Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776519.2| inhibin alpha chain precursor [Bos taurus]. 509 e-144
Alignment gi|XP_002688571.1| PREDICTED: growth differentiation factor 1-l... 54 3e-07
Alignment gi|XP_585368.1| PREDICTED: growth differentiation factor 1-like... 54 3e-07
Alignment gi|NP_001179197.1| bone morphogenetic protein 3 [Bos taurus]. 54 4e-07
Alignment gi|NP_001179047.1| bone morphogenetic protein 10 [Bos taurus]. 54 4e-07
Alignment gi|XP_002691483.1| PREDICTED: bone morphogenetic protein 10 [Bo... 54 4e-07
Alignment gi|XP_002688428.1| PREDICTED: bone morphogenetic protein 3 [Bos... 54 4e-07
Alignment gi|XP_002697666.1| PREDICTED: bone morphogenetic protein 6-like... 53 8e-07
Alignment gi|XP_874937.3| PREDICTED: bone morphogenetic protein 6-like [B... 53 8e-07
Alignment gi|NP_001192771.1| inhibin beta E chain [Bos taurus]. 52 1e-06
>ref|NP_776519.2| inhibin alpha chain precursor [Bos taurus].
Length = 360
Score = 509 bits (1310), Expect = e-144
Identities = 258/364 (70%), Positives = 268/364 (73%)
Frame = +3
Query: 138 MWPQXXXXXXAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 317
MW Q AP+ GHGC G ELDRELVLAKVRALFLDALG P VTGEGGDPGVRRL RR
Sbjct: 1 MWLQLLLLLLAPQGGHGCHGLELDRELVLAKVRALFLDALGHPPVTGEGGDPGVRRLHRR 60
Query: 318 HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTR 497
HAVGGFMRRGSEPE++DVSQAILFPA GA CGDEP FTYVF+PSQHTR
Sbjct: 61 HAVGGFMRRGSEPEDQDVSQAILFPAAGASCGDEPDAGEAEEGL----FTYVFQPSQHTR 116
Query: 498 SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 677
SRQVTSAQLWFHTGLDRQ AAANSS PLL LL L+S GP+ VPMSLGQAPPRWAVLHLA
Sbjct: 117 SRQVTSAQLWFHTGLDRQETAAANSSEPLLGLLVLTSGGPMPVPMSLGQAPPRWAVLHLA 176
Query: 678 ASAXXXXXXXXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXX 857
SA RPEATPFLVAHTRA+PPSGGERARRST
Sbjct: 177 TSAFPLLTHPVLALLLRCPLCSCSTRPEATPFLVAHTRAKPPSGGERARRSTPPLPWPWS 236
Query: 858 XXXXXXXQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 1037
QRPPEEPA HADCHRA+LNISFQELGWDRWIVHPPSFIF+YCHGGCGL +
Sbjct: 237 PAALRLLQRPPEEPAAHADCHRAALNISFQELGWDRWIVHPPSFIFYYCHGGCGLSPPQD 296
Query: 1038 LPLSVPGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQH 1217
LPL VPG GAQPCCAALPGTMR L VRTTSDGGYSFKYE V NLLTQH
Sbjct: 297 LPLPVPGVPPTPVQPLSLVPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYEMVPNLLTQH 356
Query: 1218 CACI 1229
CACI
Sbjct: 357 CACI 360
>ref|XP_002688571.1| PREDICTED: growth differentiation factor 1-like [Bos taurus].
Length = 369
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Frame = +3
Query: 885 PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVP--- 1055
PP C L +SF+E+GW RW++ P F+ +YC G C LP + + P P
Sbjct: 254 PPVGGGSGGSCRARRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAVLSEPGGTPALN 313
Query: 1056 -GAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
PCC + S+ SD YE +++ C C
Sbjct: 314 HAVLRTLMHAAAPGAAGLPCCVPARLSPISVLFFDNSDNVVLRHYE---DMVVDECGC 368
>ref|XP_585368.1| PREDICTED: growth differentiation factor 1-like [Bos taurus].
Length = 369
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Frame = +3
Query: 885 PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVP--- 1055
PP C L +SF+E+GW RW++ P F+ +YC G C LP + + P P
Sbjct: 254 PPVGGGSGGSCRARRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAVLSEPGGTPALN 313
Query: 1056 -GAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
PCC + S+ SD YE +++ C C
Sbjct: 314 HAVLRTLMHAAAPGAAGLPCCVPARLSPISVLFFDNSDNVVLRHYE---DMVVDECGC 368
>ref|NP_001179197.1| bone morphogenetic protein 3 [Bos taurus].
Length = 475
Score = 53.5 bits (127), Expect = 4e-07
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF +YC G C P +L S
Sbjct: 372 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ + CAC
Sbjct: 432 VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474
>ref|NP_001179047.1| bone morphogenetic protein 10 [Bos taurus].
