Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 235 5e-62
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 193 2e-49
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 193 2e-49
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 176 3e-44
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 172 6e-43
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 164 1e-40
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 164 1e-40
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 164 1e-40
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 164 1e-40
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 164 1e-40
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 193 bits (491), Expect = 2e-49
Identities = 115/246 (46%), Positives = 142/246 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 193 bits (491), Expect = 2e-49
Identities = 115/246 (46%), Positives = 142/246 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 176 bits (447), Expect = 3e-44
Identities = 107/244 (43%), Positives = 132/244 (54%)
Frame = +1
Query: 169 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 348
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 349 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 528
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 529 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 708
KYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 709 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 888
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 889 LNCI 900
+ I
Sbjct: 281 MTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 172 bits (435), Expect = 6e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 164 bits (416), Expect = 1e-40
Identities = 103/246 (41%), Positives = 134/246 (54%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EA RKYEEVARKLVI +++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 164 bits (416), Expect = 1e-40
Identities = 103/246 (41%), Positives = 134/246 (54%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EA RKYEEVARKLVI +++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 1e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 1e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 1e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,476,431
Number of extensions: 620423
Number of successful extensions: 6278
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5865
Number of HSP's successfully gapped: 13
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 235 5e-62
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 235 5e-62
Alignment gi|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) iso... 233 3e-61
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 224 2e-58
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 213 2e-55
Alignment gi|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain... 205 6e-53
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 205 7e-53
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 202 4e-52
Alignment gi|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain... 201 1e-51
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 201 1e-51
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 112 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 171
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 172 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 231
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 232 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 291
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 292 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) isoform 3 [Canis
familiaris].
Length = 279
Score = 233 bits (593), Expect = 3e-61
Identities = 134/205 (65%), Positives = 135/205 (65%)
Frame = +1
Query: 286 KAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEE 465
+AEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMKDEE
Sbjct: 75 EAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEE 134
Query: 466 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKN 645
KMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSELKCGDLEEELKN
Sbjct: 135 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKN 194
Query: 646 VTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEK 825
VTNNL SDKLK KLEKTIDDLEEK
Sbjct: 195 VTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEK 254
Query: 826 LAQAKEENVGLHQTLDQTLNELNCI 900
LAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 255 LAQAKEENVGLHQTLDQTLNELNCI 279
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris].
Length = 248
Score = 224 bits (570), Expect = 2e-58
Identities = 134/246 (54%), Positives = 147/246 (59%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 877 TLNELN 894
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 213 bits (543), Expect = 2e-55
Identities = 126/246 (51%), Positives = 146/246 (59%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
16 [Canis familiaris].
Length = 248
Score = 205 bits (522), Expect = 6e-53
Identities = 126/246 (51%), Positives = 142/246 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 877 TLNELN 894
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 205 bits (521), Expect = 7e-53
Identities = 121/248 (48%), Positives = 143/248 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 877 TLNELNCI 900
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 202 bits (515), Expect = 4e-52
Identities = 119/215 (55%), Positives = 130/215 (60%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 9
[Canis familiaris].
Length = 245
Score = 201 bits (511), Expect = 1e-51
Identities = 125/244 (51%), Positives = 138/244 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNQLKL 240
Query: 877 TLNE 888
LNE
Sbjct: 241 ALNE 244
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris].
Length = 248
Score = 201 bits (510), Expect = 1e-51
Identities = 123/248 (49%), Positives = 140/248 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 877 TLNELNCI 900
LN++ I
Sbjct: 241 ALNDMTSI 248
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,791,640
Number of extensions: 643124
Number of successful extensions: 6918
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 6400
Number of HSP's successfully gapped: 81
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 281 1e-75
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 235 5e-62
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 213 2e-55
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 204 1e-52
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 200 2e-51
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 197 1e-50
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 195 7e-50
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 195 7e-50
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 188 9e-48
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 184 2e-46
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 281 bits (718), Expect = 1e-75
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 877 TLNELNCI 900
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 213 bits (543), Expect = 2e-55
Identities = 126/246 (51%), Positives = 146/246 (59%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 204 bits (519), Expect = 1e-52
Identities = 123/245 (50%), Positives = 141/245 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 877 TLNEL 891
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 200 bits (508), Expect = 2e-51
Identities = 125/244 (51%), Positives = 138/244 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL 240
Query: 877 TLNE 888
LNE
Sbjct: 241 ALNE 244
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 197 bits (501), Expect = 1e-50
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 195 bits (495), Expect = 7e-50
Identities = 115/207 (55%), Positives = 125/207 (60%)
Frame = +1
Query: 274 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 453
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 EAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 454 KDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEE 633
KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 634 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 813
