Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029784.1| hemopexin precursor [Bos taurus]. 718 0.0
Alignment gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [... 62 1e-09
Alignment gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos... 62 1e-09
Alignment gi|NP_001193566.1| stromelysin-1 [Bos taurus]. 59 1e-08
Alignment gi|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus]. 55 1e-07
Alignment gi|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos tau... 55 1e-07
Alignment gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr... 55 2e-07
Alignment gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane... 55 2e-07
Alignment gi|XP_002695695.1| PREDICTED: matrix metallopeptidase 28 (epily... 54 4e-07
Alignment gi|XP_001788282.2| PREDICTED: matrix metallopeptidase 28 (epily... 54 4e-07
>ref|NP_001029784.1| hemopexin precursor [Bos taurus].
Length = 459
Score = 718 bits (1853), Expect = 0.0
Identities = 332/453 (73%), Positives = 370/453 (81%)
Frame = +1
Query: 31 MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
MARAL A WLLGLC SLA AHPL+ HG EG N +KPDP+VTERCSDGWGFDA
Sbjct: 1 MARALRVPVALWLLGLCWSLAKAHPLARAPELGHGVEGGNVAKPDPEVTERCSDGWGFDA 60
Query: 211 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
+TLDEHG MLF KG VW G W R LISERWK+APS VDAAFR + V LI+GDK WV
Sbjct: 61 TTLDEHGNMLFLKGEFVWKGHAWARQLISERWKDAPSPVDAAFRYDRNSVLLIKGDKFWV 120
Query: 391 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
YPPEK +E P+ LQE+FPG+P PLDAAVECHRGEC EGV FFQG HTWFWD TKT K+
Sbjct: 121 YPPEKGEEYPKLLQEKFPGIPFPLDAAVECHRGECSHEGVFFFQGNHTWFWDFSTKTIKK 180
Query: 571 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
R WPAVGNCSSA+RW++RYYCFRGN+FLRFDPVTG V+ YPRDVRDYFMSCP+RGHAHR
Sbjct: 181 RSWPAVGNCSSAIRWLNRYYCFRGNKFLRFDPVTGEVNSTYPRDVRDYFMSCPNRGHAHR 240
Query: 751 NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 930
NAT D RCSP LVL+ALLSDNH ATYAF HYWRLD+SRDGWHSW I+H W GPS
Sbjct: 241 NATQHMDKRCSPHLVLSALLSDNHSATYAFSENHYWRLDSSRDGWHSWRIEHLWPQGPST 300
Query: 931 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1110
VDAAF WD KLYLIQGTQVYIFLT+AGYTLV +YPKQLEKE GSP G+ L +VDA F CP
Sbjct: 301 VDAAFLWDKKLYLIQGTQVYIFLTRAGYTLVKDYPKQLEKEFGSPDGVCLHSVDAAFTCP 360
Query: 1111 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1290
G+S+L++MAG+KLW LDL+LGAQ WTELPW H KVD ALCTEKSLGP+SCSA+GLGLY+
Sbjct: 361 GSSQLYIMAGQKLWRLDLNLGAQATWTELPWLHTKVDGALCTEKSLGPHSCSANGLGLYL 420
Query: 1291 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
V GP++YCYKDVE+L K LPQ Q +NSLLGC
Sbjct: 421 VQGPNLYCYKDVEELSKTKDLPQAQRMNSLLGC 453
>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 62.0 bits (149), Expect = 1e-09
Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Frame = +1
Query: 121 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 288
GP GA+ + +PD + C FDA+ G + FFK VW G G
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306
Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
L S W+ PS VDAAF ++ QG + WVY EK P L E SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365
Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
AA+ + + FF+ W + + + W V +A +
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422
Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
+ Y RG + +FDPV +PR V F SC + + R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466
>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 62.0 bits (149), Expect = 1e-09
Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Frame = +1
Query: 121 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 288
GP GA+ + +PD + C FDA+ G + FFK VW G G
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306
Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
L S W+ PS VDAAF ++ QG + WVY EK P L E SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365
Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
AA+ + + FF+ W + + + W V +A +
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422
Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
+ Y RG + +FDPV +PR V F SC + + R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466
>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
Length = 477
Score = 58.9 bits (141), Expect = 1e-08
Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Frame = +1
Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
P+P C FDA STL G +LFFKG W T LIS W + PS
Sbjct: 282 PEPGTPAACDPALSFDAVSTL--RGEILFFKGRHFWRKSFRTFEPEFHLISSFWPSLPSG 339
Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
+DAA+ D VF+ +G++ W + E + PR + FP +DAA +
Sbjct: 340 IDAAYEVTSKDTVFIFKGNQFWAIRGNEMQAGYPRGIHTLGFPSTVRKIDAAF----SDK 395
Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
+ + FF W +D K ++ + +P V + YY F G+
Sbjct: 396 EKKKTYFFAEDKYWRFDEKRQSMEPGFPKQIVEDFPGVESEVDAVFEVFGFYYFFSGSSQ 455
Query: 652 LRFDP 666
FDP
Sbjct: 456 FEFDP 460
>ref|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus].
Length = 591
Score = 55.5 bits (132), Expect = 1e-07
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Frame = +1
Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
+ R+ + P D+ RCS FDA G FFKG W R L+S +
Sbjct: 317 DNRSSTLPRKDMPHRCSAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQVH 372
Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPL 462
W+ P SVDA + R D ++ +GD+ WV+ +E PR + + G+PS
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDF--GLPS-- 428
Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKT------TKERLWPAV-GNCSSAMRWIS 621
V+ ++ FF+ W +D T+ + W V AMRW
Sbjct: 429 -GGVDAAFSWAHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSD 487
Query: 622 -RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y FRG ++ + V P YP+ ++ C D
Sbjct: 488 GAAYFFRGKEYWKVLDGELEVAPGYPQSTARDWLVCRD 525
>ref|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos taurus].
Length = 591
Score = 55.5 bits (132), Expect = 1e-07
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Frame = +1
Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
+ R+ + P D+ RCS FDA G FFKG W R L+S +
Sbjct: 317 DNRSSTLPRKDMPHRCSAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQVH 372
Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPL 462
W+ P SVDA + R D ++ +GD+ WV+ +E PR + + G+PS
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDF--GLPS-- 428
Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKT------TKERLWPAV-GNCSSAMRWIS 621
V+ ++ FF+ W +D T+ + W V AMRW
Sbjct: 429 -GGVDAAFSWAHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSD 487
Query: 622 -RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y FRG ++ + V P YP+ ++ C D
Sbjct: 488 GAAYFFRGKEYWKVLDGELEVAPGYPQSTARDWLVCRD 525
>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 596
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
I + WK P+ +DAA+ R R +GDK WV+ + PG P L
Sbjct: 369 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 418
Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
C E D + FF+G W + + + T +W +
Sbjct: 419 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 477
Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
+IS+ Y ++G + +FD V+P YPR++ +M C + R D
Sbjct: 478 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEAERRKERRLPQD- 536
Query: 778 CSPDLVLTALLSDNHGATYA 837
D+ + ++D G+ A
Sbjct: 537 ---DVDIMVTINDVPGSVNA 553
>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 568
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
I + WK P+ +DAA+ R R +GDK WV+ + PG P L
Sbjct: 341 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 390
Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
C E D + FF+G W + + + T +W +
Sbjct: 391 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 449
Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
+IS+ Y ++G + +FD V+P YPR++ +M C + R D
Sbjct: 450 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEAERRKERRLPQD- 508
Query: 778 CSPDLVLTALLSDNHGATYA 837
D+ + ++D G+ A
Sbjct: 509 ---DVDIMVTINDVPGSVNA 525
>ref|XP_002695695.1| PREDICTED: matrix metallopeptidase 28 (epilysin)-like [Bos taurus].
