Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 231 1e-60
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 231 1e-60
Alignment gi|XP_002700840.1| PREDICTED: IGK protein-like [Bos taurus]. 170 2e-42
Alignment gi|XP_002691447.1| PREDICTED: IGK protein-like [Bos taurus]. 167 2e-41
Alignment gi|XP_002700843.1| PREDICTED: IGK protein-like [Bos taurus]. 167 2e-41
Alignment gi|XP_002700842.1| PREDICTED: IGK protein-like [Bos taurus]. 164 8e-41
Alignment gi|XP_002700841.1| PREDICTED: IGK protein-like [Bos taurus]. 162 5e-40
Alignment gi|XP_002700839.1| PREDICTED: IGK protein-like [Bos taurus]. 162 5e-40
Alignment gi|XP_002700838.1| PREDICTED: IGK protein-like [Bos taurus]. 162 5e-40
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 126 3e-29
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 231 bits (588), Expect = 1e-60
Identities = 119/240 (49%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MR P Q W+PG +G I +TQ+P SLS S G+ SI+C++SQS+ D K L W
Sbjct: 1 MRAPGQLLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSI---DTK--LAW 55
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPG++P+ LIY + P +FSGSG G DFTL IS ++A+D+ YYC
Sbjct: 56 YQQKPGKAPKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYCLSRNCCV 115
Query: 392 HGFGAGTKLELKRADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQ 571
+ FG GTK+E+KR+DA+PSVF+F PS EQL+T TVSVVCL+N F+P+++NVKWKVDGV Q
Sbjct: 116 NTFGQGTKVEIKRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQ 175
Query: 572 -SSGILDSVTEQDSKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
SS +S T+QDSK H+ Y+CEV+HK+L + LVKSF++NEC
Sbjct: 176 SSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 231 bits (588), Expect = 1e-60
Identities = 119/240 (49%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MR P Q W+PG +G I +TQ+P SLS S G+ SI+C++SQS+ D K L W
Sbjct: 1 MRAPGQLLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQASQSI---DTK--LAW 55
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPG++P+ LIY + P +FSGSG G DFTL IS ++A+D+ YYC
Sbjct: 56 YQQKPGKAPKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYCLSRNCCV 115
Query: 392 HGFGAGTKLELKRADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQ 571
+ FG GTK+E+KR+DA+PSVF+F PS EQL+T TVSVVCL+N F+P+++NVKWKVDGV Q
Sbjct: 116 NTFGQGTKVEIKRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQ 175
Query: 572 -SSGILDSVTEQDSKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
SS +S T+QDSK H+ Y+CEV+HK+L + LVKSF++NEC
Sbjct: 176 SSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_002700840.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 126
Score = 170 bits (431), Expect = 2e-42
Identities = 81/120 (67%), Positives = 92/120 (76%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
M+FPAQ WVPGS G +VLTQTPLSLSV PGE SISC+S+QSL ++DGK YL W
Sbjct: 1 MKFPAQLLGFLLLWVPGSSGDVVLTQTPLSLSVIPGETVSISCKSTQSLKYSDGKTYLRW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
KPGQSPQ +IYQ +NR+TGVPDRF+GSGS TDFTL IS V+AED GVYYCFQ P
Sbjct: 61 VQHKPGQSPQGVIYQVSNRNTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCFQGTYEP 120
>ref|XP_002691447.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 126
Score = 167 bits (422), Expect = 2e-41
Identities = 80/120 (66%), Positives = 92/120 (76%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE +ISC+S+QSL ++DGK YL W
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVTISCKSTQSLKYSDGKTYLQW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
+ KPGQSP+ LIYQ +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYC Q +P
Sbjct: 61 FQHKPGQSPRLLIYQISNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCLQRSYAP 120
>ref|XP_002700843.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 126
Score = 167 bits (422), Expect = 2e-41
Identities = 80/120 (66%), Positives = 92/120 (76%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE +ISC+S+QSL ++DGK YL W
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVTISCKSTQSLKYSDGKTYLQW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
+ KPGQSP+ LIYQ +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYC Q +P
Sbjct: 61 FQHKPGQSPRLLIYQISNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCLQRSYAP 120
>ref|XP_002700842.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 183
Score = 164 bits (416), Expect = 8e-41
Identities = 82/120 (68%), Positives = 90/120 (75%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE SISC+S+QSL ++DGK YL
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVSISCKSTQSLKYSDGKTYLYR 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
KPGQSPQ LIY +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYCFQ Q P
Sbjct: 61 LQHKPGQSPQSLIYYVSNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCFQGTQVP 120
>ref|XP_002700841.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 125
Score = 162 bits (409), Expect = 5e-40
Identities = 81/120 (67%), Positives = 89/120 (74%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE SISC+S+QSL ++ GK YL W
Sbjct: 1 MRFPAQFLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVSISCKSTQSLKYS-GKTYLRW 59
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
KPGQSPQ LIYQ +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYC Q P
Sbjct: 60 LQHKPGQSPQSLIYQVSNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCVQETHDP 119
>ref|XP_002700839.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 125
Score = 162 bits (409), Expect = 5e-40
Identities = 81/120 (67%), Positives = 89/120 (74%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE SISC+S+QSL ++ GK YL W
Sbjct: 1 MRFPAQFLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVSISCKSTQSLKYS-GKTYLRW 59
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
KPGQSPQ LIYQ +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYC Q P
Sbjct: 60 LQHKPGQSPQSLIYQVSNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCVQETHDP 119
>ref|XP_002700838.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 125
Score = 162 bits (409), Expect = 5e-40
Identities = 81/120 (67%), Positives = 89/120 (74%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS G +VLTQTPLSLSV PGE SISC+S+QSL ++ GK YL W
Sbjct: 1 MRFPAQFLGLLLLWVPGSSGDVVLTQTPLSLSVIPGETVSISCKSTQSLKYS-GKTYLRW 59
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
KPGQSPQ LIYQ +NR TGVPDRF+GSGS TDFTL IS V+AED GVYYC Q P
Sbjct: 60 LQHKPGQSPQSLIYQVSNRYTGVPDRFTGSGSETDFTLTISSVQAEDAGVYYCVQETHDP 119
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 126 bits (316), Expect = 3e-29
Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 6/222 (2%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNRDTGV 280
LTQ P ++SVS G+ ASI+C+ L + +WY QKPGQ+P +IY N +G+
Sbjct: 23 LTQPP-AVSVSLGQTASITCQGDDLELLS-----AHWYQQKPGQAPVLVIYADDNLASGI 76
Query: 281 PDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQA-LQSPHG----FGAGTKLE-LKRADAK 442
PDRFSGS S T TL I +AED YYC A + P FG GT++ L + +
Sbjct: 77 PDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDLFGGGTRVTVLGQPKSP 136
Query: 443 PSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQDSKDXX 622
PSV +FPPSKE+L ++VCL++ F+P V V WK DG + + + + S
Sbjct: 137 PSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTITRNVKTTRASKQSNSKY 196
Query: 623 XXXXXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
+ YSCEVTH+ S + K+ + C
Sbjct: 197 AASSYLSLTDSDWKSKGS-YSCEVTHE--GSTVTKTVKTSAC 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,554,754
Number of extensions: 915437
Number of successful extensions: 4038
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 3972
Number of HSP's successfully gapped: 30
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849967.1| PREDICTED: similar to Ig kappa chain V-II regio... 195 5e-50
Alignment gi|XP_850488.1| PREDICTED: similar to Ig kappa chain V-II regio... 195 6e-50
Alignment gi|XP_548807.2| PREDICTED: similar to Ig kappa chain V-II regio... 194 1e-49
Alignment gi|XP_852282.1| PREDICTED: similar to Ig kappa chain V-II regio... 191 1e-48
Alignment gi|XP_850241.1| PREDICTED: similar to Ig kappa chain V-II regio... 190 2e-48
Alignment gi|XP_548613.2| PREDICTED: similar to Ig kappa chain V-II regio... 190 2e-48
Alignment gi|XP_851084.1| PREDICTED: similar to Ig kappa chain V-II regio... 188 6e-48
Alignment gi|XP_854747.1| PREDICTED: similar to Ig kappa chain V-II regio... 181 9e-46
Alignment gi|XP_852837.1| PREDICTED: similar to Ig kappa chain V-II regio... 180 2e-45
Alignment gi|XP_854717.1| PREDICTED: similar to Ig kappa chain V-II regio... 180 2e-45
>ref|XP_849967.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor, partial [Canis familiaris].