Length = 424
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 323 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 383 KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423
>ref|XP_002691483.1| PREDICTED: bone morphogenetic protein 10 [Bos taurus].
Length = 424
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 323 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 383 KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423
>ref|XP_002688428.1| PREDICTED: bone morphogenetic protein 3 [Bos taurus].
Length = 475
Score = 53.5 bits (127), Expect = 4e-07
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF +YC G C P +L S
Sbjct: 372 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ + CAC
Sbjct: 432 VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474
>ref|XP_002697666.1| PREDICTED: bone morphogenetic protein 6-like [Bos taurus].
Length = 496
Score = 52.8 bits (125), Expect = 8e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 395 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 454
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 455 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 495
>ref|XP_874937.3| PREDICTED: bone morphogenetic protein 6-like [Bos taurus].
Length = 496
Score = 52.8 bits (125), Expect = 8e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 395 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 454
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 455 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 495
>ref|NP_001192771.1| inhibin beta E chain [Bos taurus].
Length = 348
Score = 52.0 bits (123), Expect = 1e-06
Identities = 46/158 (29%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
Frame = +3
Query: 759 EATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNI 938
E PFL TR + P G RARR T P EPA C R +
Sbjct: 212 EQRPFLELKTRPKLPGAG-RARRRT-----------------PSCEPATPLCCRRDHY-V 252
Query: 939 SFQELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPC 1112
FQELGW WI+ P + +YC G C L P + S A C
Sbjct: 253 DFQELGWRDWILQPEGYRLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPLGTSC 312
Query: 1113 CAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
C +P R L + G K + V +++ + C C
Sbjct: 313 C--VPTARRPLSLLYLDRDGNVVKTD-VPDMVVEACGC 347
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,617,908
Number of extensions: 2115486
Number of successful extensions: 15232
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 14736
Number of HSP's successfully gapped: 24
Length of query: 470
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,174,046
Effective search space: 5159352744
Effective search space used: 5159352744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545660.1| PREDICTED: similar to Inhibin alpha chain precu... 494 e-140
Alignment gi|XP_544948.2| PREDICTED: similar to Bone morphogenetic protei... 54 5e-07
Alignment gi|XP_534896.1| PREDICTED: similar to growth differentiation fa... 54 5e-07
Alignment gi|XP_538528.2| PREDICTED: similar to Bone morphogenetic protei... 53 6e-07
Alignment gi|XP_866377.1| PREDICTED: similar to Bone morphogenetic protei... 53 6e-07
Alignment gi|XP_535880.2| PREDICTED: similar to bone morphogenetic protei... 53 8e-07
Alignment gi|XP_866502.1| PREDICTED: similar to Bone morphogenetic protei... 53 8e-07
Alignment gi|XP_866490.1| PREDICTED: similar to Bone morphogenetic protei... 53 8e-07
Alignment gi|XP_547817.2| PREDICTED: similar to Bone morphogenetic protei... 52 1e-06
Alignment gi|XP_864214.1| PREDICTED: similar to Bone morphogenetic protei... 52 1e-06
>ref|XP_545660.1| PREDICTED: similar to Inhibin alpha chain precursor [Canis
familiaris].
Length = 368
Score = 494 bits (1272), Expect = e-140
Identities = 251/355 (70%), Positives = 258/355 (72%), Gaps = 1/355 (0%)
Frame = +3
Query: 168 APRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRG 347
+P SGHGC GPELDR LVLAKVRALF+DALG PAV GEGGDPGVRRLPRRHA GGF RRG
Sbjct: 14 SPDSGHGCHGPELDRALVLAKVRALFMDALGSPAVAGEGGDPGVRRLPRRHAPGGFRRRG 73
Query: 348 SEP-EEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQL 524
EP EEEDVSQAILFPATGA C DEP FTYVFRPSQH RSRQVTSA L
Sbjct: 74 WEPREEEDVSQAILFPATGASCADEPAARELTQKAEDGLFTYVFRPSQHMRSRQVTSAHL 133
Query: 525 WFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXX 704
WFHTGLDR AA+NSSGPLL LL SS P+AVP S+GQAPPRWAVLHLA SA
Sbjct: 134 WFHTGLDRHSTAASNSSGPLLSLLVPSSGVPMAVPTSVGQAPPRWAVLHLAPSALPLLTS 193
Query: 705 XXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQR 884
A PEATPFLVAHTRARPPSGGER RRS QR
Sbjct: 194 PVLVLLLRCPVCSCAAGPEATPFLVAHTRARPPSGGERTRRSASPLPWPWSPAALRLLQR 253
Query: 885 PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAX 1064
PEEPA HADCHRA+LNISFQELGWD WIVHPPSFIFHYCHGGCGLP P+LPL GA
Sbjct: 254 SPEEPAAHADCHRAALNISFQELGWDHWIVHPPSFIFHYCHGGCGLPAPPDLPLPGSGAP 313
Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
GAQPCCAALPGTMR LRVRTTSDGGYSFKYETV NLLTQHCACI
Sbjct: 314 PTPVQPLSLVPGAQPCCAALPGTMRPLRVRTTSDGGYSFKYETVPNLLTQHCACI 368
>ref|XP_544948.2| PREDICTED: similar to Bone morphogenetic protein 3 precursor (BMP-3)
(Osteogenin) (BMP-3A) [Canis familiaris].
