Animal-Genome cDNA 20110601C-007074


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029784.1| hemopexin precursor [Bos taurus].                 718   0.0  
Alignment   gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [...    62   1e-09
Alignment   gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos...    62   1e-09
Alignment   gi|NP_001193566.1| stromelysin-1 [Bos taurus].                        59   1e-08
Alignment   gi|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus].        55   1e-07
Alignment   gi|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos tau...    55   1e-07
Alignment   gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr...    55   2e-07
Alignment   gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane...    55   2e-07
Alignment   gi|XP_002695695.1| PREDICTED: matrix metallopeptidase 28 (epily...    54   4e-07
Alignment   gi|XP_001788282.2| PREDICTED: matrix metallopeptidase 28 (epily...    54   4e-07

>ref|NP_001029784.1| hemopexin precursor [Bos taurus].
          Length = 459

 Score =  718 bits (1853), Expect = 0.0
 Identities = 332/453 (73%), Positives = 370/453 (81%)
 Frame = +1

Query: 31   MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
            MARAL    A WLLGLC SLA AHPL+      HG EG N +KPDP+VTERCSDGWGFDA
Sbjct: 1    MARALRVPVALWLLGLCWSLAKAHPLARAPELGHGVEGGNVAKPDPEVTERCSDGWGFDA 60

Query: 211  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
            +TLDEHG MLF KG  VW G  W R LISERWK+APS VDAAFR   + V LI+GDK WV
Sbjct: 61   TTLDEHGNMLFLKGEFVWKGHAWARQLISERWKDAPSPVDAAFRYDRNSVLLIKGDKFWV 120

Query: 391  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
            YPPEK +E P+ LQE+FPG+P PLDAAVECHRGEC  EGV FFQG HTWFWD  TKT K+
Sbjct: 121  YPPEKGEEYPKLLQEKFPGIPFPLDAAVECHRGECSHEGVFFFQGNHTWFWDFSTKTIKK 180

Query: 571  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
            R WPAVGNCSSA+RW++RYYCFRGN+FLRFDPVTG V+  YPRDVRDYFMSCP+RGHAHR
Sbjct: 181  RSWPAVGNCSSAIRWLNRYYCFRGNKFLRFDPVTGEVNSTYPRDVRDYFMSCPNRGHAHR 240

Query: 751  NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 930
            NAT   D RCSP LVL+ALLSDNH ATYAF   HYWRLD+SRDGWHSW I+H W  GPS 
Sbjct: 241  NATQHMDKRCSPHLVLSALLSDNHSATYAFSENHYWRLDSSRDGWHSWRIEHLWPQGPST 300

Query: 931  VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1110
            VDAAF WD KLYLIQGTQVYIFLT+AGYTLV +YPKQLEKE GSP G+ L +VDA F CP
Sbjct: 301  VDAAFLWDKKLYLIQGTQVYIFLTRAGYTLVKDYPKQLEKEFGSPDGVCLHSVDAAFTCP 360

Query: 1111 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1290
            G+S+L++MAG+KLW LDL+LGAQ  WTELPW H KVD ALCTEKSLGP+SCSA+GLGLY+
Sbjct: 361  GSSQLYIMAGQKLWRLDLNLGAQATWTELPWLHTKVDGALCTEKSLGPHSCSANGLGLYL 420

Query: 1291 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
            V GP++YCYKDVE+L   K LPQ Q +NSLLGC
Sbjct: 421  VQGPNLYCYKDVEELSKTKDLPQAQRMNSLLGC 453


>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
 Frame = +1

Query: 121 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 288
           GP  GA+    +  +PD   + C     FDA+     G + FFK   VW   G     G 
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306

Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E     SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365

Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
            AA+       +   + FF+    W +    +     +      W  V     +A +   
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422

Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
            + Y  RG  + +FDPV       +PR V   F SC +  +  R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466


>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
 Frame = +1

Query: 121 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 288
           GP  GA+    +  +PD   + C     FDA+     G + FFK   VW   G     G 
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306

Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E     SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365

Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
            AA+       +   + FF+    W +    +     +      W  V     +A +   
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422

Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
            + Y  RG  + +FDPV       +PR V   F SC +  +  R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466


>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
          Length = 477

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
 Frame = +1

Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
           P+P     C     FDA STL   G +LFFKG   W     T      LIS  W + PS 
Sbjct: 282 PEPGTPAACDPALSFDAVSTL--RGEILFFKGRHFWRKSFRTFEPEFHLISSFWPSLPSG 339

Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
           +DAA+     D VF+ +G++ W +   E +   PR +    FP     +DAA      + 
Sbjct: 340 IDAAYEVTSKDTVFIFKGNQFWAIRGNEMQAGYPRGIHTLGFPSTVRKIDAAF----SDK 395

Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
           + +   FF     W +D K ++ +          +P V     +       YY F G+  
Sbjct: 396 EKKKTYFFAEDKYWRFDEKRQSMEPGFPKQIVEDFPGVESEVDAVFEVFGFYYFFSGSSQ 455

Query: 652 LRFDP 666
             FDP
Sbjct: 456 FEFDP 460


>ref|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus].
          Length = 591

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
 Frame = +1

Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
           + R+ + P  D+  RCS    FDA      G   FFKG   W      R L+S +     
Sbjct: 317 DNRSSTLPRKDMPHRCSAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQVH 372

Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPL 462
             W+  P    SVDA + R  D ++   +GD+ WV+     +E  PR + +   G+PS  
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDF--GLPS-- 428

Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKT------TKERLWPAV-GNCSSAMRWIS 621
              V+       ++   FF+    W +D  T+        +   W  V      AMRW  
Sbjct: 429 -GGVDAAFSWAHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSD 487

Query: 622 -RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
              Y FRG ++ +       V P YP+     ++ C D
Sbjct: 488 GAAYFFRGKEYWKVLDGELEVAPGYPQSTARDWLVCRD 525


>ref|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos taurus].
          Length = 591

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
 Frame = +1

Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
           + R+ + P  D+  RCS    FDA      G   FFKG   W      R L+S +     
Sbjct: 317 DNRSSTLPRKDMPHRCSAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQVH 372

Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPL 462
             W+  P    SVDA + R  D ++   +GD+ WV+     +E  PR + +   G+PS  
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDF--GLPS-- 428

Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKT------TKERLWPAV-GNCSSAMRWIS 621
              V+       ++   FF+    W +D  T+        +   W  V      AMRW  
Sbjct: 429 -GGVDAAFSWAHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSD 487

Query: 622 -RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
              Y FRG ++ +       V P YP+     ++ C D
Sbjct: 488 GAAYFFRGKEYWKVLDGELEVAPGYPQSTARDWLVCRD 525


>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 596

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           I + WK  P+ +DAA+ R   R    +GDK WV+     +          PG P  L   
Sbjct: 369 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 418

Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
             C   E  D  +         FF+G   W +  + + T         +W  +       
Sbjct: 419 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 477

Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
            +IS+     Y ++G  + +FD     V+P YPR++   +M C  +    R       D 
Sbjct: 478 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEAERRKERRLPQD- 536

Query: 778 CSPDLVLTALLSDNHGATYA 837
              D+ +   ++D  G+  A
Sbjct: 537 ---DVDIMVTINDVPGSVNA 553


>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 568

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           I + WK  P+ +DAA+ R   R    +GDK WV+     +          PG P  L   
Sbjct: 341 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 390

Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
             C   E  D  +         FF+G   W +  + + T         +W  +       
Sbjct: 391 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 449

Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
            +IS+     Y ++G  + +FD     V+P YPR++   +M C  +    R       D 
Sbjct: 450 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEAERRKERRLPQD- 508

Query: 778 CSPDLVLTALLSDNHGATYA 837
              D+ +   ++D  G+  A
Sbjct: 509 ---DVDIMVTINDVPGSVNA 525


>ref|XP_002695695.1| PREDICTED: matrix metallopeptidase 28 (epilysin)-like [Bos taurus].
          Length = 435

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
 Frame = +1

Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
           K   SS DA    G  R+++ QG++ W    +     PR L+E + G+P  ++AA     
Sbjct: 237 KYCHSSFDAVTVDGQQRLYVFQGNQFWEVTADGNVSEPRPLRERWAGLPPHIEAAAV--- 293

Query: 487 GECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGNQ 648
              +D    FF+G+  W F   K      +L  A G     + +     + R   F+G +
Sbjct: 294 -SLEDGDFYFFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAAFFFPPLRRLVLFKGTR 352

Query: 649 FLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGA 828
           +         V+P YPR +RD+    P+                     ++  L    G+
Sbjct: 353 YYVLAREGLQVEPYYPRGLRDWG-GVPEE--------------------VSGALPRPDGS 391

Query: 829 TYAFRGTHYWRLDTSR 876
              FR   YWRLD ++
Sbjct: 392 IIFFRDDRYWRLDQAK 407


>ref|XP_001788282.2| PREDICTED: matrix metallopeptidase 28 (epilysin)-like [Bos taurus].
          Length = 435

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
 Frame = +1

Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
           K   SS DA    G  R+++ QG++ W    +     PR L+E + G+P  ++AA     
Sbjct: 237 KYCHSSFDAVTVDGQQRLYVFQGNQFWEVTADGNVSEPRPLRERWAGLPPHIEAAAV--- 293

Query: 487 GECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGNQ 648
              +D    FF+G+  W F   K      +L  A G     + +     + R   F+G +
Sbjct: 294 -SLEDGDFYFFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAAFFFPPLRRLVLFKGTR 352

Query: 649 FLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGA 828
           +         V+P YPR +RD+    P+                     ++  L    G+
Sbjct: 353 YYVLAREGLQVEPYYPRGLRDWG-GVPEE--------------------VSGALPRPDGS 391

Query: 829 TYAFRGTHYWRLDTSR 876
              FR   YWRLD ++
Sbjct: 392 IIFFRDDRYWRLDQAK 407


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,454,868
Number of extensions: 1976952
Number of successful extensions: 9628
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9545
Number of HSP's successfully gapped: 18
Length of query: 514
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,140,958
Effective search space: 5755369906
Effective search space used: 5755369906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiar...   720   0.0  
Alignment   gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].            65   1e-10
Alignment   gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia...    58   3e-08
Alignment   gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-...    55   2e-07
Alignment   gi|XP_548256.2| PREDICTED: similar to matrix metalloproteinase ...    54   5e-07
Alignment   gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ...    53   9e-07
Alignment   gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ...    52   1e-06
Alignment   gi|XP_544383.2| PREDICTED: similar to matrix metalloproteinase ...    50   5e-06
Alignment   gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ...    50   8e-06

>ref|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiaris].
          Length = 458

 Score =  720 bits (1859), Expect = 0.0
 Identities = 335/463 (72%), Positives = 375/463 (80%), Gaps = 9/463 (1%)
 Frame = +1

Query: 31   MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
            MA ALG      LLGLC SLA+AHPLS      +G EG + ++  PDVTE C DGW FDA
Sbjct: 1    MAWALG------LLGLCWSLAVAHPLSPDGTHGNGTEGGSGARVKPDVTELCLDGWSFDA 54

Query: 211  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
            +TLDEHGAMLFFKG  VW    W R LISERW+N  S VDAAFRRGH+ VFL++GDKVWV
Sbjct: 55   TTLDEHGAMLFFKGEFVWKSHRWVRELISERWRNLTSPVDAAFRRGHNSVFLLKGDKVWV 114

Query: 391  YPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTK 567
            YPPEK+++  P+ LQEEFPG+PSP+DAAVECHRGECQDEGVLFF+G  TWFWD  T T K
Sbjct: 115  YPPEKKEQGYPKLLQEEFPGIPSPVDAAVECHRGECQDEGVLFFKGNQTWFWDLTTGTKK 174

Query: 568  ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAH 747
            ER WPAVG+CSSA+RW+SRYYCFRGNQFLRF+PVTG V PKYP DVRDYF+ CP RGH H
Sbjct: 175  ERSWPAVGHCSSALRWLSRYYCFRGNQFLRFNPVTGEVLPKYPLDVRDYFIPCPGRGHGH 234

Query: 748  RNATHRGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
            RN T  G+D        RCS  LVL+ALL+DNHGATYAF G+HYWRLDTSRDGWHSWPI 
Sbjct: 235  RNGTGHGNDTHHGREDMRCSAFLVLSALLTDNHGATYAFSGSHYWRLDTSRDGWHSWPIV 294

Query: 904  HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
            HQW  GPS VDAAFSWD+K+YLIQGTQVYIFLTK GYTLVD YPK+LEKE GSPHGI+L+
Sbjct: 295  HQWPQGPSTVDAAFSWDNKVYLIQGTQVYIFLTKGGYTLVDGYPKRLEKEFGSPHGINLE 354

Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
             VDA F CPGTSRLH+ AGR LWWLDL LGAQ  WTE+PWPHEKVD ALC EKSLGPNSC
Sbjct: 355  TVDAAFTCPGTSRLHIAAGRHLWWLDLKLGAQATWTEVPWPHEKVDGALCIEKSLGPNSC 414

Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCH 1392
            SA+G GLY++HG  +YCY DVEKL +AK+LPQPQ V SLLGC+
Sbjct: 415  SANGPGLYLIHGSDLYCYSDVEKLSTAKSLPQPQRVKSLLGCN 457


>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
          Length = 489

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 65/227 (28%), Positives = 88/227 (38%), Gaps = 17/227 (7%)
 Frame = +1