Length = 375
Score = 195 bits (496), Expect = 5e-50
Identities = 97/163 (59%), Positives = 115/163 (70%), Gaps = 2/163 (1%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH+DG YL
Sbjct: 141 LNMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSDGNTYL 200
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
NW+ QKPGQSPQRLIY+ +NRD GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q Q
Sbjct: 201 NWFRQKPGQSPQRLIYKVSNRDPGVPDRFSGSGSGTDFTLRISRVEADDTGVYYCMQGTQ 260
Query: 386 SPHGFGAGTKLELKRADAKPSVFI--FPPSKEQLETQTVSVVC 508
P + +LK + + + P S +T S+ C
Sbjct: 261 FPPAAAFAGQKQLKNGGSSGDIVMTQTPLSLSVSPGETASISC 303
Score = 169 bits (429), Expect = 3e-42
Identities = 80/99 (80%), Positives = 89/99 (89%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA 259
GS G IV+TQTPLSLSVSPGE ASISC++SQSLLH+DG YLNW+ QKPGQSPQRLIY+
Sbjct: 277 GSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSDGNTYLNWFRQKPGQSPQRLIYKV 336
Query: 260 TNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQ 376
+NRD GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q
Sbjct: 337 SNRDPGVPDRFSGSGSGTDFTLRISRVEADDTGVYYCGQ 375
>ref|XP_850488.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 120
Score = 195 bits (495), Expect = 6e-50
Identities = 92/119 (77%), Positives = 103/119 (86%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH+DG YLNW
Sbjct: 1 MRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSDGNTYLNW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQS 388
+ QKPGQSPQRLIY+ +NRDTGVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC QALQS
Sbjct: 61 FRQKPGQSPQRLIYKVSNRDTGVPDRFSGSGSGTDFTLRISRVEADDTGVYYCGQALQS 119
>ref|XP_548807.2| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 386
Score = 194 bits (492), Expect = 1e-49
Identities = 97/163 (59%), Positives = 115/163 (70%), Gaps = 2/163 (1%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH+DG YL
Sbjct: 141 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSDGNTYL 200
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
NW+ QKPGQSPQRLIY+ +NRDTGVPDRFSGSGSGTDFTL+IS VEA+D GVYYC Q Q
Sbjct: 201 NWFRQKPGQSPQRLIYKVSNRDTGVPDRFSGSGSGTDFTLRISTVEADDTGVYYCGQGTQ 260
Query: 386 SPHGFGAGTKLELKRADAKPSVFIF--PPSKEQLETQTVSVVC 508
P + +LK + + + P S +T S+ C
Sbjct: 261 FPPAAAFAGQKQLKNGGSSGDIVMTQNPLSLSVSPGETASISC 303
Score = 173 bits (438), Expect = 3e-43
Identities = 81/104 (77%), Positives = 91/104 (87%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA 259
GS G IV+TQ PLSLSVSPGE ASISC++SQSLLH+DG YLNW+ QKPGQSPQRLIY+
Sbjct: 277 GSSGDIVMTQNPLSLSVSPGETASISCKASQSLLHSDGNTYLNWFRQKPGQSPQRLIYKV 336
Query: 260 TNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
+NRD GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q P
Sbjct: 337 SNRDPGVPDRFSGSGSGTDFTLRISRVEADDTGVYYCGQGIQDP 380
>ref|XP_852282.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor, partial [Canis familiaris].
Length = 320
Score = 191 bits (484), Expect = 1e-48
Identities = 95/163 (58%), Positives = 115/163 (70%), Gaps = 2/163 (1%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH++G YL
Sbjct: 75 LKMRFPSQFLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSNGNTYL 134
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
NW+ QKPGQSPQ LIY+ +NRD GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q
Sbjct: 135 NWFRQKPGQSPQGLIYKVSNRDPGVPDRFSGSGSGTDFTLRISRVEADDAGVYYCMQGIQ 194
Query: 386 SPH--GFGAGTKLELKRADAKPSVFIFPPSKEQLETQTVSVVC 508
+P + A + +K + PPS + S+ C
Sbjct: 195 APPTVPYQADVQAGMKSTSGDIVMTQAPPSLSVSPGEPASISC 237
Score = 156 bits (394), Expect = 3e-38
Identities = 75/103 (72%), Positives = 87/103 (84%)
Frame = +2
Query: 83 SDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQAT 262
+ G IV+TQ P SLSVSPGEPASISC++SQSLLH++G YL W+ QKPGQSP+ LIY+ +
Sbjct: 212 TSGDIVMTQAPPSLSVSPGEPASISCKASQSLLHSNGNTYLYWFRQKPGQSPEGLIYKVS 271
Query: 263 NRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
NR TGV DRFSGSGSGTDFTL+ISRVEA+D GVYYC Q LQ P
Sbjct: 272 NRFTGVSDRFSGSGSGTDFTLRISRVEADDAGVYYCGQNLQFP 314
>ref|XP_850241.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 377
Score = 190 bits (483), Expect = 2e-48
Identities = 90/128 (70%), Positives = 104/128 (81%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTP SLSVSPGEPASISC++SQSLLH++G YL
Sbjct: 232 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPPSLSVSPGEPASISCKASQSLLHSNGNTYL 291
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
NW+ QKPGQSPQ LIY+ +NR TGV DRFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q
Sbjct: 292 NWFRQKPGQSPQGLIYRVSNRSTGVSDRFSGSGSGTDFTLRISRVEADDAGVYYCGQGIQ 351
Query: 386 SPHGFGAG 409
P +GAG
Sbjct: 352 DPPTWGAG 359
Score = 176 bits (446), Expect = 3e-44
Identities = 83/115 (72%), Positives = 94/115 (81%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFP+Q W+PGS G IV+TQTPLSLSVSPGEPAS SC++SQSLLH++G YL W
Sbjct: 1 MRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGEPASNSCKASQSLLHSNGNTYLFW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQ 376
+ KPGQSPQ LIY+ +NRD GVPDRFSGSGSGTDFTL+ISRVEA D GVYYC Q
Sbjct: 61 FRHKPGQSPQSLIYKVSNRDPGVPDRFSGSGSGTDFTLRISRVEANDTGVYYCGQ 115
Score = 82.8 bits (203), Expect = 5e-16
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDG 193
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH+DG
Sbjct: 139 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSDG 194
>ref|XP_548613.2| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 379
Score = 190 bits (482), Expect = 2e-48
Identities = 89/122 (72%), Positives = 101/122 (82%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGEPASISC++SQSLLH++G YL
Sbjct: 134 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGEPASISCKASQSLLHSNGNTYL 193
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
W+ QKPGQSPQRLIY +NRD GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q
Sbjct: 194 YWFRQKPGQSPQRLIYLVSNRDAGVPDRFSGSGSGTDFTLRISRVEADDAGVYYCGQGIQ 253
Query: 386 SP 391
P
Sbjct: 254 DP 255
Score = 168 bits (425), Expect = 8e-42
Identities = 79/101 (78%), Positives = 90/101 (89%)
Frame = +2
Query: 89 GAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNR 268
G IV+TQTPLSLSVSPGEPASISC++SQSLLH++G YL W+ QKPGQSPQRLIY+ +NR
Sbjct: 273 GDIVMTQTPLSLSVSPGEPASISCKASQSLLHSNGNTYLFWFRQKPGQSPQRLIYKVSNR 332
Query: 269 DTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
D GVPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q P
Sbjct: 333 DPGVPDRFSGSGSGTDFTLRISRVEADDAGVYYCGQGIQFP 373
>ref|XP_851084.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor, partial [Canis familiaris].