Length = 435
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
Frame = +1
Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
K SS DA G R+++ QG++ W + PR L+E + G+P ++AA
Sbjct: 237 KYCHSSFDAVTVDGQQRLYVFQGNQFWEVTADGNVSEPRPLRERWAGLPPHIEAAAV--- 293
Query: 487 GECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGNQ 648
+D FF+G+ W F K +L A G + + + R F+G +
Sbjct: 294 -SLEDGDFYFFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAAFFFPPLRRLVLFKGTR 352
Query: 649 FLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGA 828
+ V+P YPR +RD+ P+ ++ L G+
Sbjct: 353 YYVLAREGLQVEPYYPRGLRDWG-GVPEE--------------------VSGALPRPDGS 391
Query: 829 TYAFRGTHYWRLDTSR 876
FR YWRLD ++
Sbjct: 392 IIFFRDDRYWRLDQAK 407
>ref|XP_001788282.2| PREDICTED: matrix metallopeptidase 28 (epilysin)-like [Bos taurus].
Length = 435
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
Frame = +1
Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
K SS DA G R+++ QG++ W + PR L+E + G+P ++AA
Sbjct: 237 KYCHSSFDAVTVDGQQRLYVFQGNQFWEVTADGNVSEPRPLRERWAGLPPHIEAAAV--- 293
Query: 487 GECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGNQ 648
+D FF+G+ W F K +L A G + + + R F+G +
Sbjct: 294 -SLEDGDFYFFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAAFFFPPLRRLVLFKGTR 352
Query: 649 FLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGA 828
+ V+P YPR +RD+ P+ ++ L G+
Sbjct: 353 YYVLAREGLQVEPYYPRGLRDWG-GVPEE--------------------VSGALPRPDGS 391
Query: 829 TYAFRGTHYWRLDTSR 876
FR YWRLD ++
Sbjct: 392 IIFFRDDRYWRLDQAK 407
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,454,868
Number of extensions: 1976952
Number of successful extensions: 9628
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9545
Number of HSP's successfully gapped: 18
Length of query: 514
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,140,958
Effective search space: 5755369906
Effective search space used: 5755369906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiar... 720 0.0
Alignment gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris]. 65 1e-10
Alignment gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia... 58 3e-08
Alignment gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-... 55 2e-07
Alignment gi|XP_548256.2| PREDICTED: similar to matrix metalloproteinase ... 54 5e-07
Alignment gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ... 53 9e-07
Alignment gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ... 52 1e-06
Alignment gi|XP_544383.2| PREDICTED: similar to matrix metalloproteinase ... 50 5e-06
Alignment gi|XP_856947.1| PREDICTED: similar to matrix metalloproteinase ... 50 8e-06
>ref|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiaris].
Length = 458
Score = 720 bits (1859), Expect = 0.0
Identities = 335/463 (72%), Positives = 375/463 (80%), Gaps = 9/463 (1%)
Frame = +1
Query: 31 MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
MA ALG LLGLC SLA+AHPLS +G EG + ++ PDVTE C DGW FDA
Sbjct: 1 MAWALG------LLGLCWSLAVAHPLSPDGTHGNGTEGGSGARVKPDVTELCLDGWSFDA 54
Query: 211 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
+TLDEHGAMLFFKG VW W R LISERW+N S VDAAFRRGH+ VFL++GDKVWV
Sbjct: 55 TTLDEHGAMLFFKGEFVWKSHRWVRELISERWRNLTSPVDAAFRRGHNSVFLLKGDKVWV 114
Query: 391 YPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTK 567
YPPEK+++ P+ LQEEFPG+PSP+DAAVECHRGECQDEGVLFF+G TWFWD T T K
Sbjct: 115 YPPEKKEQGYPKLLQEEFPGIPSPVDAAVECHRGECQDEGVLFFKGNQTWFWDLTTGTKK 174
Query: 568 ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAH 747
ER WPAVG+CSSA+RW+SRYYCFRGNQFLRF+PVTG V PKYP DVRDYF+ CP RGH H
Sbjct: 175 ERSWPAVGHCSSALRWLSRYYCFRGNQFLRFNPVTGEVLPKYPLDVRDYFIPCPGRGHGH 234
Query: 748 RNATHRGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
RN T G+D RCS LVL+ALL+DNHGATYAF G+HYWRLDTSRDGWHSWPI
Sbjct: 235 RNGTGHGNDTHHGREDMRCSAFLVLSALLTDNHGATYAFSGSHYWRLDTSRDGWHSWPIV 294
Query: 904 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
HQW GPS VDAAFSWD+K+YLIQGTQVYIFLTK GYTLVD YPK+LEKE GSPHGI+L+
Sbjct: 295 HQWPQGPSTVDAAFSWDNKVYLIQGTQVYIFLTKGGYTLVDGYPKRLEKEFGSPHGINLE 354
Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
VDA F CPGTSRLH+ AGR LWWLDL LGAQ WTE+PWPHEKVD ALC EKSLGPNSC
Sbjct: 355 TVDAAFTCPGTSRLHIAAGRHLWWLDLKLGAQATWTEVPWPHEKVDGALCIEKSLGPNSC 414
Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCH 1392
SA+G GLY++HG +YCY DVEKL +AK+LPQPQ V SLLGC+
Sbjct: 415 SANGPGLYLIHGSDLYCYSDVEKLSTAKSLPQPQRVKSLLGCN 457
>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
Length = 489
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/227 (28%), Positives = 88/227 (38%), Gaps = 17/227 (7%)
Frame = +1
Query: 121 GPKHGAEGRN----ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWT 282
GP+ G + E + PD E D ST+ G + FFK VW G
Sbjct: 273 GPQAGVDTNEIAPLEPEAPPDACEITFDA----VSTI--RGELFFFKAGFVWRLRGGRLQ 326
Query: 283 RG---LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVP 453
G L S W+ PS VDAAF ++ QG + WVY EK P L E +
Sbjct: 327 PGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYNGEKPVLGPAPL-SELGLLG 385
Query: 454 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMR 612
SP+ AA+ + + FF G W + T+ + W V +A R
Sbjct: 386 SPIQAALAWGP---EKNKIYFFGGRDYWRFHLSTRRVDSPVPRRATDWRGVPSEIDAAFR 442
Query: 613 WISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
Y Y RG + +FDPV +PR V F C + + R
Sbjct: 443 DADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCTEPANTFR 489
>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
Length = 478
Score = 57.8 bits (138), Expect = 3e-08
Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Frame = +1
Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
P P C FDA STL G LFFK W T LIS W + PS
Sbjct: 283 PGPGTPAACDPTLSFDAISTL--RGEFLFFKDRHFWRKSLRTLEPGFYLISSFWPSLPSG 340
Query: 325 VDAAFRR-GHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
+DAA+ D VF+ +G++ W + E + P+ + FP +DAAV +
Sbjct: 341 LDAAYEETSKDIVFIFKGNQFWAMRGTEVQAGYPKGIHTLGFPPTVKKIDAAV----FDK 396
Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
+ + FF G W +D K ++ + +P V +A YY F G+
Sbjct: 397 EKKKTYFFVGDKYWRFDEKRQSMEPGFPKQIAEDFPGVDSKVDAAFEAFGFYYFFNGSSQ 456
Query: 652 LRFDP 666
L FDP
Sbjct: 457 LEFDP 461
>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
(MMP-24) (Membrane-type matrix metalloproteinase 5)
(MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
(MT5-MMP) [Canis familiaris].
