Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777246.1| factor XIIa inhibitor precursor [Bos taurus]. 246 3e-65
Alignment gi|NP_001136389.1| fibrinogen beta chain [Bos taurus]. 234 1e-61
Alignment gi|NP_777095.1| alpha-2-antiplasmin precursor [Bos taurus]. 59 8e-09
Alignment gi|NP_776565.1| pigment epithelium-derived factor precursor [Bo... 57 3e-08
Alignment gi|NP_001075213.1| serpin A3-5 [Bos taurus]. 57 5e-08
Alignment gi|NP_001139774.1| serpin A3-6 [Bos taurus]. 55 1e-07
Alignment gi|NP_001033293.1| serpin A3-3 [Bos taurus]. 55 1e-07
Alignment gi|XP_002695762.1| PREDICTED: pigment epithelium-derived factor... 55 1e-07
Alignment gi|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus]. 55 2e-07
Alignment gi|NP_777193.2| serpin A3-1 precursor [Bos taurus]. 54 3e-07
>ref|NP_777246.1| factor XIIa inhibitor precursor [Bos taurus].
Length = 468
Score = 246 bits (628), Expect = 3e-65
Identities = 124/192 (64%), Positives = 146/192 (76%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
TS + F+ KSS IKV M+NSKKYPVA FTD TL GRLQLSHNLS VILVPQT+KH L
Sbjct: 282 TSTKPFHLKSSAIKVPMMNSKKYPVASFTDRTLNRPGGRLQLSHNLSFVILVPQTVKHHL 341
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 900
+D+E+ALS VFKAV+ KLE TKF+PTH MPRIK++ +QDM L++FDF YD+NL
Sbjct: 342 QDLEQALSTAVFKAVIKKLEMTKFHPTHLTMPRIKVQSSQDM------LDYFDFIYDVNL 395
Query: 901 CGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
CGLTED D+QVS ++HQA LEL E+G LL+FEVQQPFLF+LWDQ HK
Sbjct: 396 CGLTEDPDVQVSGIRHQATLELTESGVDATAASVVSVARNLLLFEVQQPFLFLLWDQQHK 455
Query: 1081 FPVFMGRVYDPR 1116
FPVFMGRVYDP+
Sbjct: 456 FPVFMGRVYDPK 467
>ref|NP_001136389.1| fibrinogen beta chain [Bos taurus].
Length = 495
Score = 234 bits (598), Expect = 1e-61
Identities = 110/173 (63%), Positives = 130/173 (75%)
Frame = +2
Query: 11 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 190
M+S +F+K K MK C FI++AQ DYDE +D RPKV + ARGHRPYDK++EEA
Sbjct: 1 MISCNFEKFKTMKHLLLLLFCAFIVQAQFPTDYDEGQDDRPKVGLGARGHRPYDKKKEEA 60
Query: 191 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 370
PSLRPV PPIS GGY+ RPA +GQKKVERKPPDA GCLHADPDLGVLCPTGC+LQDTL
Sbjct: 61 PSLRPVPPPISGGGYRARPATATVGQKKVERKPPDADGCLHADPDLGVLCPTGCKLQDTL 120
Query: 371 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI 529
++QERPI+ SIE+L TFQY+TLLK +WK RQ Q +DNENV+
Sbjct: 121 VRQERPIRKSIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDNENVV 173
>ref|NP_777095.1| alpha-2-antiplasmin precursor [Bos taurus].
Length = 492
Score = 59.3 bits (142), Expect = 8e-09
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 1/180 (0%)
Frame = +1
Query: 577 IKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVF 756
+ V M+ + YP+ F + +V +N+S V+L+P + + L+ +
Sbjct: 264 VPVDMMQALTYPLHWFLLEQPEIQVAHFPFKNNMSFVVLMPTRFEWNASQVLANLTWDIL 323
Query: 757 KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVS 936
S PT +P++ +K D++ + +L + +L G++++ L VS
Sbjct: 324 HQ-----PSLSERPTKVQLPKLHLKYQLDLVATLSQLGLQELFQAPDLRGISDER-LVVS 377
Query: 937 TMQHQAMLELMETGXXXXXXXXXXXXXXLLV-FEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
++QHQ+ LEL E G L F V +PFLF + + P+F+G V +P
Sbjct: 378 SVQHQSALELSEAGVQAAAATSTAMSRMSLSSFIVNRPFLFFILEDSTSLPLFVGSVRNP 437
>ref|NP_776565.1| pigment epithelium-derived factor precursor [Bos taurus].
Length = 416
Score = 57.4 bits (137), Expect = 3e-08
Identities = 43/195 (22%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
TSLE FY + +KV M++ + + + D L K+ +L L+ + S++ +PQ +
Sbjct: 224 TSLEDFYLDEERTVKVPMMSDPQAVLRYGLDSDLNCKIAQLPLTGSTSIIFFLPQKVTQN 283
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLN 897
L +E++L++ + +L++ + T +P++K+ ++ +++L+ +D
Sbjct: 284 LTLIEESLTSEFIHDIDRELKTVQAVLT---IPKLKLSYEGELTKSVQELK-LQSLFDAP 339
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL--LVFEVQQPFLFVLWDQ 1071
++++ ++H+ E E G L + + QPF+FVL D
Sbjct: 340 DFSKITGKPIKLTQVEHRVGFEWNEDGAGTNSSPGVQPARLTFPLDYHLNQPFIFVLRDT 399
Query: 1072 HHKFPVFMGRVYDPR 1116
+F+G++ DPR
Sbjct: 400 DTGALLFIGKILDPR 414
>ref|NP_001075213.1| serpin A3-5 [Bos taurus].
Length = 411
Score = 56.6 bits (135), Expect = 5e-08
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 2/190 (1%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E SK+ ++V M+ + +F D L + L S N S + ++P + +++D+
Sbjct: 224 EFHVSKNKTVEVPMM-TLDLETPYFRDKELGCMLVELTYSSNDSALFILPD--EGKMQDL 280
Query: 730 EKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGL 909
E L+ N L+ + + + +P+ IK N ++ + ++ D +L G+
Sbjct: 281 EAKLTPETLTRWRNSLQPRRIHELY--LPKFSIKSNYELNDTLSQMGIKKIFTDADLSGI 338
Query: 910 TEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQHHKF 1083
T ADL VS + H A L++ E G L + V +PFL + + +
Sbjct: 339 TGTADLVVSQVVHGAALDVDEEGTEGAAATGIGIERTFLRIIVRVNRPFLIAVVLKDTQS 398
Query: 1084 PVFMGRVYDP 1113
+F+G+V +P
Sbjct: 399 IIFLGKVTNP 408
>ref|NP_001139774.1| serpin A3-6 [Bos taurus].
Length = 414
Score = 55.1 bits (131), Expect = 1e-07
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Frame = +1
Query: 619 HFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYP 798
+F D L + L + N S + ++P K +++D+E L+ + N L+ + +
Sbjct: 249 YFRDEELGCTLVELTYTSNDSALFILPD--KGKMQDLEAKLTPEMLTRWRNSLQPRRIHE 306
Query: 799 THFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVSTMQHQAMLELMETG 978
+ +P+ IK N ++ + ++ D +L G+T ADL VS + H A L++ E G
Sbjct: 307 LY--LPKFSIKSNYELNDTLSQMGIKKIFTDADLSGITGTADLVVSQVVHGAALDVDEEG 364
Query: 979 XXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
L + V +PFL + + + +F+G+V +P
Sbjct: 365 TEGAAATGIGIERTFLRIIVRVNRPFLIAVVLKDTQSIIFLGKVTNP 411
>ref|NP_001033293.1| serpin A3-3 [Bos taurus].
Length = 411
Score = 55.1 bits (131), Expect = 1e-07
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Frame = +1
Query: 619 HFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYP 798
+F D L + L + N S + ++P K +++D+E L+ + N L+ + +
Sbjct: 246 YFRDEELGCTLVELTYTSNDSALFILPD--KGKMQDLEAKLTPEMLTRWRNSLQPRRIHE 303
Query: 799 THFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVSTMQHQAMLELMETG 978
+ +P+ IK N ++ + ++ D +L G+T ADL VS + H A L++ E G
Sbjct: 304 LY--LPKFSIKSNYELNDTLSQMGIKKIFTDADLSGITGTADLVVSQVVHGAALDVDEEG 361
Query: 979 XXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
L + V +PFL + + + +F+G+V +P
Sbjct: 362 TEGAAATGIGIERTFLRIIVRVNRPFLIAVVLKDTQSIIFLGKVTNP 408
>ref|XP_002695762.1| PREDICTED: pigment epithelium-derived factor-like [Bos taurus].