Length = 134
Score = 188 bits (478), Expect = 6e-48
Identities = 89/122 (72%), Positives = 101/122 (82%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGEPASISC++SQSLLH++G YL
Sbjct: 7 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGEPASISCKASQSLLHSNGNTYL 66
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
W+ QKPGQSPQRLIY+ +NRDTGVPDRFSGSGSGTDFTL+IS VEA+D GVYYC Q Q
Sbjct: 67 FWFRQKPGQSPQRLIYKVSNRDTGVPDRFSGSGSGTDFTLRISTVEADDTGVYYCGQGTQ 126
Query: 386 SP 391
P
Sbjct: 127 FP 128
>ref|XP_854747.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 121
Score = 181 bits (459), Expect = 9e-46
Identities = 86/121 (71%), Positives = 100/121 (82%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISCR++QSLLH++G YL+W
Sbjct: 1 MRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCRANQSLLHSNGNTYLDW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y+QKPGQSPQ LIY+ +N TGV DRFSGSGSGTDFTLKISRVEA+D GVYYC QA +S
Sbjct: 61 YMQKPGQSPQGLIYRVSNHFTGVSDRFSGSGSGTDFTLKISRVEADDAGVYYCGQARESE 120
Query: 392 H 394
+
Sbjct: 121 Y 121
>ref|XP_852837.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 214
Score = 180 bits (457), Expect = 2e-45
Identities = 86/122 (70%), Positives = 99/122 (81%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
L MRFP+Q W+PGS G IV+TQTPLSLSVSPGE ASISC++SQSLLH++G YL
Sbjct: 87 LKMRFPSQLLGLLMLWIPGSSGDIVMTQTPLSLSVSPGETASISCKASQSLLHSNGNTYL 146
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
W+ QKPGQSPQRLI +NRD GVP RFSGSGSGTDFTL+ISRVEA+D GVYYC Q +Q
Sbjct: 147 FWFRQKPGQSPQRLINLVSNRDPGVPHRFSGSGSGTDFTLRISRVEADDAGVYYCGQGIQ 206
Query: 386 SP 391
+P
Sbjct: 207 AP 208
>ref|XP_854717.1| PREDICTED: similar to Ig kappa chain V-II region RPMI 6410
precursor [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 88/120 (73%), Positives = 97/120 (80%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ W PGS G IV+TQTPLSLSVSPGEPASISCR+SQSLLH++G YL W
Sbjct: 1 MRFPAQLLGLLMLWFPGSSGDIVMTQTPLSLSVSPGEPASISCRASQSLLHSNGNTYLYW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
+ QKPGQSPQ LIY +NR + VPDRFSGSGSGTDFTL+ISRVEA+D GVYYC Q LQ P
Sbjct: 61 FRQKPGQSPQGLIYLVSNRFSWVPDRFSGSGSGTDFTLRISRVEADDAGVYYCGQNLQFP 120
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,157,935
Number of extensions: 934869
Number of successful extensions: 4193
Number of sequences better than 1.0e-05: 235
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 246
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-li... 137 1e-32
Alignment gi|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-li... 134 1e-31
Alignment gi|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-li... 130 2e-30
Alignment gi|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-li... 124 2e-28
Alignment gi|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-... 119 3e-27
Alignment gi|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-... 119 3e-27
Alignment gi|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-... 112 4e-25
Alignment gi|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [H... 112 4e-25
Alignment gi|XP_003403578.1| PREDICTED: ig kappa chain V-I region Walker-... 112 7e-25
Alignment gi|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-... 110 1e-24
>ref|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-like [Homo sapiens].
Length = 152
Score = 137 bits (345), Expect = 1e-32
Identities = 69/120 (57%), Positives = 84/120 (70%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
M PAQ W+P + G IVLTQ+P +LS+SPGE A++SCR+SQS+ +YL W
Sbjct: 1 MEAPAQLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCRASQSV-----SSYLAW 55
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPGQ+P+ LIY A+NR TG+P RFSGSGSGTDFTL IS +E ED VYYC Q P
Sbjct: 56 YQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP 115
>ref|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 151
Score = 134 bits (337), Expect = 1e-31
Identities = 66/120 (55%), Positives = 84/120 (70%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
M PAQ W+P + G IV+TQ+P +LS+SPGE A++SCR+SQS+ +YL+W
Sbjct: 1 MEAPAQLLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSV----SSSYLSW 56
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPGQ+P+ LIY A+ R TG+P RFSGSGSGTDFTL IS ++ ED VYYC Q P
Sbjct: 57 YQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLP 116
>ref|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 155
Score = 130 bits (326), Expect = 2e-30
Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +2
Query: 71 WVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLI 250
W+P + G IV+TQ+P +LS+SPGE A++SCR+SQS+ +YL+WY QKPGQ+P+ LI
Sbjct: 17 WLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSV----SSSYLSWYQQKPGQAPRLLI 72
Query: 251 YQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHGFGAGTKLELK- 427
Y A+ R TG+P RFSGSGSGTDFTL IS ++ ED VYYC Q P T ++ +
Sbjct: 73 YGASTRATGIPARFSGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLP-----PTVIQHET 127
Query: 428 RADAKPSVFIFPPSKEQLETQTVSVV 505
+ +PSV F + L QT +VV
Sbjct: 128 KTSTRPSV--FTRFYQLLPLQTANVV 151
>ref|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 170
Score = 124 bits (310), Expect = 2e-28
Identities = 71/144 (49%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Frame = +2
Query: 77 PGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQ 256
P G IV+TQ+P +LS+SPGE A++SCR+SQS+ +YL+WY QKPGQ+P+ LIY
Sbjct: 34 PRYHGEIVMTQSPATLSLSPGERATLSCRASQSV----SSSYLSWYQQKPGQAPRLLIYG 89
Query: 257 ATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHGFGAGTKLELK-RA 433
A+ R TG+P RFSGSGSGTDFTL IS ++ ED VYYC Q P T ++ + +
Sbjct: 90 ASTRATGIPARFSGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLP-----PTVIQHETKT 144
Query: 434 DAKPSVFIFPPSKEQLETQTVSVV 505
+PSV F + L QT +VV
Sbjct: 145 STRPSV--FTRFYQLLPLQTANVV 166
>ref|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 119 bits (299), Expect = 3e-27
Identities = 61/122 (50%), Positives = 79/122 (64%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
+ MR PAQ W+ G+ I +TQ+P SLS S G+ +I+CR+SQ + N L
Sbjct: 1 MEMRVPAQLLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQGI-----SNGL 55
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
+WY QKPGQ+P LIY A++ +GVP RFSGSGSGTDFTL IS ++ EDV YYC Q
Sbjct: 56 SWYQQKPGQAPTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQDYT 115
Query: 386 SP 391
+P
Sbjct: 116 TP 117
>ref|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 119 bits (299), Expect = 3e-27
Identities = 61/122 (50%), Positives = 79/122 (64%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
+ MR PAQ W+ G+ I +TQ+P SLS S G+ +I+CR+SQ + N L
Sbjct: 1 MEMRVPAQLLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQGI-----SNGL 55
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
+WY QKPGQ+P LIY A++ +GVP RFSGSGSGTDFTL IS ++ EDV YYC Q
Sbjct: 56 SWYQQKPGQAPTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCLQDYT 115
Query: 386 SP 391
+P
Sbjct: 116 TP 117
>ref|XP_003403580.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 202
Score = 112 bits (281), Expect = 4e-25
Identities = 55/116 (47%), Positives = 76/116 (65%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
+R P Q W+PG+ I +TQ+P SLS S G+ +I+CR+SQ + N LNW
Sbjct: 80 VRAPTQLLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGI-----SNNLNW 134
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQA 379
Y QKPG++P+ LIY A++ +G+P RFS SGSGTD+TL IS ++ ED YYC Q+
Sbjct: 135 YQQKPGKTPKLLIYAASSLQSGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQS 190
>ref|XP_003403669.1| PREDICTED: hypothetical protein LOC642424 [Homo sapiens].