Length = 573
Score = 53.5 bits (127), Expect = 5e-07
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF +YC G C P +L S
Sbjct: 470 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 529
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ + CAC
Sbjct: 530 VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 572
>ref|XP_534896.1| PREDICTED: similar to growth differentiation factor 3 precursor
[Canis familiaris].
Length = 365
Score = 53.5 bits (127), Expect = 5e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
CHR L I+FQ+LGW +WI+ P F+ +YCHG C
Sbjct: 265 CHRHQLFINFQDLGWHKWIIAPKGFMANYCHGDC 298
>ref|XP_538528.2| PREDICTED: similar to Bone morphogenetic protein 10 precursor
(BMP-10) isoform 1 [Canis familiaris].
Length = 424
Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 323 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 383 KASKVCC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423
>ref|XP_866377.1| PREDICTED: similar to Bone morphogenetic protein 10 precursor
(BMP-10) isoform 2 [Canis familiaris].
Length = 422
Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 321 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 380
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 381 KASKVCC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 421
>ref|XP_535880.2| PREDICTED: similar to bone morphogenetic protein 6 [Canis
familiaris].
Length = 720
Score = 52.8 bits (125), Expect = 8e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 619 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 678
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 679 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 719
>ref|XP_866502.1| PREDICTED: similar to Bone morphogenetic protein 5 precursor (BMP-5)
isoform 4 [Canis familiaris].
Length = 419
Score = 52.8 bits (125), Expect = 8e-07
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 888 PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
PE+ C + L +SF++LGW WI+ P + YC G C P ++ +
Sbjct: 309 PEQDEQKQACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQ 368
Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 369 TLVHLMFPDHVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 418
>ref|XP_866490.1| PREDICTED: similar to Bone morphogenetic protein 5 precursor (BMP-5)
isoform 3 [Canis familiaris].
Length = 416
Score = 52.8 bits (125), Expect = 8e-07
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 888 PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
PE+ C + L +SF++LGW WI+ P + YC G C P ++ +
Sbjct: 306 PEQDEQKQACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQ 365
Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 366 TLVHLMFPDHVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 415
>ref|XP_547817.2| PREDICTED: similar to Bone morphogenetic protein 4 precursor (BMP-4)
(BMP-2B) isoform 1 [Canis familiaris].
Length = 409
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 879 QRPPEEPAVHA--------DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLP 1034
QR P HA +C R SL + F ++GW+ WIV PP + YCHG C P
Sbjct: 289 QRAKRSPKHHAQRARKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLAD 348
Query: 1035 NL 1040
+L
Sbjct: 349 HL 350
>ref|XP_864214.1| PREDICTED: similar to Bone morphogenetic protein 4 precursor (BMP-4)
(BMP-2B) isoform 7 [Canis familiaris].
Length = 409
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 879 QRPPEEPAVHA--------DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLP 1034
QR P HA +C R SL + F ++GW+ WIV PP + YCHG C P
Sbjct: 289 QRAKRSPKHHAQRARKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLAD 348
Query: 1035 NL 1040
+L
Sbjct: 349 HL 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,086,053
Number of extensions: 2156851
Number of successful extensions: 15989
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 15516
Number of HSP's successfully gapped: 21
Length of query: 470
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 364
Effective length of database: 15,340,888
Effective search space: 5584083232
Effective search space used: 5584083232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002182.1| inhibin alpha chain preproprotein [Homo sapiens]. 494 e-140
Alignment gi|NP_055297.1| bone morphogenetic protein 10 preproprotein [Ho... 54 5e-07
Alignment gi|NP_001192.2| bone morphogenetic protein 3 preproprotein [Hom... 54 5e-07
Alignment gi|NP_113667.1| inhibin beta E chain precursor [Homo sapiens]. 53 6e-07
Alignment gi|NP_001709.1| bone morphogenetic protein 6 preproprotein [Hom... 53 8e-07
Alignment gi|NP_065685.1| growth/differentiation factor 3 precursor [Homo... 52 2e-06
Alignment gi|NP_570912.2| bone morphogenetic protein 4 preproprotein [Hom... 51 3e-06
Alignment gi|NP_570911.2| bone morphogenetic protein 4 preproprotein [Hom... 51 3e-06
Alignment gi|NP_001193.2| bone morphogenetic protein 4 preproprotein [Hom... 51 3e-06
Alignment gi|NP_004953.1| bone morphogenetic protein 3B precursor [Homo s... 51 3e-06
>ref|NP_002182.1| inhibin alpha chain preproprotein [Homo sapiens].
