Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029801.1| epoxide hydrolase 1 [Bos taurus]. 731 0.0
>ref|NP_001029801.1| epoxide hydrolase 1 [Bos taurus].
Length = 451
Score = 731 bits (1888), Expect(3) = 0.0
Identities = 348/401 (86%), Positives = 367/401 (91%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEILLASVLGFVIYWFVSKDKEETL L DGWWGPG RP A ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLPLEDGWWGPGVRPTAGEDKSIRPFKVETSDEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
NDLHQRI++ RLTPPLEDSRFHYGFNSNYLKKIISYWRN FDWRKQVE+LNKYPHFKTKI
Sbjct: 61 NDLHQRIDRVRLTPPLEDSRFHYGFNSNYLKKIISYWRNEFDWRKQVEILNKYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPP LPSG+T KPLLMVHGWPG FYEFYKIIP LTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPNLPSGQTPKPLLMVHGWPGSFYEFYKIIPFLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGY FSEASSKKGFNSVATARIFYKLMLRLGFQ+FY+QGGDWGALICTNMAQLVP
Sbjct: 181 ICPSIPGYSFSEASSKKGFNSVATARIFYKLMLRLGFQKFYIQGGDWGALICTNMAQLVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1089
SH+KGLHLN+AL+LRN Y LT YTERD+EL+YPFKK F++L+RESGY+H
Sbjct: 241 SHIKGLHLNMALILRNFYTLTLPLGRCFGGLFGYTERDMELIYPFKKIFFSLLRESGYLH 300
Query: 1090 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1269
IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLEDGGLERKFSLD+LLT IMLY
Sbjct: 301 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNSEFRDLEDGGLERKFSLDDLLTGIMLY 360
Query: 1270 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
WTTGTITSSQRFYKENLGQ NKHE +KV+VPTGFAAFP
Sbjct: 361 WTTGTITSSQRFYKENLGQ---VNKHEMLKVYVPTGFAAFP 398
Score = 50.4 bits (119), Expect(3) = 0.0
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P E++H P+KWVK +YP LISYSYM RGG
Sbjct: 398 PCELMHLPEKWVKTKYPNLISYSYMPRGG 426
Score = 26.6 bits (57), Expect(3) = 0.0
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 1469 GGHFAAFEEP 1498
GGHFAAFEEP
Sbjct: 425 GGHFAAFEEP 434
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,375,328
Number of extensions: 1776871
Number of successful extensions: 7731
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7702
Number of HSP's successfully gapped: 3
Length of query: 499
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 393
Effective length of database: 14,174,046
Effective search space: 5570400078
Effective search space used: 5570400078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 712 0.0
Alignment gi|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 684 0.0
Alignment gi|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isofo... 621 0.0
>ref|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 1 [Canis
familiaris].
Length = 454
Score = 712 bits (1837), Expect(2) = 0.0
Identities = 338/402 (84%), Positives = 363/402 (90%), Gaps = 1/402 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
SHVKGLHLN+AL+L YILT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 300 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 359
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP
Sbjct: 360 YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFP 401
Score = 53.5 bits (127), Expect(2) = 0.0
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P E++H P+KWVK +YPKLISYSYMARGG
Sbjct: 401 PCELMHVPEKWVKAKYPKLISYSYMARGG 429
>ref|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 2 [Canis
familiaris].
Length = 441
Score = 684 bits (1764), Expect(2) = 0.0
Identities = 327/402 (81%), Positives = 350/402 (87%), Gaps = 1/402 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
R YILT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 --------------RRPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 286
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 287 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 346
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP
Sbjct: 347 YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFP 388
Score = 53.5 bits (127), Expect(2) = 0.0
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P E++H P+KWVK +YPKLISYSYMARGG
Sbjct: 388 PCELMHVPEKWVKAKYPKLISYSYMARGG 416
>ref|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isoform 3 [Canis
familiaris].