Length = 436
Score = 112 bits (281), Expect = 4e-25
Identities = 55/116 (47%), Positives = 76/116 (65%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
+R P Q W+PG+ I +TQ+P SLS S G+ +I+CR+SQ + N LNW
Sbjct: 314 VRAPTQLLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGI-----SNNLNW 368
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQA 379
Y QKPG++P+ LIY A++ +G+P RFS SGSGTD+TL IS ++ ED YYC Q+
Sbjct: 369 YQQKPGKTPKLLIYAASSLQSGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQS 424
>ref|XP_003403578.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 123
Score = 112 bits (279), Expect = 7e-25
Identities = 55/120 (45%), Positives = 76/120 (63%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MR P Q W+PG+ I +TQ+P SLS S G+ +I+CR+SQ + N LNW
Sbjct: 1 MRAPTQLLGLLVLWLPGARCDIQMTQSPSSLSASVGDRVTITCRASQGI-----SNNLNW 55
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPG++P+ LIY A++ +G+P RFS SGSG D+TL I ++ ED YYC Q+ +P
Sbjct: 56 YQQKPGKTPKLLIYAASSLQSGIPSRFSDSGSGADYTLTIRSLQPEDFATYYCQQSDSTP 115
>ref|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 164
Score = 110 bits (276), Expect = 1e-24
Identities = 55/120 (45%), Positives = 76/120 (63%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
+R P Q W+PG+ I +TQ+P SLS S G +I+CR+SQ + N LNW
Sbjct: 42 VRAPTQLLGLLGLWLPGARCDIQMTQSPSSLSASVGGRVTITCRASQGI-----SNNLNW 96
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPG++P+ LIY A++ +G+P RFS SGSG D+TL IS ++ ED YYC Q+ +P
Sbjct: 97 YQQKPGKTPKLLIYAASSLQSGIPSRFSDSGSGADYTLTISSLQPEDFAAYYCQQSDSTP 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,259,187
Number of extensions: 905104
Number of successful extensions: 3905
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3830
Number of HSP's successfully gapped: 31
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region... 117 2e-26
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 59 6e-09
Alignment gi|NP_001171117.1| tyrosine-protein phosphatase non-receptor ty... 57 2e-08
Alignment gi|NP_031573.2| tyrosine-protein phosphatase non-receptor type ... 57 2e-08
Alignment gi|NP_001166930.1| signal-regulatory protein beta 1-like [Mus m... 56 5e-08
Alignment gi|NP_001002898.1| signal-regulatory protein beta 1 [Mus muscul... 54 2e-07
Alignment gi|NP_001166931.1| signal-regulatory protein beta 1B [Mus muscu... 53 4e-07
Alignment gi|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus]. 51 2e-06
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 50 3e-06
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 50 3e-06
>ref|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region L7 precursor [Mus
musculus].
Length = 216
Score = 117 bits (292), Expect = 2e-26
Identities = 63/129 (48%), Positives = 82/129 (63%)
Frame = +2
Query: 14 LRSQLTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDG 193
LR L M +Q W S IV+TQ+P +LSV+PG+ S+SCR+SQS+
Sbjct: 78 LRENLKMVSTSQLLGLLLFWTSASRCDIVMTQSPATLSVTPGDRVSLSCRASQSI----- 132
Query: 194 KNYLNWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCF 373
+YL+WY QK +SP+ LI A+ +G+P RFSGSGSG+DFTL I+ VE EDVGVYYC
Sbjct: 133 SDYLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINSVEPEDVGVYYC- 191
Query: 374 QALQSPHGF 400
Q+ H F
Sbjct: 192 ---QNGHSF 197
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 58.9 bits (141), Expect = 6e-09
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Frame = +2
Query: 398 FGAGTKLE-LKRADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQS 574
FG GT+L L + + P V +F PS + L+ ++VCL++ F+P + V WKVDGV +
Sbjct: 94 FGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVT 153
Query: 575 SGILDSVTEQDSK--DXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
G+ T Q SK + H+ YSC VTH+ + + KS + EC
Sbjct: 154 QGV---ETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHE--GNTVEKSVSPAEC 208
>ref|NP_001171117.1| tyrosine-protein phosphatase non-receptor type substrate 1 isoform
1 [Mus musculus].
Length = 509
Score = 57.0 bits (136), Expect = 2e-08
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 12/219 (5%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA-----TN 265
+TQ S+SV+ G+ ++C + SLL + WY G P RL+ +
Sbjct: 36 VTQPEKSVSVAAGDSTVLNCTLT-SLLPVGP---IRWYR---GVGPSRLLIYSFAGEYVP 88
Query: 266 RDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC--FQALQSPHG----FGAGTKLELK 427
R V D + + DF+++IS V D G+YYC FQ S G GT++ +
Sbjct: 89 RIRNVSD--TTKRNNMDFSIRISNVTPADAGIYYCVKFQKGSSEPDTEIQSGGGTEVYVL 146
Query: 428 RADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQD 607
+ P V P+ + Q V+ C + F PR + +KW DG Q L++
Sbjct: 147 AKPSPPEV--SGPADRGIPDQKVNFTCKSHGFSPRNITLKWFKDG--QELHPLETTVNPS 202
Query: 608 SKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTL-ASPL 721
K+ ++ CEV H TL SPL
Sbjct: 203 GKNVSYNISSTVRVVLNSMDVNSKVICEVAHITLDRSPL 241
>ref|NP_031573.2| tyrosine-protein phosphatase non-receptor type substrate 1 isoform
1 [Mus musculus].
Length = 509
Score = 57.0 bits (136), Expect = 2e-08
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 12/219 (5%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA-----TN 265
+TQ S+SV+ G+ ++C + SLL + WY G P RL+ +
Sbjct: 36 VTQPEKSVSVAAGDSTVLNCTLT-SLLPVGP---IRWYR---GVGPSRLLIYSFAGEYVP 88
Query: 266 RDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC--FQALQSPHG----FGAGTKLELK 427
R V D + + DF+++IS V D G+YYC FQ S G GT++ +
Sbjct: 89 RIRNVSD--TTKRNNMDFSIRISNVTPADAGIYYCVKFQKGSSEPDTEIQSGGGTEVYVL 146
Query: 428 RADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQD 607
+ P V P+ + Q V+ C + F PR + +KW DG Q L++
Sbjct: 147 AKPSPPEV--SGPADRGIPDQKVNFTCKSHGFSPRNITLKWFKDG--QELHPLETTVNPS 202
Query: 608 SKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTL-ASPL 721
K+ ++ CEV H TL SPL
Sbjct: 203 GKNVSYNISSTVRVVLNSMDVNSKVICEVAHITLDRSPL 241
>ref|NP_001166930.1| signal-regulatory protein beta 1-like [Mus musculus].
Length = 391
Score = 55.8 bits (133), Expect = 5e-08
Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 10/207 (4%)
Frame = +2
Query: 119 SLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATN----RDTGVPD 286
S V G A+++C + SLL + W+ + GQS + LIY T R T V D
Sbjct: 39 SFFVGAGGSATLNCTVT-SLLPVGP---IRWF-KGVGQS-RLLIYSFTGERFPRITNVSD 92
Query: 287 RFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHG------FGAGTKLELKRADAKPS 448
S DF+++IS V D G YYC + + P G GT+L + + P
Sbjct: 93 --VTKRSNLDFSIRISNVTPADSGTYYCVKFQRGPSEPDMEIQSGGGTELSVFAKPSSPM 150
Query: 449 VFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQDSKDXXXX 628
V P+ + QTV+ C + FFPR + +KW +G L++ E +
Sbjct: 151 VS--GPAARAVPQQTVAFTCRSHGFFPRNLTLKWFKNG--NEISHLETSVEPEETSVSYR 206
Query: 629 XXXXXXXXXXXXXXHNLYSCEVTHKTL 709
+ CEV H TL
Sbjct: 207 VSSTVQVVLEPRDVRSQIICEVDHVTL 233
>ref|NP_001002898.1| signal-regulatory protein beta 1 [Mus musculus].
Length = 391
Score = 53.9 bits (128), Expect = 2e-07
Identities = 65/224 (29%), Positives = 91/224 (40%), Gaps = 14/224 (6%)
Frame = +2
Query: 80 GSDGAIV----LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRL 247
G GA V + Q S V G A+++C + SLL + WY + GQS + L
Sbjct: 22 GFKGAAVRELKVIQPVKSFFVGAGGSATLNCTVT-SLLPVGP---IRWY-RGVGQS-RLL 75
Query: 248 IYQATN----RDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC--FQALQSPHGF--- 400
IY T R T V D + DF+++IS V D G YYC FQ S
Sbjct: 76 IYPFTGEHSPRITNVSD--VTKRNNMDFSIRISNVTPADSGTYYCVKFQRGSSEPDIEIQ 133
Query: 401 -GAGTKLELKRADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSS 577
G GT+L + + P V P+ + QTV+ C + FFPR + +KW +G
Sbjct: 134 SGGGTELLVLAKPSSPMVS--GPAARAVPQQTVTFTCRSHGFFPRNLTLKWFKNG--DEI 189
Query: 578 GILDSVTEQDSKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTL 709
L++ E + + CEV H TL
Sbjct: 190 SHLETSVEPEETSVSYRVSSTVQVVLEPRDVRSQIICEVDHVTL 233
>ref|NP_001166931.1| signal-regulatory protein beta 1B [Mus musculus].