Length = 366
Score = 494 bits (1273), Expect = e-140
Identities = 252/354 (71%), Positives = 261/354 (73%), Gaps = 1/354 (0%)
Frame = +3
Query: 171 PRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRGS 350
P+ GH CQG EL RELVLAKVRALFLDALGPPAVT EGGDPGVRRLPRRHA+GGF RGS
Sbjct: 13 PQGGHSCQGLELARELVLAKVRALFLDALGPPAVTREGGDPGVRRLPRRHALGGFTHRGS 72
Query: 351 EPEEE-DVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQLW 527
EPEEE DVSQAILFPAT A C D+ F Y+FRPSQHTRSRQVTSAQLW
Sbjct: 73 EPEEEEDVSQAILFPATDASCEDKSAARGLAQEAEEGLFRYMFRPSQHTRSRQVTSAQLW 132
Query: 528 FHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXXX 707
FHTGLDRQG AA+NSS PLL LLALS GPVAVPMSLG APP WAVLHLA SA
Sbjct: 133 FHTGLDRQGTAASNSSEPLLGLLALSPGGPVAVPMSLGHAPPHWAVLHLATSALSLLTHP 192
Query: 708 XXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRP 887
ARPEATPFLVAHTR RPPSGGERARRST QRP
Sbjct: 193 VLVLLLRCPLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWPWSPSALRLLQRP 252
Query: 888 PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
PEEPA HA+CHR +LNISFQELGW+RWIV+PPSFIFHYCHGGCGL PNL L VPGA
Sbjct: 253 PEEPAAHANCHRVALNISFQELGWERWIVYPPSFIFHYCHGGCGLHIPPNLSLPVPGAPP 312
Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
GAQPCCAALPGTMR L VRTTSDGGYSFKYETV NLLTQHCACI
Sbjct: 313 TPAQPYSLLPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYETVPNLLTQHCACI 366
>ref|NP_055297.1| bone morphogenetic protein 10 preproprotein [Homo sapiens].
Length = 424
Score = 53.5 bits (127), Expect = 5e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 323 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 383 KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423
>ref|NP_001192.2| bone morphogenetic protein 3 preproprotein [Homo sapiens].
Length = 472
Score = 53.5 bits (127), Expect = 5e-07
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF +YC G C P +L S
Sbjct: 369 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 428
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ + CAC
Sbjct: 429 VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 471
>ref|NP_113667.1| inhibin beta E chain precursor [Homo sapiens].
Length = 350
Score = 53.1 bits (126), Expect = 6e-07
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 2/155 (1%)
Frame = +3
Query: 768 PFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNISFQ 947
PFL RA P G RARR T P EPA C R + FQ
Sbjct: 217 PFLELKIRANEPGAG-RARRRT-----------------PTCEPATPLCCRRDHY-VDFQ 257
Query: 948 ELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPCCAA 1121
ELGW WI+ P + +YC G C L P + S A + CC
Sbjct: 258 ELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPASTSCC-- 315
Query: 1122 LPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+P R L + G K + V +++ + C C
Sbjct: 316 VPTARRPLSLLYLDHNGNVVKTD-VPDMVVEACGC 349
>ref|NP_001709.1| bone morphogenetic protein 6 preproprotein [Homo sapiens].
Length = 513
Score = 52.8 bits (125), Expect = 8e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 412 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 471
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 472 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 512
>ref|NP_065685.1| growth/differentiation factor 3 precursor [Homo sapiens].
Length = 364
Score = 51.6 bits (122), Expect = 2e-06
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
CHR L I+F++LGW +WI+ P F+ +YCHG C
Sbjct: 264 CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGEC 297
>ref|NP_570912.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
Length = 408
Score = 50.8 bits (120), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
+C R SL + F ++GW+ WIV PP + YCHG C P +L
Sbjct: 307 NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349
>ref|NP_570911.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
Length = 408
Score = 50.8 bits (120), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
+C R SL + F ++GW+ WIV PP + YCHG C P +L
Sbjct: 307 NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349
>ref|NP_001193.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
Length = 408
Score = 50.8 bits (120), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
+C R SL + F ++GW+ WIV PP + YCHG C P +L
Sbjct: 307 NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349
>ref|NP_004953.1| bone morphogenetic protein 3B precursor [Homo sapiens].
