICTED: fibrinogen C domain-containing protein 1 [Sus scrofa].
Length = 461
Score = 68.9 bits (167), Expect(3) = 2e-21
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = +2
Query: 785 KECEEIIRNGGETSEMYLIQPSDSIEPYRVYCDMKTERGGWTVIQNRQDGSVDFGRKWDP 964
++C +++ +G + +Y + P+ ++VYCDM T+ GGWTV Q R+DGSV+F R W+
Sbjct: 242 RDCLDVLLSGQQEDGVYSVFPTHDPAGFQVYCDMSTDGGGWTVFQRREDGSVNFFRGWEA 301
Query: 965 YKQGIWK 985
Y+ G K
Sbjct: 302 YRDGFGK 308
Score = 49.7 bits (117), Expect(3) = 2e-21
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +1
Query: 1024 IPGEYWLGNDKISQLTRMGPTKLLIEMEDWEGGKVKAIYEG-----FTVQNEANKYQISL 1188
+ GE+WLG ++ LT +L +++ED++ G A Y F+V E + Y +++
Sbjct: 309 LTGEHWLGLKRLHALTTQAAYELHVDLEDFDNGTAYAHYRSFGVGLFSVDPEEDGYPLTV 368
Query: 1189 SKYKGTAGNALLE 1227
+ Y GTAG++LL+
Sbjct: 369 ADYSGTAGDSLLK 381
Score = 22.3 bits (46), Expect(3) = 2e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 1271 HNSMFFSTYNRDNERLENH 1327
H+ M F+T +RD++ EN+
Sbjct: 382 HSGMRFTTKDRDSDHSENN 400
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,244,081
Number of extensions: 879148
Number of successful extensions: 2638
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2622
Number of HSP's successfully gapped: 74
Length of query: 454
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,804,438
Effective search space: 3099162176
Effective search space used: 3099162176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007023
(1363 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 521 e-145
>Sscrofa_Chr08
|| Length = 148491826
Score = 521 bits (263), Expect = e-145
Identities = 279/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1029 aggtgagtattggcttggaaatgataaaattagccagcttaccaggatgggacccacaaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78954490 aggtgagtattggcttggaaatgataaaattagccagcttaccaggatgggacccacaaa 78954431
Query: 1089 gcttttgatcgaaatggaggactgggaaggaggcaaggtgaaggcaatctacgaaggatt 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78954430 gcttttgatcgaaatggaggactgggaaggaggcaaggtgaaggcaatctacgaaggatt 78954371
Query: 1149 cactgtgcagaacgaagccaataaataccagatctcgctgagcaaatacaagggaacagc 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78954370 cactgtgcagaacgaagccaataaataccagatctcgctgagcaaatacaagggaacagc 78954311
Query: 1209 tggcaacgccctcttggaaggagcctctcaactggtgggagaaaacccgaaccatgaaca 1268
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 78954310 tggcaacgccctcttggaaggagcctctcaactggtgggagaaaa-ccgaaccatgacaa 78954252
Query: 1269 tccacaacagcatgttcttcagcacctacaacagagacaacga 1311
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 78954251 tccacaacagcatgttcttcagcacctacgacagagacaacga 78954209
Score = 521 bits (263), Expect = e-145
Identities = 279/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1029 aggtgagtattggcttggaaatgataaaattagccagcttaccaggatgggacccacaaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79086282 aggtgagtattggcttggaaatgataaaattagccagcttaccaggatgggacccacaaa 79086223
Query: 1089 gcttttgatcgaaatggaggactgggaaggaggcaaggtgaaggcaatctacgaaggatt 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79086222 gcttttgatcgaaatggaggactgggaaggaggcaaggtgaaggcaatctacgaaggatt 79086163
Query: 1149 cactgtgcagaacgaagccaataaataccagatctcgctgagcaaatacaagggaacagc 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79086162 cactgtgcagaacgaagccaataaataccagatctcgctgagcaaatacaagggaacagc 79086103
Query: 1209 tggcaacgccctcttggaaggagcctctcaactggtgggagaaaacccgaaccatgaaca 1268
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 79086102 tggcaacgccctcttggaaggagcctctcaactggtgggagaaaa-ccgaaccatgacaa 79086044
Query: 1269 tccacaacagcatgttcttcagcacctacaacagagacaacga 1311
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 79086043 tccacaacagcatgttcttcagcacctacgacagagacaacga 79086001
Score = 456 bits (230), Expect = e-125
Identities = 230/230 (100%)
Strand = Plus / Minus
Query: 559 agataatgaaaatgtcataaatgagttctcgtccgagctggaaaagcaccagctctatat 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78956303 agataatgaaaatgtcataaatgagttctcgtccgagctggaaaagcaccagctctatat 78956244
Query: 619 agatgaaactgtgaacagcaacatccccactaacttgcgtgtgctccgtgccatcctgga 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78956243 agatgaaactgtgaacagcaacatccccactaacttgcgtgtgctccgtgccatcctgga 78956184
Query: 679 aaacttgagaagcaaaatacagaaattagaatcggatgtcttggctcagatggaatactg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78956183 aaacttgagaagcaaaatacagaaattagaatcggatgtcttggctcagatggaatactg 78956124
Query: 739 ccgtactccatgtaccgtcacttgcaatattcctgtggtgtctggcaaag 788
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78956123 ccgtactccatgtaccgtcacttgcaatattcctgtggtgtctggcaaag 78956074
Score = 456 bits (230), Expect = e-125
Identities = 230/230 (100%)
Strand = Plus / Minus
Query: 559 agataatgaaaatgtcataaatgagttctcgtccgagctggaaaagcaccagctctatat 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79088095 agataatgaaaatgtcataaatgagttctcgtccgagctggaaaagcaccagctctatat 79088036
Query: 619 agatgaaactgtgaacagcaacatccccactaacttgcgtgtgctccgtgccatcctgga 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79088035 agatgaaactgtgaacagcaacatccccactaacttgcgtgtgctccgtgccatcctgga 79087976
Query: 679 aaacttgagaagcaaaatacagaaattagaatcggatgtcttggctcagatggaatactg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79087975 aaacttgagaagcaaaatacagaaattagaatcggatgtcttggctcagatggaatactg 79087916
Query: 739 ccgtactccatgtaccgtcacttgcaatattcctgtggtgtctggcaaag 788
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79087915 ccgtactccatgtaccgtcacttgcaatattcctgtggtgtctggcaaag 79087866
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 182 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958958 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 78958899
Query: 242 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958898 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 78958839