Length = 391
Score = 52.8 bits (125), Expect = 4e-07
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 11/208 (5%)
Frame = +2
Query: 119 SLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATN-----RDTGVP 283
S V G A+++C + SLL + WY G RL+ Q+ R T V
Sbjct: 39 SFFVGAGGSATLNCTVT-SLLPVGP---IRWYR---GVGQSRLLIQSFTGEHFPRITSVS 91
Query: 284 DRFSGSGSGTDFTLKISRVEAEDVGVYYC--FQALQSPHG----FGAGTKLELKRADAKP 445
D + DF+++IS V D G YYC FQ S G GT+L + + P
Sbjct: 92 D--VTKRNNLDFSIRISNVTPADSGTYYCVKFQRGSSESDREIQSGGGTELSVLAKPSSP 149
Query: 446 SVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQDSKDXXX 625
V P+ + QTV+ C + FFPR + +KW +G L++ E +
Sbjct: 150 MVS--GPAARAVPKQTVTFTCRSHGFFPRNLTLKWFKNG--NEISHLETSVEPEETSVSY 205
Query: 626 XXXXXXXXXXXXXXXHNLYSCEVTHKTL 709
+ CEV H TL
Sbjct: 206 RVSSTVQVVLEPRDVRSQIICEVDHVTL 233
>ref|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].
Length = 123
Score = 50.8 bits (120), Expect = 2e-06
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATN---RD 271
LTQ P + SV PG+ A +SC + S T G ++WY Q+PG +P L Y A R
Sbjct: 23 LTQ-PDAFSVFPGQDAHLSC-TINSQHATAGDIGVSWYQQQPGSAPHLLYYYAEEEHYRP 80
Query: 272 TGVPDRFSGS--GSGTDFTLKISRVEAEDVGVYYC 370
+PDRFS + + L IS V ED Y+C
Sbjct: 81 ADIPDRFSATVDAAHNACILTISPVLPEDDADYFC 115
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 50.1 bits (118), Expect = 3e-06
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Frame = +2
Query: 107 QTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNRD----T 274
Q PL+ S S G +SC S H G + WY Q+PG P+ L+ ++ D
Sbjct: 25 QPPLASS-SLGATIRLSCTLSND--HNIGIYSIYWYQQRPGHPPRFLLRYFSHSDKHQGP 81
Query: 275 GVPDRFSGSGSGTDFT--LKISRVEAEDVGVYYCFQALQS 388
+P RFSGS T L IS ++ ED VYYC L+S
Sbjct: 82 DIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYCAVGLRS 121
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 49.7 bits (117), Expect = 3e-06
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNRD--- 271
+ P S S S G +SC S H G + WY Q+PG P+ L+ ++ D
Sbjct: 22 MVHQPPSASSSLGATIRLSCTLSND--HNIGIYSIYWYQQRPGHPPRFLLRYFSHSDKHQ 79
Query: 272 -TGVPDRFSGSGSGTDFT--LKISRVEAEDVGVYYCFQALQS 388
+P RFSGS L IS ++ ED VYYC L+S
Sbjct: 80 GPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYCAVGLRS 121
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,389,720
Number of extensions: 745644
Number of successful extensions: 3216
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3179
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6... 189 2e-48
Alignment gi|XP_003354779.1| PREDICTED: ig kappa chain V-II region RPMI 6... 186 2e-47
Alignment gi|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6... 174 9e-44
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 136 2e-32
Alignment gi|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-l... 119 3e-27
Alignment gi|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-l... 119 3e-27
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 116 2e-26
Alignment gi|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670... 88 6e-18
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 86 2e-17
Alignment gi|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797... 75 7e-14
>ref|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 126
Score = 189 bits (481), Expect = 2e-48
Identities = 94/120 (78%), Positives = 100/120 (83%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS GAIVLTQTPLSLSVSPGEPASISCRS+QSL + GKNYLNW
Sbjct: 1 MRFPAQLLGLPLLWVPGSSGAIVLTQTPLSLSVSPGEPASISCRSTQSLRGSYGKNYLNW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPGQSP+ LIY ATNR +GVPDRFSGS SGTDFTLKI R+EAED GVYYC Q +QSP
Sbjct: 61 YQQKPGQSPKLLIYWATNRASGVPDRFSGSRSGTDFTLKIIRLEAEDAGVYYCLQDIQSP 120
>ref|XP_003354779.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 126
Score = 186 bits (472), Expect = 2e-47
Identities = 93/120 (77%), Positives = 99/120 (82%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS GAIVLTQTPLSLSVSPGEPASISCRS+QSL + GKNYLNW
Sbjct: 1 MRFPAQLLGLPLLWVPGSSGAIVLTQTPLSLSVSPGEPASISCRSTQSLRGSYGKNYLNW 60
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSP 391
Y QKPGQSP+ LIY ATNR +GVPDRFSGS SGTDFTLKI R+EAED GVY C Q +QSP
Sbjct: 61 YQQKPGQSPKLLIYWATNRASGVPDRFSGSRSGTDFTLKIIRLEAEDAGVYSCLQDIQSP 120
>ref|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 194
Score = 174 bits (440), Expect = 9e-44
Identities = 89/119 (74%), Positives = 97/119 (81%)
Frame = +2
Query: 32 MRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNW 211
MRFPAQ WVPGS GAIVLTQ+PLSLSVSPG PASISCRSSQSL + N+L+W
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGAIVLTQSPLSLSVSPGAPASISCRSSQSL-ESYSYNFLSW 59
Query: 212 YLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQS 388
Y QKPGQSP+ LIY ATN+ +GVPDRFSGSGSGTDFTLKISRVEAED GVYYC Q +S
Sbjct: 60 YQQKPGQSPRLLIYFATNKASGVPDRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNKES 118
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 136 bits (342), Expect = 2e-32
Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 3/219 (1%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNRDTGV 280
LTQ P +SVS G ASI+C+ G Y +WY QKPGQSP +IY+ R +G+
Sbjct: 23 LTQPP-GVSVSLGGTASITCQGGNF-----GSYYAHWYKQKPGQSPMLVIYEYNKRASGI 76
Query: 281 PDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHG--FGAGTKLE-LKRADAKPSV 451
PDRFSGS SG TL IS +AED YYC + S G FG GT+L L++ A P+V
Sbjct: 77 PDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGRGTRLSVLRQPKAAPTV 136
Query: 452 FIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQDSKDXXXXX 631
+FPPS E+L T ++VCL++ F+P V V WK G + G+ + + S +
Sbjct: 137 NLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNNKYAAS 196
Query: 632 XXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
++C+VTH+ + + K+ +EC
Sbjct: 197 SYLALSASDWKSSSG-FTCQVTHE--GTIVEKTVTPSEC 232
>ref|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 119 bits (297), Expect = 3e-27
Identities = 60/122 (49%), Positives = 79/122 (64%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
+ MR P Q W+PG+ AI LTQ+P SL+ S G+ SI+CR+SQS+ +L
Sbjct: 1 MDMRAPMQLLSLLLLWLPGARSAIQLTQSPASLAASLGDTVSITCRASQSI-----NKWL 55
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
WY Q+ G++P+ LIY A+ +GVP RF GSGSGTDFTL IS ++AEDV YYC Q
Sbjct: 56 AWYQQQAGKAPKLLIYSASTLQSGVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHS 115
Query: 386 SP 391
+P
Sbjct: 116 AP 117
>ref|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 119 bits (297), Expect = 3e-27
Identities = 60/122 (49%), Positives = 79/122 (64%)
Frame = +2
Query: 26 LTMRFPAQXXXXXXXWVPGSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYL 205
+ MR P Q W+PG+ AI LTQ+P SL+ S G+ SI+CR+SQS+ +L
Sbjct: 1 MDMRAPMQLLGLLLLWLPGARSAIQLTQSPASLAASLGDTVSITCRASQSI-----NKWL 55
Query: 206 NWYLQKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQ 385
WY Q+ G++P+ LIY A+ +GVP RF GSGSGTDFTL IS ++AEDV YYC Q
Sbjct: 56 AWYQQQAGKAPKLLIYSASTLQSGVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHS 115
Query: 386 SP 391
+P
Sbjct: 116 AP 117
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 116 bits (290), Expect = 2e-26
Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 5/228 (2%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCR-SSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQ 256
G D V+ + ++SVS G +++C SS S+ +D Y W+ Q PGQ P+ +IY
Sbjct: 16 GVDSQTVIQEP--AMSVSLGGTVTLTCAFSSGSVTSSD---YPGWFQQTPGQPPRTVIYS 70
Query: 257 ATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHG---FGAGTKLE-L 424
+R TGVP RFSG+ SG TL I+ +AED Y+C AL+ G FG GT + L
Sbjct: 71 TNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFC--ALRKSGGTVTFGGGTHVTVL 128
Query: 425 KRADAKPSVFIFPPSKEQLETQTVSVVCLLNSFFPREVNVKWKVDGVVQSSGILDSVTEQ 604
+ A P+V +FPPS E+L T ++VCL++ F+P V V WK G + G+ + +
Sbjct: 129 GQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSK 188
Query: 605 DSKDXXXXXXXXXXXXXXXXXXHNLYSCEVTHKTLASPLVKSFNRNEC 748
S + ++C+VTH+ + + K+ +EC
Sbjct: 189 QSNNKYAASSYLALSASDWKSSSG-FTCQVTHE--GTIVEKTVTPSEC 233
>ref|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670 [Sus scrofa].
