Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 368 e-102
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 301 6e-82
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 299 3e-81
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 282 4e-76
Alignment gi|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos tau... 174 1e-43
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 170 3e-42
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 170 3e-42
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 152 6e-37
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 152 6e-37
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 152 6e-37
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 368 bits (945), Expect = e-102
Identities = 206/284 (72%), Positives = 209/284 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLK TEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 301 bits (772), Expect = 6e-82
Identities = 169/284 (59%), Positives = 193/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 299 bits (766), Expect = 3e-81
Identities = 170/284 (59%), Positives = 191/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 282 bits (722), Expect = 4e-76
Identities = 159/284 (55%), Positives = 186/284 (65%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos taurus].
Length = 125
Score = 174 bits (441), Expect = 1e-43
Identities = 89/105 (84%), Positives = 99/105 (94%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQER 105
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 170 bits (430), Expect = 3e-42
Identities = 101/237 (42%), Positives = 133/237 (56%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 741
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEI 189
Query: 742 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 190 KILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 170 bits (430), Expect = 3e-42
Identities = 101/237 (42%), Positives = 133/237 (56%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 741
ARKLVI ++E +C +++E++K + NL
Sbjct: 130 ARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEI 189
Query: 742 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 190 KILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ ++ D E +RAE AES + +E+ K +++ L L + + DKY
Sbjct: 127 EEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYK 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 152 bits (384), Expect = 6e-37
Identities = 96/234 (41%), Positives = 124/234 (52%)
Frame = +1
Query: 211 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 390
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 570
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 571 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 750
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 751 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + L+ TL DLN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 152 bits (384), Expect = 6e-37
Identities = 96/234 (41%), Positives = 124/234 (52%)
Frame = +1
Query: 211 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 390
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 570
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 571 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 750
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 751 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + L+ TL DLN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 152 bits (384), Expect = 6e-37
Identities = 96/234 (41%), Positives = 124/234 (52%)
Frame = +1
Query: 211 KLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXX 390
K++ + + D E K Q+K+E AE +V +LNRRIQLVEEEL+RAQER
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARK 570
R MKVIEN+A+KDEEKME+QE+QLKEAKHIAEEA RKYEEVARK
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARK 132
Query: 571 LVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXX 750
LVI ++E +C + E+ + + +L
Sbjct: 133 LVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 751 SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + L+ TL DLN
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQTLLDLN 246
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,806,273
Number of extensions: 528626
Number of successful extensions: 4390
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4040
Number of HSP's successfully gapped: 31
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 371 e-103
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 350 2e-96
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 344 1e-94
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 313 2e-85
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 311 6e-85
Alignment gi|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isof... 304 1e-82
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 302 4e-82
Alignment gi|XP_865583.1| PREDICTED: similar to Tropomyosin alpha 3 chain... 301 6e-82
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 301 8e-82
Alignment gi|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (T... 301 8e-82
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 371 bits (953), Expect = e-103
Identities = 207/284 (72%), Positives = 210/284 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 350 bits (898), Expect = 2e-96
Identities = 207/328 (63%), Positives = 210/328 (64%), Gaps = 44/328 (13%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ---------------------- 180
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQLDLEAKSAFITYFLREVREKKS 60
Query: 181 ----------------------VEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELSEK 294
VEEELTHLQKKLKGTEDELDKYSENLKDAQEKLEL+EK
Sbjct: 61 ERDAGNQAWHKGLLTRPPVCPQVEEELTHLQKKLKGTEDELDKYSENLKDAQEKLELTEK 120
Query: 295 KASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMK 474
KASDAEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMK
Sbjct: 121 KASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMK 180
Query: 475 DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEE 654
DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSELKCGDLEEE
Sbjct: 181 DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEE 240
Query: 655 LKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDL 834
LKNVTNNL SDKLK KLEKTIDDL
Sbjct: 241 LKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDL 300
Query: 835 EEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
EEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 301 EEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris].