Length = 626
Score = 54.7 bits (130), Expect = 2e-07
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
I + WK P+ +DAA+ R R +GDK WV+ + PG P L
Sbjct: 399 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 448
Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
C E D + FF+G W + + + T +W +
Sbjct: 449 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 507
Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
+IS+ Y ++G + +FD V+P YPR++ +M C + R D
Sbjct: 508 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEVERRKERRLPQD- 566
Query: 778 CSPDLVLTALLSDNHGATYA 837
D+ + ++D G+ A
Sbjct: 567 ---DVDIMVTINDVPGSVNA 583
>ref|XP_548256.2| PREDICTED: similar to matrix metalloproteinase 28 preproprotein
isoform 1 [Canis familiaris].
Length = 520
Score = 53.5 bits (127), Expect = 5e-07
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 10/212 (4%)
Frame = +1
Query: 307 KNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA-VECH 483
K SS DA G R+++ QG W P+ P LQE + G+P ++AA V
Sbjct: 322 KYCHSSFDAITVDGQQRLYIFQGSHFWEVAPDGNVSEPLPLQERWAGLPPHIEAAAVSLD 381
Query: 484 RGECQDEGVLFFQGTHTW-FWDSKTKTTKERLWPAVG-----NCSSAMRWISRYYCFRGN 645
G+ FF+G+ W F K +L A G + + + R F+G
Sbjct: 382 SGDFH-----FFKGSRCWRFRGPKPVWGSPQLCRAGGLPRHPDAALFFPPLGRLVLFKGA 436
Query: 646 QFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHG 825
++ V+P YPR ++D+ G + + L G
Sbjct: 437 RYYVLARDGLQVEPYYPRGLQDW-------GGVPKE--------------VNGALPRPDG 475
Query: 826 ATYAFRGTHYWRLDTSR---DGWHSWPIDHQW 912
+ FR YWRLD ++ W W + W
Sbjct: 476 SIIFFRDDRYWRLDQAKLQATAWGRWAAELPW 507
>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
[Canis familiaris].
Length = 661
Score = 52.8 bits (125), Expect = 9e-07
Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 21/217 (9%)
Frame = +1
Query: 145 RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG--LISER----- 303
R+ + P DV RCS FDA G FFKG W TR L+S +
Sbjct: 385 RSSTLPRKDVPHRCSTD--FDA-VAQIRGEAFFFKGKYFW---RLTRDGHLVSLQPAQMH 438
Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
W+ P SVDA + R D ++ +GD+ WV+ +E +F P +D
Sbjct: 439 RFWRGLPLQLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 498
Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
AA ++ FF+ W +D T+ + W + AM W
Sbjct: 499 AAFSW----SHNDKTYFFKDQLYWRFDEHTRRMDPGHPARSPPWRGIPSTLDDAMCWSDG 554
Query: 622 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y FRG ++ + V P YP+ ++ C D
Sbjct: 555 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRD 591
>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein
[Canis familiaris].
Length = 612
Score = 52.4 bits (124), Expect = 1e-06
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = +1
Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 437 IFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 492
Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
W + + T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 493 WVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 552
Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
+P+ + D + + PD L A++ G +Y F+G +Y +L
Sbjct: 553 GFPKLIADAWNAIPDN--------------------LDAVVDLQGSGHSYFFKGAYYLKL 592
Query: 865 D 867
+
Sbjct: 593 E 593
>ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted)
[Canis familiaris].
Length = 741
Score = 50.4 bits (119), Expect = 5e-06
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 20/224 (8%)
Frame = +1
Query: 124 PKHG--AEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGL-- 291
PK G A+ R +PD C DG FD + G M FKG W ++ R L
Sbjct: 411 PKPGPPAQPRATERPDQYGPNIC-DG-DFDTVAM-LRGEMFVFKGRWFWRVRH-NRVLDN 466
Query: 292 ----ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQEEFPGVP- 453
I W+ PS + AA+ R R +GD+ W++ E P+ L G+P
Sbjct: 467 YPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPY 526
Query: 454 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAMRW 615
+D A+ FFQ W ++ +T+ +W + S +
Sbjct: 527 DRIDTAIWWE----PTGHTFFFQEDRYWRFNEETQRGDPGYPKPISVWQGIPT-SPKGAF 581
Query: 616 ISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDR 735
+S Y ++G ++ +FD ++P YP+ + FM C ++
Sbjct: 582 LSNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQEQ 625
>ref|XP_856947.1| PREDICTED: similar to matrix metalloproteinase 14 preproprotein
isoform 2 [Canis familiaris].
Length = 582
Score = 49.7 bits (117), Expect = 8e-06
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEK-EKENPRSLQEEFPGVPS-PLD 465
I + W+ P+S++ A+ R + +GDK WV+ E P+ ++E G+P+ +D
Sbjct: 356 IGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKID 415
Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAMRWISR- 624
AA+ + FF+G + ++ + + ++W + S
Sbjct: 416 AALFW----MPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDE 471
Query: 625 --YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRG 738
Y ++GN++ +F+ V+P YP+ +M CP G
Sbjct: 472 VFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSSG 511
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,242,806
Number of extensions: 2033660
Number of successful extensions: 9493
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9410
Number of HSP's successfully gapped: 9
Length of query: 514
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 407
Effective length of database: 15,307,552
Effective search space: 6230173664
Effective search space used: 6230173664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000604.1| hemopexin precursor [Homo sapiens]. 733 0.0
Alignment gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens]. 65 2e-10
Alignment gi|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo... 62 1e-09
Alignment gi|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo... 59 1e-08
Alignment gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens]. 56 1e-07
Alignment gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo... 55 2e-07
Alignment gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s... 52 1e-06
Alignment gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot... 52 1e-06
Alignment gi|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens]. 51 3e-06
Alignment gi|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo... 51 3e-06
>ref|NP_000604.1| hemopexin precursor [Homo sapiens].