Query: 302 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958838 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 78958779
Query: 362 gctgatccggacctgg 377
||||||||||||||||
Sbjct: 78958778 gctgatccggacctgg 78958763
Score = 373 bits (188), Expect = e-100
Identities = 195/196 (99%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 182 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79090749 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 79090690
Query: 242 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79090689 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 79090630
Query: 302 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 79090629 gtagctattggccagaagaaagtggagagaaaaccccctgatgct-ggggctgcctgcat 79090571
Query: 362 gctgatccggacctgg 377
||||||||||||||||
Sbjct: 79090570 gctgatccggacctgg 79090555
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 376 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958019 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 78957960
Query: 436 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78957959 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 78957900
Query: 496 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78957899 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 78957840
Query: 556 aagag 560
|||||
Sbjct: 78957839 aagag 78957835
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 376 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089811 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 79089752
Query: 436 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089751 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 79089692
Query: 496 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089691 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 79089632
Query: 556 aagag 560
|||||
Sbjct: 79089631 aagag 79089627
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1 cagaggcttcgggcatatataagactgaagatctctcagttaagaccacaagcaaaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78961936 cagaggcttcgggcatatataagactgaagatctctcagttaagaccacaagcaaaggat 78961877
Query: 61 ggtttcttgggacttccaaaaacttaaaatcatgaaacctctattactgctactattgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78961876 ggtttcttgggacttccaaaaacttaaaatcatgaaacctctattactgctactattgtg 78961817
Query: 121 tgtttttataattaaggcccaagctgccattgactacgatgagg 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78961816 tgtttttataattaaggcccaagctgccattgactacgatgagg 78961773
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1 cagaggcttcgggcatatataagactgaagatctctcagttaagaccacaagcaaaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79093727 cagaggcttcgggcatatataagactgaagatctctcagttaagaccacaagcaaaggat 79093668
Query: 61 ggtttcttgggacttccaaaaacttaaaatcatgaaacctctattactgctactattgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79093667 ggtttcttgggacttccaaaaacttaaaatcatgaaacctctattactgctactattgtg 79093608
Query: 121 tgtttttataattaaggcccaagctgccattgactacgatgagg 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79093607 tgtttttataattaaggcccaagctgccattgactacgatgagg 79093564
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 787 agaatgtgaggaaattatcaggaatggaggcgaaacatctgaaatgtatctcattcagcc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78955528 agaatgtgaggaaattatcaggaatggaggcgaaacatctgaaatgtatctcattcagcc 78955469
Query: 847 tagtgattccatcgaaccctatagagtgtactgtgatatgaagacagaaagaggagg 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78955468 tagtgattccatcgaaccctatagagtgtactgtgatatgaagacagaaagaggagg 78955412
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 787 agaatgtgaggaaattatcaggaatggaggcgaaacatctgaaatgtatctcattcagcc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79087320 agaatgtgaggaaattatcaggaatggaggcgaaacatctgaaatgtatctcattcagcc 79087261
Query: 847 tagtgattccatcgaaccctatagagtgtactgtgatatgaagacagaaagaggagg 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79087260 tagtgattccatcgaaccctatagagtgtactgtgatatgaagacagaaagaggagg 79087204
Score = 188 bits (95), Expect = 5e-45
Identities = 105/107 (98%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 901 aggatggacagtaattcagaaccgtcaagacggtagtgttgactttggcaggaaatggga 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78954832 aggatggacagtaattcagaaccgtcaagacggtagtgttgactttggcaggaaatggga 78954773
Query: 961 tccatataagcaaggaatttggaaatattgcaaccagtgcaaatggg 1007
||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 78954772 tccatataagcaagg-atttggaaatattgcaaccagtgcagatggg 78954727
Score = 188 bits (95), Expect = 5e-45
Identities = 105/107 (98%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 901 aggatggacagtaattcagaaccgtcaagacggtagtgttgactttggcaggaaatggga 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79086624 aggatggacagtaattcagaaccgtcaagacggtagtgttgactttggcaggaaatggga 79086565
Query: 961 tccatataagcaaggaatttggaaatattgcaaccagtgcaaatggg 1007
||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 79086564 tccatataagcaagg-atttggaaatattgcaaccagtgcagatggg 79086519
Score = 60.0 bits (30), Expect = 3e-06
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 1318 ggaaaaccacagatcccagaaagcagtgttcctaaaaaggatggtg 1363
||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct: 78953372 ggaaaacgacagatcccagaaagcagtgtt-ctaaagaggatggtg 78953328
Score = 60.0 bits (30), Expect = 3e-06
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 1318 ggaaaaccacagatcccagaaagcagtgttcctaaaaaggatggtg 1363
||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct: 79085163 ggaaaacgacagatcccagaaagcagtgtt-ctaaagaggatggtg 79085119
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,155,778
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 16
Length of query: 1363
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1342
Effective length of database: 2,808,413,156
Effective search space: 3768890455352
Effective search space used: 3768890455352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)