Length = 284
Score = 344 bits (882), Expect = 1e-94
Identities = 194/284 (68%), Positives = 201/284 (70%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SENLKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE++L K K ++ LD LND+ +
Sbjct: 241 FAERTVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSL 284
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 313 bits (803), Expect = 2e-85
Identities = 176/282 (62%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLEE L AKE+NV QTLD TL +LN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 311 bits (798), Expect = 6e-85
Identities = 175/282 (62%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis
familiaris].
Length = 285
Score = 304 bits (778), Expect = 1e-82
Identities = 171/282 (60%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 242 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 283
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris].
Length = 284
Score = 302 bits (774), Expect = 4e-82
Identities = 171/284 (60%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_865583.1| PREDICTED: similar to Tropomyosin alpha 3 chain (Tropomyosin 3)
(Tropomyosin gamma) (hTM5) isoform 4 [Canis familiaris].
Length = 285
Score = 301 bits (772), Expect = 6e-82
Identities = 169/284 (59%), Positives = 193/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE++L K K ++ LD LND+ I
Sbjct: 242 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 285
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris].
Length = 284
Score = 301 bits (771), Expect = 8e-82
Identities = 170/281 (60%), Positives = 191/281 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDL 909
KLEK+IDDLE++L K K ++ LD LND+
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2)
(Beta-tropomyosin) isoform 3 [Canis familiaris].
Length = 284
Score = 301 bits (771), Expect = 8e-82
Identities = 168/284 (59%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,213,115
Number of extensions: 559063
Number of successful extensions: 6535
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 5368
Number of HSP's successfully gapped: 164
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 367 e-101
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 311 1e-84
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 301 6e-82
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 301 6e-82
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 300 2e-81
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 293 2e-79
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 292 4e-79
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 282 5e-76
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 268 6e-72
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 250 2e-66
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 367 bits (942), Expect = e-101
Identities = 204/284 (71%), Positives = 210/284 (73%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENAIDRAEQAE+DKKAAE+KCKQVEEELTHLQKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE+LKDAQEKLEL+EKKASDAEGDVAALNRRIQLVEEELDRAQER
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
VSELKCGDLEEELKNVTNNL SDKLK
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LNCI
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 311 bits (796), Expect = 1e-84
Identities = 175/282 (62%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 301 bits (772), Expect = 6e-82
Identities = 171/284 (60%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 301 bits (772), Expect = 6e-82
Identities = 169/284 (59%), Positives = 193/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE++L K K ++ LD LND+ I
Sbjct: 242 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 285
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 300 bits (767), Expect = 2e-81
Identities = 167/284 (58%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 293 bits (750), Expect = 2e-79
Identities = 166/282 (58%), Positives = 189/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++K+AQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E + LEEEL+ + L +KLK
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLEE L AKE+NV QTLD TL +LN
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 292 bits (748), Expect = 4e-79
Identities = 167/282 (59%), Positives = 190/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 282 bits (721), Expect = 5e-76
Identities = 162/281 (57%), Positives = 186/281 (66%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDL 909
KLEK+IDDLE++L K K ++ LD LND+
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 268 bits (686), Expect = 6e-72
Identities = 154/282 (54%), Positives = 182/282 (64%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L +E+ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 250 bits (638), Expect = 2e-66
Identities = 146/282 (51%), Positives = 177/282 (62%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L +E+ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,597,814
Number of extensions: 541002
Number of successful extensions: 5218
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4599
Number of HSP's successfully gapped: 41
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 311 9e-85
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 301 5e-82
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 301 7e-82
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 297 1e-80
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 292 3e-79
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 286 2e-77
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 283 2e-76
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 268 5e-72
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 221 9e-58
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 194 2e-49
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 311 bits (796), Expect = 9e-85