Length = 412
Score = 621 bits (1602), Expect(2) = 0.0
Identities = 304/402 (75%), Positives = 326/402 (81%), Gaps = 1/402 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
SHVKGLHLN+AL+L YILT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+R
Sbjct: 300 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDR------------- 346
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
+KV+VPTGFAAFP
Sbjct: 347 -----------------------------MKVYVPTGFAAFP 359
Score = 53.5 bits (127), Expect(2) = 0.0
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P E++H P+KWVK +YPKLISYSYMARGG
Sbjct: 359 PCELMHVPEKWVKAKYPKLISYSYMARGG 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,216,352
Number of extensions: 1847538
Number of successful extensions: 8272
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8236
Number of HSP's successfully gapped: 7
Length of query: 499
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 392
Effective length of database: 15,307,552
Effective search space: 6000560384
Effective search space used: 6000560384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000111.1| epoxide hydrolase 1 [Homo sapiens]. 707 0.0
Alignment gi|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens]. 707 0.0
>ref|NP_000111.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 707 bits (1825), Expect(3) = 0.0
Identities = 339/402 (84%), Positives = 360/402 (89%), Gaps = 1/402 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
SHVKGLHLN+ALVL N LT TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
YWTTGTI SSQRFYKENLGQG M KHE +KV+VPTGF+AFP
Sbjct: 361 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFP 402
Score = 54.3 bits (129), Expect(3) = 0.0
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
PFE+LH P+KWV+ +YPKLISYSYM RGG
Sbjct: 402 PFELLHTPEKWVRFKYPKLISYSYMVRGG 430
Score = 26.6 bits (57), Expect(3) = 0.0
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 1469 GGHFAAFEEP 1498
GGHFAAFEEP
Sbjct: 429 GGHFAAFEEP 438
>ref|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 707 bits (1825), Expect(3) = 0.0
Identities = 339/402 (84%), Positives = 360/402 (89%), Gaps = 1/402 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
SHVKGLHLN+ALVL N LT TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFP 1392
YWTTGTI SSQRFYKENLGQG M KHE +KV+VPTGF+AFP
Sbjct: 361 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFP 402
Score = 54.3 bits (129), Expect(3) = 0.0
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
PFE+LH P+KWV+ +YPKLISYSYM RGG
Sbjct: 402 PFELLHTPEKWVRFKYPKLISYSYMVRGG 430
Score = 26.6 bits (57), Expect(3) = 0.0
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 1469 GGHFAAFEEP 1498
GGHFAAFEEP
Sbjct: 429 GGHFAAFEEP 438
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,550,149
Number of extensions: 1774832
Number of successful extensions: 7330
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7300
Number of HSP's successfully gapped: 6
Length of query: 499
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 392
Effective length of database: 14,770,016
Effective search space: 5789846272
Effective search space used: 5789846272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034275.1| epoxide hydrolase 1 [Mus musculus]. 706 0.0
>ref|NP_034275.1| epoxide hydrolase 1 [Mus musculus].
Length = 455
Score = 706 bits (1821), Expect(3) = 0.0
Identities = 328/403 (81%), Positives = 366/403 (90%), Gaps = 1/403 (0%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLE++LASVLGFVIYWFVS+DKEETL L DGWWGPGS+P+A EDESIRPFKVETSDEEI
Sbjct: 1 MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKEDESIRPFKVETSDEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
DLHQRI++FR +PPLE SRFHYGFNS+YLKK++S+WRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 KDLHQRIDRFRASPPLEGSRFHYGFNSSYLKKVVSFWRNEFDWRKQVEILNQYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLPSGRT KPLLMVHGWPG FYEFYKIIPLLTDPK HGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKIIPLLTDPKTHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGYGFSEASSKKG NSVATARIFYKLM RLGFQ+FY+QGGDWG+LICTN+AQ+VP
Sbjct: 181 ICPSIPGYGFSEASSKKGLNSVATARIFYKLMSRLGFQKFYIQGGDWGSLICTNIAQMVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1086
+HVKGLHLN++ + RN+Y LT YTE+DLELLYPFK K FY +MRESGY+
Sbjct: 241 NHVKGLHLNMSFISRNIYSLTPLLGQRFGRFLGYTEKDLELLYPFKEKVFYNIMRESGYL 300
Query: 1087 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1266
HIQ+TKPDTVGCALNDSPVGLAAYILEKFSTWT E+R+LEDGGLERKFSL++LLT IM+
Sbjct: 301 HIQATKPDTVGCALNDSPVGLAAYILEKFSTWTKSEYRELEDGGLERKFSLEDLLTNIMI 360
Query: 1267 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPS 1395
YWTTGTI SSQRFYKENLGQGVM ++HE +KV VPTG++AFPS
Sbjct: 361 YWTTGTIVSSQRFYKENLGQGVMVHRHEGMKVFVPTGYSAFPS 403
Score = 53.1 bits (126), Expect(3) = 0.0
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P E+LH P+KWVK +YPKLISYSYM RGG
Sbjct: 402 PSEILHAPEKWVKVKYPKLISYSYMERGG 430
Score = 26.6 bits (57), Expect(3) = 0.0
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 1469 GGHFAAFEEP 1498
GGHFAAFEEP
Sbjct: 429 GGHFAAFEEP 438
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,718,193
Number of extensions: 1449667
Number of successful extensions: 5835
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5783
Number of HSP's successfully gapped: 3
Length of query: 499
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 393
Effective length of database: 12,433,743
Effective search space: 4886460999
Effective search space used: 4886460999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999520.1| epoxide hydrolase 1 [Sus scrofa]. 802 0.0
>ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa].