Length = 276
Score = 88.2 bits (217), Expect = 6e-18
Identities = 49/112 (43%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA 259
GS + +TQ P S+SV+PG+ ASI+C + G+ + WY QKPGQ+P IY+
Sbjct: 16 GSVASYEVTQPP-SVSVNPGQRASITCEGNNI-----GRKDIQWYQQKPGQAPVLFIYED 69
Query: 260 TNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC--FQALQSPHGFGAG 409
TNR +G+P+RFS S SG TL IS +AED YYC + +PH G
Sbjct: 70 TNRPSGIPERFSASKSGNTATLTISGAQAEDEADYYCQSYDDSYTPHSDTGG 121
Score = 55.8 bits (133), Expect = 3e-08
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +2
Query: 218 QKPGQSPQRLIYQATNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYY 367
QKPGQ+P +IY + R G+P+RFSGS SG TL IS +AED YY
Sbjct: 145 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 194
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 86.3 bits (212), Expect = 2e-17
Identities = 53/111 (47%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Frame = +2
Query: 101 LTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQATNRDTGV 280
LTQ P +SVS G ASI+C+ G Y +WY QKPGQSP +IY+ R +G+
Sbjct: 23 LTQPP-GVSVSLGGTASIACQGDNF-----GSYYAHWYQQKPGQSPMLVIYEYNKRASGI 76
Query: 281 PDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQS--PH----GFGAGTK 415
PDRFSGS SG TL IS +AED YYC + S PH G G GT+
Sbjct: 77 PDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSYTPHSDTGGGGRGTQ 127
>ref|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797 [Sus scrofa].
Length = 484
Score = 74.7 bits (182), Expect = 7e-14
Identities = 46/123 (37%), Positives = 65/123 (52%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA 259
G D V+ + ++SVS G +++C S + + NY +WY Q PGQ P++LIY
Sbjct: 45 GVDSQTVIQEP--AMSVSLGGTVTLTCAFSSGSVTSS--NYPSWYQQTPGQPPRQLIYST 100
Query: 260 TNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQALQSPHGFGAGTKLELKRADA 439
+R TGVP RFSG+ SG TL I+ +AED Y+C S H E + D
Sbjct: 101 NSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALYKGSGHP-------EAEERDL 153
Query: 440 KPS 448
+PS
Sbjct: 154 EPS 156
Score = 61.6 bits (148), Expect = 6e-10
Identities = 39/97 (40%), Positives = 52/97 (53%)
Frame = +2
Query: 80 GSDGAIVLTQTPLSLSVSPGEPASISCRSSQSLLHTDGKNYLNWYLQKPGQSPQRLIYQA 259
GS VLTQ P S S S G+ ++SC S S + G N +NW PG+ P+ + A
Sbjct: 218 GSWAQAVLTQPP-SESGSLGQRVTLSCTGSSS--NIGGGNSVNWSQPLPGKVPRSVFTYA 274
Query: 260 TNRDTGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC 370
PD+FSG SG+ TL I+ ++AED YYC
Sbjct: 275 NLMAIAAPDQFSGFKSGSSGTLTITGLQAEDDAEYYC 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,159,255
Number of extensions: 617421
Number of successful extensions: 2417
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2399
Number of HSP's successfully gapped: 22
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007063
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 652 0.0
gb|GL896238.2| Sus scrofa unplaced genomic scaffold ChrUScaf4122 410 e-112
>Sscrofa_Chr03
|| Length = 144787322
Score = 652 bits (329), Expect = 0.0
Identities = 329/329 (100%)
Strand = Plus / Minus
Query: 429 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881322 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 59881263
Query: 489 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881262 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 59881203
Query: 549 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881202 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 59881143
Query: 609 gcaaggacagcacctacagcctcagcagcaccctctcgctgcccacgtcacagtacctaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881142 gcaaggacagcacctacagcctcagcagcaccctctcgctgcccacgtcacagtacctaa 59881083
Query: 669 gtcataatttatattcctgtgaggtcacccacaagaccctggcctcccctctggtcaaaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59881082 gtcataatttatattcctgtgaggtcacccacaagaccctggcctcccctctggtcaaaa 59881023
Query: 729 gcttcaacaggaacgagtgtgaggcttag 757
|||||||||||||||||||||||||||||
Sbjct: 59881022 gcttcaacaggaacgagtgtgaggcttag 59880994
Score = 644 bits (325), Expect = 0.0
Identities = 328/329 (99%)
Strand = Plus / Plus
Query: 429 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720180 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 59720239
Query: 489 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720240 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 59720299
Query: 549 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720300 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 59720359
Query: 609 gcaaggacagcacctacagcctcagcagcaccctctcgctgcccacgtcacagtacctaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720360 gcaaggacagcacctacagcctcagcagcaccctctcgctgcccacgtcacagtacctaa 59720419
Query: 669 gtcataatttatattcctgtgaggtcacccacaagaccctggcctcccctctggtcaaaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720420 gtcataatttatattcctgtgaggtcacccacaagaccctggcctcccctctggtcaaaa 59720479
Query: 729 gcttcaacaggaacgagtgtgaggcttag 757
|||||| ||||||||||||||||||||||
Sbjct: 59720480 gcttcagcaggaacgagtgtgaggcttag 59720508
Score = 622 bits (314), Expect = e-176
Identities = 314/314 (100%)
Strand = Plus / Minus
Query: 79 aggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctgg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59962799 aggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctgg 59962740
Query: 139 agagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaagaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59962739 agagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaagaa 59962680
Query: 199 ttatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcaggc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59962679 ttatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcaggc 59962620
Query: 259 taccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagattt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59962619 taccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagattt 59962560
Query: 319 caccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaagc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59962559 caccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaagc 59962500
Query: 379 tttacaatctcctc 392
||||||||||||||
Sbjct: 59962499 tttacaatctcctc 59962486
Score = 456 bits (230), Expect = e-125
Identities = 293/314 (93%)
Strand = Plus / Plus
Query: 79 aggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctgg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59635092 aggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctgg 59635151
Query: 139 agagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaagaa 198
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |
Sbjct: 59635152 agagccggcctccatctcctgcaggtccagtcagagcctcgtagacagtgatggagactc 59635211
Query: 199 ttatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcaggc 258
||| | |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 59635212 gctattgcactggtacctgcagaaaccaggccagtctccacagctcctgatctatgaggc 59635271
Query: 259 taccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagattt 318
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 59635272 taccaacagggcctctggggtcccagacaggttcagtggcagtgggtcaggcacagattt 59635331
Query: 319 caccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaagc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59635332 caccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaagc 59635391
Query: 379 tttacaatctcctc 392
||||||||||||||
Sbjct: 59635392 tttacaatctcctc 59635405
Score = 387 bits (195), Expect = e-105
Identities = 285/315 (90%)
Strand = Plus / Minus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 59977372 caggatccagtggggccattgtgctgacccagactccactctcgctgtcagtcagccctg 59977313
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||| ||||||||||| | | | |||||||||
Sbjct: 59977312 gagagccggcctccatctcctgcaggtccactcagagcctccgaggtagttatggaaaga 59977253
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct: 59977252 attatttgaattggtacctgcagaaaccaggccagtctccaaagctcttgatctattggg 59977193
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| |||||||||||| |||||||||||||||| | ||||| || ||||
Sbjct: 59977192 ctaccaacagggcctctggggtcccaggcaggttcagtggcagtaggtcagggaccgatt 59977133