Length = 462
Score = 733 bits (1892), Expect = 0.0
Identities = 340/462 (73%), Positives = 376/462 (81%), Gaps = 9/462 (1%)
Frame = +1
Query: 31 MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
MAR LG A L LC SLAIA PL T+ HG E+KPDPDVTERCSDGW FDA
Sbjct: 1 MARVLGAPVALGLWSLCWSLAIATPLPPTSA--HGNVAEGETKPDPDVTERCSDGWSFDA 58
Query: 211 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
+TLD++G MLFFKG VW W R LISERWKN PS VDAAFR+GH+ VFLI+GDKVWV
Sbjct: 59 TTLDDNGTMLFFKGEFVWKSHKWDRELISERWKNFPSPVDAAFRQGHNSVFLIKGDKVWV 118
Query: 391 YPPEK-EKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTK 567
YPPEK EK P+ LQ+EFPG+PSPLDAAVECHRGECQ EGVLFFQG WFWD T T K
Sbjct: 119 YPPEKKEKGYPKLLQDEFPGIPSPLDAAVECHRGECQAEGVLFFQGDREWFWDLATGTMK 178
Query: 568 ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAH 747
ER WPAVGNCSSA+RW+ RYYCF+GNQFLRFDPV G V P+YPRDVRDYFM CP RGH H
Sbjct: 179 ERSWPAVGNCSSALRWLGRYYCFQGNQFLRFDPVRGEVPPRYPRDVRDYFMPCPGRGHGH 238
Query: 748 RNATHRGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
RN T G+ RCSP LVL+AL SDNHGATYAF GTHYWRLDTSRDGWHSWPI
Sbjct: 239 RNGTGHGNSTHHGPEYMRCSPHLVLSALTSDNHGATYAFSGTHYWRLDTSRDGWHSWPIA 298
Query: 904 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
HQW GPSAVDAAFSW++KLYL+QGTQVY+FLTK GYTLV YPK+LEKE+G+PHGI LD
Sbjct: 299 HQWPQGPSAVDAAFSWEEKLYLVQGTQVYVFLTKGGYTLVSGYPKRLEKEVGTPHGIILD 358
Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
+VDA F+CPG+SRLH+MAGR+LWWLDL GAQ WTELPWPHEKVD ALC EKSLGPNSC
Sbjct: 359 SVDAAFICPGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKSLGPNSC 418
Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
SA+G GLY++HGP++YCY DVEKL +AKALPQPQ+V SLLGC
Sbjct: 419 SANGPGLYLIHGPNLYCYSDVEKLNAAKALPQPQNVTSLLGC 460
>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
Length = 488
Score = 64.7 bits (156), Expect = 2e-10
Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 14/218 (6%)
Frame = +1
Query: 121 GPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWA--GQNWTRG- 288
GP+ G + + +PD + FDA ST+ G + FFK VW G G
Sbjct: 272 GPQAGIDTNEIAPLEPDAPPDACEA-SFDAVSTI--RGELFFFKAGFVWRLRGGQLQPGY 328
Query: 289 --LISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 462
L S W+ PS VDAAF ++ QG + WVY EK P L E V P+
Sbjct: 329 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-TELGLVRFPV 387
Query: 463 DAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCSSAMRWIS 621
AA+ + + FF+G W + T+ + W V +A +
Sbjct: 388 HAALVWGP---EKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDAD 444
Query: 622 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y Y RG + +FDPV +PR V F C +
Sbjct: 445 GYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGCAE 482
>ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens].
Length = 603
Score = 62.0 bits (149), Expect = 1e-09
Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
Frame = +1
Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
+ R+ + P DV RCS FDA G FFKG W R L+S +
Sbjct: 317 DNRSSAPPRKDVPHRCSTH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMH 372
Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
W+ P SVDA + R D ++ +GD+ WV+ +E +F P +D
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGID 432
Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
AA ++ FF+ W +D T+ + LW V AMRW
Sbjct: 433 AAFSW----AHNDRTYFFKDQLYWRYDDHTRHMDPGYPAQSPLWRGVPSTLDDAMRWSDG 488
Query: 622 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y FRG ++ + V P YP+ ++ C D
Sbjct: 489 ASYFFRGQEYWKVLDGELEVAPGYPQSTARDWLVCGD 525
>ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens].
Length = 562
Score = 58.9 bits (141), Expect = 1e-08
Identities = 75/267 (28%), Positives = 97/267 (36%), Gaps = 11/267 (4%)
Frame = +1
Query: 94 IAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ 273
+A P A P H + S P PD RC FDA + G FFKGP W Q
Sbjct: 295 LAPPPQPPASPTH-----SPSFPIPD---RCEGN--FDAIA-NIRGETFFFKGPWFWRLQ 343
Query: 274 NWTRGLISER-------WKNAPSSV---DAAFRRGHD-RVFLIQGDKVWVYPPEKEKENP 420
+ L+S R W+ P+ V AA+ R D R+ L G + WV+ + +
Sbjct: 344 P-SGQLVSPRPARLHRFWEGLPAQVRVVQAAYARHRDGRILLFSGPQFWVFQDRQLEGGA 402
Query: 421 RSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERLWPAVGNCS 600
R L E G+P GE D + W KT
Sbjct: 403 RPLTEL--GLPP----------GEEVDA---------VFSWPQNGKT------------- 428
Query: 601 SAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRC 780
Y RG Q+ R+D DP YPRD+ + + P
Sbjct: 429 ---------YLVRGRQYWRYDEAAARPDPGYPRDLSLWEGAPP----------------- 462
Query: 781 SPDLVLTALLSDNHGATYAFRGTHYWR 861
SPD V + N G TY F+G HYWR
Sbjct: 463 SPDDVTVS----NAGDTYFFKGAHYWR 485
>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
Length = 476
Score = 55.8 bits (133), Expect = 1e-07
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Frame = +1
Query: 169 DVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSSVDA 333
++ +C FDA STL G LFFK W +W LIS W + PS +DA
Sbjct: 284 EMPAKCDPALSFDAISTL--RGEYLFFKDRYFWRRSHWNPEPEFHLISAFWPSLPSYLDA 341
Query: 334 AFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDE 504
A+ D VF+ +G++ W + E + PR + FP +DAAV + + +
Sbjct: 342 AYEVNSRDTVFIFKGNEFWAIRGNEVQAGYPRGIHTLGFPPTIRKIDAAV----SDKEKK 397
Query: 505 GVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQFLRF 660
FF W +D +++ ++ +P V + ++ +Y F G+ F
Sbjct: 398 KTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGVEPKVDAVLQAFGFFYFFSGSSQFEF 457
Query: 661 DP 666
DP
Sbjct: 458 DP 459
>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
Length = 645
Score = 54.7 bits (130), Expect = 2e-07
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
I + WK P+ +DAA+ R R +GDK WV+ + PG P L
Sbjct: 418 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 467
Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
C E D + FF+G W + + + T +W +
Sbjct: 468 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 526
Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDR 777
+IS+ Y ++G + +FD V+P YPR++ +M C + R D
Sbjct: 527 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCNQKEVERRKERRLPQD- 585
Query: 778 CSPDLVLTALLSDNHGATYA 837
D+ + ++D G+ A
Sbjct: 586 ---DVDIMVTINDVPGSVNA 602
>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
Length = 610
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = +1
Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 435 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 490
Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
W + + T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 491 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 550
Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
+P+ + D + + PD L A++ G +Y F+G +Y +L
Sbjct: 551 GFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 590
Query: 865 D 867
+
Sbjct: 591 E 591
>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
Length = 660
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = +1
Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 485 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 540
Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
W + + T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 541 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 600
Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
+P+ + D + + PD L A++ G +Y F+G +Y +L
Sbjct: 601 GFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 640
Query: 865 D 867
+
Sbjct: 641 E 641
>ref|NP_002413.1| stromelysin-1 preproprotein [Homo sapiens].