Length = 210
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/197 (21%), Positives = 93/197 (47%), Gaps = 4/197 (2%)
Frame = +1
Query: 541 TSLEAFYSKSSE--IKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKH 714
TSLE F E +KV M++ + + + D L K+ +L L+ + S++ +PQ +
Sbjct: 14 TSLERFKYLDEERTVKVPMMSDPQAVLRYGLDSDLNCKIAQLPLTGSTSIIFFLPQKVTQ 73
Query: 715 RLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDL 894
L +E++L++ + +L++ + T +P++K+ ++ +++L+ +D
Sbjct: 74 NLTLIEESLTSEFIHDIDRELKTVQAVLT---IPKLKLSYEGELTKSVQELK-LQSLFDA 129
Query: 895 NLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL--LVFEVQQPFLFVLWD 1068
++++ ++H+ E E G L + + QPF+FVL D
Sbjct: 130 PDFSKITGKPIKLTQVEHRVGFEWNEDGAGTNSSPGVQPARLTFPLDYHLNQPFIFVLRD 189
Query: 1069 QHHKFPVFMGRVYDPRS 1119
+F+G++ DPR+
Sbjct: 190 TDTGALLFIGKILDPRA 206
>ref|XP_002696874.1| PREDICTED: endopin 2C-like [Bos taurus].
Length = 417
Score = 54.7 bits (130), Expect = 2e-07
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 8/197 (4%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E SK+ +KV M+ + + +F D L + L + N S + ++P + +++D+
Sbjct: 227 EFHVSKNERVKVPMM-TLRLETPYFRDEELGCTLVELTYTSNDSALFILPD--EGKMQDL 283
Query: 730 EKALSAPVFKAVMNKLESTKFYPTHF---MMPRIKIKGNQDMLPIMEKLEFFD-FTYDLN 897
E L+ N L+ P H +PR I + + I+ +L FT D +
Sbjct: 284 EAKLTPETLTRWRNSLQ-----PRHIDELSLPRFSISSDYQLRDILSQLGIKKIFTSDAD 338
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL----LVFEVQQPFLFVLW 1065
G+T D L VS + H+A+L++ E G L L +PFL ++
Sbjct: 339 FSGITNDHKLAVSQVIHKAVLDVGEEGTEGAAVTAVIMFTSLPLHALNISFNRPFLLSIF 398
Query: 1066 DQHHKFPVFMGRVYDPR 1116
+ + +F+G+V +P+
Sbjct: 399 CKETQSIIFLGKVTNPK 415
>ref|NP_777193.2| serpin A3-1 precursor [Bos taurus].
Length = 411
Score = 54.3 bits (129), Expect = 3e-07
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Frame = +1
Query: 619 HFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYP 798
+F D L + L + N S + ++P K R D+E L+ N L+ + +
Sbjct: 246 YFRDEELGCTLVELTYTSNDSALFILPDEGKMR--DLEAKLTPETLTRWRNSLQPRRIHE 303
Query: 799 THFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVSTMQHQAMLELMETG 978
+ +P+ IK N ++ I+ +L + +L G+T ADL VS + H A L++ E G
Sbjct: 304 LY--LPKFSIKSNYELNDILSQLGIRKIFANADLSGITGTADLVVSQVVHGAALDVDEEG 361
Query: 979 XXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
+L + V +PFL + + + +F+G+V +P
Sbjct: 362 TEGAAATGISMERTILRIIVRVNRPFLIAIVLKDTQSIIFLGKVTNP 408
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,474,304
Number of extensions: 1518107
Number of successful extensions: 6317
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6256
Number of HSP's successfully gapped: 16
Length of query: 459
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,174,046
Effective search space: 5003438238
Effective search space used: 5003438238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain pre... 218 8e-57
Alignment gi|XP_532696.2| PREDICTED: similar to Fibrinogen beta chain pre... 213 3e-55
Alignment gi|XP_533173.2| PREDICTED: similar to Plasma protease C1 inhibi... 157 3e-38
Alignment gi|XP_854003.1| PREDICTED: similar to Alpha-2-antiplasmin precu... 60 4e-09
Alignment gi|XP_547962.2| PREDICTED: similar to serine (or cysteine) prot... 55 1e-07
Alignment gi|NP_001071056.2| pigment epithelium-derived factor [Canis lup... 55 2e-07
Alignment gi|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin ... 54 3e-07
Alignment gi|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1... 52 1e-06
Alignment gi|XP_851407.1| PREDICTED: similar to serine/cysteine proteinas... 50 4e-06
>ref|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain precursor isoform 2
[Canis familiaris].
Length = 488
Score = 218 bits (556), Expect = 8e-57
Identities = 110/173 (63%), Positives = 124/173 (71%)
Frame = +2
Query: 11 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 190
MVSW+F+ K MK CVFI+K+QA YD+ VDARGHRP DK+REEA
Sbjct: 1 MVSWNFKNFKSMKNLLLLLLCVFIVKSQAHY-YDDTST------VDARGHRPLDKKREEA 53
Query: 191 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 370
PSLRP PPIS GGY+ RP K QKK+ERK PDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 54 PSLRPAPPPISGGGYRARPVKPVASQKKLERKAPDAGGCLHADPDLGVLCPTGCQLQDTL 113
Query: 371 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI 529
+KQERPI+ SI+ELN TFQY+TLLK +WK+RQKQ RDNEN I
Sbjct: 114 VKQERPIRKSIDELNNNVESVSQSSSSTFQYITLLKDMWKNRQKQIRDNENAI 166
>ref|XP_532696.2| PREDICTED: similar to Fibrinogen beta chain precursor isoform 1
[Canis familiaris].
Length = 484
Score = 213 bits (543), Expect = 3e-55
Identities = 106/162 (65%), Positives = 118/162 (72%)
Frame = +2
Query: 44 MKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEAPSLRPVAPPIS 223
MK CVFI+K+QA D DE+ R VDARGHRP DK+REEAPSLRP PPIS
Sbjct: 1 MKNLLLLLLCVFIVKSQAHYYDDTDEEERIVSTVDARGHRPLDKKREEAPSLRPAPPPIS 60
Query: 224 AGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTLLKQERPIKTSI 403
GGY+ RP K QKK+ERK PDAGGCLHADPDLGVLCPTGCQLQDTL+KQERPI+ SI
Sbjct: 61 GGGYRARPVKPVASQKKLERKAPDAGGCLHADPDLGVLCPTGCQLQDTLVKQERPIRKSI 120
Query: 404 EELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI 529
+ELN TFQY+TLLK +WK+RQKQ RDNEN I
Sbjct: 121 DELNNNVESVSQSSSSTFQYITLLKDMWKNRQKQIRDNENAI 162
>ref|XP_533173.2| PREDICTED: similar to Plasma protease C1 inhibitor precursor (C1 Inh)
(C1Inh) [Canis familiaris].
Length = 399
Score = 157 bits (396), Expect = 3e-38
Identities = 91/191 (47%), Positives = 103/191 (53%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
TSLE FY KSS IK M+NSKKYPVAHFTD TLKAK G
Sbjct: 255 TSLEPFYLKSSVIKAFMMNSKKYPVAHFTDSTLKAKPGGF-------------------- 294
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 900
F + L ++ + + I K+EFFDF YDLNL
Sbjct: 295 -----------FGGIGQGLSTS-----------------SEKMVIGMKMEFFDFLYDLNL 326
Query: 901 CGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
CGLTED DLQVS MQHQ MLEL E+G L++FEVQQPFLF+LWDQ H+
Sbjct: 327 CGLTEDIDLQVSAMQHQTMLELTESGVEAAAASAVSVARNLVIFEVQQPFLFLLWDQQHR 386
Query: 1081 FPVFMGRVYDP 1113
FPVFMGRVYDP
Sbjct: 387 FPVFMGRVYDP 397
>ref|XP_854003.1| PREDICTED: similar to Alpha-2-antiplasmin precursor (Alpha-2-plasmin
inhibitor) (Alpha-2-PI) (Alpha-2-AP) [Canis familiaris].