Length = 478
Score = 50.8 bits (120), Expect = 3e-06
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +3
Query: 891 EEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSVPGAX 1064
+EP V C R L + F ++GW+ WI+ P SF +YC G C P +P + P +
Sbjct: 371 DEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFP-MPKIVRPSNHATIQ 426
Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCC +P M SL V D + + N+ CAC
Sbjct: 427 SIVRAVGIIPGIPEPCC--VPDKMNSLGV-LFLDENRNVVLKVYPNMSVDTCAC 477
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,520,522
Number of extensions: 2083720
Number of successful extensions: 14786
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 14208
Number of HSP's successfully gapped: 13
Length of query: 470
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,802,980
Effective search space: 5388284720
Effective search space used: 5388284720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034694.3| inhibin alpha chain precursor [Mus musculus]. 488 e-138
Alignment gi|NP_032134.2| growth/differentiation factor 3 precursor [Mus ... 53 7e-07
Alignment gi|NP_031582.1| bone morphogenetic protein 6 precursor [Mus mus... 52 9e-07
Alignment gi|NP_775580.1| bone morphogenetic protein 3 precursor [Mus mus... 52 1e-06
Alignment gi|NP_665684.2| bone morphogenetic protein 3B precursor [Mus mu... 52 1e-06
Alignment gi|NP_033886.2| bone morphogenetic protein 10 preproprotein [Mu... 52 1e-06
Alignment gi|NP_032408.2| inhibin beta E chain precursor [Mus musculus]. 52 1e-06
Alignment gi|NP_031580.2| bone morphogenetic protein 4 precursor [Mus mus... 51 2e-06
Alignment gi|NP_031581.2| bone morphogenetic protein 5 [Mus musculus]. 50 3e-06
Alignment gi|NP_031583.2| bone morphogenetic protein 7 precursor [Mus mus... 50 3e-06
>ref|NP_034694.3| inhibin alpha chain precursor [Mus musculus].
Length = 366
Score = 488 bits (1257), Expect = e-138
Identities = 246/352 (69%), Positives = 259/352 (73%)
Frame = +3
Query: 174 RSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRGSE 353
R CQGPEL RELVLAKV+ALFLDALGPPA+ GEGGDPG+RRLPRRHAVGGFM R SE
Sbjct: 16 RDVDSCQGPELVRELVLAKVKALFLDALGPPAMDGEGGDPGIRRLPRRHAVGGFMHRTSE 75
Query: 354 PEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQLWFH 533
PEEEDVSQAILFPATGA C D+P FTYVFRPSQH RS QVTSAQLWFH
Sbjct: 76 PEEEDVSQAILFPATGATCEDQPAARGLAQEAEEGLFTYVFRPSQHIRSHQVTSAQLWFH 135
Query: 534 TGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXXXXX 713
TGL R+ AAANSS PLLDLL LSS GP+AVP+SLGQ PPRWAVLHLAASA
Sbjct: 136 TGLGRKSTAAANSSAPLLDLLVLSSGGPMAVPVSLGQGPPRWAVLHLAASAFPLLTHPIL 195
Query: 714 XXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPE 893
RPE TPFLVAHTRAR PS GERARRST QRPPE
Sbjct: 196 VLLLRCPLCSCSGRPETTPFLVAHTRARAPSAGERARRSTPSVPWPWSPAALRLLQRPPE 255
Query: 894 EPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXX 1073
EPA HA CHRA+LNISFQELGWDRWIVHPPSFIFHYCHG CG+PT +LPL VPG
Sbjct: 256 EPAAHAFCHRAALNISFQELGWDRWIVHPPSFIFHYCHGSCGMPT-SDLPLPVPGVPPTP 314
Query: 1074 XXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
GA+PCCAALPG+MRSLRVRTTSDGGYSFKYE V NL+TQHCACI
Sbjct: 315 VQPLFLVPGAKPCCAALPGSMRSLRVRTTSDGGYSFKYEMVPNLITQHCACI 366
>ref|NP_032134.2| growth/differentiation factor 3 precursor [Mus musculus].
Length = 366
Score = 52.8 bits (125), Expect = 7e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
CHR L I+FQ+LGW +W++ P F+ +YCHG C
Sbjct: 266 CHRHQLFINFQDLGWHKWVIAPKGFMANYCHGEC 299
>ref|NP_031582.1| bone morphogenetic protein 6 precursor [Mus musculus].
Length = 510
Score = 52.4 bits (124), Expect = 9e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 409 CKKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 468
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 469 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 509
>ref|NP_775580.1| bone morphogenetic protein 3 precursor [Mus musculus].
Length = 468
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF YC G C P +L S
Sbjct: 365 NCARRYLKVDFADIGWSEWIISPKSFDAFYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 424
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ CAC
Sbjct: 425 VSGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVDSCAC 467
>ref|NP_665684.2| bone morphogenetic protein 3B precursor [Mus musculus].
Length = 476
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 879 QRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSV 1052
+R +EP V C R L + F ++GW+ WI+ P SF +YC G C P +P + P +
Sbjct: 365 RRQWDEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFP-MPKIVRPSNH 420
Query: 1053 PGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCC +P M SL V D + + N+ + CAC
Sbjct: 421 ATIQSIVRAVGIVPGIPEPCC--VPDKMNSLGV-LFLDENRNAVLKVYPNMSVETCAC 475
>ref|NP_033886.2| bone morphogenetic protein 10 preproprotein [Mus musculus].