Identities = 175/282 (62%), Positives = 195/282 (69%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 301 bits (772), Expect = 5e-82
Identities = 171/284 (60%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 301 bits (771), Expect = 7e-82
Identities = 168/284 (59%), Positives = 192/284 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
V+E KCGDLEEELK VTNNL +KLK
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEKTIDDLE+++ K K ++ LD LND+ +
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 297 bits (760), Expect = 1e-80
Identities = 169/280 (60%), Positives = 189/280 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLND 906
KLEK+IDDLE++L E+N T L LN+
Sbjct: 241 FAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKLALNE 280
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 292 bits (748), Expect = 3e-79
Identities = 167/282 (59%), Positives = 190/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 286 bits (732), Expect = 2e-77
Identities = 160/282 (56%), Positives = 191/282 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 241 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 282
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 283 bits (724), Expect = 2e-76
Identities = 163/284 (57%), Positives = 187/284 (65%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+E+EL LQKKLKGTEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE + LEE+L+ + L SDKLK
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 268 bits (686), Expect = 5e-72
Identities = 153/282 (54%), Positives = 182/282 (64%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+EE++ +K L+ +EDE D+
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
E L A++ L +++ A+ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 221 bits (563), Expect = 9e-58
Identities = 127/242 (52%), Positives = 145/242 (59%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D + + Q +L+ ++ AEGD AALNRRIQL+EEELDRA
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +EADRKY
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
SDKLK KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 913 CI 918
CI
Sbjct: 247 CI 248
Score = 53.5 bits (127), Expect = 3e-07
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + + A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE V+ L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKE 229
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 194 bits (492), Expect = 2e-49
Identities = 115/240 (47%), Positives = 136/240 (56%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ +++ D E Q +L+ K AE DVA+LNRRIQLVEEELDRA
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
EEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
SDKLK KLEK+IDDLEEK+ AKE+N+ Q LD TL +LN
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 246
Score = 57.0 bits (136), Expect = 3e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E A +RAE +E EE+ K V L L+ + + + DKY
Sbjct: 127 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE V L + I +EE++ A+E
Sbjct: 187 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKE 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,615,390
Number of extensions: 456523
Number of successful extensions: 4115
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3676
Number of HSP's successfully gapped: 23
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 300 8e-82
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 295 3e-80
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 288 4e-78
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 284 6e-77
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 231 5e-61
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 171 8e-43
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 300 bits (769), Expect = 8e-82
Identities = 168/281 (59%), Positives = 192/281 (68%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E KC +LEEELKNVTNNL +DKLK
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDL 909
KLEKTIDDLE++L K K ++ LD LND+
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 295 bits (755), Expect = 3e-80
Identities = 168/284 (59%), Positives = 190/284 (66%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ K++E+EL LQKKLK TEDELDKY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE KDAQEKLEL+EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
+SE KC +LEEELK VTNNL SDKLK
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLNCI 918
KLEK+IDDLE++L K K ++ LD LND+ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 288 bits (737), Expect = 4e-78
Identities = 166/285 (58%), Positives = 189/285 (66%), Gaps = 3/285 (1%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+EEE LQKKLKGTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE++KDAQEKLE +EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEI---QEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXX 597
RG+KVIENRAMKDEEKME+ QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGLKVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELE 180
Query: 598 XXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXX 777
V+E + LEEEL+ + L +KLK
Sbjct: 181 RSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAET 240
Query: 778 XXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
KLEKTIDDLEE L AKE+NV QTLD TL +LN
Sbjct: 241 RAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 284 bits (727), Expect = 6e-77
Identities = 158/281 (56%), Positives = 189/281 (67%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+E+EL +QKKLKGTEDELDKY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 426
SE LKDAQEKLEL+EKKA+DAE +VA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 XXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXX 606
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 607 XXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXX 786
++E +C +++E+++ + NL +DKLK