Query: 121 GPKHGAEGRN----ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWT 282
           GP+ G +       E +  PD  E   D      ST+   G + FFK   VW   G    
Sbjct: 273 GPQAGVDTNEIAPLEPEAPPDACEITFDA----VSTI--RGELFFFKAGFVWRLRGGRLQ 326

Query: 283 RG---LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVP 453
            G   L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E   + 
Sbjct: 327 PGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYNGEKPVLGPAPL-SELGLLG 385

Query: 454 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMR 612
           SP+ AA+       +   + FF G   W +   T+     +      W  V     +A R
Sbjct: 386 SPIQAALAWGP---EKNKIYFFGGRDYWRFHLSTRRVDSPVPRRATDWRGVPSEIDAAFR 442

Query: 613 WISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
               Y Y  RG  + +FDPV       +PR V   F  C +  +  R
Sbjct: 443 DADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCTEPANTFR 489


>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
          Length = 478

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
 Frame = +1

Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
           P P     C     FDA STL   G  LFFK    W     T      LIS  W + PS 
Sbjct: 283 PGPGTPAACDPTLSFDAISTL--RGEFLFFKDRHFWRKSLRTLEPGFYLISSFWPSLPSG 340

Query: 325 VDAAFRR-GHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
           +DAA+     D VF+ +G++ W +   E +   P+ +    FP     +DAAV     + 
Sbjct: 341 LDAAYEETSKDIVFIFKGNQFWAMRGTEVQAGYPKGIHTLGFPPTVKKIDAAV----FDK 396

Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
           + +   FF G   W +D K ++ +          +P V     +A      YY F G+  
Sbjct: 397 EKKKTYFFVGDKYWRFDEKRQSMEPGFPKQIAEDFPGVDSKVDAAFEAFGFYYFFNGSSQ 456

Query: 652 LRFDP 666
           L FDP
Sbjct: 457 LEFDP 461


>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
           (MMP-24) (Membrane-type matrix metalloproteinase 5)
           (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
           (MT5-MMP) [Canis familiaris].
          Length = 626

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           I + WK  P+ +DAA+ R   R    +GDK WV+     +          PG P  L   
Sbjct: 399 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 448

Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
             C   E  D  +         FF+G   W +  + + T         +W  +       
Sbjct: 449 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 507

Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
            +IS+     Y ++G  + +FD     V+P YPR++   +M C  +    R       D 
Sbjct: 508 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEVERRKERRLPQD- 566

Query: 778 CSPDLVLTALLSDNHGATYA 837
              D+ +   ++D  G+  A
Sbjct: 567 ---DVDIMVTINDVPGSVNA 583


>ref|XP_548256.2| PREDICTED: similar to matrix metalloproteinase 28 preproprotein
           isoform 1 [Canis familiaris].
          Length = 520

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 10/212 (4%)
 Frame = +1

Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA-VECH 483
           K   SS DA    G  R+++ QG   W   P+     P  LQE + G+P  ++AA V   
Sbjct: 322 KYCHSSFDAITVDGQQRLYIFQGSHFWEVAPDGNVSEPLPLQERWAGLPPHIEAAAVSLD 381

Query: 484 RGECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGN 645
            G+       FF+G+  W F   K      +L  A G     + +     + R   F+G 
Sbjct: 382 SGDFH-----FFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAALFFPPLGRLVLFKGA 436

Query: 646 QFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHG 825
           ++         V+P YPR ++D+       G   +               +   L    G
Sbjct: 437 RYYVLARDGLQVEPYYPRGLQDW-------GGVPKE--------------VNGALPRPDG 475

Query: 826 ATYAFRGTHYWRLDTSR---DGWHSWPIDHQW 912
           +   FR   YWRLD ++     W  W  +  W
Sbjct: 476 SIIFFRDDRYWRLDQAKLQATAWGRWAAELPW 507


>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
            [Canis familiaris].
          Length = 661

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 21/217 (9%)
 Frame = +1

Query: 145  RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG--LISER----- 303
            R+ + P  DV  RCS    FDA      G   FFKG   W     TR   L+S +     
Sbjct: 385  RSSTLPRKDVPHRCSTD--FDA-VAQIRGEAFFFKGKYFW---RLTRDGHLVSLQPAQMH 438

Query: 304  --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
              W+  P    SVDA + R  D ++   +GD+ WV+     +E       +F   P  +D
Sbjct: 439  RFWRGLPLQLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 498

Query: 466  AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
            AA         ++   FF+    W +D  T+        +   W  +      AM W   
Sbjct: 499  AAFSW----SHNDKTYFFKDQLYWRFDEHTRRMDPGHPARSPPWRGIPSTLDDAMCWSDG 554

Query: 622  RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
              Y FRG ++ +       V P YP+     ++ C D
Sbjct: 555  AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRD 591


>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein
           [Canis familiaris].
          Length = 612

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
 Frame = +1

Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 437 IFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 492

Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
           W + + T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 493 WVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 552

Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
            +P+ + D + + PD                     L A++     G +Y F+G +Y +L
Sbjct: 553 GFPKLIADAWNAIPDN--------------------LDAVVDLQGSGHSYFFKGAYYLKL 592

Query: 865 D 867
           +
Sbjct: 593 E 593


>ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted)
            [Canis familiaris].
          Length = 741

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 20/224 (8%)
 Frame = +1

Query: 124  PKHG--AEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGL-- 291
            PK G  A+ R   +PD      C DG  FD   +   G M  FKG   W  ++  R L  
Sbjct: 411  PKPGPPAQPRATERPDQYGPNIC-DG-DFDTVAM-LRGEMFVFKGRWFWRVRH-NRVLDN 466

Query: 292  ----ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQEEFPGVP- 453
                I   W+  PS + AA+ R   R    +GD+ W++     E   P+ L     G+P 
Sbjct: 467  YPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPY 526

Query: 454  SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAMRW 615
              +D A+             FFQ    W ++ +T+           +W  +   S    +
Sbjct: 527  DRIDTAIWWE----PTGHTFFFQEDRYWRFNEETQRGDPGYPKPISVWQGIPT-SPKGAF 581

Query: 616  ISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDR 735
            +S      Y ++G ++ +FD     ++P YP+ +   FM C ++
Sbjct: 582  LSNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQEQ 625


>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
           isoform 2 [Canis familiaris].
          Length = 582

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEK-EKENPRSLQEEFPGVPS-PLD 465
           I + W+  P+S++ A+ R   +    +GDK WV+     E   P+ ++E   G+P+  +D
Sbjct: 356 IGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKID 415

Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAMRWISR- 624
           AA+        +    FF+G   + ++ + +          ++W  +          S  
Sbjct: 416 AALFW----MPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDE 471

Query: 625 --YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRG 738
              Y ++GN++ +F+     V+P YP+     +M CP  G
Sbjct: 472 VFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSSG 511


