Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029801.1| epoxide hydrolase 1 [Bos taurus]. 393 e-129
>ref|NP_001029801.1| epoxide hydrolase 1 [Bos taurus].
Length = 451
Score = 393 bits (1009), Expect(3) = e-129
Identities = 182/199 (91%), Positives = 187/199 (93%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEILLASVLGFVIYWFVSKDKEETL L DGWWGPG RP A ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLPLEDGWWGPGVRPTAGEDKSIRPFKVETSDEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
NDLHQRI++ RLTPPLEDSRFHYGFNSNYLKKIISYWRN FDWRKQVE+LNKYPHFKTKI
Sbjct: 61 NDLHQRIDRVRLTPPLEDSRFHYGFNSNYLKKIISYWRNEFDWRKQVEILNKYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPP LPSG+T KPLLMVHGWPG FYEFYKIIP LTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPNLPSGQTPKPLLMVHGWPGSFYEFYKIIPFLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKGF 813
ICPSIPGY FSEASSKKGF
Sbjct: 181 ICPSIPGYSFSEASSKKGF 199
Score = 82.0 bits (201), Expect(3) = e-129
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLMLRLGFQ+FY+QGGDWG+LICTNMAQLVPS
Sbjct: 200 NSVATARIFYKLMLRLGFQKFYIQGGDWGALICTNMAQLVPS 241
Score = 28.1 bits (61), Expect(3) = e-129
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 938 HLKGLHLNVPLVLR----ICLPPEPFSWGRRFGKAF 1033
H+KGLHLN+ L+LR + LP GR FG F
Sbjct: 242 HIKGLHLNMALILRNFYTLTLP-----LGRCFGGLF 272
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,976,748
Number of extensions: 1308339
Number of successful extensions: 5303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5289
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 381 e-125
Alignment gi|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isofo... 381 e-125
Alignment gi|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 381 e-124
>ref|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 1 [Canis
familiaris].
Length = 454
Score = 381 bits (979), Expect(3) = e-125
Identities = 173/198 (87%), Positives = 184/198 (92%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKG 810
ICPSIPGY FSEASSKKG
Sbjct: 181 ICPSIPGYSFSEASSKKG 198
Score = 84.0 bits (206), Expect(3) = e-125
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLMLRLGFQEFY+QGGDWGSLICTNMAQ+VPS
Sbjct: 200 NSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVPS 241
Score = 25.0 bits (53), Expect(3) = e-125
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 938 HLKGLHLNVPLVL 976
H+KGLHLN+ L+L
Sbjct: 242 HVKGLHLNMALIL 254
>ref|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isoform 3 [Canis
familiaris].
Length = 412
Score = 381 bits (979), Expect(3) = e-125
Identities = 173/198 (87%), Positives = 184/198 (92%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKG 810
ICPSIPGY FSEASSKKG
Sbjct: 181 ICPSIPGYSFSEASSKKG 198
Score = 84.0 bits (206), Expect(3) = e-125
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLMLRLGFQEFY+QGGDWGSLICTNMAQ+VPS
Sbjct: 200 NSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVPS 241
Score = 25.0 bits (53), Expect(3) = e-125
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 938 HLKGLHLNVPLVL 976
H+KGLHLN+ L+L
Sbjct: 242 HVKGLHLNMALIL 254
>ref|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 2 [Canis
familiaris].
Length = 441
Score = 381 bits (979), Expect(2) = e-124
Identities = 173/198 (87%), Positives = 184/198 (92%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKG 810
ICPSIPGY FSEASSKKG
Sbjct: 181 ICPSIPGYSFSEASSKKG 198
Score = 82.4 bits (202), Expect(2) = e-124
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVP 935
+SVA ARIFYKLMLRLGFQEFY+QGGDWGSLICTNMAQ+VP
Sbjct: 200 NSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,038,859
Number of extensions: 1361169
Number of successful extensions: 5743
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5728
Number of HSP's successfully gapped: 8
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000111.1| epoxide hydrolase 1 [Homo sapiens]. 387 e-127
Alignment gi|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens]. 387 e-127
>ref|NP_000111.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 387 bits (993), Expect(3) = e-127
Identities = 176/199 (88%), Positives = 187/199 (93%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKGF 813
ICPSIPGYGFSEASSKKGF
Sbjct: 181 ICPSIPGYGFSEASSKKGF 199
Score = 84.7 bits (208), Expect(3) = e-127
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLMLRLGFQEFY+QGGDWGSLICTNMAQLVPS
Sbjct: 200 NSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVPS 241
Score = 25.4 bits (54), Expect(3) = e-127
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 938 HLKGLHLNVPLVL 976
H+KGLHLN+ LVL
Sbjct: 242 HVKGLHLNMALVL 254
>ref|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 387 bits (993), Expect(3) = e-127
Identities = 176/199 (88%), Positives = 187/199 (93%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKGF 813
ICPSIPGYGFSEASSKKGF
Sbjct: 181 ICPSIPGYGFSEASSKKGF 199
Score = 84.7 bits (208), Expect(3) = e-127
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLMLRLGFQEFY+QGGDWGSLICTNMAQLVPS
Sbjct: 200 NSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVPS 241
Score = 25.4 bits (54), Expect(3) = e-127
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 938 HLKGLHLNVPLVL 976
H+KGLHLN+ LVL
Sbjct: 242 HVKGLHLNMALVL 254
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,838,459
Number of extensions: 1312226
Number of successful extensions: 5264
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5257
Number of HSP's successfully gapped: 6
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034275.1| epoxide hydrolase 1 [Mus musculus]. 384 e-124
>ref|NP_034275.1| epoxide hydrolase 1 [Mus musculus].