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 787 XXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDL 909
KLEKTIDDLE++L K K ++ LD LND+
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDM 281
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 231 bits (590), Expect = 5e-61
Identities = 133/242 (54%), Positives = 149/242 (61%)
Frame = +1
Query: 193 LTHLQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRA 372
L +++K++ + + D+ + + Q +L+ ++ AEGDVAALNRRIQLVEEELDRA
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 552
QER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 EEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 732
EEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 733 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
SDKLK KLEKTIDDLEEKL QAKE+NVG QTLD TLN+LN
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 246
Query: 913 CI 918
CI
Sbjct: 247 CI 248
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/103 (33%), Positives = 58/103 (56%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +L+ + E A +RAE +E EE+ K V L L+ + ++ DKY
Sbjct: 127 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +EE+L +A+E
Sbjct: 187 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKE 229
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 171 bits (433), Expect = 8e-43
Identities = 101/237 (42%), Positives = 133/237 (56%)
Frame = +1
Query: 202 LQKKLKGTEDELDKYSENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQER 381
+++K++ + + D E + Q ++E + AE +VA+LNRRIQLVEEELDRAQER
Sbjct: 10 VKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQER 69
Query: 382 XXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEV 561
RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADRKYEEV
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 562 ARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXX 741
ARKLVI ++E +C +++E+++ + NL
Sbjct: 130 ARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEI 189
Query: 742 XXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLVQAKEKNVGFTQTLDPTLNDLN 912
+DKLK KLEKTIDDLE+KL KE+++ + LD TL DLN
Sbjct: 190 KILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 246
Score = 52.0 bits (123), Expect = 7e-07
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +1
Query: 70 EAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKYS 249
E + +K+ +++ D E +RAE AES + +E+ + +++ L L + + DKY
Sbjct: 127 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 186
Query: 250 ENLKDAQEKLELSEKKASDAEGDVAALNRRIQLVEEELDRAQE 378
E +K +KL+ +E +A AE VA L + I +E++L +E
Sbjct: 187 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKE 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,619,866
Number of extensions: 338152
Number of successful extensions: 2700
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2486
Number of HSP's successfully gapped: 10
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007025
(1216 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 363 1e-97
Sscrofa_Chr01 123 2e-25
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 84 2e-13
Sscrofa_Chr04 84 2e-13
Sscrofa_Chr13 70 3e-09
>Sscrofa_Chr02
|| Length = 162569375
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 1 ctcgaccccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150668 ctcgaccccgacgccgctgccgccgcaggcccctccacgcccacaccccctacccactgc 61150727
Query: 61 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150728 ccagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcc 61150787
Query: 121 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61150788 atcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 61150847
Query: 181 gtg 183
|||
Sbjct: 61150848 gtg 61150850
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 307 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 367 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 427 gatgagagcgagag 440
||||||||||||||
Sbjct: 61161458 gatgagagcgagag 61161471
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 178 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156130 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 61156189
Query: 238 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156190 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 61156249
Query: 298 gcctccgacg 307
||||||||||
Sbjct: 61156250 gcctccgacg 61156259
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 439 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 499 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163880 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 61163939
Query: 559 gt 560
||
Sbjct: 61163940 gt 61163941
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 630 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61165635 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 61165694
Query: 690 ggctgcatctgaaaag 705
||||||||||||||||
Sbjct: 61165695 ggctgcatctgaaaag 61165710
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 557 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61164502 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 61164561
Query: 617 aggtgtctgaact 629
|||||||||||||
Sbjct: 61164562 aggtgtctgaact 61164574
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 767 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167561 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 61167620
Query: 827 atgacctggaag 838
||||||||||||
Sbjct: 61167621 atgacctggaag 61167632
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 704 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167413 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 61167472
Query: 764 aagagg 769
||||||
Sbjct: 61167473 aagagg 61167478
Score = 115 bits (58), Expect = 6e-23
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 837 agaaaaacttgtccaggccaaagaaaagaacgtgggctttactcaaacactggatccgac 896
||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||| |||