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,242,806
Number of extensions: 2033660
Number of successful extensions: 9493
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9410
Number of HSP's successfully gapped: 9
Length of query: 514
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 407
Effective length of database: 15,307,552
Effective search space: 6230173664
Effective search space used: 6230173664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000604.1| hemopexin precursor [Homo sapiens].                  733   0.0  
Alignment   gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].           65   2e-10
Alignment   gi|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo...    62   1e-09
Alignment   gi|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo...    59   1e-08
Alignment   gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].           56   1e-07
Alignment   gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo...    55   2e-07
Alignment   gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s...    52   1e-06
Alignment   gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot...    52   1e-06
Alignment   gi|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].           51   3e-06
Alignment   gi|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo...    51   3e-06

>ref|NP_000604.1| hemopexin precursor [Homo sapiens].
          Length = 462

 Score =  733 bits (1892), Expect = 0.0
 Identities = 340/462 (73%), Positives = 376/462 (81%), Gaps = 9/462 (1%)
 Frame = +1

Query: 31   MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
            MAR LG   A  L  LC SLAIA PL  T+   HG     E+KPDPDVTERCSDGW FDA
Sbjct: 1    MARVLGAPVALGLWSLCWSLAIATPLPPTSA--HGNVAEGETKPDPDVTERCSDGWSFDA 58

Query: 211  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
            +TLD++G MLFFKG  VW    W R LISERWKN PS VDAAFR+GH+ VFLI+GDKVWV
Sbjct: 59   TTLDDNGTMLFFKGEFVWKSHKWDRELISERWKNFPSPVDAAFRQGHNSVFLIKGDKVWV 118

Query: 391  YPPEK-EKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTK 567
            YPPEK EK  P+ LQ+EFPG+PSPLDAAVECHRGECQ EGVLFFQG   WFWD  T T K
Sbjct: 119  YPPEKKEKGYPKLLQDEFPGIPSPLDAAVECHRGECQAEGVLFFQGDREWFWDLATGTMK 178

Query: 568  ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAH 747
            ER WPAVGNCSSA+RW+ RYYCF+GNQFLRFDPV G V P+YPRDVRDYFM CP RGH H
Sbjct: 179  ERSWPAVGNCSSALRWLGRYYCFQGNQFLRFDPVRGEVPPRYPRDVRDYFMPCPGRGHGH 238

Query: 748  RNATHRGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
            RN T  G+         RCSP LVL+AL SDNHGATYAF GTHYWRLDTSRDGWHSWPI 
Sbjct: 239  RNGTGHGNSTHHGPEYMRCSPHLVLSALTSDNHGATYAFSGTHYWRLDTSRDGWHSWPIA 298

Query: 904  HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
            HQW  GPSAVDAAFSW++KLYL+QGTQVY+FLTK GYTLV  YPK+LEKE+G+PHGI LD
Sbjct: 299  HQWPQGPSAVDAAFSWEEKLYLVQGTQVYVFLTKGGYTLVSGYPKRLEKEVGTPHGIILD 358

Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
            +VDA F+CPG+SRLH+MAGR+LWWLDL  GAQ  WTELPWPHEKVD ALC EKSLGPNSC
Sbjct: 359  SVDAAFICPGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKSLGPNSC 418

Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
            SA+G GLY++HGP++YCY DVEKL +AKALPQPQ+V SLLGC
Sbjct: 419  SANGPGLYLIHGPNLYCYSDVEKLNAAKALPQPQNVTSLLGC 460


>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
          Length = 488

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 14/218 (6%)
 Frame = +1

Query: 121 GPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWA--GQNWTRG- 288
           GP+ G +    +  +PD      +   FDA ST+   G + FFK   VW   G     G 
Sbjct: 272 GPQAGIDTNEIAPLEPDAPPDACEA-SFDAVSTI--RGELFFFKAGFVWRLRGGQLQPGY 328

Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E   V  P+
Sbjct: 329 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-TELGLVRFPV 387

Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
            AA+       +   + FF+G   W +   T+     +      W  V     +A +   
Sbjct: 388 HAALVWGP---EKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDAD 444

Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
            Y Y  RG  + +FDPV       +PR V   F  C +
Sbjct: 445 GYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAE 482


>ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens].
          Length = 603

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
 Frame = +1

Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
           + R+ + P  DV  RCS    FDA      G   FFKG   W      R L+S +     
Sbjct: 317 DNRSSAPPRKDVPHRCSTH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMH 372

Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
             W+  P    SVDA + R  D ++   +GD+ WV+     +E       +F   P  +D
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGID 432

Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
           AA         ++   FF+    W +D  T+        +  LW  V      AMRW   
Sbjct: 433 AAFSW----AHNDRTYFFKDQLYWRYDDHTRHMDPGYPAQSPLWRGVPSTLDDAMRWSDG 488

Query: 622 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
             Y FRG ++ +       V P YP+     ++ C D
Sbjct: 489 ASYFFRGQEYWKVLDGELEVAPGYPQSTARDWLVCGD 525


>ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens].
          Length = 562

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 75/267 (28%), Positives = 97/267 (36%), Gaps = 11/267 (4%)
 Frame = +1

Query: 94  IAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ 273
           +A P    A P H     + S P PD   RC     FDA   +  G   FFKGP  W  Q
Sbjct: 295 LAPPPQPPASPTH-----SPSFPIPD---RCEGN--FDAIA-NIRGETFFFKGPWFWRLQ 343

Query: 274 NWTRGLISER-------WKNAPSSV---DAAFRRGHD-RVFLIQGDKVWVYPPEKEKENP 420
             +  L+S R       W+  P+ V    AA+ R  D R+ L  G + WV+   + +   
Sbjct: 344 P-SGQLVSPRPARLHRFWEGLPAQVRVVQAAYARHRDGRILLFSGPQFWVFQDRQLEGGA 402

Query: 421 RSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERLWPAVGNCS 600
           R L E   G+P           GE  D           + W    KT             
Sbjct: 403 RPLTEL--GLPP----------GEEVDA---------VFSWPQNGKT------------- 428

Query: 601 SAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRC 780
                    Y  RG Q+ R+D      DP YPRD+  +  + P                 
Sbjct: 429 ---------YLVRGRQYWRYDEAAARPDPGYPRDLSLWEGAPP----------------- 462

Query: 781 SPDLVLTALLSDNHGATYAFRGTHYWR 861
           SPD V  +    N G TY F+G HYWR
Sbjct: 463 SPDDVTVS----NAGDTYFFKGAHYWR 485


>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
          Length = 476

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
 Frame = +1

Query: 169 DVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSSVDA 333
           ++  +C     FDA STL   G  LFFK    W   +W       LIS  W + PS +DA
Sbjct: 284 EMPAKCDPALSFDAISTL--RGEYLFFKDRYFWRRSHWNPEPEFHLISAFWPSLPSYLDA 341

Query: 334 AFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDE 504
           A+     D VF+ +G++ W +   E +   PR +    FP     +DAAV     + + +
Sbjct: 342 AYEVNSRDTVFIFKGNEFWAIRGNEVQAGYPRGIHTLGFPPTIRKIDAAV----SDKEKK 397