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaag 377
||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 59977132 tcaccctgaaaatcatcaggctggaggctgaggatgctggagtttattactgtttgcaag 59977073
Query: 378 ctttacaatctcctc 392
| ||||||||||||
Sbjct: 59977072 atatacaatctcctc 59977058
Score = 379 bits (191), Expect = e-102
Identities = 284/315 (90%)
Strand = Plus / Plus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 59620496 caggatccagtggggccattgtgctgacccagactccactctccctgtccgtcagccctg 59620555
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||| ||||||||||| | | | |||||||||
Sbjct: 59620556 gagagccggcctccatctcctgcaggtccactcagagcctccgaggtagttatggaaaga 59620615
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||
Sbjct: 59620616 attatttgaattggtaccagcagaaaccaggccagtctccaaagctcttgatctattggg 59620675
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| ||||||||||||||||||||||||||||| | ||||| || ||||
Sbjct: 59620676 ctaccaacagggcctctggggtcccagacaggttcagtggcagtaggtcagggaccgatt 59620735
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaag 377
||||||||||||||| |||| ||||||||||||||| |||||||||| |||||| ||||
Sbjct: 59620736 tcaccctgaaaatcatcaggctggaggctgaggatgctggagtttattcctgtttgcaag 59620795
Query: 378 ctttacaatctcctc 392
| ||||||||||||
Sbjct: 59620796 atatacaatctcctc 59620810
Score = 371 bits (187), Expect = e-100
Identities = 283/315 (89%)
Strand = Plus / Minus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 59762393 caggatccagtggggccattgtgctgacccagactccactctcgctgtcagtcagccctg 59762334
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||| ||||||||||| | | |||||||||
Sbjct: 59762333 gagagccggcctccatctcctgcaggtccactcagagcctccgtggtagttatggaaaga 59762274
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||
Sbjct: 59762273 attatttgaattggtaccagcagaaaccaggccagtctccaaagctcttgatctattggg 59762214
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| ||||||||||||||||||||||||||||| | ||||| || ||||
Sbjct: 59762213 ctaccaacagggcctctggggtcccagacaggttcagtggcagtaggtcagggaccgatt 59762154
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactgttttcaag 377
||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 59762153 tcaccctgaaaatcatcaggctggaggctgaggatgctggagtttattactgtttgcaag 59762094
Query: 378 ctttacaatctcctc 392
| |||| |||||||
Sbjct: 59762093 atatacagtctcctc 59762079
Score = 353 bits (178), Expect = 1e-94
Identities = 252/276 (91%), Gaps = 3/276 (1%)
Strand = Plus / Minus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59749904 caggatccagtggggccatcgtgctgacccagactccactctccctgtcagtcagccctg 59749845
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||||||||||||| | | ||||||| |
Sbjct: 59749844 gagagccggcctccatctcctgcaggtccagtcagagccttg---agatatatggaaaca 59749788
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct: 59749787 attttttgagttggtaccagcagaaaccaggccagtctccacagctcctgatctatgagg 59749728
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 59749727 ctaccaacagggcctctggggtcccagacaggttcagtggcagtgggtcaggcacagatt 59749668
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatg 353
||||||||||||||||||||||||||||||||||||
Sbjct: 59749667 tcaccctgaaaatcagcagggtggaggctgaggatg 59749632
Score = 345 bits (174), Expect = 3e-92
Identities = 263/292 (90%), Gaps = 3/292 (1%)
Strand = Plus / Plus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59648444 caggatccagtggggccatcgtgctgacccagactccactctccctgtcagtcagccctg 59648503
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||||||||||||| | | |||||| |
Sbjct: 59648504 gagagccggcctccatctcctgcaggtccagtcagagccttg---agatatatggaagca 59648560
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct: 59648561 atttcttgagttggtaccagcagaaaccaggccagtctccacagctcctgatctatgagg 59648620
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 59648621 ctaccaacagggcctctggggtcccagacaggttcagtggcagtgggtcaggcacagatt 59648680
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
|||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 59648681 tcaccctgaaaatcagcagggtggaggctgaggatgcaggcgtttattactg 59648732
Score = 335 bits (169), Expect = 3e-89
Identities = 263/292 (90%), Gaps = 3/292 (1%)
Strand = Plus / Plus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59986296 caggatccagtggggccatcgtgctgacccagactccactctccctgtcagtcagccctg 59986355
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||||||||||||| | | | |||||| |
Sbjct: 59986356 gagagccggcctccatctcctgcaggtccagtcagagcct--tgaggaat-atggaagca 59986412
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct: 59986413 atttgttgagttggtaccagcagaaaccaggccagtctccacagctcctgatctatgagg 59986472
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 59986473 ctaccaacagggcctctggggtcccagacaggttcagcggcagtgggtcaggcacagatt 59986532
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
|||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 59986533 tcaccctgaaaatcagcagggtggaggctgaggatgcaggcgtttattactg 59986584
Score = 311 bits (157), Expect = 4e-82
Identities = 248/276 (89%), Gaps = 3/276 (1%)
Strand = Plus / Minus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59935206 caggatccagtggggccatcgtgctgacccagactccactctccctgtcagtcagccctg 59935147
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||||||||||||||||||||||||||| | | | |||||| |
Sbjct: 59935146 gagagccggcctccatctcctgcaggtccagtcagagcct--tgaggaat-atggaagca 59935090
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct: 59935089 atttgttgagttggtaccagcagaaaccaggccagtctccacagctcctgatctatggtg 59935030
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 59935029 gtaccaacagggcctctggggtcccagacaggttcagtggcagtgggtcaggcacagatt 59934970
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatg 353
||||||||||||||||||||||||||||||||||||
Sbjct: 59934969 tcaccctgaaaatcagcagggtggaggctgaggatg 59934934
Score = 293 bits (148), Expect = 9e-77
Identities = 256/292 (87%)
Strand = Plus / Minus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59950040 caggatccagtggggccatcgtgctgacccagactccactctccctgtcagtcagccctg 59949981
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
|||||||||||||||| |||||||||||||||||||||||| || ||| ||||||| |
Sbjct: 59949980 gagagccggcctccatttcctgcaggtccagtcagagcctcgtagacagtgatggagact 59949921
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| | |||||||||||||||||||||||||| ||| || || ||||| |
Sbjct: 59949920 cgctattgcactggtacctgcagaaaccaggccagtcgccaaggctcttattctattttg 59949861
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||||||||||| || |||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 59949860 ctaccaacagggcctcttgggtcccagagaggttcagtggcagtgggtcaggcacagatt 59949801
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
|||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 59949800 tcaccctgaaaatcagcagggtggaggctgaggatgcaggcgtttattactg 59949749
Score = 276 bits (139), Expect = 2e-71
Identities = 253/291 (86%)
Strand = Plus / Plus
Query: 79 aggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctgg 138
||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 142680683 aggatccagtggggccatcgtgctgacccagaccccacttcccctgtcagtcagccctgg 142680742
Query: 139 agagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaagaa 198
|||||| | |||||||||||| | ||||||||||||||||||||||| | | |||| ||
Sbjct: 142680743 agagccagtctccatctcctgtaagtccagtcagagcctcctacacagaggtagaaacaa 142680802
Query: 199 ttatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcaggc 258
|||| || |||||||||||||||||||||||||||||| ||| |||||||| | ||
Sbjct: 142680803 ttatctgcattggtacctgcagaaaccaggccagtctctacaaaacctgatctattatgc 142680862
Query: 259 taccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagattt 318
|||||||| | |||||||||| |||||||||||||||||||| | ||| ||||||||
Sbjct: 142680863 taccaacacagcctctggggtccctgacaggttcagtggcagtgggttagggacagattt 142680922
Query: 319 caccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
|||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 142680923 caccctaaaaatcagcagcatggaggctgaggatgtgggagttcattactg 142680973
Score = 242 bits (122), Expect = 3e-61
Identities = 250/292 (85%), Gaps = 3/292 (1%)
Strand = Plus / Plus
Query: 78 caggatccgatggggccattgtgctgacccagactccactctccctgtcagtcagccctg 137