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 814 LEEKLAQAKEENVGLHQTLDQTLNELN 894
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 195 bits (495), Expect = 7e-50
Identities = 115/215 (53%), Positives = 129/215 (60%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 188 bits (477), Expect = 9e-48
Identities = 113/245 (46%), Positives = 138/245 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 877 TLNEL 891
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 184 bits (466), Expect = 2e-46
Identities = 110/215 (51%), Positives = 124/215 (57%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
+ LEEEL+ + L +KLK
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,170,752
Number of extensions: 624319
Number of successful extensions: 6542
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6119
Number of HSP's successfully gapped: 16
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 271 7e-73
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 223 2e-58
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 205 6e-53
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 200 1e-51
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 199 4e-51
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 195 6e-50
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 195 6e-50
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 176 2e-44
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 176 2e-44
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 172 6e-43
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 271 bits (693), Expect = 7e-73
Identities = 157/248 (63%), Positives = 160/248 (64%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 877 TLNELNCI 900
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 223 bits (569), Expect = 2e-58
Identities = 134/246 (54%), Positives = 147/246 (59%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 877 TLNELN 894
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 205 bits (521), Expect = 6e-53
Identities = 126/246 (51%), Positives = 142/246 (57%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 877 TLNELN 894
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 200 bits (509), Expect = 1e-51
Identities = 123/248 (49%), Positives = 140/248 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 877 TLNELNCI 900
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 199 bits (505), Expect = 4e-51
Identities = 124/244 (50%), Positives = 137/244 (56%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEK+IDDLE++L E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKL 240
Query: 877 TLNE 888
LNE
Sbjct: 241 ALNE 244
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 195 bits (495), Expect = 6e-50
Identities = 115/207 (55%), Positives = 125/207 (60%)
Frame = +1
Query: 274 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 453
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 ETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 454 KDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEE 633
KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 634 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 813
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 814 LEEKLAQAKEENVGLHQTLDQTLNELN 894
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 195 bits (495), Expect = 6e-50
Identities = 115/215 (53%), Positives = 129/215 (60%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 176 bits (447), Expect = 2e-44
Identities = 104/217 (47%), Positives = 123/217 (56%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 248 KLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 176 bits (447), Expect = 2e-44
Identities = 107/215 (49%), Positives = 124/215 (57%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
+ LEE+L+ + L SDKLK
Sbjct: 188 GQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 172 bits (435), Expect = 6e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,866,675
Number of extensions: 519835
Number of successful extensions: 5328
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4942
Number of HSP's successfully gapped: 13
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 281 6e-76
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 197 9e-51
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 177 1e-44
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 175 4e-44
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 172 4e-43
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 159 3e-39
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 281 bits (718), Expect = 6e-76
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 877 TLNELNCI 900
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 197 bits (501), Expect = 9e-51
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +1
Query: 157 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 336
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 337 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 516
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 517 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 696
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 697 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 876
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 877 TLNELN 894
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 177 bits (449), Expect = 1e-44
Identities = 109/218 (50%), Positives = 124/218 (56%), Gaps = 3/218 (1%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RG+
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGL 127
Query: 430 KVIENRAMKDEEKMEIQEMQ---LKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXX 600
KVIENRAMKDEEKME+QEMQ LKEAKHIAE++DRKYEEVARKLVI
Sbjct: 128 KVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAE 187
Query: 601 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 780
V+E + LEEEL+ + L +KLK
Sbjct: 188 VAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAER 247
Query: 781 XXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 894
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 SVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 175 bits (444), Expect = 4e-44
Identities = 106/241 (43%), Positives = 131/241 (54%)
Frame = +1
Query: 169 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 348
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 349 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 528
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 529 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 708
KYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 709 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 888
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 889 L 891
+
Sbjct: 281 M 281
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 172 bits (435), Expect = 4e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +1
Query: 250 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 429
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 430 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 609
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 610 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 789
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 790 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 900
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 159 bits (402), Expect = 3e-39
Identities = 96/241 (39%), Positives = 128/241 (53%)
Frame = +1
Query: 169 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 348
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 349 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 528
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 529 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 708
KYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 709 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 888
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 889 L 891
+
Sbjct: 281 M 281
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,708,258
Number of extensions: 399595
Number of successful extensions: 4373
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4062