Query: 505 GVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQFLRF 660
              FF     W +D  +++ ++         +P V     + ++    +Y F G+    F
Sbjct: 398 KTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGVEPKVDAVLQAFGFFYFFSGSSQFEF 457

Query: 661 DP 666
           DP
Sbjct: 458 DP 459


>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
          Length = 645

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           I + WK  P+ +DAA+ R   R    +GDK WV+     +          PG P  L   
Sbjct: 418 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 467

Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
             C   E  D  +         FF+G   W +  + + T         +W  +       
Sbjct: 468 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 526

Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
            +IS+     Y ++G  + +FD     V+P YPR++   +M C  +    R       D 
Sbjct: 527 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEVERRKERRLPQD- 585

Query: 778 CSPDLVLTALLSDNHGATYA 837
              D+ +   ++D  G+  A
Sbjct: 586 ---DVDIMVTINDVPGSVNA 602


>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
          Length = 610

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
 Frame = +1

Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 435 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 490

Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
           W + + T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 491 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 550

Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
            +P+ + D + + PD                     L A++     G +Y F+G +Y +L
Sbjct: 551 GFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 590

Query: 865 D 867
           +
Sbjct: 591 E 591


>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
          Length = 660

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
 Frame = +1

Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 485 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 540

Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
           W + + T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 541 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 600

Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
            +P+ + D + + PD                     L A++     G +Y F+G +Y +L
Sbjct: 601 GFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 640

Query: 865 D 867
           +
Sbjct: 641 E 641


>ref|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].
          Length = 477

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 16/185 (8%)
 Frame = +1

Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQ----NWTRGLISERWKNAPSS 324
           P+P     C     FDA STL   G +L FK    W            LIS  W + PS 
Sbjct: 282 PEPGTPANCDPALSFDAVSTL--RGEILIFKDRHFWRKSLRKLEPELHLISSFWPSLPSG 339

Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
           VDAA+     D VF+ +G++ W +   E     PR +    FP     +DAA+     + 
Sbjct: 340 VDAAYEVTSKDLVFIFKGNQFWAIRGNEVRAGYPRGIHTLGFPPTVRKIDAAI----SDK 395

Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
           +     FF     W +D K  + +          +P +     +       +Y F G+  
Sbjct: 396 EKNKTYFFVEDKYWRFDEKRNSMEPGFPKQIAEDFPGIDSKIDAVFEEFGFFYFFTGSSQ 455

Query: 652 LRFDP 666
           L FDP
Sbjct: 456 LEFDP 460


>ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens].
          Length = 669

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 27/230 (11%)
 Frame = +1

Query: 124  PKHGAEGRNESKPDPDVTERCS---DGWG-------FDASTLDEHGAMLFFKGPSVWAGQ 273
            P  G +     KP P V  R +   D +G       FD   +   G M  FKG   W  +
Sbjct: 338  PPPGGKPERPPKPGPPVQPRATERPDQYGPNICDGDFDTVAM-LRGEMFVFKGRWFWRVR 396

Query: 274  NWTRGL------ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQ 432
            +  R L      I   W+  P  + AA+ R   R    +GD+ W++     E   P+ L 
Sbjct: 397  H-NRVLDNYPMPIGHFWRGLPGDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLT 455

Query: 433  EEFPGVP-SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLW---P 582
                G+P   +D A+             FFQ    W ++ +T+           +W   P
Sbjct: 456  SYGLGIPYDRIDTAIWWE----PTGHTFFFQEDRYWRFNEETQRGDPGYPKPISVWQGIP 511

Query: 583  AVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
            A    +      +  Y ++G ++ +FD     ++P YP+ +   FM C +
Sbjct: 512  ASPKGAFLSNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQE 561


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,767,912
Number of extensions: 1980671
Number of successful extensions: 8926
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8854
Number of HSP's successfully gapped: 13
Length of query: 514
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,770,016
Effective search space: 6011396512
Effective search space used: 6011396512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_059067.2| hemopexin precursor [Mus musculus].                  645   0.0  
Alignment   gi|NP_032632.1| stromelysin-3 precursor [Mus musculus].               68   2e-11
Alignment   gi|NP_062344.1| stromelysin-2 precursor [Mus musculus].               59   1e-08
Alignment   gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].           55   2e-07
Alignment   gi|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musc...    55   2e-07
Alignment   gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].           53   6e-07
Alignment   gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu...    52   1e-06
Alignment   gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m...    52   1e-06
Alignment   gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc...    52   1e-06

>ref|NP_059067.2| hemopexin precursor [Mus musculus].
          Length = 460

 Score =  645 bits (1665), Expect = 0.0
 Identities = 305/462 (66%), Positives = 352/462 (76%), Gaps = 9/462 (1%)
 Frame = +1

Query: 31   MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
            MAR    +    LLGLC SLA+A PL    G    AE  N +KPD DV E C D W FDA
Sbjct: 1    MARTAVALNILVLLGLCWSLAVASPLPTANG--RVAEVENGTKPDSDVPEHCLDTWSFDA 58

Query: 211  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
            +T+D +G MLFFKG  VW G + TR LIS RWKN  +SVDAAFR G D VFLI+ DKVWV
Sbjct: 59   ATMDHNGTMLFFKGEFVWRGHSGTRELISARWKNPITSVDAAFR-GPDSVFLIKEDKVWV 117

Query: 391  YPPEKEKEN--PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTT 564
            YPPEK KEN  P+  QEEFPG+P P DAAVECHRGECQ EGVLFFQG   WFWD  T+T 
Sbjct: 118  YPPEK-KENGYPKLFQEEFPGIPYPPDAAVECHRGECQSEGVLFFQGNRKWFWDFATRTQ 176

Query: 565  KERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGH- 741
            KER W  VGNC++A+RW+ RYYCF+GN+FLRF+PVTG V P+YP D RDYF+SCP RGH 
Sbjct: 177  KERSWSTVGNCTAALRWLERYYCFQGNKFLRFNPVTGEVPPRYPLDARDYFVSCPGRGHG 236

Query: 742  ------AHRNATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
                  AH N+TH    RCSPD  LTALLSD+ GATYAF G+HYWRLD+SRDGWHSWPI 
Sbjct: 237  RPRNGTAHGNSTHPMHSRCSPDPGLTALLSDHRGATYAFTGSHYWRLDSSRDGWHSWPIA 296

Query: 904  HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
            H W  GPS VDAAFSWDDK+YLIQGTQVY+FLTK G  LV  YPK+LEKELGSP GISL+
Sbjct: 297  HHWPQGPSTVDAAFSWDDKVYLIQGTQVYVFLTKGGNNLVSGYPKRLEKELGSPPGISLE 356

Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
             +DA F CPG+SRL+V +GR+LWWLDL  GAQ  WTE+ WPHEKVD ALC +KSLGPN+C
Sbjct: 357  TIDAAFSCPGSSRLYVSSGRRLWWLDLKSGAQATWTEVSWPHEKVDGALCLDKSLGPNTC 416

Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
            S++G  LY +HGP++YCY  ++KL +AK+LPQPQ VNS+LGC
Sbjct: 417  SSNGSSLYFIHGPNLYCYSSIDKLNAAKSLPQPQKVNSILGC 458


>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
          Length = 492

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 67/231 (29%), Positives = 94/231 (40%), Gaps = 13/231 (5%)
 Frame = +1

Query: 97  AHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVW---A 267
           A  LS  AG         E +  PDV E   D      ST+   G + FFK   VW   +
Sbjct: 272 APTLSSQAGTDTNEIALLEPETPPDVCETSFDA----VSTI--RGELFFFKAGFVWRLRS 325

Query: 268 G--QNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEF 441
           G  Q     L S  W+  PS VDAAF     +++  QG + WVY  EK    P  L  + 
Sbjct: 326 GRLQPGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDGEKPVLGPAPL-SKL 384

Query: 442 PGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCS 600
               SP+ AA+       +   + FF+G   W +  +T+     +      W  V     
Sbjct: 385 GLQGSPVHAALVWGP---EKNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTDWRGVPSEID 441

Query: 601 SAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
           +A +    Y Y  RG+ + +FDPV   V   +PR V   F  C +  +  R
Sbjct: 442 AAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDCAEPANTFR 492


>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
          Length = 476

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
 Frame = +1

Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
           P P+  ++C     FD+ STL   G +LFFK    W   +W       LIS  W   PS 
Sbjct: 281 PRPETPDKCDPALSFDSVSTL--RGEVLFFKDRYFWRRSHWNPEPEFHLISAFWPTLPSD 338

Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
           +DAA+     D V + +G + W V   E +   P+ +    FP     +DAAV     E 
Sbjct: 339 LDAAYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAV----FEK 394

Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERLWP---------AVGNCSSAMRWISRYYCFRGNQ 648
           + +   FF G   W +D +T+   ++ +P               + +     +Y FRG+ 
Sbjct: 395 EKKKTYFFVGDKYWRFD-ETRHVMDKGFPRQITDDFPGIEPQVDAVLHEFGFFYFFRGSS 453

Query: 649 FLRFDP 666
              FDP
Sbjct: 454 QFEFDP 459


>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
          Length = 618

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
 Frame = +1

Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           I + WK  P+ +DAA+ R   R    +GDK WV+     +          PG P  L   
Sbjct: 391 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 440

Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
             C   E  D  +         FF+G   W +  + + T         +W  +       
Sbjct: 441 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 499

Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDR 735
            +IS+     Y ++G  + +FD     V+P YPR++   +M C  +
Sbjct: 500 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCKQK 545


>ref|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musculus].
          Length = 578

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 19/213 (8%)
 Frame = +1

Query: 145 RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER------- 303
           R+ + P  DV  RC+    FDA      G   FFKG   W      R L+S +       
Sbjct: 323 RSSTPPQKDVPHRCTAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMHRF 378

Query: 304 WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
           W+  P    SVDA + R  D ++   +GD+ WV+     +E       +F   P  +DA 
Sbjct: 379 WRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGIDAV 438

Query: 472 VECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAVGN-CSSAMRWI-SRY 627
                    ++   FF+    W +D  T+        +  LW  V +    AMRW     
Sbjct: 439 FSW----AHNDRTYFFKDQLYWRYDDHTRRMDPGYPAQGPLWRGVPSMLDDAMRWSDGAS 494

Query: 628 YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 726
           Y FRG ++ +         P YP+     ++ C
Sbjct: 495 YFFRGQEYWKVLDGELEAAPGYPQSTARDWLVC 527


>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
          Length = 479

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
 Frame = +1

Query: 115 TAGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG- 288
           TA P         +  +P+ +  CS    FDA STL   G +LFFK    W     T   
Sbjct: 269 TASPDVLVVPTKSNSLEPETSPMCSSTLFFDAVSTL--RGEVLFFKDRHFWRKSLRTPEP 326

Query: 289 ---LISERWKNAPSSVDAAFR-RGHDRVFLIQGDKVWVYPPEKEKEN-PRSLQE-EFPGV 450
              LIS  W + PS++DAA+     D VF+ +G++ W     +E    P+S+     P  
Sbjct: 327 EFYLISSFWPSLPSNMDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPAT 386

Query: 451 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSA 606
              +DAA+       +     FF     W +D K ++ +          +P V     + 
Sbjct: 387 VKKIDAAI----SNKEKRKTYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPGVDSRVDAV 442

Query: 607 MRWISRYYCFRGNQFLRFDP 666
                  Y F G+  L FDP
Sbjct: 443 FEAFGFLYFFSGSSQLEFDP 462


>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
          Length = 662

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
 Frame = +1

Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 487 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 542

Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
           W + + T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 543 WVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 602

Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
            +P+ + D + + PD                     L A++     G +Y F+G +Y +L
Sbjct: 603 GFPKLIADSWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 642

Query: 865 D 867
           +
Sbjct: 643 E 643


>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
          Length = 455

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
 Frame = +1

Query: 154 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKNAPSS 324
           +KP P +   CS     DA  L   G    FKG  VW   +   G    IS  W+  P +
Sbjct: 208 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 264

Query: 325 VDAA-FRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQD 501
           +DAA +     R    +G+KVW Y   K          +F  V   LDAA+        +
Sbjct: 265 LDAAVYSPRTRRTHFFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP----VN 317

Query: 502 EGVLFFQGTHTWFWDSKTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRGNQFL 654
           + V  F+G+  W WD   +T         KE         S+AM W   + Y F+G ++ 
Sbjct: 318 QKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKGKEYW 377

Query: 655 RFDPVTGHVDPKYPRDVRDYFMSC 726
           R +     V   YPR+   ++M C
Sbjct: 378 RLNQQL-RVAKGYPRNT-THWMHC 399


>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
          Length = 527

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
 Frame = +1

Query: 154 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKNAPSS 324
           +KP P +   CS     DA  L   G    FKG  VW   +   G    IS  W+  P +
Sbjct: 280 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 336

Query: 325 VDAA-FRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQD 501
           +DAA +     R    +G+KVW Y   K          +F  V   LDAA+        +
Sbjct: 337 LDAAVYSPRTRRTHFFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP----VN 389

Query: 502 EGVLFFQGTHTWFWDSKTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRGNQFL 654
           + V  F+G+  W WD   +T         KE         S+AM W   + Y F+G ++ 
Sbjct: 390 QKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKGKEYW 449