Length = 421
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 320 CKKTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 379
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 380 KASKACC--VPTKLDPISILYLDKGVVTYKFKYE---GMAVSECGC 420
>ref|NP_032408.2| inhibin beta E chain precursor [Mus musculus].
Length = 350
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/155 (28%), Positives = 56/155 (36%), Gaps = 2/155 (1%)
Frame = +3
Query: 768 PFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNISFQ 947
PFL RA P G RARR T PE P C R + FQ
Sbjct: 217 PFLELKIRANEPGAG-RARRRTPTCE--------------PETPL----CCRRDHYVDFQ 257
Query: 948 ELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPCCAA 1121
ELGW WI+ P + +YC G C L P + S A CC
Sbjct: 258 ELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPAGSSCC-- 315
Query: 1122 LPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+P R L + G K + V +++ + C C
Sbjct: 316 VPTARRPLSLLYLDHNGNVVKTD-VPDMVVEACGC 349
>ref|NP_031580.2| bone morphogenetic protein 4 precursor [Mus musculus].
Length = 408
Score = 51.2 bits (121), Expect = 2e-06
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 885 PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
P + +C R SL + F ++GW+ WIV PP + YCHG C P +L
Sbjct: 298 PQRSRKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349
>ref|NP_031581.2| bone morphogenetic protein 5 [Mus musculus].
Length = 454
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/104 (25%), Positives = 44/104 (42%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SF++LGW WI+ P + YC G C P ++ +
Sbjct: 353 CKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQTLVHLMFPD 412
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 413 HVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 453
>ref|NP_031583.2| bone morphogenetic protein 7 precursor [Mus musculus].
Length = 430
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/104 (25%), Positives = 44/104 (42%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SF++LGW WI+ P + +YC G C P + +
Sbjct: 329 CKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPD 388
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 389 TVPKPCCA--PTQLNAISVLYFDDSS-NVILKKYRNMVVRACGC 429
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,076,872
Number of extensions: 1695862
Number of successful extensions: 11522
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 11039
Number of HSP's successfully gapped: 14
Length of query: 470
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 365
Effective length of database: 12,463,779
Effective search space: 4549279335
Effective search space used: 4549279335
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999354.1| inhibin alpha chain precursor [Sus scrofa]. 592 e-169
Alignment gi|XP_003125118.1| PREDICTED: bone morphogenetic protein 10 [Su... 54 3e-07
Alignment gi|NP_001193317.1| bone morphogenetic protein 3 [Sus scrofa]. 54 3e-07
Alignment gi|XP_003126368.1| PREDICTED: inhibin beta E chain-like [Sus sc... 53 4e-07
Alignment gi|XP_003128222.2| PREDICTED: bone morphogenetic protein 6-like... 53 5e-07
Alignment gi|NP_001161473.1| bone morphogenetic protein 6 [Sus scrofa]. 53 5e-07
Alignment gi|XP_003133153.1| PREDICTED: bone morphogenetic protein 3B-lik... 52 8e-07
Alignment gi|XP_003355631.1| PREDICTED: growth/differentiation factor 3-l... 52 8e-07
Alignment gi|XP_003126560.1| PREDICTED: growth/differentiation factor 3-l... 52 8e-07
Alignment gi|XP_003123591.1| PREDICTED: embryonic growth/differentiation ... 52 8e-07
>ref|NP_999354.1| inhibin alpha chain precursor [Sus scrofa].
Length = 364
Score = 592 bits (1527), Expect = e-169
Identities = 295/364 (81%), Positives = 295/364 (81%)
Frame = +3
Query: 138 MWPQXXXXXXAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 317
MWPQ APRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR
Sbjct: 1 MWPQLLLLLLAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 60
Query: 318 HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTR 497
HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEP FTYVFRPSQHT
Sbjct: 61 HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPAAGELAREAEEGLFTYVFRPSQHTH 120
Query: 498 SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 677
SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA
Sbjct: 121 SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 180
Query: 678 ASAXXXXXXXXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXX 857
ASA ARPEATPFLVAHTRARPPSGGERARRST
Sbjct: 181 ASALPLLTHPVLVLLLRCPLCSCSARPEATPFLVAHTRARPPSGGERARRSTAPLPWPWS 240
Query: 858 XXXXXXXQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 1037
QRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN
Sbjct: 241 PAALRLLQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 300
Query: 1038 LPLSVPGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQH 1217
LPLSVPGA GAQPCCAALPGTMRSLRVRTTSDGGYSFKYETV NLLTQH
Sbjct: 301 LPLSVPGAPPTPVQPLLLVPGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVPNLLTQH 360
Query: 1218 CACI 1229
CACI
Sbjct: 361 CACI 364
>ref|XP_003125118.1| PREDICTED: bone morphogenetic protein 10 [Sus scrofa].