Length = 491
Score = 60.5 bits (145), Expect = 4e-09
Identities = 44/193 (22%), Positives = 91/193 (47%), Gaps = 2/193 (1%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
T ++F+ ++ + V M++++ YP+ F + +V +N+S V+++P +
Sbjct: 250 TQRDSFHLNEQFTVPVDMMHARTYPLRWFLLEQPEIQVAHFPFKNNMSFVVIMPTHFEWN 309
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLN 897
+ + LS + + + + PT +P++ + D++ + +L + +
Sbjct: 310 VSQVLANLSWDILHQPLLREK-----PTKVRLPKLHLNYQLDLVATLSRLGLQELFQAPD 364
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLV-FEVQQPFLFVLWDQH 1074
L G++ D L V+++QHQ+ LEL E G L F V +PFLF + +
Sbjct: 365 LRGIS-DQRLVVTSVQHQSALELSEAGVEAAAATGTAMSRMSLSSFSVNRPFLFFILEDT 423
Query: 1075 HKFPVFMGRVYDP 1113
P+F+G V +P
Sbjct: 424 TSLPLFVGSVKNP 436
>ref|XP_547962.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 4
[Canis familiaris].
Length = 417
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 6/197 (3%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
T+ + +++ ++V M+ + D L V R+ N++ ++P + ++
Sbjct: 223 TTQDFHVDENTVVQVPMMLQDTAHHWYLNDRYLPCSVLRMDYKGNMTAFFILPN--RGKM 280
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLN 897
+ +E+AL+ P N+L + HF P+ I G+ + I+ K+ F D F+ ++
Sbjct: 281 KQVEEALT-PEMLTRWNRLLQKRKLELHF--PKFSISGSYQLNEILPKMGFVDLFSRQVD 337
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL-----VFEVQQPFLFVL 1062
L G+T++ LQVS H+A+LE+ E G V +PF V+
Sbjct: 338 LSGITKEKKLQVSKSFHKAILEVDEVGTQAAAATGIFTTFLSAWHNHRVLWFNRPFFVVI 397
Query: 1063 WDQHHKFPVFMGRVYDP 1113
+ + + +F+G+V +P
Sbjct: 398 FSTNTQSILFLGKVVNP 414
>ref|NP_001071056.2| pigment epithelium-derived factor [Canis lupus familiaris].
Length = 396
Score = 54.7 bits (130), Expect = 2e-07
Identities = 41/195 (21%), Positives = 95/195 (48%), Gaps = 3/195 (1%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
TSLE F+ + +KV M++ K + + D L K+ +L L+ ++S++ +P +
Sbjct: 204 TSLEDFHLDEERTVKVPMMSDPKAILRYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQN 263
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLN 897
L +E++L++ + +L++ + T +P++K+ ++ +++++ +
Sbjct: 264 LTMIEESLTSEFIHDIDRELKTIQAVLT---IPKLKLSYEGEVTKSLQEMKLQSLFDSPD 320
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL--LVFEVQQPFLFVLWDQ 1071
+T ++++ ++H+A E E G L + + +PF+FVL D
Sbjct: 321 FSKIT-GKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPTRLTFPLDYHLNRPFIFVLRDT 379
Query: 1072 HHKFPVFMGRVYDPR 1116
+F+G++ DPR
Sbjct: 380 DTGALLFIGKILDPR 394
>ref|XP_537546.2| PREDICTED: similar to Alpha-1-antichymotrypsin precursor (ACT) [Canis
familiaris].
Length = 421
Score = 54.3 bits (129), Expect = 3e-07
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Frame = +1
Query: 562 SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKAL 741
SKS +KV M+N + V +F D L V LQ + N S + ++P + R+E +E L
Sbjct: 232 SKSRSVKVPMMNLEDVWVPYFRDDALSCTVVELQYTSNDSALFVLPD--EGRMEAVEAML 289
Query: 742 SAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLCGLTED 918
+ + L+ + + +P+ I + ++ ++ +L + FT + +L +T
Sbjct: 290 LPETLRRWTHSLQMRRI--DNLYLPKFSISSSYNLEDVLPQLGVREVFTNEADLSRVTGH 347
Query: 919 ADLQVSTMQHQAMLELMETG------XXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
+L VS + H+ +L++ E G L+ +PFLF + + +
Sbjct: 348 KNLAVSQIVHKTLLDVTELGTEAAAATGSKVVFFSGKIGPLVTVRFNRPFLFCIHHKDTE 407
Query: 1081 FPVFMGRVYDP 1113
+F G+V +P
Sbjct: 408 NILFWGKVTNP 418
>ref|NP_001073578.1| serpin peptidase inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), member 1 [Canis lupus familiaris].
Length = 415
Score = 52.0 bits (123), Expect = 1e-06
Identities = 45/196 (22%), Positives = 92/196 (46%), Gaps = 5/196 (2%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSK-KYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKH 714
T+ E F+ + + +KV M++ + + H TL + V ++ N + ++P +
Sbjct: 224 TTEEDFHVDEHTTVKVPMMSRLGMFDIQHCA--TLSSWVLLMEYVGNATAFFILPD--EG 279
Query: 715 RLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYD 891
+++ +E L+ V + K + +P++ I G D+ ++ K+ F+ +
Sbjct: 280 KMQHLESKLTKEVLAKFLEKRYARS---ASLRLPKLSISGTYDLKSVLSKMGITKVFSAE 336
Query: 892 LNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQ--QPFLFVLW 1065
+L G+TE+ L +S H+A+L + E G + V +PFL ++
Sbjct: 337 ADLSGITEEGPLMLSKGLHKAVLTIDEKGTEAAGATFLEAIPMSMPPSVDFNKPFLIIIV 396
Query: 1066 DQHHKFPVFMGRVYDP 1113
D+ K P+FMG+V +P
Sbjct: 397 DRDTKSPLFMGKVVNP 412
>ref|XP_851407.1| PREDICTED: similar to serine/cysteine proteinase inhibitor, clade I,
member 2 isoform 1 [Canis familiaris].
Length = 422
Score = 50.4 bits (119), Expect = 4e-06
Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Frame = +1
Query: 541 TSLEAFYSKS-SEIKVHMLNSK-KYPVAHFTDPTLKAKVGRLQLSHN-LSLVILVPQTLK 711
T L F K + +K+ M+ + + +F++P++ +V L + SL+I++P
Sbjct: 215 TQLTNFTKKDGAAVKIPMMKALLRTKYGYFSEPSMNYQVLELPYKGDGFSLIIILPAE-D 273
Query: 712 HRLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTY 888
+E+MEK ++A ++++ + +PR K++ D + L + F+
Sbjct: 274 VNIEEMEKRITAHQILKWFSEMQEEE---VEVSLPRFKVEQKLDFKEALYSLNMTEVFSG 330
Query: 889 DLNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLV----FEVQQPFLF 1056
+L G+T+ A++ VS + E+ E G + + F PFLF
Sbjct: 331 GCDLSGITDSAEVFVSQVMQHIFFEINEDGSEAATATGMHIPAIMSLAHNQFIANHPFLF 390
Query: 1057 VLWDQHHKFPVFMGRVYDPRS*DLRG 1134
++ + + +FMGRV +P + ++G
Sbjct: 391 IVKNNPTESILFMGRVTNPDTQKMKG 416
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,596,517
Number of extensions: 1540080
Number of successful extensions: 6383
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6320
Number of HSP's successfully gapped: 10
Length of query: 459
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 353
Effective length of database: 15,340,888
Effective search space: 5415333464
Effective search space used: 5415333464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027466.1| plasma protease C1 inhibitor precursor [Homo... 279 4e-75
Alignment gi|NP_000053.2| plasma protease C1 inhibitor precursor [Homo sa... 279 4e-75
Alignment gi|NP_005132.2| fibrinogen beta chain isoform 1 preproprotein [... 217 2e-56
Alignment gi|NP_001171670.1| fibrinogen beta chain isoform 2 preproprotei... 64 3e-10
Alignment gi|NP_001159393.1| alpha-2-antiplasmin isoform b precursor [Hom... 63 7e-10
Alignment gi|NP_001159392.1| alpha-2-antiplasmin isoform a precursor [Hom... 63 7e-10
Alignment gi|NP_000925.2| alpha-2-antiplasmin isoform a precursor [Homo s... 63 7e-10
Alignment gi|NP_002606.3| pigment epithelium-derived factor precursor [Ho... 57 3e-08
Alignment gi|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens]. 54 4e-07
Alignment gi|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens]. 54 4e-07
>ref|NP_001027466.1| plasma protease C1 inhibitor precursor [Homo sapiens].