Query: 655 RFDPVTGHVDPKYPRDVRDYFMSC 726
           R +     V   YPR+   ++M C
Sbjct: 450 RLNQQL-RVAKGYPRNT-THWMHC 471


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,187,514
Number of extensions: 1634316
Number of successful extensions: 7147
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7083
Number of HSP's successfully gapped: 9
Length of query: 514
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 408
Effective length of database: 12,433,743
Effective search space: 5072967144
Effective search space used: 5072967144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999118.1| hemopexin precursor [Sus scrofa].                    986   0.0  
Alignment   gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].             62   9e-10
Alignment   gi|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metal...    60   3e-09
Alignment   gi|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like ...    60   4e-09
Alignment   gi|NP_001159780.1| stromelysin-1 [Sus scrofa].                        52   7e-07
Alignment   gi|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus ...    50   3e-06
Alignment   gi|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].              50   4e-06
Alignment   gi|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus ...    49   8e-06

>ref|NP_999118.1| hemopexin precursor [Sus scrofa].
          Length = 459

 Score =  986 bits (2549), Expect = 0.0
 Identities = 456/459 (99%), Positives = 456/459 (99%)
 Frame = +1

Query: 31   MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
            MARALGTV APWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA
Sbjct: 1    MARALGTVEAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 60

Query: 211  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
            STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV
Sbjct: 61   STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 120

Query: 391  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
            YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDS TKTTKE
Sbjct: 121  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 180

Query: 571  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
            RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCP RGHAHR
Sbjct: 181  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 240

Query: 751  NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 930
            NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA
Sbjct: 241  NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 300

Query: 931  VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1110
            VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP
Sbjct: 301  VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 360

Query: 1111 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1290
            GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI
Sbjct: 361  GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 420

Query: 1291 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS 1407
            VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS
Sbjct: 421  VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS 459


>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
          Length = 491

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 56/188 (29%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
 Frame = +1

Query: 229 GAMLFFKGPSVWAG-----QNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY 393
           G + FFK   VW       Q     L S  W+  PS VDAAF      ++  QG + WVY
Sbjct: 309 GELFFFKAGFVWRLRRGHLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVY 368

Query: 394 PPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
             EK    P  L E   PG  SP+ AA+       +   V FF+G   W +   T     
Sbjct: 369 DGEKPALGPAPLSELGLPG--SPVHAALVWGP---EKNKVYFFRGGDYWRFHPSTHRVDS 423

Query: 571 RL------WPAV-GNCSSAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 726
            +      W  V     +A +    Y Y  RG  + +FDPV       +PR V   F  C
Sbjct: 424 PVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGLDFFGC 483

Query: 727 PDRGHAHR 750
            +  +  R
Sbjct: 484 SEPANTFR 491


>ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus
           scrofa].
          Length = 592

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
 Frame = +1

Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
           + R+ S P  DV  RCS    FDA      G  LFFKG   W   N  R L+S +     
Sbjct: 317 DNRSSSPPRKDVPHRCSTH--FDA-VAQIXGESLFFKGKYFWR-LNRDRHLVSLQPVQMH 372

Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
             W+       SVDA + R  D ++   +GD+ WV+     +E       +F   P  +D
Sbjct: 373 RFWRGLLLHLDSVDAVYERTSDHKIIFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 432

Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
           AA         ++   FF+    W +D  T+        +   W  V      AMRW   
Sbjct: 433 AAFSW----AHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSDG 488

Query: 622 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
             Y FRG ++ +       V P YP+     ++ C D
Sbjct: 489 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRD 525


>ref|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like [Sus scrofa].
          Length = 780

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 64/245 (26%), Positives = 85/245 (34%), Gaps = 11/245 (4%)
 Frame = +1

Query: 160 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER-------WKNAP 318
           P   V +RC     FDA   +  G   FFKGP  W  Q  +  L+S R       W+  P
Sbjct: 313 PSQPVPDRCEGN--FDAIA-NIRGETFFFKGPWFWRLQP-SGQLVSPRPARLHRFWEGLP 368

Query: 319 SSVD---AAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
           + V    AA+ R  D R+ L  G + WV+   + +  PR L E        +DA      
Sbjct: 369 AQVQVIQAAYARHPDGRILLFSGPQFWVFQDRRLEGAPRPLTELGLPPQEQVDAVFS--- 425

Query: 487 GECQDEGVLFFQGTHTWFWDSKTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDP 666
                                         WP  G          + Y  RG ++ R+D 
Sbjct: 426 ------------------------------WPLNG----------KTYLVRGQRYWRYDE 445

Query: 667 VTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGATYAFRG 846
                DP YPRD+  +             A H  DD          +   N G TY F+G
Sbjct: 446 AAASPDPGYPRDLSLW-----------EGAPHAPDD----------VTVSNTGDTYFFKG 484

Query: 847 THYWR 861
            HYWR
Sbjct: 485 AHYWR 489


>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
          Length = 477

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
 Frame = +1

Query: 118 AGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTR--- 285
           A P    E    +   P     C     FDA STL   G +LFFK    W  +++ R   
Sbjct: 268 ASPPEPVEPTESTPQKPGTPATCDPALSFDAISTL--RGEILFFKDRHFWR-KSFRRLEP 324

Query: 286 --GLISERWKNAPSSVDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGV 450
              LIS  W   PSS+DAA      D VF+ +G + W +   + +   PRS+    FP  
Sbjct: 325 EFHLISSFWPPLPSSIDAACEVISKDTVFIFKGTQFWAIRGNDVQPGYPRSIHTLGFPST 384

Query: 451 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSA 606
              +DAA+     + + +   FF     W +D K ++ +          +P V     + 
Sbjct: 385 VKKIDAAI----SDKETKKTYFFVEDKYWRFDEKRQSMEPGFPKQIVEDFPGVEPKVDAV 440

Query: 607 MRWISRYYCFRGNQFLRFDP 666
                 +Y F G+    FDP
Sbjct: 441 FEAFGFFYFFNGSSQFEFDP 460


>ref|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus scrofa].
          Length = 819

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 19/222 (8%)
 Frame = +1

Query: 124  PKHG--AEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGL-- 291
            PK G  A+ R   +PD      C DG  FD   +   G M  FKG   W  ++  R L  
Sbjct: 492  PKPGPPAQPRATERPDQYGPNIC-DG-DFDTVAM-LRGEMFVFKGRWFWRVRH-NRVLDN 547

Query: 292  ----ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQEEFPGVP- 453
                I   W+  PS + AA+ R   R    +GD+ W++     E   P+ L     G+P 
Sbjct: 548  YPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPY 607

Query: 454  SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLW---PAVGNCSSA 606
              +D A+             FFQ    W ++  T+           +W   PA    +  
Sbjct: 608  DRIDTAIWWE----PTGHTFFFQEDRYWRFNEDTQRGDPGYPKPISVWQGIPASPKGAFL 663

Query: 607  MRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
                +  Y ++G ++ +FD     ++P YP+ +   FM C +
Sbjct: 664  SNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQE 705