Length = 423
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C R L I F+E+GWD WI+ PP + + C G C P +L +
Sbjct: 322 CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 381
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
++ CC +P + + + G Y FKYE + C C
Sbjct: 382 KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 422
>ref|NP_001193317.1| bone morphogenetic protein 3 [Sus scrofa].
Length = 475
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 912 DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
+C R L + F ++GW WI+ P SF +YC G C P +L S
Sbjct: 372 NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431
Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
G +PCC +P M SL + D + + N+ + CAC
Sbjct: 432 VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474
>ref|XP_003126368.1| PREDICTED: inhibin beta E chain-like [Sus scrofa].
Length = 351
Score = 53.1 bits (126), Expect = 4e-07
Identities = 46/158 (29%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
Frame = +3
Query: 759 EATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNI 938
E PFL TR + P G RARR T PE P C R +
Sbjct: 215 EQRPFLELKTRPKEPGAG-RARRRTPTCE--------------PETPL----CCRRDHYV 255
Query: 939 SFQELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPC 1112
FQELGW WI+ P + +YC G C L P + S A C
Sbjct: 256 DFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVLSLLKANNPWPLGTSC 315
Query: 1113 CAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
C +P RSL + G K + V +++ + C C
Sbjct: 316 C--VPTARRSLSLLYLDRDGNVVKTD-VPDMVVEACGC 350
>ref|XP_003128222.2| PREDICTED: bone morphogenetic protein 6-like, partial [Sus scrofa].
Length = 306
Score = 52.8 bits (125), Expect = 5e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 205 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 264
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 265 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 305
>ref|NP_001161473.1| bone morphogenetic protein 6 [Sus scrofa].
Length = 506
Score = 52.8 bits (125), Expect = 5e-07
Identities = 27/104 (25%), Positives = 45/104 (43%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
C + L +SFQ+LGW WI+ P + +YC G C P ++ +
Sbjct: 405 CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 464
Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCCA P + ++ V D + + RN++ + C C
Sbjct: 465 YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 505
>ref|XP_003133153.1| PREDICTED: bone morphogenetic protein 3B-like [Sus scrofa].
Length = 475
Score = 52.0 bits (123), Expect = 8e-07
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 891 EEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSVPGAX 1064
+EP V C R L + F ++GW+ WI+ P SF +YC G C P +P + P +
Sbjct: 368 DEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCSGACEFP-MPKIVRPSNHATIQ 423
Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
+PCC +P M SL V D + + N+ + CAC
Sbjct: 424 SIVRAVGIVPGIPEPCC--VPDKMNSLGV-LFLDENRNVVLKVYPNMSVETCAC 474
>ref|XP_003355631.1| PREDICTED: growth/differentiation factor 3-like [Sus scrofa].
Length = 273
Score = 52.0 bits (123), Expect = 8e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
CHR L I+F++LGW +WI+ P F+ +YCHG C
Sbjct: 173 CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGDC 206
>ref|XP_003126560.1| PREDICTED: growth/differentiation factor 3-like [Sus scrofa].
Length = 363
Score = 52.0 bits (123), Expect = 8e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 915 CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
CHR L I+F++LGW +WI+ P F+ +YCHG C
Sbjct: 263 CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGDC 296
>ref|XP_003123591.1| PREDICTED: embryonic growth/differentiation factor 1-like [Sus
scrofa].
Length = 276
Score = 52.0 bits (123), Expect = 8e-07
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 882 RPPEEPAVHAD----CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLS 1049
R EPAV C L +SF+E+GW RW++ P F+ +YC G C LP + P
Sbjct: 156 RREAEPAVGGGSGGACRTRRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAALSEPGG 215
Query: 1050 VP 1055
P
Sbjct: 216 TP 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,804,463
Number of extensions: 1402931
Number of successful extensions: 10213
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9876
Number of HSP's successfully gapped: 15
Length of query: 470
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 367
Effective length of database: 8,779,541
Effective search space: 3222091547
Effective search space used: 3222091547
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007098
(1412 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1164 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1164 bits (587), Expect = 0.0
Identities = 622/631 (98%), Gaps = 2/631 (0%)
Strand = Plus / Minus
Query: 397 caggtgcccgctgtggggacgagccagctgctggagagctggcccgggaggctgaggagg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134508306 caggtgcccgctgtggggacgagccagctgctggagagctggcccgggaggctgaggagg 134508247