Length = 454
Score = 802 bits (2072), Expect(2) = 0.0
Identities = 387/402 (96%), Positives = 388/402 (96%)
Frame = +1
Query: 190 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 369
MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 60
Query: 370 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 549
NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI
Sbjct: 61 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 120
Query: 550 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 729
EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 730 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 909
ICPSIPGYGFSEASSKKGFNSVA ARIFYKLMLRLGFQEFYLQGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVP 240
Query: 910 SHVKGLHLNVALVLRNVYILTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1089
SHVKGLHLNVALVLRNVY LT YTERDLELLYPFKKTFYTLMRESGYMH
Sbjct: 241 SHVKGLHLNVALVLRNVYTLTFFLGRRLGRLFGYTERDLELLYPFKKTFYTLMRESGYMH 300
Query: 1090 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1269
IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY
Sbjct: 301 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 360
Query: 1270 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPS 1395
WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPS
Sbjct: 361 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPS 402
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 1389 PFEVLHCPKKWVKNQYPKLISYSYMARGG 1475
P EVLHCP+KWVKN+YPKLISYSYMARGG
Sbjct: 401 PSEVLHCPEKWVKNKYPKLISYSYMARGG 429
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,456,114
Number of extensions: 1154454
Number of successful extensions: 5223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5189
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,779,541
Effective search space: 3476698236
Effective search space used: 3476698236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007078
(1498 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 408 e-111
gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591 113 3e-22
Sscrofa_Chr12 64 2e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 408 bits (206), Expect = e-111
Identities = 223/231 (96%)
Strand = Plus / Minus
Query: 552 agggctggacatccacttcatccacgtgaagnnnnnnnagctgccctccggccgcaccgc 611
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16023141 agggctggacatccacttcatccacgtgaagcccccccagctgccctccggccgcaccgc 16023082
Query: 612 gaagcccttgctgatggtgcacggctggcctggctgcttctacgagttttataagatcat 671
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16023081 gaagcccttgctgatggtgcatggctggcctggctgcttctacgagttttataagatcat 16023022
Query: 672 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16023021 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 16022962
Query: 732 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 782
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022961 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 16022911
Score = 400 bits (202), Expect = e-109
Identities = 208/210 (99%)
Strand = Plus / Minus
Query: 909 cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacatcct 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16021644 cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacaccct 16021585
Query: 969 gacctttttcctgggacggcgtttggggaggctttttggctacactgagagggacctcga 1028
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16021584 gacctttttcctgggacggcgtttgggaaggctttttggctacactgagagggacctcga 16021525
Query: 1029 gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16021524 gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 16021465
Query: 1089 catccagagcaccaagccggacaccgtggg 1118
||||||||||||||||||||||||||||||
Sbjct: 16021464 catccagagcaccaagccggacaccgtggg 16021435
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 185 gagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggttcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032197 gagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggttcg 16032138
Query: 245 tctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggatcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032137 tctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggatcaa 16032078
Query: 305 ggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacgagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032077 ggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacgagg 16032018
Query: 365 agatcaacg 373
|||||||||
Sbjct: 16032017 agatcaacg 16032009
Score = 361 bits (182), Expect = 7e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 373 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029503 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 16029444
Query: 433 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029443 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 16029384