>ref|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].
          Length = 661

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
 Frame = +1

Query: 358 VFLIQGDKVW--VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTH 531
           +F  +   +W  V P +K    P      +P +P  +DA  E      Q+E  +FF G  
Sbjct: 486 IFFFKDRFIWRTVTPRDKPMVAPAGATF-WPELPEKIDAVYEAP----QEEKAVFFAGNE 540

Query: 532 TWFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVD 684
            W + + T         T   L P V    +A  W    + Y F G++F R++ V   +D
Sbjct: 541 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 600

Query: 685 PKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWR 861
           P +P+ + D + + PD                     L A++     G +Y F+G +Y +
Sbjct: 601 PGFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLK 640

Query: 862 LD 867
           L+
Sbjct: 641 LE 642


>ref|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus scrofa].
          Length = 539

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
 Frame = +1

Query: 445 GVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTT--KERLWPAVGNCSSAMRWI 618
           G+P  LDAAV   R     + + FF+G   W + +   +    +RL     N  +A+ W 
Sbjct: 331 GLPGNLDAAVYSPR----TQWIHFFKGDKVWRYVNFKMSPGFPKRLNRVEPNLDAALYWP 386

Query: 619 --SRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDL 792
              + + F+G+ + ++D +       YP+ ++  F   PD+                   
Sbjct: 387 LNQKVFLFKGSGYWQWDELAQMDFSSYPKPIKRLFTGVPDQP------------------ 428

Query: 793 VLTALLSDNHGATYAFRGTHYWRLDTS--------RDGWHSWPIDHQWSHGPSAVD 936
             +A +S   G  Y F+G  YWRL+          RD  H+W   H  +  P+ +D
Sbjct: 429 --SAAMSWRDGRVYFFKGKQYWRLNRQLRVEKGYPRDIAHNWMHCHPQNSDPTPLD 482


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,335,197
Number of extensions: 1277927
Number of successful extensions: 5923
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5874
Number of HSP's successfully gapped: 8
Length of query: 514
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,779,541
Effective search space: 3608391351
Effective search space used: 3608391351
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007074
         (1543 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         749   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  749 bits (378), Expect = 0.0
 Identities = 387/390 (99%)
 Strand = Plus / Plus

                                                                           
Query: 1136    caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggaccgagc 1195
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3954864 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggacagagc 3954923

                                                                           
Query: 1196    ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 1255
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954924 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 3954983

                                                                           
Query: 1256    actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccatgtctactgct 1315
               ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3954984 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccacgtctactgct 3955043

                                                                           
Query: 1316    acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 1375
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955044 acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 3955103

                                                                           
Query: 1376    gcctgctgggctgccatcggtctcggggctcctgatgcgagcctggcccagctcctcctc 1435
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955104 gcctgctgggctgccatcggtctcggggctcctgatgcgagcctggcccagctcctcctc 3955163

                                                                           
Query: 1436    ctggctttccttgcaatgaagccagagggcttcctggcttgatcaaagctgtaaatcaac 1495
               | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955164 caggctttccttgcaatgaagccagagggcttcctggcttgatcaaagctgtaaatcaac 3955223

                                             
Query: 1496    catatggtctaataaaaaatgaacgataac 1525
               ||||||||||||||||||||||||||||||
Sbjct: 3955224 catatggtctaataaaaaatgaacgataac 3955253



 Score =  412 bits (208), Expect = e-112
 Identities = 214/216 (99%)
 Strand = Plus / Plus

                                                                           
Query: 522     aggcacccacacctggttctgggactccaagacaaaaaccacaaaggagcgcctctggcc 581
               ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3949767 aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 3949826

                                                                           
Query: 582     ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 641
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949827 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 3949886

                                                                           
Query: 642     taaccagttcctgcgctttgaccctgtcacgggacatgtggatcccaaataccctcggga 701
               |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3949887 taaccagttcctgcgctttgaccccgtcacgggacatgtggatcccaaataccctcggga 3949946

                                                   
Query: 702     tgtccgcgactacttcatgtcctgcccggacagagg 737
               ||||||||||||||||||||||||||||||||||||
Sbjct: 3949947 tgtccgcgactacttcatgtcctgcccggacagagg 3949982



 Score =  333 bits (168), Expect = 2e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                           
Query: 972     ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 1031
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954581 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 3954640

                                                                           
Query: 1032    cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 1091
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954641 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 3954700

                                                               
Query: 1092    tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 1139
               ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954701 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 3954748



 Score =  307 bits (155), Expect = 1e-80
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                           
Query: 370     cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 429
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949038 cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 3949097

                                                                           
Query: 430     caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 489
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949098 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 3949157

                                                  
Query: 490     gaatgccaagatgagggcgtcctcttcttccaagg 524
               |||||||||||||||||||||||||||||||||||
Sbjct: 3949158 gaatgccaagatgagggcgtcctcttcttccaagg 3949192



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                           
Query: 844     gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 903
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954377 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 3954436

                                                                           
Query: 904     catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 963
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954437 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 3954496

                            
Query: 964     tatctgatccagg 976
               |||||||||||||
Sbjct: 3954497 tatctgatccagg 3954509



 Score =  248 bits (125), Expect = 8e-63
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                           
Query: 249     agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 308
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947405 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 3947464

                                                                           
Query: 309     aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 368
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947465 aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 3947524

                    
Query: 369     ccagg 373
               |||||
Sbjct: 3947525 ccagg 3947529



 Score =  212 bits (107), Expect = 4e-52
 Identities = 110/111 (99%)
 Strand = Plus / Plus

                                                                           
Query: 735     aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 794
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950226 aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 3950285

                                                                  
Query: 795     cttgactgcactgctgtctgacaaccacggtgccacctatgccttccgtgg 845
               ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3950286 cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 3950336



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                           
Query: 23      agctcatcatggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgct 82
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946506 agctcatcatggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgct 3946565

                                               
Query: 83      gctctctggccatcgcccaccctctttctctg 114
               ||||||||||||||||||||||||||||||||
Sbjct: 3946566 gctctctggccatcgcccaccctctttctctg 3946597



 Score =  139 bits (70), Expect = 5e-30
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                           
Query: 178     gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 237
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946897 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 3946956

                             
Query: 238     ctgttttttaaagg 251
               |||||||| |||||
Sbjct: 3946957 ctgtttttcaaagg 3946970



 Score =  121 bits (61), Expect = 1e-24
 Identities = 64/65 (98%)
 Strand = Plus / Plus

                                                                           
Query: 114     gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccagacccagacgt 173
               |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3946747 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 3946806

                    
Query: 174     gaccg 178
               |||||
Sbjct: 3946807 gaccg 3946811


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,088,903
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 10
Length of query: 1543
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1522
Effective length of database: 2,808,413,156
Effective search space: 4274404823432
Effective search space used: 4274404823432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)