Query: 457 gcctcttcacatatgtattccggccgtcccagcacacacgcagccgccaggtgacttcag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134508246 gcctcttcacatatgtattccggccgtcccagcacacacgcagccgccaggtgacttcag 134508187
Query: 517 ctcagctgtggttccacacgggactggacagacagggaatggcagccgccaatagctctg 576
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134508186 ctcagctgtggttccacacgggactggacagacaggggatggcagccgccaatagctctg 134508127
Query: 577 ggcccctgctggacctgttggcactgtcatccaggggtcctgtggctgtgcccatgtcac 636
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 134508126 ggcccctgctggacctgctggcactatcatccaggggtcctgtggctgtgcccatgtcac 134508067
Query: 637 taggccaggcaccccctcgctgggctgtgctgcacctggccgcctctgccctccctttgt 696
| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 134508066 tgggccaggcgccccctcgctgggctgtgctgcacctggccgcctctgcccttcccttgt 134508007
Query: 697 tgacccacccagtcctggtgctgctgctgcgctgtcctctctgttcctgctcag-cccgg 755
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 134508006 tga-ccacccagtcctggtgctgctgctgcgctgtcctctctgttcctgctcagccccgg 134507948
Query: 756 cccgaggccacccccttcctggtggcccacactcgggccaggccacccagcggaggggag 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507947 cccgaggccacccccttcctggtggcccacactcgggccaggccacccagcggaggggag 134507888
Query: 816 agggcccgacgctccaccgcccctctgccctggccttggtcccccgccgcgctgcgcctg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507887 agggcccgacgctccaccgcccctctgccctggccttggtcccccgccgcgctgcgcctg 134507828
Query: 876 ctgcagaggcccccggaggaacccgctgtgcacgccgactgccacagagcttccctcaac 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507827 ctgcagaggcccccggaggaacccgctgtgcacgccgactgccacagagcttccctcaac 134507768
Query: 936 atctccttccaggagctgggctgggaccggtggatcgtgcaccctcccagtttcatcttc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507767 atctccttccaggagctgggctgggaccggtggatcgtgcaccctcccagtttcatcttc 134507708
Query: 996 cactactgtcacgggggctgcgggctgccga 1026
|||||||||||||||||||||||||||||||
Sbjct: 134507707 cactactgtcacgggggctgcgggctgccga 134507677
Score = 791 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Minus
Query: 3 gaagactggggtgagaaaggtagaagagggcggctggtgggatggggaggggagattggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511417 gaagactggggtgagaaaggtagaagagggcggctggtgggatggggaggggagattggg 134511358
Query: 63 gaggccctgggcagaccctgacagaaggggcacagggctgggtgtgggttcaccgttggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511357 gaggccctgggcagaccctgacagaaggggcacagggctgggtgtgggttcaccgttggc 134511298
Query: 123 agggccaggtgagctatgtggcctcagctgctcctcttgctgttggccccacggagtggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511297 agggccaggtgagctatgtggcctcagctgctcctcttgctgttggccccacggagtggg 134511238
Query: 183 catggctgccagggcccggagctggaccgggagcttgtcctggccaaggtgagggctctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511237 catggctgccagggcccggagctggaccgggagcttgtcctggccaaggtgagggctctg 134511178
Query: 243 ttcctggatgccttgggacccccggcagtgactggggaaggtggggatcctggagtcagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511177 ttcctggatgccttgggacccccggcagtgactggggaaggtggggatcctggagtcagg 134511118
Query: 303 cgtctgccccgaagacatgctgtggggggcttcatgcgcaggggctctgagcccgaggag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511117 cgtctgccccgaagacatgctgtggggggcttcatgcgcaggggctctgagcccgaggag 134511058
Query: 363 gaggatgtctcccaggccatccttttcccggctacaggt 401
|||||||||||||||||||||||||||||||||||||||
Sbjct: 134511057 gaggatgtctcccaggccatccttttcccggctacaggt 134511019
Score = 369 bits (186), Expect = 3e-99
Identities = 198/202 (98%)
Strand = Plus / Minus
Query: 1087 tgttggtgccaggggctcagccctgctgcgctgctctcccggggaccatgaggtccctac 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507616 tgttggtgccaggggctcagccctgctgcgctgctctcccggggaccatgaggtccctac 134507557
Query: 1147 gcgttcgcaccacctcggatggaggttactctttcaagtacgagacggtgcgcaaccttc 1206
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 134507556 gcgttcgcaccacctcggatggaggttactctttcaagtacgagacagtgcccaaccttc 134507497
Query: 1207 tcacccagcactgtgcctgcatctaaaggtgtcccgctggtggccgagctcccacaggca 1266
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 134507496 tcacccagcactgtgcctgcatctaagggtgtcccgctggtggccaagctcccacaggca 134507437
Query: 1267 ccagcctggaggaaggcagagt 1288
||||||||||||||||||||||
Sbjct: 134507436 ccagcctggaggaaggcagagt 134507415
Score = 69.9 bits (35), Expect = 4e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 1353 atgggtaatgtgacaataaacagcatagtgcagat 1387
|||||||||||||||||||||||||||||||||||
Sbjct: 134507350 atgggtaatgtgacaataaacagcatagtgcagat 134507316
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,418,587
Number of extensions: 334
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 4
Length of query: 1412
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1391
Effective length of database: 2,808,413,156
Effective search space: 3906502699996
Effective search space used: 3906502699996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)