Length = 477
Score = 51.2 bits (121), Expect = 3e-06
Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 16/185 (8%)
Frame = +1
Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQ----NWTRGLISERWKNAPSS 324
P+P C FDA STL G +L FK W LIS W + PS
Sbjct: 282 PEPGTPANCDPALSFDAVSTL--RGEILIFKDRHFWRKSLRKLEPELHLISSFWPSLPSG 339
Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
VDAA+ D VF+ +G++ W + E PR + FP +DAA+ +
Sbjct: 340 VDAAYEVTSKDLVFIFKGNQFWAIRGNEVRAGYPRGIHTLGFPPTVRKIDAAI----SDK 395
Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 651
+ FF W +D K + + +P + + +Y F G+
Sbjct: 396 EKNKTYFFVEDKYWRFDEKRNSMEPGFPKQIAEDFPGIDSKIDAVFEEFGFFYFFTGSSQ 455
Query: 652 LRFDP 666
L FDP
Sbjct: 456 LEFDP 460
>ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens].
Length = 669
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 27/230 (11%)
Frame = +1
Query: 124 PKHGAEGRNESKPDPDVTERCS---DGWG-------FDASTLDEHGAMLFFKGPSVWAGQ 273
P G + KP P V R + D +G FD + G M FKG W +
Sbjct: 338 PPPGGKPERPPKPGPPVQPRATERPDQYGPNICDGDFDTVAM-LRGEMFVFKGRWFWRVR 396
Query: 274 NWTRGL------ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQ 432
+ R L I W+ P + AA+ R R +GD+ W++ E P+ L
Sbjct: 397 H-NRVLDNYPMPIGHFWRGLPGDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLT 455
Query: 433 EEFPGVP-SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLW---P 582
G+P +D A+ FFQ W ++ +T+ +W P
Sbjct: 456 SYGLGIPYDRIDTAIWWE----PTGHTFFFQEDRYWRFNEETQRGDPGYPKPISVWQGIP 511
Query: 583 AVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
A + + Y ++G ++ +FD ++P YP+ + FM C +
Sbjct: 512 ASPKGAFLSNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQE 561
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,767,912
Number of extensions: 1980671
Number of successful extensions: 8926
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8854
Number of HSP's successfully gapped: 13
Length of query: 514
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,770,016
Effective search space: 6011396512
Effective search space used: 6011396512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059067.2| hemopexin precursor [Mus musculus]. 645 0.0
Alignment gi|NP_032632.1| stromelysin-3 precursor [Mus musculus]. 68 2e-11
Alignment gi|NP_062344.1| stromelysin-2 precursor [Mus musculus]. 59 1e-08
Alignment gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus]. 55 2e-07
Alignment gi|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musc... 55 2e-07
Alignment gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus]. 53 6e-07
Alignment gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu... 52 1e-06
Alignment gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m... 52 1e-06
Alignment gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc... 52 1e-06
>ref|NP_059067.2| hemopexin precursor [Mus musculus].
Length = 460
Score = 645 bits (1665), Expect = 0.0
Identities = 305/462 (66%), Positives = 352/462 (76%), Gaps = 9/462 (1%)
Frame = +1
Query: 31 MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
MAR + LLGLC SLA+A PL G AE N +KPD DV E C D W FDA
Sbjct: 1 MARTAVALNILVLLGLCWSLAVASPLPTANG--RVAEVENGTKPDSDVPEHCLDTWSFDA 58
Query: 211 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
+T+D +G MLFFKG VW G + TR LIS RWKN +SVDAAFR G D VFLI+ DKVWV
Sbjct: 59 ATMDHNGTMLFFKGEFVWRGHSGTRELISARWKNPITSVDAAFR-GPDSVFLIKEDKVWV 117
Query: 391 YPPEKEKEN--PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTT 564
YPPEK KEN P+ QEEFPG+P P DAAVECHRGECQ EGVLFFQG WFWD T+T
Sbjct: 118 YPPEK-KENGYPKLFQEEFPGIPYPPDAAVECHRGECQSEGVLFFQGNRKWFWDFATRTQ 176
Query: 565 KERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGH- 741
KER W VGNC++A+RW+ RYYCF+GN+FLRF+PVTG V P+YP D RDYF+SCP RGH
Sbjct: 177 KERSWSTVGNCTAALRWLERYYCFQGNKFLRFNPVTGEVPPRYPLDARDYFVSCPGRGHG 236
Query: 742 ------AHRNATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 903
AH N+TH RCSPD LTALLSD+ GATYAF G+HYWRLD+SRDGWHSWPI
Sbjct: 237 RPRNGTAHGNSTHPMHSRCSPDPGLTALLSDHRGATYAFTGSHYWRLDSSRDGWHSWPIA 296
Query: 904 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1083
H W GPS VDAAFSWDDK+YLIQGTQVY+FLTK G LV YPK+LEKELGSP GISL+
Sbjct: 297 HHWPQGPSTVDAAFSWDDKVYLIQGTQVYVFLTKGGNNLVSGYPKRLEKELGSPPGISLE 356
Query: 1084 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1263
+DA F CPG+SRL+V +GR+LWWLDL GAQ WTE+ WPHEKVD ALC +KSLGPN+C
Sbjct: 357 TIDAAFSCPGSSRLYVSSGRRLWWLDLKSGAQATWTEVSWPHEKVDGALCLDKSLGPNTC 416
Query: 1264 SASGLGLYIVHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGC 1389
S++G LY +HGP++YCY ++KL +AK+LPQPQ VNS+LGC
Sbjct: 417 SSNGSSLYFIHGPNLYCYSSIDKLNAAKSLPQPQKVNSILGC 458
>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
Length = 492
Score = 67.8 bits (164), Expect = 2e-11
Identities = 67/231 (29%), Positives = 94/231 (40%), Gaps = 13/231 (5%)
Frame = +1
Query: 97 AHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVW---A 267
A LS AG E + PDV E D ST+ G + FFK VW +
Sbjct: 272 APTLSSQAGTDTNEIALLEPETPPDVCETSFDA----VSTI--RGELFFFKAGFVWRLRS 325
Query: 268 G--QNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEF 441
G Q L S W+ PS VDAAF +++ QG + WVY EK P L +
Sbjct: 326 GRLQPGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDGEKPVLGPAPL-SKL 384
Query: 442 PGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL------WPAV-GNCS 600
SP+ AA+ + + FF+G W + +T+ + W V
Sbjct: 385 GLQGSPVHAALVWGP---EKNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTDWRGVPSEID 441
Query: 601 SAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
+A + Y Y RG+ + +FDPV V +PR V F C + + R
Sbjct: 442 AAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDCAEPANTFR 492
>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
Length = 476
Score = 58.9 bits (141), Expect = 1e-08
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Frame = +1
Query: 160 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKNAPSS 324
P P+ ++C FD+ STL G +LFFK W +W LIS W PS
Sbjct: 281 PRPETPDKCDPALSFDSVSTL--RGEVLFFKDRYFWRRSHWNPEPEFHLISAFWPTLPSD 338
Query: 325 VDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 495
+DAA+ D V + +G + W V E + P+ + FP +DAAV E
Sbjct: 339 LDAAYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAV----FEK 394
Query: 496 QDEGVLFFQGTHTWFWDSKTKTTKERLWP---------AVGNCSSAMRWISRYYCFRGNQ 648
+ + FF G W +D +T+ ++ +P + + +Y FRG+