Length = 500
Score = 279 bits (714), Expect = 4e-75
Identities = 141/193 (73%), Positives = 155/193 (80%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
T +E F+ K+S IKV M+NSKKYPVAHF D TLKAKVG+LQLSHNLSLVILVPQ LKHRL
Sbjct: 308 TRMEPFHFKNSVIKVPMMNSKKYPVAHFIDQTLKAKVGQLQLSHNLSLVILVPQNLKHRL 367
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 900
EDME+ALS VFKA+M KLE +KF PT +PRIK+ +QDML IMEKLEFFDF+YDLNL
Sbjct: 368 EDMEQALSPSVFKAIMEKLEMSKFQPTLLTLPRIKVTTSQDMLSIMEKLEFFDFSYDLNL 427
Query: 901 CGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
CGLTED DLQVS MQHQ +LEL ETG LLVFEVQQPFLFVLWDQ HK
Sbjct: 428 CGLTEDPDLQVSAMQHQTVLELTETGVEAAAASAISVARTLLVFEVQQPFLFVLWDQQHK 487
Query: 1081 FPVFMGRVYDPRS 1119
FPVFMGRVYDPR+
Sbjct: 488 FPVFMGRVYDPRA 500
>ref|NP_000053.2| plasma protease C1 inhibitor precursor [Homo sapiens].
Length = 500
Score = 279 bits (714), Expect = 4e-75
Identities = 141/193 (73%), Positives = 155/193 (80%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
T +E F+ K+S IKV M+NSKKYPVAHF D TLKAKVG+LQLSHNLSLVILVPQ LKHRL
Sbjct: 308 TRMEPFHFKNSVIKVPMMNSKKYPVAHFIDQTLKAKVGQLQLSHNLSLVILVPQNLKHRL 367
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 900
EDME+ALS VFKA+M KLE +KF PT +PRIK+ +QDML IMEKLEFFDF+YDLNL
Sbjct: 368 EDMEQALSPSVFKAIMEKLEMSKFQPTLLTLPRIKVTTSQDMLSIMEKLEFFDFSYDLNL 427
Query: 901 CGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
CGLTED DLQVS MQHQ +LEL ETG LLVFEVQQPFLFVLWDQ HK
Sbjct: 428 CGLTEDPDLQVSAMQHQTVLELTETGVEAAAASAISVARTLLVFEVQQPFLFVLWDQQHK 487
Query: 1081 FPVFMGRVYDPRS 1119
FPVFMGRVYDPR+
Sbjct: 488 FPVFMGRVYDPRA 500
>ref|NP_005132.2| fibrinogen beta chain isoform 1 preproprotein [Homo sapiens].
Length = 491
Score = 217 bits (553), Expect = 2e-56
Identities = 111/194 (57%), Positives = 130/194 (67%), Gaps = 6/194 (3%)
Frame = +2
Query: 5 QRMVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRRE 184
+RMVSW F KLK MK CVF++K+Q D +E ARGHRP DK+RE
Sbjct: 2 KRMVSWSFHKLKTMKHLLLLLLCVFLVKSQGVNDNEEG-------FFSARGHRPLDKKRE 54
Query: 185 EAPSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQD 364
EAPSLRP PPIS GGY+ RPAK A QKKVERK PDAGGCLHADPDLGVLCPTGCQLQ+
Sbjct: 55 EAPSLRPAPPPISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLCPTGCQLQE 114
Query: 365 TLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI----- 529
LL+QERPI+ S++ELN +FQYM LLK LW+ RQKQ +DNENV+
Sbjct: 115 ALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSS 174
Query: 530 -ITKKQVWRPSTAN 568
+ K Q++ T N
Sbjct: 175 ELEKHQLYIDETVN 188
>ref|NP_001171670.1| fibrinogen beta chain isoform 2 preproprotein [Homo sapiens].
Length = 432
Score = 63.9 bits (154), Expect = 3e-10
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Frame = +2
Query: 341 PTGCQLQDTLLKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNE 520
P + ++ LL+QERPI+ S++ELN +FQYM LLK LW+ RQKQ +DNE
Sbjct: 48 PLDKKREEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNE 107
Query: 521 NVI------ITKKQVWRPSTAN 568
NV+ + K Q++ T N
Sbjct: 108 NVVNEYSSELEKHQLYIDETVN 129
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 5 QRMVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRRE 184
+RMVSW F KLK MK CVF++K+Q D +E ARGHRP DK+RE
Sbjct: 2 KRMVSWSFHKLKTMKHLLLLLLCVFLVKSQGVNDNEEG-------FFSARGHRPLDKKRE 54
Query: 185 EA 190
EA
Sbjct: 55 EA 56
>ref|NP_001159393.1| alpha-2-antiplasmin isoform b precursor [Homo sapiens].
Length = 427
Score = 62.8 bits (151), Expect = 7e-10
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Frame = +1
Query: 577 IKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVF 756
+ V M+ ++ YP+ F + +V +N+S V+LVP + + + LS
Sbjct: 199 VPVEMMQARTYPLRWFLLEQPEIQVAHFPFKNNMSFVVLVPTHFEWNVSQVLANLSWDTL 258
Query: 757 KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVS 936
+ PT +P++ +K D++ + +L + +L G++E + L VS
Sbjct: 259 HPPL-----VWERPTKVRLPKLYLKHQMDLVATLSQLGLQELFQAPDLRGISEQS-LVVS 312
Query: 937 TMQHQAMLELMETG-XXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
+QHQ+ LEL E G L F V +PFLF +++ P+F+G V +P
Sbjct: 313 GVQHQSTLELSEVGVEAAAATSIAMSRMSLSSFSVNRPFLFFIFEDTTGLPLFVGSVRNP 372
>ref|NP_001159392.1| alpha-2-antiplasmin isoform a precursor [Homo sapiens].
Length = 491
Score = 62.8 bits (151), Expect = 7e-10
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Frame = +1
Query: 577 IKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVF 756
+ V M+ ++ YP+ F + +V +N+S V+LVP + + + LS
Sbjct: 263 VPVEMMQARTYPLRWFLLEQPEIQVAHFPFKNNMSFVVLVPTHFEWNVSQVLANLSWDTL 322
Query: 757 KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVS 936
+ PT +P++ +K D++ + +L + +L G++E + L VS
Sbjct: 323 HPPL-----VWERPTKVRLPKLYLKHQMDLVATLSQLGLQELFQAPDLRGISEQS-LVVS 376
Query: 937 TMQHQAMLELMETG-XXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
+QHQ+ LEL E G L F V +PFLF +++ P+F+G V +P
Sbjct: 377 GVQHQSTLELSEVGVEAAAATSIAMSRMSLSSFSVNRPFLFFIFEDTTGLPLFVGSVRNP 436
>ref|NP_000925.2| alpha-2-antiplasmin isoform a precursor [Homo sapiens].
Length = 491
Score = 62.8 bits (151), Expect = 7e-10
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Frame = +1
Query: 577 IKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVF 756
+ V M+ ++ YP+ F + +V +N+S V+LVP + + + LS
Sbjct: 263 VPVEMMQARTYPLRWFLLEQPEIQVAHFPFKNNMSFVVLVPTHFEWNVSQVLANLSWDTL 322
Query: 757 KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVS 936
+ PT +P++ +K D++ + +L + +L G++E + L VS
Sbjct: 323 HPPL-----VWERPTKVRLPKLYLKHQMDLVATLSQLGLQELFQAPDLRGISEQS-LVVS 376
Query: 937 TMQHQAMLELMETG-XXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
+QHQ+ LEL E G L F V +PFLF +++ P+F+G V +P
Sbjct: 377 GVQHQSTLELSEVGVEAAAATSIAMSRMSLSSFSVNRPFLFFIFEDTTGLPLFVGSVRNP 436
>ref|NP_002606.3| pigment epithelium-derived factor precursor [Homo sapiens].