Sbjct: 61172133 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 61172192
Query: 897 actaaacgacctaaactgtatataaccaaa 926
||||||||| ||||||||||||||||||||
Sbjct: 61172193 actaaacgaactaaactgtatataaccaaa 61172222
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 2e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 439 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 498
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 499 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 558
||||||||||| || |||||||||||||| || ||||| | ||||||||||| ||||||
Sbjct: 264130705 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 264130646
Query: 559 gt 560
||
Sbjct: 264130645 gt 264130644
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 264134556 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 264134497
Query: 125 accgggccgagcaggcggag 144
|||| || ||||||||||||
Sbjct: 264134496 accgtgctgagcaggcggag 264134477
Score = 99.6 bits (50), Expect = 3e-18
Identities = 101/118 (85%)
Strand = Plus / Minus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| | |
Sbjct: 120240068 ccatggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttgg 120240009
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggt 182
| || || |||||||||||| | |||||||| || || ||||| | | ||||||||||
Sbjct: 120240008 atcgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcaggt 120239951
Score = 91.7 bits (46), Expect = 8e-16
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 475 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 534
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 120223826 gatgaggagaaaatggaaattcaggagatccagctgaaagaagccaagcacattgctgag 120223767
Query: 535 gaggccgaccgcaa 548
|| |||||||||||
Sbjct: 120223766 gatgccgaccgcaa 120223753
Score = 79.8 bits (40), Expect = 3e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 337 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 396
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 120225997 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 120225938
Query: 397 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 120225937 cagaaacttgaggaggctgagaaggcagcagatgagagtgagag 120225894
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 412 gcagaaaaggctgcagatgagag 434
|| || ||||| || ||||||||
Sbjct: 264130884 gccgagaaggcagctgatgagag 264130862
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 15261 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 15212
Score = 69.9 bits (35), Expect = 3e-09
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 264
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 14331 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 14272
Query: 265 gcgcaggaaaagctggagctgagcgagaagaaagc 299
|| ||||| |||||||||||| |||||||||||
Sbjct: 14271 gcccaggagaagctggagctggcagagaagaaagc 14237
Score = 65.9 bits (33), Expect = 5e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 340 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 399
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 2061 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 2002
Query: 400 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 2001 aagctggaggaagctgagaaagctgctgatgagagcgagag 1961
>Sscrofa_Chr04
|| Length = 143465943
Score = 83.8 bits (42), Expect = 2e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaa 116
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 104459762 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaa 104459811
Score = 69.9 bits (35), Expect = 3e-09
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 264
|||||||| || || |||||||||||||||||||||||||| || || ||||||||
Sbjct: 104460513 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 104460572
Query: 265 gcgcaggaaaagctggagctgagcgagaagaaagc 299
|| ||||| |||||||||||| |||||||||||
Sbjct: 104460573 gcccaggagaagctggagctggcagagaagaaagc 104460607
Score = 67.9 bits (34), Expect = 1e-08
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 752 ctgacaaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaac 811
|||| ||||| |||||||| ||||||||||||| |||||| |||||| || || || |
Sbjct: 63051653 ctgataaactcaaagaggcagagacccgtgctgcatttgctgagagatgggtagccaagc 63051594
Query: 812 tggaaaagaccatcgatgacctggaagaaaaact 845
|||||||||| || ||||| |||||||||||||
Sbjct: 63051593 tggaaaagacaattgatgatttggaagaaaaact 63051560
Score = 65.9 bits (33), Expect = 5e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 340 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 399
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 104473286 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 104473345
Query: 400 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 440
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 104473346 aagctggaggaagctgagaaagctgctgatgagagcgagag 104473386
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 3e-09
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 382 ctggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagaga 441
|||||||| || ||||| ||||| || || ||||| || ||||| || ||||| ||||||
Sbjct: 43190661 ctggccactgctctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagaga 43190720
Query: 442 ggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggag 501
|| |||||||| || |||||| | ||| | ||||||||||| || ||||| | |||||
Sbjct: 43190721 ggtatgaaggttattgaaaactgagccttaaaagatgaggaaaaaatggaagtacaggaa 43190780
Query: 502 atgcagctcaaagaggccaagcacattgccgaggaggcc 540
|| || |||||||| || ||| ||||||| || ||||||
Sbjct: 43190781 atccaactcaaagaagctaagtacattgcagaagaggcc 43190819
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,604,827
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 23
Length of query: 1216
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1195
Effective length of database: 2,808,413,156
Effective search space: 3356053721420
Effective search space used: 3356053721420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)