Sbjct: 395 EKKKTYFFVGDKYWRFD-ETRHVMDKGFPRQITDDFPGIEPQVDAVLHEFGFFYFFRGSS 453
Query: 649 FLRFDP 666
FDP
Sbjct: 454 QFEFDP 459
>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
Length = 618
Score = 54.7 bits (130), Expect = 2e-07
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
Frame = +1
Query: 292 ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
I + WK P+ +DAA+ R R +GDK WV+ + PG P L
Sbjct: 391 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 440
Query: 472 VECHRGECQDEGV--------LFFQGTHTWFWDSKTKTTKE------RLWPAVGNCSSAM 609
C E D + FF+G W + + + T +W +
Sbjct: 441 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 499
Query: 610 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDR 735
+IS+ Y ++G + +FD V+P YPR++ +M C +
Sbjct: 500 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGCKQK 545
>ref|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musculus].
Length = 578
Score = 54.7 bits (130), Expect = 2e-07
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 19/213 (8%)
Frame = +1
Query: 145 RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER------- 303
R+ + P DV RC+ FDA G FFKG W R L+S +
Sbjct: 323 RSSTPPQKDVPHRCTAH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMHRF 378
Query: 304 WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 471
W+ P SVDA + R D ++ +GD+ WV+ +E +F P +DA
Sbjct: 379 WRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGIDAV 438
Query: 472 VECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAVGN-CSSAMRWI-SRY 627
++ FF+ W +D T+ + LW V + AMRW
Sbjct: 439 FSW----AHNDRTYFFKDQLYWRYDDHTRRMDPGYPAQGPLWRGVPSMLDDAMRWSDGAS 494
Query: 628 YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 726
Y FRG ++ + P YP+ ++ C
Sbjct: 495 YFFRGQEYWKVLDGELEAAPGYPQSTARDWLVC 527
>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
Length = 479
Score = 53.1 bits (126), Expect = 6e-07
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Frame = +1
Query: 115 TAGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG- 288
TA P + +P+ + CS FDA STL G +LFFK W T
Sbjct: 269 TASPDVLVVPTKSNSLEPETSPMCSSTLFFDAVSTL--RGEVLFFKDRHFWRKSLRTPEP 326
Query: 289 ---LISERWKNAPSSVDAAFR-RGHDRVFLIQGDKVWVYPPEKEKEN-PRSLQE-EFPGV 450
LIS W + PS++DAA+ D VF+ +G++ W +E P+S+ P
Sbjct: 327 EFYLISSFWPSLPSNMDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPAT 386
Query: 451 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSA 606
+DAA+ + FF W +D K ++ + +P V +
Sbjct: 387 VKKIDAAI----SNKEKRKTYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPGVDSRVDAV 442
Query: 607 MRWISRYYCFRGNQFLRFDP 666
Y F G+ L FDP
Sbjct: 443 FEAFGFLYFFSGSSQLEFDP 462
>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
Length = 662
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = +1
Query: 358 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 534
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 487 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 542
Query: 535 WFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 687
W + + T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 543 WVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 602
Query: 688 KYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWRL 864
+P+ + D + + PD L A++ G +Y F+G +Y +L
Sbjct: 603 GFPKLIADSWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLKL 642
Query: 865 D 867
+
Sbjct: 643 E 643
>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
Length = 455
Score = 52.0 bits (123), Expect = 1e-06
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
Frame = +1
Query: 154 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKNAPSS 324
+KP P + CS DA L G FKG VW + G IS W+ P +
Sbjct: 208 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 264
Query: 325 VDAA-FRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQD 501
+DAA + R +G+KVW Y K +F V LDAA+ +
Sbjct: 265 LDAAVYSPRTRRTHFFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP----VN 317
Query: 502 EGVLFFQGTHTWFWDSKTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRGNQFL 654
+ V F+G+ W WD +T KE S+AM W + Y F+G ++
Sbjct: 318 QKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKGKEYW 377
Query: 655 RFDPVTGHVDPKYPRDVRDYFMSC 726
R + V YPR+ ++M C
Sbjct: 378 RLNQQL-RVAKGYPRNT-THWMHC 399
>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
Length = 527
Score = 52.0 bits (123), Expect = 1e-06
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
Frame = +1
Query: 154 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKNAPSS 324
+KP P + CS DA L G FKG VW + G IS W+ P +
Sbjct: 280 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 336
Query: 325 VDAA-FRRGHDRVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQD 501
+DAA + R +G+KVW Y K +F V LDAA+ +
Sbjct: 337 LDAAVYSPRTRRTHFFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP----VN 389
Query: 502 EGVLFFQGTHTWFWDSKTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRGNQFL 654
+ V F+G+ W WD +T KE S+AM W + Y F+G ++
Sbjct: 390 QKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKGKEYW 449
Query: 655 RFDPVTGHVDPKYPRDVRDYFMSC 726
R + V YPR+ ++M C
Sbjct: 450 RLNQQL-RVAKGYPRNT-THWMHC 471
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,187,514
Number of extensions: 1634316
Number of successful extensions: 7147
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7083
Number of HSP's successfully gapped: 9
Length of query: 514
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 408
Effective length of database: 12,433,743
Effective search space: 5072967144
Effective search space used: 5072967144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999118.1| hemopexin precursor [Sus scrofa]. 986 0.0
Alignment gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa]. 62 9e-10
Alignment gi|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metal... 60 3e-09
Alignment gi|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like ... 60 4e-09
Alignment gi|NP_001159780.1| stromelysin-1 [Sus scrofa]. 52 7e-07
Alignment gi|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus ... 50 3e-06
Alignment gi|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa]. 50 4e-06
Alignment gi|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus ... 49 8e-06
>ref|NP_999118.1| hemopexin precursor [Sus scrofa].