Length = 455
Score = 384 bits (986), Expect(3) = e-124
Identities = 174/198 (87%), Positives = 188/198 (94%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLE++LASVLGFVIYWFVS+DKEETL L DGWWGPGS+P+A EDESIRPFKVETSDEEI
Sbjct: 1 MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKEDESIRPFKVETSDEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
DLHQRI++FR +PPLE SRFHYGFNS+YLKK++S+WRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 KDLHQRIDRFRASPPLEGSRFHYGFNSSYLKKVVSFWRNEFDWRKQVEILNQYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLPSGRT KPLLMVHGWPG FYEFYKIIPLLTDPK HGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKIIPLLTDPKTHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKG 810
ICPSIPGYGFSEASSKKG
Sbjct: 181 ICPSIPGYGFSEASSKKG 198
Score = 77.4 bits (189), Expect(3) = e-124
Identities = 34/42 (80%), Positives = 40/42 (95%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS 938
+SVA ARIFYKLM RLGFQ+FY+QGGDWGSLICTN+AQ+VP+
Sbjct: 200 NSVATARIFYKLMSRLGFQKFYIQGGDWGSLICTNIAQMVPN 241
Score = 26.6 bits (57), Expect(3) = e-124
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 938 HLKGLHLNVPLVLRICLPPEPFSWGRRFGK 1027
H+KGLHLN+ + R P G+RFG+
Sbjct: 242 HVKGLHLNMSFISRNIYSLTPL-LGQRFGR 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,714,148
Number of extensions: 1075499
Number of successful extensions: 4064
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999520.1| epoxide hydrolase 1 [Sus scrofa]. 426 e-140
>ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa].
Length = 454
Score = 426 bits (1096), Expect(2) = e-140
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +1
Query: 217 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 396
MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 60
Query: 397 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 576
NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI
Sbjct: 61 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 120
Query: 577 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 756
EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 757 ICPSIPGYGFSEASSKKGF 813
ICPSIPGYGFSEASSKKGF
Sbjct: 181 ICPSIPGYGFSEASSKKGF 199
Score = 92.0 bits (227), Expect(2) = e-140
Identities = 52/74 (70%), Positives = 53/74 (71%)
Frame = +3
Query: 813 HSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPST*KACT*TYPWF*EYVYP 992
+SVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPS K VY
Sbjct: 200 NSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVPSHVKGLHLNVALVLRNVYT 259
Query: 993 LNLFPGDGVLGRLF 1034
L F G LGRLF
Sbjct: 260 LTFFLGRR-LGRLF 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,821,490
Number of extensions: 851150
Number of successful extensions: 3612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3598
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007077
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 420 e-115
>Sscrofa_Chr10
|| Length = 79102373
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 1 gactccgaggccccgcctctccccggggctcgctgaccagccatctccttccccatggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036354 gactccgaggccccgcctctccccggggctcgctgaccagccatctccttccccatggac 16036295
Query: 61 ccgccgctcccgagagccaggaggcggagggcattgtttattattttatattttggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036294 ccgccgctcccgagagccaggaggcggagggcattgtttattattttatattttggaaga 16036235
Query: 121 tttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgcagtcgtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036234 tttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgcagtcgtggc 16036175
Query: 181 tcgccttcgcaccgagggtccccaagttcagg 212
||||||||||||||||||||||||||||||||
Sbjct: 16036174 tcgccttcgcaccgagggtccccaagttcagg 16036143
Score = 410 bits (207), Expect = e-112
Identities = 221/228 (96%)
Strand = Plus / Minus
Query: 579 agggctggacatccacttcatccacgtgaagnnnnnnnagctgccctccggccgcaccgc 638
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16023141 agggctggacatccacttcatccacgtgaagcccccccagctgccctccggccgcaccgc 16023082
Query: 639 gaagcccttgctgatggtgcatggctggcctggctgcttctacgagttttataagatcat 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16023081 gaagcccttgctgatggtgcatggctggcctggctgcttctacgagttttataagatcat 16023022
Query: 699 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16023021 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 16022962
Query: 759 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaa 806
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022961 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaa 16022914
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 209 caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032200 caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 16032141
Query: 269 tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032140 tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 16032081
Query: 329 caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032080 caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 16032021
Query: 389 aggagatcaacg 400
||||||||||||
Sbjct: 16032020 aggagatcaacg 16032009
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 400 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029503 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 16029444
Query: 460 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029443 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 16029384
Query: 520 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029383 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 16029324
Query: 580 gg 581
||
Sbjct: 16029323 gg 16029322
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 814 actcagtggctgctgccaggatcttttacaagctgatgctgcggctgggcttccaggaat 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022281 actcagtggctgctgccaggatcttttacaagctgatgctgcggctgggcttccaggaat 16022222
Query: 874 tctaccttcaaggcggagactgggggtccctgatctgcaccaacatggcccagctggtgc 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022221 tctaccttcaaggcggagactgggggtccctgatctgcaccaacatggcccagctggtgc 16022162
Query: 934 ccag 937
||||
Sbjct: 16022161 ccag 16022158
Score = 105 bits (53), Expect = 5e-20
Identities = 87/93 (93%), Gaps = 4/93 (4%)
Strand = Plus / Minus
Query: 942 tgaaaggcctgcacttgaacgtacccctggttttaagaatatgtctaccccctgaacctt 1001
||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||
Sbjct: 16021636 tgaaaggcctgcacttgaacgtagccctggttttaagaa-atgtctacaccctg-acctt 16021579
Query: 1002 tttcctggggacggcgttttgggaaggcttttt 1034
|||||| ||||||||| ||||||||||||||||
Sbjct: 16021578 tttcct-gggacggcg-tttgggaaggcttttt 16021548
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,705,986
Number of extensions: 265
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 6
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)