Length = 418
Score = 57.4 bits (137), Expect = 3e-08
Identities = 42/195 (21%), Positives = 95/195 (48%), Gaps = 3/195 (1%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
TSLE FY + ++V M++ K + + D L K+ +L L+ ++S++ +P +
Sbjct: 226 TSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSIIFFLPLKVTQN 285
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLN 897
L +E++L++ + +L++ + T +P++K+ ++ +++++ +
Sbjct: 286 LTLIEESLTSEFIHDIDRELKTVQAVLT---VPKLKLSYEGEVTKSLQEMKLQSLFDSPD 342
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL--LVFEVQQPFLFVLWDQ 1071
+T ++++ ++H+A E E G L + + QPF+FVL D
Sbjct: 343 FSKIT-GKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDT 401
Query: 1072 HHKFPVFMGRVYDPR 1116
+F+G++ DPR
Sbjct: 402 DTGALLFIGKILDPR 416
>ref|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 53.5 bits (127), Expect = 4e-07
Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Frame = +1
Query: 673 NLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLP 852
N + + +P + +L+ +E L+ + + LE+ +P++ I G D+
Sbjct: 271 NATAIFFLPD--EGKLQHLENELTHDI---ITKFLENEDRRSASLHLPKLSITGTYDLKS 325
Query: 853 IMEKLEFFD-FTYDLNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLV 1029
++ +L F+ +L G+TE+A L++S H+A+L + E G +
Sbjct: 326 VLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIP 385
Query: 1030 FEVQ--QPFLFVLWDQHHKFPVFMGRVYDP 1113
EV+ +PF+F++ +Q+ K P+FMG+V +P
Sbjct: 386 PEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 415
>ref|NP_001002235.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 53.5 bits (127), Expect = 4e-07
Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Frame = +1
Query: 673 NLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLP 852
N + + +P + +L+ +E L+ + + LE+ +P++ I G D+
Sbjct: 271 NATAIFFLPD--EGKLQHLENELTHDI---ITKFLENEDRRSASLHLPKLSITGTYDLKS 325
Query: 853 IMEKLEFFD-FTYDLNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLV 1029
++ +L F+ +L G+TE+A L++S H+A+L + E G +
Sbjct: 326 VLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIP 385
Query: 1030 FEVQ--QPFLFVLWDQHHKFPVFMGRVYDP 1113
EV+ +PF+F++ +Q+ K P+FMG+V +P
Sbjct: 386 PEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 415
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,493,593
Number of extensions: 1499107
Number of successful extensions: 6046
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5962
Number of HSP's successfully gapped: 24
Length of query: 459
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,802,980
Effective search space: 5225451940
Effective search space used: 5225451940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033906.2| plasma protease C1 inhibitor precursor [Mus mus... 248 8e-66
Alignment gi|NP_862897.1| fibrinogen beta chain precursor [Mus musculus]. 195 6e-50
Alignment gi|NP_035588.2| serine protease inhibitor A3K precursor [Mus mu... 62 1e-09
Alignment gi|NP_033269.1| alpha-1-antitrypsin 1-1 precursor [Mus musculus]. 62 1e-09
Alignment gi|NP_033273.1| alpha-1-antitrypsin 1-5 precursor [Mus musculus]. 60 3e-09
Alignment gi|NP_033271.1| alpha-1-antitrypsin 1-3 [Mus musculus]. 60 3e-09
Alignment gi|NP_001186869.1| serine (or cysteine) peptidase inhibitor, cl... 60 5e-09
Alignment gi|NP_033270.3| alpha-1-antitrypsin 1-2 precursor [Mus musculus]. 60 5e-09
Alignment gi|NP_033279.2| serine protease inhibitor A3M precursor [Mus mu... 60 5e-09
Alignment gi|NP_033272.1| alpha-1-antitrypsin 1-4 precursor [Mus musculus]. 59 1e-08
>ref|NP_033906.2| plasma protease C1 inhibitor precursor [Mus musculus].
Length = 504
Score = 248 bits (633), Expect = 8e-66
Identities = 122/187 (65%), Positives = 146/187 (78%)
Frame = +1
Query: 556 FYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEK 735
F+ K+S IKV M++S KYPVA F D TLKAKVG+LQLSHNLS VI+VP KH+L+D+EK
Sbjct: 317 FFYKNSMIKVPMMSSVKYPVAQFDDHTLKAKVGQLQLSHNLSFVIVVPVFPKHQLKDVEK 376
Query: 736 ALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNLCGLTE 915
AL+ VFKA+M KLE +KF PT+ MP IK+K +QDML +MEKLEFFDFTYDLNLCGLTE
Sbjct: 377 ALNPTVFKAIMKKLELSKFLPTYLTMPHIKVKSSQDMLSVMEKLEFFDFTYDLNLCGLTE 436
Query: 916 DADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHKFPVFM 1095
D DLQVS M+H+ +LEL E+G L +FEVQ+PFLF+LWDQ H+FPVFM
Sbjct: 437 DPDLQVSAMKHETVLELTESGVEAAAASAISFGRSLPIFEVQRPFLFLLWDQQHRFPVFM 496
Query: 1096 GRVYDPR 1116
GRVYDPR
Sbjct: 497 GRVYDPR 503
>ref|NP_862897.1| fibrinogen beta chain precursor [Mus musculus].
Length = 481
Score = 195 bits (496), Expect = 6e-50
Identities = 97/154 (62%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
Frame = +2
Query: 71 CVFIIKAQAAID-YDEDEDGRPKVHVDARGHRPYDKRREEAPSLRPVAPPISAGGYQPRP 247
CVF ++ QAA D YDE D +DARGHRP D+R+EE PSLRP PPIS GGY+ RP
Sbjct: 11 CVFSVQTQAADDDYDEPTDS-----LDARGHRPVDRRKEEPPSLRPAPPPISGGGYRARP 65
Query: 248 AKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTLLKQERPIKTSIEELNXXXX 427
AK QKKVER+PPDAGGCLHAD D+GVLCPTGC LQ TLL QERPIK+SI ELN
Sbjct: 66 AKATANQKKVERRPPDAGGCLHADTDMGVLCPTGCTLQQTLLNQERPIKSSIAELNNNIQ 125
Query: 428 XXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI 529
TFQY+TLLK +WK +Q Q ++NENVI
Sbjct: 126 SVSDTSSVTFQYLTLLKDMWKKKQAQVKENENVI 159
>ref|NP_035588.2| serine protease inhibitor A3K precursor [Mus musculus].
Length = 418
Score = 62.0 bits (149), Expect = 1e-09
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 7/196 (3%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E + + +KV M+ K HF D L V L+ + N S ++++P + R++ +
Sbjct: 229 EFYLDEKRSVKVPMMKMKLLTARHFRDEELSCSVLELKYTGNASALLILPD--QGRMQQV 286
Query: 730 EKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGN----QDMLPIMEKLEFFDFTYDLN 897
E +L + L S++ + +P+ I + +D+LP M E F T +
Sbjct: 287 EASLQPETLRKWRKTLFSSQIEELN--LPKFSIASDYRLEEDVLPEMGIKEVF--TEQAD 342
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEV---QQPFLFVLWD 1068
L G+TE L VS + H+A+L++ ETG V +PFL V++
Sbjct: 343 LSGITEAKKLSVSQVVHKAVLDVAETGTEAAAATGVIGGIRKAVLPAVCFNRPFLIVIYH 402
Query: 1069 QHHKFPVFMGRVYDPR 1116
+ +FM +V +P+
Sbjct: 403 TSAQSILFMAKVNNPK 418
>ref|NP_033269.1| alpha-1-antitrypsin 1-1 precursor [Mus musculus].
Length = 413
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E +S+ +KV M+ H TL + V + + N + V L+P K ++ +
Sbjct: 225 EFHVDESTTVKVPMMTLSGMLHVHHCS-TLSSWVLLMDYAGNATAVFLLPDDGK--MQHL 281
Query: 730 EKALSAPVF-KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLC 903
E+ LS + K ++N+ + HF PR+ I G ++ +M L F +L
Sbjct: 282 EQTLSKELISKFLLNRRR--RLAQIHF--PRLSISGEYNLKTLMSPLGITRIFNNGADLS 337
Query: 904 GLTED-ADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQH 1074
G+TE+ A L++S H+A+L + ETG + + PFLF+++++H
Sbjct: 338 GITEENAPLKLSQAVHKAVLTIDETGTEAAAVTVLQMVPMSMPPILRFDHPFLFIIFEEH 397
Query: 1075 HKFPVFMGRVYDP 1113
+ P+F+G+V DP
Sbjct: 398 TQSPIFLGKVVDP 410
>ref|NP_033273.1| alpha-1-antitrypsin 1-5 precursor [Mus musculus].
Length = 413
Score = 60.5 bits (145), Expect = 3e-09
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E +S+ +KV M+ H TL + V + + N + V L+P K ++ +
Sbjct: 225 EFHVDESTTVKVPMMTLSGMLDVHHCS-TLSSWVLLMDYAGNATAVFLLPDDGK--MQHL 281
Query: 730 EKALSAPVF-KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLC 903
E+ L+ + K ++N+ +PR+ I GN ++ +M L F +L
Sbjct: 282 EQTLNKELISKFLLNRRRRL----AQIHIPRLSISGNYNLETLMSPLGITRIFNSGADLS 337
Query: 904 GLTED-ADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQH 1074
G+TE+ A L++S H+A+L + ETG + + +PFLF+++++H
Sbjct: 338 GITEENAPLKLSQAVHKAVLTIDETGTEAAAATVLQGGFLSMPPILHFNRPFLFIIFEEH 397
Query: 1075 HKFPVFMGRVYDP 1113
+ P+F+G+V DP
Sbjct: 398 SQSPLFVGKVVDP 410
>ref|NP_033271.1| alpha-1-antitrypsin 1-3 [Mus musculus].