Length = 459
Score = 986 bits (2549), Expect = 0.0
Identities = 456/459 (99%), Positives = 456/459 (99%)
Frame = +1
Query: 31 MARALGTVGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 210
MARALGTV APWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA
Sbjct: 1 MARALGTVEAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 60
Query: 211 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 390
STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV
Sbjct: 61 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 120
Query: 391 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDS TKTTKE
Sbjct: 121 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 180
Query: 571 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHR 750
RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCP RGHAHR
Sbjct: 181 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 240
Query: 751 NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 930
NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA
Sbjct: 241 NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 300
Query: 931 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1110
VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP
Sbjct: 301 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 360
Query: 1111 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1290
GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI
Sbjct: 361 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 420
Query: 1291 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS 1407
VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS
Sbjct: 421 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLGCHRSRGS 459
>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
Length = 491
Score = 62.0 bits (149), Expect = 9e-10
Identities = 56/188 (29%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Frame = +1
Query: 229 GAMLFFKGPSVWAG-----QNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY 393
G + FFK VW Q L S W+ PS VDAAF ++ QG + WVY
Sbjct: 309 GELFFFKAGFVWRLRRGHLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVY 368
Query: 394 PPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE 570
EK P L E PG SP+ AA+ + V FF+G W + T
Sbjct: 369 DGEKPALGPAPLSELGLPG--SPVHAALVWGP---EKNKVYFFRGGDYWRFHPSTHRVDS 423
Query: 571 RL------WPAV-GNCSSAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 726
+ W V +A + Y Y RG + +FDPV +PR V F C
Sbjct: 424 PVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGLDFFGC 483
Query: 727 PDRGHAHR 750
+ + R
Sbjct: 484 SEPANTFR 491
>ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus
scrofa].
Length = 592
Score = 60.1 bits (144), Expect = 3e-09
Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 19/217 (8%)
Frame = +1
Query: 139 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 303
+ R+ S P DV RCS FDA G LFFKG W N R L+S +
Sbjct: 317 DNRSSSPPRKDVPHRCSTH--FDA-VAQIXGESLFFKGKYFWR-LNRDRHLVSLQPVQMH 372
Query: 304 --WKNAP---SSVDAAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 465
W+ SVDA + R D ++ +GD+ WV+ +E +F P +D
Sbjct: 373 RFWRGLLLHLDSVDAVYERTSDHKIIFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 432
Query: 466 AAVECHRGECQDEGVLFFQGTHTWFWDSKTK------TTKERLWPAV-GNCSSAMRWI-S 621
AA ++ FF+ W +D T+ + W V AMRW
Sbjct: 433 AAFSW----AHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSDG 488
Query: 622 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
Y FRG ++ + V P YP+ ++ C D
Sbjct: 489 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRD 525
>ref|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like [Sus scrofa].
Length = 780
Score = 59.7 bits (143), Expect = 4e-09
Identities = 64/245 (26%), Positives = 85/245 (34%), Gaps = 11/245 (4%)
Frame = +1
Query: 160 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER-------WKNAP 318
P V +RC FDA + G FFKGP W Q + L+S R W+ P
Sbjct: 313 PSQPVPDRCEGN--FDAIA-NIRGETFFFKGPWFWRLQP-SGQLVSPRPARLHRFWEGLP 368
Query: 319 SSVD---AAFRRGHD-RVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 486
+ V AA+ R D R+ L G + WV+ + + PR L E +DA
Sbjct: 369 AQVQVIQAAYARHPDGRILLFSGPQFWVFQDRRLEGAPRPLTELGLPPQEQVDAVFS--- 425
Query: 487 GECQDEGVLFFQGTHTWFWDSKTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDP 666
WP G + Y RG ++ R+D
Sbjct: 426 ------------------------------WPLNG----------KTYLVRGQRYWRYDE 445
Query: 667 VTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLSDNHGATYAFRG 846
DP YPRD+ + A H DD + N G TY F+G
Sbjct: 446 AAASPDPGYPRDLSLW-----------EGAPHAPDD----------VTVSNTGDTYFFKG 484
Query: 847 THYWR 861
HYWR
Sbjct: 485 AHYWR 489
>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
Length = 477
Score = 52.4 bits (124), Expect = 7e-07
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Frame = +1
Query: 118 AGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTR--- 285
A P E + P C FDA STL G +LFFK W +++ R
Sbjct: 268 ASPPEPVEPTESTPQKPGTPATCDPALSFDAISTL--RGEILFFKDRHFWR-KSFRRLEP 324
Query: 286 --GLISERWKNAPSSVDAAFR-RGHDRVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGV 450
LIS W PSS+DAA D VF+ +G + W + + + PRS+ FP
Sbjct: 325 EFHLISSFWPPLPSSIDAACEVISKDTVFIFKGTQFWAIRGNDVQPGYPRSIHTLGFPST 384
Query: 451 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKERL-------WPAV-GNCSSA 606
+DAA+ + + + FF W +D K ++ + +P V +
Sbjct: 385 VKKIDAAI----SDKETKKTYFFVEDKYWRFDEKRQSMEPGFPKQIVEDFPGVEPKVDAV 440
Query: 607 MRWISRYYCFRGNQFLRFDP 666
+Y F G+ FDP
Sbjct: 441 FEAFGFFYFFNGSSQFEFDP 460
>ref|XP_003127010.2| PREDICTED: matrix metalloproteinase-15 [Sus scrofa].