Number of HSP's successfully gapped: 6
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007027
(1132 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 408 e-111
Sscrofa_Chr01 123 2e-25
Sscrofa_Chr13 70 3e-09
Sscrofa_Chr04 68 1e-08
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 66 4e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 408 bits (206), Expect = e-111
Identities = 285/306 (93%), Gaps = 5/306 (1%)
Strand = Plus / Plus
Query: 819 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172133 agaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagac 61172192
Query: 879 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172193 actaaacgaactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactcc 61172252
Query: 939 agagctacgtgtttttctccttct-ttgt-agaagtttctttttgta-tgcccccttgct 995
|||||||||||||||||| ||||| |||| ||||||||||||| || |||| | |||||
Sbjct: 61172253 agagctacgtgtttttct-cttctcttgtaagaagtttcttttgttattgcctctttgct 61172311
Query: 996 ttgcctggaatgtncagcaaattatgaatacgtgaccaaatattttgtatcagaaaagct 1055
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61172312 ttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagct 61172371
Query: 1056 ttgagcaccagttaaatctattccttccnnttttttcagtggncacagc-ttttcagctc 1114
|||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||
Sbjct: 61172372 ttgagcaccagttaaatctattccttcctttttttcaagtggcaccagctttttcagctc 61172431
Query: 1115 tatttt 1120
||||||
Sbjct: 61172432 tatttt 61172437
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 289 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161338 gccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggac 61161397
Query: 349 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61161398 agggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgca 61161457
Query: 409 gatgagagcgagag 422
||||||||||||||
Sbjct: 61161458 gatgagagcgagag 61161471
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 157 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156657 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 61156716
Query: 217 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61156717 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 61156776
Query: 277 cggcgggagaaag 289
|||||||||||||
Sbjct: 61156777 cggcgggagaaag 61156789
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 421 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 481 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61163880 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 61163939
Query: 541 gt 542
||
Sbjct: 61163940 gt 61163941
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 612 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61165635 aaaatgtggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctaga 61165694
Query: 672 ggctgcatctgaaaag 687
||||||||||||||||
Sbjct: 61165695 ggctgcatctgaaaag 61165710
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 539 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61164502 aggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagcgtgccg 61164561
Query: 599 aggtgtctgaact 611
|||||||||||||
Sbjct: 61164562 aggtgtctgaact 61164574
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 749 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167561 aggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcg 61167620
Query: 809 atgacctggaag 820
||||||||||||
Sbjct: 61167621 atgacctggaag 61167632
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 686 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61167413 agtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaactga 61167472
Query: 746 aagagg 751
||||||
Sbjct: 61167473 aagagg 61167478
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 2e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 421 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 480
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 481 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 540
||||||||||| || |||||||||||||| || ||||| | ||||||||||| ||||||
Sbjct: 264130705 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 264130646
Query: 541 gt 542
||
Sbjct: 264130645 gt 264130644
Score = 91.7 bits (46), Expect = 8e-16
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 457 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 516
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 120223826 gatgaggagaaaatggaaattcaggagatccagctgaaagaagccaagcacattgctgag 120223767
Query: 517 gaggccgaccgcaa 530
|| |||||||||||
Sbjct: 120223766 gatgccgaccgcaa 120223753
Score = 79.8 bits (40), Expect = 3e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 319 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 378
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 120225997 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 120225938
Query: 379 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagag 422
||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 120225937 cagaaacttgaggaggctgagaaggcagcagatgagagtgagag 120225894
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 334 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 393
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 264130944 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 264130885
Query: 394 gcagaaaaggctgcagatgagag 416
|| || ||||| || ||||||||
Sbjct: 264130884 gccgagaaggcagctgatgagag 264130862
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 3e-09
Identities = 128/159 (80%)
Strand = Plus / Plus
Query: 364 ctggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgagagcgagaga 423
|||||||| || ||||| ||||| || || ||||| || ||||| || ||||| ||||||
Sbjct: 43190661 ctggccactgctctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagaga 43190720
Query: 424 ggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcaggag 483
|| |||||||| || |||||| | ||| | ||||||||||| || ||||| | |||||
Sbjct: 43190721 ggtatgaaggttattgaaaactgagccttaaaagatgaggaaaaaatggaagtacaggaa 43190780
Query: 484 atgcagctcaaagaggccaagcacattgccgaggaggcc 522
|| || |||||||| || ||| ||||||| || ||||||
Sbjct: 43190781 atccaactcaaagaagctaagtacattgcagaagaggcc 43190819
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 734 ctgacaaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaac 793
|||| ||||| |||||||| ||||||||||||| |||||| |||||| || || || |
Sbjct: 63051653 ctgataaactcaaagaggcagagacccgtgctgcatttgctgagagatgggtagccaagc 63051594
Query: 794 tggaaaagaccatcgatgacctggaagaaaaact 827
|||||||||| || ||||| |||||||||||||
Sbjct: 63051593 tggaaaagacaattgatgatttggaagaaaaact 63051560
Score = 65.9 bits (33), Expect = 4e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 322 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 381
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 104473286 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 104473345
Query: 382 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 422
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 104473346 aagctggaggaagctgagaaagctgctgatgagagcgagag 104473386
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 178 gaggcggtgaaacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 233
||||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 104467102 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 104467157
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 65.9 bits (33), Expect = 4e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 322 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 381
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 2061 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 2002
Query: 382 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 422
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 2001 aagctggaggaagctgagaaagctgctgatgagagcgagag 1961
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,527,666
Number of extensions: 228
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 17
Length of query: 1132
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1111
Effective length of database: 2,808,413,156
Effective search space: 3120147016316
Effective search space used: 3120147016316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)