Length = 413
Score = 60.5 bits (145), Expect = 3e-09
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 4/192 (2%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E +S+ +KV M+ H TL + V + + N + V L+P K ++ +
Sbjct: 225 EFHVDESTTVKVPMMTLSGMLDVHHCS-TLSSWVLLMDYAGNATAVFLLPDDGK--MQHL 281
Query: 730 EKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLCG 906
E+ LS + + K + HF PR+ I G ++ +M L F +L G
Sbjct: 282 EQTLSKELISKFLLK-RPRRLAQIHF--PRLSISGEYNLKTLMSPLGITRIFNNGADLSG 338
Query: 907 LTED-ADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQHH 1077
+TE+ A L++S H+A+L + ETG + + PFLF+++++H
Sbjct: 339 ITEENAPLKLSQAVHKAVLTMDETGTEAAAATVLLAVPYSMPPIVRFDHPFLFIIFEEHT 398
Query: 1078 KFPVFMGRVYDP 1113
+ P+F+G+V DP
Sbjct: 399 QSPLFVGKVVDP 410
>ref|NP_001186869.1| serine (or cysteine) peptidase inhibitor, clade A, member 3I [Mus
musculus].
Length = 408
Score = 59.7 bits (143), Expect = 5e-09
Identities = 43/195 (22%), Positives = 90/195 (46%), Gaps = 8/195 (4%)
Frame = +1
Query: 556 FYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDMEK 735
+ + +KV M+ ++ +F D L V L+ + N S + ++P + +++ +E
Sbjct: 220 YLDEKRSVKVPMMKIEELTTPYFRDDELSCSVVELKYTGNASALFILPD--QGKMQQVET 277
Query: 736 ALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGN---QDMLPIMEKLEFFDFTYDLNLCG 906
+L + N L+ ++ H +P+ I + + +LP++ E F DL+
Sbjct: 278 SLHPETLRKWKNSLKPSRISELH--LPKFSISNDYSLEHVLPVLGIREVFSMQADLS--A 333
Query: 907 LTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL-----LVFEVQQPFLFVLWDQ 1071
+T DL+VS + H+A+L++ ETG + ++PFL ++ D
Sbjct: 334 ITGTMDLRVSQVVHKAVLDVTETGTEAAAATGVKVNLRCGKIYSMTIYFKRPFLIIISDI 393
Query: 1072 HHKFPVFMGRVYDPR 1116
+ +FM +V +P+
Sbjct: 394 NTHIALFMAKVTNPK 408
>ref|NP_033270.3| alpha-1-antitrypsin 1-2 precursor [Mus musculus].
Length = 413
Score = 59.7 bits (143), Expect = 5e-09
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 5/193 (2%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E KS+ +KV M+ H L + V + + N S V L+P+ K ++ +
Sbjct: 225 EFHVDKSTTVKVPMMMLSGMLDVHHCS-ILSSWVLLMDYAGNASAVFLLPEDGK--MQHL 281
Query: 730 EKALSAPVF-KAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLC 903
E+ L+ + K ++N+ +PR+ I G+ ++ +M L F +L
Sbjct: 282 EQTLNKELISKILLNRRRRL----VQIHIPRLSISGDYNLKTLMSPLGITRIFNNGADLS 337
Query: 904 GLTED-ADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQH 1074
G+TE+ A L++S H+A+L + ETG + + PFLF+++++H
Sbjct: 338 GITEENAPLKLSKAVHKAVLTIDETGTEAAAATVFEAVPMSMPPILRFDHPFLFIIFEEH 397
Query: 1075 HKFPVFMGRVYDP 1113
+ P+F+G+V DP
Sbjct: 398 TQSPIFVGKVVDP 410
>ref|NP_033279.2| serine protease inhibitor A3M precursor [Mus musculus].
Length = 418
Score = 59.7 bits (143), Expect = 5e-09
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 6/195 (3%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E + + +KV M+ K HF D L V L+ + N S + ++P + R++ +
Sbjct: 228 EFYLDEKRSVKVPMMKMKFLTTRHFRDEELSCSVLELKYTGNASALFILPD--QGRMQQV 285
Query: 730 EKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLCG 906
E +L + L++ K + +P+ I + ++ I+ +L + F+ +L G
Sbjct: 286 EASLQPETLRKWWKSLKTRKIGELY--LPKFSISTDYNLKDILPELGIKEIFSKQADLSG 343
Query: 907 LTEDADLQVSTMQHQAMLELMETG-----XXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQ 1071
+T DL VS + H+A+L++ ETG + + +PFL V+
Sbjct: 344 ITGTKDLSVSQVVHKAVLDVAETGTEAAAATGFIFGFRSRRLQTMTVQFNRPFLMVISHT 403
Query: 1072 HHKFPVFMGRVYDPR 1116
+ +FM +V +P+
Sbjct: 404 GVQTTLFMAKVTNPK 418
>ref|NP_033272.1| alpha-1-antitrypsin 1-4 precursor [Mus musculus].
Length = 413
Score = 58.5 bits (140), Expect = 1e-08
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 5/193 (2%)
Frame = +1
Query: 550 EAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRLEDM 729
E +S+ +KV M+ H L + V + + N + V L+P K ++ +
Sbjct: 225 EFHVDESTTVKVPMMTLSGMLDVHHCS-MLSSWVLLMDYAGNTTAVFLLPDDGK--MQHL 281
Query: 730 EKALSAPVFKA-VMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLNLC 903
E+ L+ + ++N+ S +PR+ I GN ++ +M L F +L
Sbjct: 282 EQTLNKELISQFLLNRRRSD----AQIHIPRLSISGNYNLKTLMSPLGITRIFNNGADLS 337
Query: 904 GLTED-ADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLL--VFEVQQPFLFVLWDQH 1074
G+TE+ A L++S H+A+L + ETG + + PFLF+++++H
Sbjct: 338 GITEENAPLKLSKAVHKAVLTIDETGTEAAAATVLQVATYSMPPIVRFDHPFLFIIFEEH 397
Query: 1075 HKFPVFMGRVYDP 1113
+ P+F+G+V DP
Sbjct: 398 TQSPIFVGKVVDP 410
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,290,993
Number of extensions: 1254922
Number of successful extensions: 4821
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4736
Number of HSP's successfully gapped: 22
Length of query: 459
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 354
Effective length of database: 12,463,779
Effective search space: 4412177766
Effective search space used: 4412177766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116666.1| plasma protease C1 inhibitor [Sus scrofa]. 355 4e-98
Alignment gi|XP_003129176.1| PREDICTED: fibrinogen beta chain isoform 1 [... 318 3e-87
Alignment gi|XP_003129177.1| PREDICTED: fibrinogen beta chain isoform 2 [... 296 2e-80
Alignment gi|XP_003357036.1| PREDICTED: fibrinogen beta chain [Sus scrofa]. 129 4e-30
Alignment gi|NP_001072130.1| pigment epithelium-derived factor [Sus scrof... 58 1e-08
Alignment gi|XP_003361701.1| PREDICTED: alpha-2-antiplasmin-like, partial... 58 1e-08
Alignment gi|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa]. 56 5e-08
Alignment gi|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa]. 56 5e-08
Alignment gi|XP_003356839.1| PREDICTED: alpha-1-antitrypsin-like [Sus scr... 55 9e-08
Alignment gi|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa]. 52 1e-06
>ref|NP_001116666.1| plasma protease C1 inhibitor [Sus scrofa].
Length = 492
Score = 355 bits (910), Expect = 4e-98
Identities = 178/193 (92%), Positives = 178/193 (92%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
TSLEAFYSKSSEIKVHML SKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL
Sbjct: 300 TSLEAFYSKSSEIKVHMLTSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 359
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 900
EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL
Sbjct: 360 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLNL 419
Query: 901 CGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHHK 1080
CGLTEDADLQVSTMQHQAMLELMETG LLVFEVQQPFLFVLWDQHHK
Sbjct: 420 CGLTEDADLQVSTMQHQAMLELMETGVEVAAASAFSVARSLLVFEVQQPFLFVLWDQHHK 479
Query: 1081 FPVFMGRVYDPRS 1119
FPVFMGRVYDPRS
Sbjct: 480 FPVFMGRVYDPRS 492
>ref|XP_003129176.1| PREDICTED: fibrinogen beta chain isoform 1 [Sus scrofa].