Length = 819
Score = 50.4 bits (119), Expect = 3e-06
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 19/222 (8%)
Frame = +1
Query: 124 PKHG--AEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGL-- 291
PK G A+ R +PD C DG FD + G M FKG W ++ R L
Sbjct: 492 PKPGPPAQPRATERPDQYGPNIC-DG-DFDTVAM-LRGEMFVFKGRWFWRVRH-NRVLDN 547
Query: 292 ----ISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWVY-PPEKEKENPRSLQEEFPGVP- 453
I W+ PS + AA+ R R +GD+ W++ E P+ L G+P
Sbjct: 548 YPMPIGHFWRGLPSDISAAYERQDGRFVFFKGDRYWLFREANLEPGYPQPLTSYGLGIPY 607
Query: 454 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTTKE------RLW---PAVGNCSSA 606
+D A+ FFQ W ++ T+ +W PA +
Sbjct: 608 DRIDTAIWWE----PTGHTFFFQEDRYWRFNEDTQRGDPGYPKPISVWQGIPASPKGAFL 663
Query: 607 MRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPD 732
+ Y ++G ++ +FD ++P YP+ + FM C +
Sbjct: 664 SNDAAYTYFYKGTKYWKFDNERLRMEPGYPKSILRDFMGCQE 705
>ref|NP_999357.1| 72 kDa type IV collagenase [Sus scrofa].
Length = 661
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
Frame = +1
Query: 358 VFLIQGDKVW--VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTH 531
+F + +W V P +K P +P +P +DA E Q+E +FF G
Sbjct: 486 IFFFKDRFIWRTVTPRDKPMVAPAGATF-WPELPEKIDAVYEAP----QEEKAVFFAGNE 540
Query: 532 TWFWDSKT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVD 684
W + + T T L P V +A W + Y F G++F R++ V +D
Sbjct: 541 YWVYSASTLERGYPKPLTSLGLPPDVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD 600
Query: 685 PKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDLVLTALLS-DNHGATYAFRGTHYWR 861
P +P+ + D + + PD L A++ G +Y F+G +Y +
Sbjct: 601 PGFPKLIADAWNAIPDN--------------------LDAVVDLQGGGHSYFFKGAYYLK 640
Query: 862 LD 867
L+
Sbjct: 641 LE 642
>ref|XP_003126306.2| PREDICTED: matrix metalloproteinase-19 [Sus scrofa].
Length = 539
Score = 48.9 bits (115), Expect = 8e-06
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Frame = +1
Query: 445 GVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSKTKTT--KERLWPAVGNCSSAMRWI 618
G+P LDAAV R + + FF+G W + + + +RL N +A+ W
Sbjct: 331 GLPGNLDAAVYSPR----TQWIHFFKGDKVWRYVNFKMSPGFPKRLNRVEPNLDAALYWP 386
Query: 619 --SRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPDRGHAHRNATHRGDDRCSPDL 792
+ + F+G+ + ++D + YP+ ++ F PD+
Sbjct: 387 LNQKVFLFKGSGYWQWDELAQMDFSSYPKPIKRLFTGVPDQP------------------ 428
Query: 793 VLTALLSDNHGATYAFRGTHYWRLDTS--------RDGWHSWPIDHQWSHGPSAVD 936
+A +S G Y F+G YWRL+ RD H+W H + P+ +D
Sbjct: 429 --SAAMSWRDGRVYFFKGKQYWRLNRQLRVEKGYPRDIAHNWMHCHPQNSDPTPLD 482
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,335,197
Number of extensions: 1277927
Number of successful extensions: 5923
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5874
Number of HSP's successfully gapped: 8
Length of query: 514
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,779,541
Effective search space: 3608391351
Effective search space used: 3608391351
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007074
(1543 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 749 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 749 bits (378), Expect = 0.0
Identities = 387/390 (99%)
Strand = Plus / Plus
Query: 1136 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggaccgagc 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3954864 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggacagagc 3954923
Query: 1196 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954924 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 3954983
Query: 1256 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccatgtctactgct 1315
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3954984 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccacgtctactgct 3955043
Query: 1316 acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955044 acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 3955103
Query: 1376 gcctgctgggctgccatcggtctcggggctcctgatgcgagcctggcccagctcctcctc 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955104 gcctgctgggctgccatcggtctcggggctcctgatgcgagcctggcccagctcctcctc 3955163
Query: 1436 ctggctttccttgcaatgaagccagagggcttcctggcttgatcaaagctgtaaatcaac 1495
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955164 caggctttccttgcaatgaagccagagggcttcctggcttgatcaaagctgtaaatcaac 3955223
Query: 1496 catatggtctaataaaaaatgaacgataac 1525
||||||||||||||||||||||||||||||
Sbjct: 3955224 catatggtctaataaaaaatgaacgataac 3955253
Score = 412 bits (208), Expect = e-112
Identities = 214/216 (99%)
Strand = Plus / Plus
Query: 522 aggcacccacacctggttctgggactccaagacaaaaaccacaaaggagcgcctctggcc 581
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3949767 aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 3949826
Query: 582 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949827 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 3949886
Query: 642 taaccagttcctgcgctttgaccctgtcacgggacatgtggatcccaaataccctcggga 701
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3949887 taaccagttcctgcgctttgaccccgtcacgggacatgtggatcccaaataccctcggga 3949946
Query: 702 tgtccgcgactacttcatgtcctgcccggacagagg 737
||||||||||||||||||||||||||||||||||||
Sbjct: 3949947 tgtccgcgactacttcatgtcctgcccggacagagg 3949982
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 972 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954581 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 3954640
Query: 1032 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954641 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 3954700
Query: 1092 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 1139
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954701 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 3954748
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 370 cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949038 cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 3949097
Query: 430 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949098 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 3949157
Query: 490 gaatgccaagatgagggcgtcctcttcttccaagg 524
|||||||||||||||||||||||||||||||||||
Sbjct: 3949158 gaatgccaagatgagggcgtcctcttcttccaagg 3949192
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 844 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954377 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 3954436
Query: 904 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954437 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 3954496
Query: 964 tatctgatccagg 976
|||||||||||||
Sbjct: 3954497 tatctgatccagg 3954509
Score = 248 bits (125), Expect = 8e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 249 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947405 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 3947464
Query: 309 aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947465 aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 3947524
Query: 369 ccagg 373
|||||
Sbjct: 3947525 ccagg 3947529
Score = 212 bits (107), Expect = 4e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 735 aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950226 aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 3950285
Query: 795 cttgactgcactgctgtctgacaaccacggtgccacctatgccttccgtgg 845
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3950286 cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 3950336
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 23 agctcatcatggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgct 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946506 agctcatcatggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgct 3946565
Query: 83 gctctctggccatcgcccaccctctttctctg 114
||||||||||||||||||||||||||||||||
Sbjct: 3946566 gctctctggccatcgcccaccctctttctctg 3946597
Score = 139 bits (70), Expect = 5e-30
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 178 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946897 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 3946956
Query: 238 ctgttttttaaagg 251
|||||||| |||||
Sbjct: 3946957 ctgtttttcaaagg 3946970
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 114 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccagacccagacgt 173
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3946747 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 3946806
Query: 174 gaccg 178
|||||
Sbjct: 3946807 gaccg 3946811
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,088,903
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 10
Length of query: 1543
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1522
Effective length of database: 2,808,413,156
Effective search space: 4274404823432
Effective search space used: 4274404823432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)