|||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 59663228 caggatccagtggggccatcgtgctgacccagagtccactctccctgtcagtcagccctg 59663287
Query: 138 gagagccggcctccatctcctgcaggtccagtcagagcctcctacacactgatggaaaga 197
||| ||||||||||||||||||||||||||||||||| ||| | | | || | | |
Sbjct: 59663288 gagcgccggcctccatctcctgcaggtccagtcagag---ccttgagagttatagttaca 59663344
Query: 198 attatttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcagg 257
||| |||| |||||||| |||||||||||||||||| ||| || |||||||| |
Sbjct: 59663345 atttcttgagttggtaccagcagaaaccaggccagtcgccaaggctcctgatctattttg 59663404
Query: 258 ctaccaacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatt 317
|||| |||| || |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 59663405 ctacaaacaaggcctctggtgtcccagacaggttcagtggcagtgggtcaggcacagatt 59663464
Query: 318 tcaccctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
||||| |||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 59663465 tcaccttgaagatcagcagggtggaggctgaggatgcaggcgtttattactg 59663516
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59634633 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 59634692
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59634693 tcctgctctgggtcccagg 59634711
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59671012 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 59671071
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59671072 tcctgctctgggtcccagg 59671090
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59929955 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 59929896
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59929895 tcctgctctgggtcccagg 59929877
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59963258 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 59963199
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59963198 tcctgctctgggtcccagg 59963180
Score = 141 bits (71), Expect = 8e-31
Identities = 143/167 (85%)
Strand = Plus / Plus
Query: 203 ttgaattggtacctgcagaaaccaggccagtctccacagcgattgatctatcaggctacc 262
|||| |||||||| |||||||||||||||||| ||| || |||| ||| |||||
Sbjct: 59664741 ttgagttggtaccagcagaaaccaggccagtcgccaaggctcctgatttattttgctaca 59664800
Query: 263 aacagggatactggggtcccagacaggttcagtggcagtggatcaggcacagatttcacc 322
|||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 59664801 aacaaggcctctggtgtcccagacaggttcagtggcagtgggtcaggcacagatttcacc 59664860
Query: 323 ctgaaaatcagcagggtggaggctgaggatgtgggagtttattactg 369
|||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 59664861 ttgaagatcagcagggtggaggctgaggatgcaggcgtttattactg 59664907
Score = 141 bits (71), Expect = 8e-31
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59750347 gatcagggctcctccgggcacagctgaccatgaggttccctgctcagctcctggggctcc 59750288
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59750287 tcctgctctgggtcccagg 59750269
Score = 133 bits (67), Expect = 2e-28
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59648001 gatcagggctcatccggacacagctgaccatgaggttccctgctcagctcctggggctcc 59648060
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59648061 tcctgctctgggtcccagg 59648079
Score = 133 bits (67), Expect = 2e-28
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59662786 gatcagggctcatccgggcacagctgaccatgaggttccctgctcagctcctggggctcc 59662845
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59662846 tcctgctctgggtcccagg 59662864
Score = 133 bits (67), Expect = 2e-28
Identities = 76/79 (96%)
Strand = Plus / Minus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59935649 gatcagggctcatccgggcacagctgaccatgaggttccctgctcagctcctggggctcc 59935590
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59935589 tcctgctctgggtcccagg 59935571
Score = 133 bits (67), Expect = 2e-28
Identities = 76/79 (96%)
Strand = Plus / Minus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59950498 gatcagggctcatccgggcacagctgaccatgaggttccctgctcagctcctggggctcc 59950439
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59950438 tcctgctctgggtcccagg 59950420
Score = 133 bits (67), Expect = 2e-28
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59985854 gatcagggctcatccgggcacagctgaccatgaggttccctgctcagctcctggggctcc 59985913
Query: 63 tcctgctctgggtcccagg 81
|||||||||||||||||||
Sbjct: 59985914 tcctgctctgggtcccagg 59985932
Score = 117 bits (59), Expect = 1e-23
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 3 gatcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcc 62
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 142680230 gatcagggctcctccattcacagctgaacatgaggttccctgctctgctcctggggctcc 142680289
Query: 63 tcctgctctgggtcccagg 81
|| ||||||| ||||||||
Sbjct: 142680290 tcttgctctgtgtcccagg 142680308
Score = 113 bits (57), Expect = 2e-22
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 5 tcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcctc 64
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 59620048 tcagggctcatctcttcacagctgaccatgaggttccctgctcagctcctgggactcccc 59620107
Query: 65 ctgctctgggtcccagg 81
|||||||||||||||||
Sbjct: 59620108 ctgctctgggtcccagg 59620124
Score = 113 bits (57), Expect = 2e-22
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 5 tcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcctc 64
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 59762840 tcagggctcatctcttcacagctgaccatgaggttccctgctcagctcctgggactcccc 59762781
Query: 65 ctgctctgggtcccagg 81
|||||||||||||||||
Sbjct: 59762780 ctgctctgggtcccagg 59762764
Score = 89.7 bits (45), Expect = 3e-15
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 5 tcagggctcctccgttcacagctgaccatgaggttccctgctcagctcctggggctcctc 64
||||||||| || |||||||||||||||||||||||||||| || ||||||| |||| |
Sbjct: 59977820 tcagggctcatctcttcacagctgaccatgaggttccctgct-agatcctgggactcccc 59977762
Query: 65 ctgctctgggtcccagg 81
|||||||||||||||||
Sbjct: 59977761 ctgctctgggtcccagg 59977745
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 393 atggtttcggcgcggggaccaagctggagctcaaacg 429
|||||||||||||||||||||||||||||||||||||
Sbjct: 59716348 atggtttcggcgcggggaccaagctggagctcaaacg 59716384
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 393 atggtttcggcgcggggaccaagctggagctcaaacg 429
|||||||||||||||||||||||||||||||||||||
Sbjct: 59885155 atggtttcggcgcggggaccaagctggagctcaaacg 59885119
Score = 67.9 bits (34), Expect = 1e-08
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 883 tttggctttaaccgtgttaatactgcnnnnnnnnnnnnaatgaataaataaagtgaacct 942
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 59880868 tttggctttaaccgtgttaatactgcggggggggggggaatgaataaataaagtgaacct 59880809
Query: 943 ttgcacctgt 952
||||||||||
Sbjct: 59880808 ttgcacctgt 59880799
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 921 aatgaataaataaagtgaacctttgcacctgt 952
||||||||||||||||||||||||||||||||
Sbjct: 59720670 aatgaataaataaagtgaacctttgcacctgt 59720701
>gb|GL896238.2| Sus scrofa unplaced genomic scaffold ChrUScaf4122
Length = 24961
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 429 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357 gggctgatgccaagccatccgtcttcatcttcccgccatcgaaggagcagttagagaccc 5416
Query: 489 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5417 aaactgtctctgtggtgtgcttgctcaatagcttcttccccagagaagtcaatgtcaagt 5476
Query: 549 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5477 ggaaagtggatggggtggtccaaagcagtggcatcctggatagtgtcacagagcaggaca 5536
Query: 609 gcaaggacagcacctacagcctcagca 635
|||||||||||||||||||||||||||
Sbjct: 5537 gcaaggacagcacctacagcctcagca 5563
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 651 ccacgtcacagtacctaagtcataatttatattcctgtgaggtcacccacaagaccctgg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5665 ccacgtcacagtacctaagtcataatttatattcctgtgaggtcacccacaagaccctgg 5724
Query: 711 cctcccctctggtcaaaagcttcaacagg 739
|||||||||||||||||||||||||||||
Sbjct: 5725 cctcccctctggtcaaaagcttcaacagg 5753
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 393 atggtttcggcgcggggaccaagctggagctcaaacg 429
|||||||||||||||||||||||||||||||||||||
Sbjct: 691 atggtttcggcgcggggaccaagctggagctcaaacg 727
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,625,581
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 46
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)