Query: 493 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029383 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 16029324
Query: 553 gg 554
||
Sbjct: 16029323 gg 16029322
Score = 359 bits (181), Expect = 3e-96
Identities = 184/185 (99%)
Strand = Plus / Minus
Query: 1 gtgaggagagccgcccgggtcgctcaggtaacaggggcggagcgggcctgactctgcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16054308 gtgaggagagccgcccgggtcgctcaggtaacaggggcggagcgggcctgactctgcgtc 16054249
Query: 61 gcccctctgggaggccgagccctggcggggtccgagaaggacgcgcggatcgggagccag 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 16054248 gcccctctgggaggccgagcccgggcggggtccgagaaggacgcgcggatcgggagccag 16054189
Query: 121 gagccggagccgcagggaccgtgcgcctgctgccgccgagcctgggaccagggagccgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16054188 gagccggagccgcagggaccgtgcgcctgctgccgccgagcctgggaccagggagccgac 16054129
Query: 181 gaccg 185
|||||
Sbjct: 16054128 gaccg 16054124
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1225 aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16018042 aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 16017983
Query: 1285 atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017982 atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 16017923
Query: 1345 catgaggcg 1353
|||||||||
Sbjct: 16017922 catgaggcg 16017914
Score = 238 bits (120), Expect = 7e-60
Identities = 129/132 (97%)
Strand = Plus / Minus
Query: 780 aggcttcaactcagtggccactgccaggatcttttacaagctgatgctgcggctgggctt 839
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022289 aggcttcaactcagtggctgctgccaggatcttttacaagctgatgctgcggctgggctt 16022230
Query: 840 ccaggaattctaccttcaaggcggagactggggggccctgatctgcaccaacatggccca 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16022229 ccaggaattctaccttcaaggcggagactgggggtccctgatctgcaccaacatggccca 16022170
Query: 900 gctggtgcccag 911
||||||||||||
Sbjct: 16022169 gctggtgcccag 16022158
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1117 ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019440 ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 16019381
Query: 1177 acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019380 acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 16019330
Score = 198 bits (100), Expect = 6e-48
Identities = 113/116 (97%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 1353 gatcaaggtccacgtgcccaccggctttgctgccttcccttc-gaggtgttacactgccc 1411
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16017065 gatcaaggtccacgtgcccaccggctttgctgccttcccttccgaggtgttacactgccc 16017006
Query: 1412 aaaaaagtgggtgaagaaccagtacccaaaactcatctcctattcctacatggccc 1467
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16017005 agaaaagtgggtgaagaacaagtacccaaaactcatctcctattcctacatggccc 16016950
>gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591
Length = 183348
Score = 113 bits (57), Expect = 3e-22
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 1371 caccggctttgctgccttcccttc-gaggtgttacactgcccaaaaaagtgggtgaagaa 1429
|||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 101897 caccggctttgctgccttcccttcagaggtgttacactgccctgaacagtgggtgaagaa 101838
Query: 1430 ccagtacccaaaactcatctc 1450
| |||||||||||||||||||
Sbjct: 101837 caagtacccaaaactcatctc 101817
>Sscrofa_Chr12
|| Length = 63588571
Score = 63.9 bits (32), Expect = 2e-07
Identities = 116/144 (80%)
Strand = Plus / Plus
Query: 1202 acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1261
||||||||||| | | |||||| || |||| ||||||||| | |||| || | || ||
Sbjct: 29973670 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 29973729
Query: 1262 tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1321
| |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 29973730 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 29973789
Query: 1322 gacagggcgtgatggccaataagc 1345
| |||||| | |||||||||||||
Sbjct: 29973790 ggcagggcataatggccaataagc 29973813
Score = 63.9 bits (32), Expect = 2e-07
Identities = 116/144 (80%)
Strand = Plus / Plus
Query: 1202 acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1261
||||||||||| | | |||||| || |||| ||||||||| | |||| || | || ||
Sbjct: 30105437 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 30105496
Query: 1262 tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1321
| |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 30105497 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 30105556
Query: 1322 gacagggcgtgatggccaataagc 1345
| |||||| | |||||||||||||
Sbjct: 30105557 ggcagggcataatggccaataagc 30105580
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,771,977
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 12
Length of query: 1498
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1477
Effective length of database: 2,808,413,156
Effective search space: 4148026231412
Effective search space used: 4148026231412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)