Length = 495
Score = 318 bits (816), Expect = 3e-87
Identities = 159/192 (82%), Positives = 162/192 (84%), Gaps = 6/192 (3%)
Frame = +2
Query: 11 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 190
MVSWDFQKLKIMKP CVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 60
Query: 191 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 370
PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 61 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 120
Query: 371 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI------I 532
LKQERPIKTSIEELN TFQYMTLLKRLWKDRQKQRRDNENVI +
Sbjct: 121 LKQERPIKTSIEELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 180
Query: 533 TKKQVWRPSTAN 568
K Q++ T N
Sbjct: 181 EKHQLYIDETVN 192
>ref|XP_003129177.1| PREDICTED: fibrinogen beta chain isoform 2 [Sus scrofa].
Length = 488
Score = 296 bits (758), Expect = 2e-80
Identities = 152/192 (79%), Positives = 155/192 (80%), Gaps = 6/192 (3%)
Frame = +2
Query: 11 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 190
MVSWDFQKLKIMKP CVFIIKAQAAIDYDE VHVDARGHRPYDKRREEA
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDE-------VHVDARGHRPYDKRREEA 53
Query: 191 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 370
PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL
Sbjct: 54 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 113
Query: 371 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI------I 532
LKQERPIKTSIEELN TFQYMTLLKRLWKDRQKQRRDNENVI +
Sbjct: 114 LKQERPIKTSIEELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 173
Query: 533 TKKQVWRPSTAN 568
K Q++ T N
Sbjct: 174 EKHQLYIDETVN 185
>ref|XP_003357036.1| PREDICTED: fibrinogen beta chain [Sus scrofa].
Length = 432
Score = 129 bits (324), Expect = 4e-30
Identities = 87/192 (45%), Positives = 92/192 (47%), Gaps = 6/192 (3%)
Frame = +2
Query: 11 MVSWDFQKLKIMKPXXXXXXCVFIIKAQAAIDYDEDEDGRPKVHVDARGHRPYDKRREEA 190
MVSWDFQKLKIMKP CVFIIKAQAAIDYDE VHVDARGHRPYDKRREEA
Sbjct: 1 MVSWDFQKLKIMKPLLLLLLCVFIIKAQAAIDYDE-------VHVDARGHRPYDKRREEA 53
Query: 191 PSLRPVAPPISAGGYQPRPAKVAIGQKKVERKPPDAGGCLHADPDLGVLCPTGCQLQDTL 370
P+ Q RP K +I
Sbjct: 54 PNTLL---------KQERPIKTSI------------------------------------ 68
Query: 371 LKQERPIKTSIEELNXXXXXXXXXXXXTFQYMTLLKRLWKDRQKQRRDNENVI------I 532
EELN TFQYMTLLKRLWKDRQKQRRDNENVI +
Sbjct: 69 -----------EELNSNIDSVSQSSSSTFQYMTLLKRLWKDRQKQRRDNENVINEFSSEL 117
Query: 533 TKKQVWRPSTAN 568
K Q++ T N
Sbjct: 118 EKHQLYIDETVN 129
>ref|NP_001072130.1| pigment epithelium-derived factor [Sus scrofa].
Length = 413
Score = 58.2 bits (139), Expect = 1e-08
Identities = 43/194 (22%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
TSLE F+ + +KV M++ K + + D L K+ +L L+ ++S++ +P +
Sbjct: 224 TSLEDFHLDEERTVKVPMMSDPKAVLRYGLDSDLNCKIAQLPLTGSMSIIFFLPLKVTQN 283
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFDFTYDLN 897
L +E++L++ + +L++ + T +P++K+ ++ +++L+ +
Sbjct: 284 LTMIEESLTSEFIHDIDRELKTVQAVLT---VPKLKLSYEGELTKSVQELKLQSLFDSPD 340
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQQPFLFVLWDQHH 1077
+T ++++ ++H+ E E G L + + QPF+FVL D
Sbjct: 341 FSKIT-GKPIKLTQVEHRIGFEWNEDGGSATSSPGPRLTFPL-DYHLNQPFIFVLRDTDT 398
Query: 1078 KFPVFMGRVYDPRS 1119
+F+G++ DPRS
Sbjct: 399 GALLFIGKILDPRS 412
>ref|XP_003361701.1| PREDICTED: alpha-2-antiplasmin-like, partial [Sus scrofa].
Length = 378
Score = 58.2 bits (139), Expect = 1e-08
Identities = 39/156 (25%), Positives = 73/156 (46%)
Frame = +1
Query: 646 KVGRLQLSHNLSLVILVPQTLKHRLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIK 825
+V +N+S V++VP + + + LS + + + PT +P++
Sbjct: 173 RVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRER-----PTKVQLPKLH 227
Query: 826 IKGNQDMLPIMEKLEFFDFTYDLNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXX 1005
+K D++ + +L +L G+++++ L VS++QHQ+ LEL E G
Sbjct: 228 LKYQLDLVATLSQLGLQGLFQAPDLRGISDES-LVVSSVQHQSTLELSEAGVEAAAATST 286
Query: 1006 XXXXXLLVFEVQQPFLFVLWDQHHKFPVFMGRVYDP 1113
L F V +PFLF + + P+F+G V +P
Sbjct: 287 AMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNP 322
>ref|XP_001928879.1| PREDICTED: serpin A3-6 [Sus scrofa].
Length = 423
Score = 55.8 bits (133), Expect = 5e-08
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
T + + SK+ +KV M+ K V +F D L V L + N S + ++P R+
Sbjct: 230 TEADFYVSKNKTVKVPMMGIKNLTVPYFRDEELACTVVELPYTSNDSTLFILPDD--GRM 287
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLN 897
+E L + + + L+ + H +PR I + + I+ +L + F+ + +
Sbjct: 288 AAVEANLLPEMLRRWRDSLQPRRIDALH--LPRFSISSDYKLEEILPRLGIKEIFSAEAD 345
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL---LVFEVQQPFLFVLWD 1068
L G+T+ L VS + H A+L++ E G + PFLF
Sbjct: 346 LSGITDTKPLYVSQVVHSAVLDVDEEGTEGAASTGVVIERKSFENFIVRFDSPFLFATVL 405
Query: 1069 QHHKFPVFMGRVYDP 1113
+ + +F+G+V +P
Sbjct: 406 RDTQSIIFLGKVVNP 420
>ref|XP_001928857.3| PREDICTED: serpin A3-8 [Sus scrofa].
Length = 423
Score = 55.8 bits (133), Expect = 5e-08
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Frame = +1
Query: 541 TSLEAFYSKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHRL 720
T + SK+ ++V M+ + +F D L V L + N S + ++P R+
Sbjct: 230 TEADFHVSKNRTVRVPMMGISGRTLPYFRDEELACTVVELPYTSNDSALFILPDD--GRM 287
Query: 721 EDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTYDLN 897
+E L + + L + H +PR + G+ + I+ L F++ +
Sbjct: 288 AAVEAQLLPETLRRWRDSLHQRRITALH--LPRFSVSGDYTLHDILPHLGIKKVFSHQAD 345
Query: 898 LCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVF---EVQQPFLFVLWD 1068
L G+T+ A L+VS + H+A+L++ E G + F +PFLF +
Sbjct: 346 LSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIH 405
Query: 1069 QHHKFPVFMGRVYDP 1113
+ + +F G+V DP
Sbjct: 406 KDTQSIIFSGKVTDP 420
>ref|XP_003356839.1| PREDICTED: alpha-1-antitrypsin-like [Sus scrofa].
Length = 407
Score = 55.1 bits (131), Expect = 9e-08
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Frame = +1
Query: 553 AFYSKSSEIKVHMLNSKKYPVAH-------FTDPTLKAKVGRLQLSHNLSLVILVPQTLK 711
A+ S + V+ + + P+ H + D ++ V L ++ ++L+P+ +
Sbjct: 212 AYRSVIEDFHVNQTVTIRVPMMHRLGRCKVYWDHVVRCWVVLLHFQGRIATLLLLPK--Q 269
Query: 712 HRLEDMEKALSAPVFKAVMNKLESTKFYPTHFMMPRIKIKGNQDMLPIMEKLEFFD-FTY 888
+LE +EK LS + + L S + MPR I G D+ ++ L F+
Sbjct: 270 GKLEWLEKKLSEKLLAKYLKFLHSRVI---NLRMPRFVISGTYDLKSLLGNLGITKVFSD 326
Query: 889 DLNLCGLTEDAD-LQVSTMQHQAMLELMETGXXXXXXXXXXXXXXL--LVFEVQQPFLFV 1059
+ +L G+TE+ L++S H+A+L+L E G PFL +
Sbjct: 327 EADLSGVTEEQQPLKLSKALHKAVLDLSENGTDHGGDILSKDTRWSNHQTISFNMPFLIL 386
Query: 1060 LWDQHHKFPVFMGRVYDP 1113
+ D++ P+FMGRV +P
Sbjct: 387 IKDENTNIPLFMGRVVNP 404
>ref|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa].
Length = 421
Score = 51.6 bits (122), Expect = 1e-06
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 6/197 (3%)
Frame = +1
Query: 541 TSLEAFY-SKSSEIKVHMLNSKKYPVAHFTDPTLKAKVGRLQLSHNLSLVILVPQTLKHR 717
T+ E F+ + + +KV M+N H D + ++ + IL Q H+
Sbjct: 230 TTEEDFHVDEETTVKVPMMNRLGMFDLHHCDKLSSWVLLMDYVATATAFFILPDQGKLHQ 289
Query: 718 LEDMEKALSAPVFKAVMNKLESTKFYPT--HFMMPRIKIKGNQDMLPIMEKLEFFD-FTY 888
LEDM + K + K K YP+ + +P++ I G D+ ++ L F+
Sbjct: 290 LEDM-------LTKEIRAKFLE-KRYPSSANLHLPKLTISGTYDLKSLLGNLGITKVFSD 341
Query: 889 DLNLCGLTEDADLQVSTMQHQAMLELMETGXXXXXXXXXXXXXXLLVFEVQ--QPFLFVL 1062
+ +L G+TE+ L++S H+A+L + E G + V+ +PFLF++
Sbjct: 342 EADLSGVTEEQPLKLSKALHRAVLTIDEKGTEATGATILEAIPMSIPPNVKFNKPFLFLI 401
Query: 1063 WDQHHKFPVFMGRVYDP 1113
+D K +FMG+V +P
Sbjct: 402 YDTKTKAVLFMGKVMNP 418
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,102,108
Number of extensions: 1019396
Number of successful extensions: 4154
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4101
Number of HSP's successfully gapped: 15
Length of query: 459
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 357
Effective length of database: 8,804,438
Effective search space: 3143184366
Effective search space used: 3143184366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007024
(1379 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 926 0.0
Sscrofa_Chr08 389 e-105
>Sscrofa_Chr02
|| Length = 162569375
Score = 926 bits (467), Expect = 0.0
Identities = 477/479 (99%), Gaps = 1/479 (0%)
Strand = Plus / Minus
Query: 868 gaattctttgactttacctacgacctcaacctgtgtgggctgacagaggacgcagatctg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12958175 gaattctttgactttacctacgacctcaacctgtgtgggctgacagaggacgcagatctg 12958116
Query: 928 caggtttctacgatgcagcaccaggccatgctagagctgatggagacgggggtggaggtg 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12958115 caggtttctacgatgcagcaccaggccatgctagagctgatggagacgggggtggaggtg 12958056
Query: 988 gcagcagcctcggccttctctgtggcccgcagtttgctggtctttgaagtgcagcagccc 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12958055 gcagcagcctcggccttctctgtggcccgcagtttgctggtctttgaagtgcagcagccc 12957996
Query: 1048 ttccttttcgtgctctgggaccagcatcacaagttccctgtcttcatggggcgggtgtat 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12957995 ttccttttcgtgctctgggaccagcatcacaagttccctgtcttcatggggcgggtgtat 12957936
Query: 1108 gaccccaggtcctgagacctgcgg-ggggccaactagggcaagtccttcccctctggctt 1166
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12957935 gaccccaggtcctgagacctgcgggggggccaactagggcaagtccttcccctctggctt 12957876
Query: 1167 cagctctcttggttgcagctctggacttgcccccagccacctcccgcctcaggtctgccc 1226
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 12957875 cagctctcttggttgcagctctggacttgcccccagccaccttccgcctcaggtctgccc 12957816
Query: 1227 tccacctgaaaggctccccgggggtctggtgaggggacctgcttctaccatcccttccct 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12957815 tccacctgaaaggctccccgggggtctggtgaggggacctgcttctaccatcccttccct 12957756
Query: 1287 gtgactctctaaagcactttttgcagcttcctctggtacaaatacagcagactctacaa 1345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12957755 gtgactctctaaagcactttttgcagcttcctctggtacaaatacagcagactctacaa 12957697
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Minus
Query: 647 aggtgggccgactgcagctgtctcacaacctgagcttggtgatcctggtgccccagacct 706
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12959514 aggtgggtcgactgcagctgtctcacaacctgagcttggtgatcctggtgccccagacct 12959455
Query: 707 tgaaacaccgtctggaagacatggagaaggccctcagtgcccctgtcttcaaggctgtca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12959454 tgaaacaccgtctggaagacatggagaaggccctcagtgcccctgtcttcaaggctgtca 12959395
Query: 767 tgaataagctggagtcgaccaagttctatcccactcacttcatgatgcctcgcatcaaaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12959394 tgaataagctggagtcgaccaagttctatcccactcacttcatgatgcctcgcatcaaaa 12959335
Query: 827 taaagggcaaccaggacatgctgccaatcatggagaaattgg 868
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12959334 taaagggcaaccaggacatgctgccaatcatggagaaattgg 12959293
Score = 208 bits (105), Expect = 6e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 542 caagtttggaggccttctacagcaaatcctctgagataaaagtgcacatgctgaatagca 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12965543 caagtttggaggccttctacagcaaatcctctgagataaaagtgcacatgctgactagca 12965484
Query: 602 agaagtaccctgtggcccatttcacagacccaactttgaaggccaaggt 650
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12965483 agaagtaccctgtggcccatttcacagacccaactttgaaggccaaggt 12965435
>Sscrofa_Chr08
|| Length = 148491826
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 134 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958958 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 78958899
Query: 194 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958898 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 78958839
Query: 254 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958838 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 78958779
Query: 314 gctgatccggacctgg 329
||||||||||||||||
Sbjct: 78958778 gctgatccggacctgg 78958763
Score = 373 bits (188), Expect = e-100
Identities = 195/196 (99%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 134 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79090749 aaggttcatgtggatgcccgtggtcatcggccctatgacaagaggagggaagaggctccc 79090690
Query: 194 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79090689 agcctgagacctgtcgcccctcccatcagtgcaggtggctatcaacctcgtccagccaaa 79090630
Query: 254 gtagctattggccagaagaaagtggagagaaaaccccctgatgctgggggctgcctgcat 313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 79090629 gtagctattggccagaagaaagtggagagaaaaccccctgatgct-ggggctgcctgcat 79090571
Query: 314 gctgatccggacctgg 329
||||||||||||||||
Sbjct: 79090570 gctgatccggacctgg 79090555
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 328 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78958019 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 78957960
Query: 388 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78957959 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 78957900
Query: 448 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78957899 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 78957840
Query: 508 aagag 512
|||||
Sbjct: 78957839 aagag 78957835
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 328 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089811 gggtgtgttgtgtcctacaggatgtcagttgcaagatactctgctgaaacaggaaagacc 79089752
Query: 388 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089751 aatcaaaaccagtatagaagagctgaatagtaacatagactctgtttcccagtcctcttc 79089692
Query: 448 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79089691 ttccacctttcagtacatgactctgctgaaacgcctgtggaaagacaggcagaagcaaag 79089632
Query: 508 aagag 512
|||||
Sbjct: 79089631 aagag 79089627
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 1 caagcaaaggatggtttcttgggacttccaaaaacttaaaatcatgaaacctctattact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78961888 caagcaaaggatggtttcttgggacttccaaaaacttaaaatcatgaaacctctattact 78961829
Query: 61 gctactattgtgtgtttttattattaaggcccaagctgccattgactacgatgagg 116
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 78961828 gctactattgtgtgtttttataattaaggcccaagctgccattgactacgatgagg 78961773
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 1 caagcaaaggatggtttcttgggacttccaaaaacttaaaatcatgaaacctctattact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79093679 caagcaaaggatggtttcttgggacttccaaaaacttaaaatcatgaaacctctattact 79093620
Query: 61 gctactattgtgtgtttttattattaaggcccaagctgccattgactacgatgagg 116
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 79093619 gctactattgtgtgtttttataattaaggcccaagctgccattgactacgatgagg 79093564
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,020,319
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 9
Length of query: 1379
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1358
Effective length of database: 2,808,413,156
Effective search space: 3813825065848
Effective search space used: 3813825065848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)