Animal-Genome cDNA 20110601C-007098


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776519.2| inhibin alpha chain precursor [Bos taurus].          509   e-144
Alignment   gi|XP_002688571.1| PREDICTED: growth differentiation factor 1-l...    54   3e-07
Alignment   gi|XP_585368.1| PREDICTED: growth differentiation factor 1-like...    54   3e-07
Alignment   gi|NP_001179197.1| bone morphogenetic protein 3 [Bos taurus].         54   4e-07
Alignment   gi|NP_001179047.1| bone morphogenetic protein 10 [Bos taurus].        54   4e-07
Alignment   gi|XP_002691483.1| PREDICTED: bone morphogenetic protein 10 [Bo...    54   4e-07
Alignment   gi|XP_002688428.1| PREDICTED: bone morphogenetic protein 3 [Bos...    54   4e-07
Alignment   gi|XP_002697666.1| PREDICTED: bone morphogenetic protein 6-like...    53   8e-07
Alignment   gi|XP_874937.3| PREDICTED: bone morphogenetic protein 6-like [B...    53   8e-07
Alignment   gi|NP_001192771.1| inhibin beta E chain [Bos taurus].                 52   1e-06

>ref|NP_776519.2| inhibin alpha chain precursor [Bos taurus].
          Length = 360

 Score =  509 bits (1310), Expect = e-144
 Identities = 258/364 (70%), Positives = 268/364 (73%)
 Frame = +3

Query: 138  MWPQXXXXXXAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 317
            MW Q      AP+ GHGC G ELDRELVLAKVRALFLDALG P VTGEGGDPGVRRL RR
Sbjct: 1    MWLQLLLLLLAPQGGHGCHGLELDRELVLAKVRALFLDALGHPPVTGEGGDPGVRRLHRR 60

Query: 318  HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTR 497
            HAVGGFMRRGSEPE++DVSQAILFPA GA CGDEP             FTYVF+PSQHTR
Sbjct: 61   HAVGGFMRRGSEPEDQDVSQAILFPAAGASCGDEPDAGEAEEGL----FTYVFQPSQHTR 116

Query: 498  SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 677
            SRQVTSAQLWFHTGLDRQ  AAANSS PLL LL L+S GP+ VPMSLGQAPPRWAVLHLA
Sbjct: 117  SRQVTSAQLWFHTGLDRQETAAANSSEPLLGLLVLTSGGPMPVPMSLGQAPPRWAVLHLA 176

Query: 678  ASAXXXXXXXXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXX 857
             SA                      RPEATPFLVAHTRA+PPSGGERARRST        
Sbjct: 177  TSAFPLLTHPVLALLLRCPLCSCSTRPEATPFLVAHTRAKPPSGGERARRSTPPLPWPWS 236

Query: 858  XXXXXXXQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 1037
                   QRPPEEPA HADCHRA+LNISFQELGWDRWIVHPPSFIF+YCHGGCGL    +
Sbjct: 237  PAALRLLQRPPEEPAAHADCHRAALNISFQELGWDRWIVHPPSFIFYYCHGGCGLSPPQD 296

Query: 1038 LPLSVPGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQH 1217
            LPL VPG             GAQPCCAALPGTMR L VRTTSDGGYSFKYE V NLLTQH
Sbjct: 297  LPLPVPGVPPTPVQPLSLVPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYEMVPNLLTQH 356

Query: 1218 CACI 1229
            CACI
Sbjct: 357  CACI 360


>ref|XP_002688571.1| PREDICTED: growth differentiation factor 1-like [Bos taurus].
          Length = 369

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
 Frame = +3

Query: 885  PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVP--- 1055
            PP        C    L +SF+E+GW RW++ P  F+ +YC G C LP + + P   P   
Sbjct: 254  PPVGGGSGGSCRARRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAVLSEPGGTPALN 313

Query: 1056 -GAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                              PCC     +  S+     SD      YE   +++   C C
Sbjct: 314  HAVLRTLMHAAAPGAAGLPCCVPARLSPISVLFFDNSDNVVLRHYE---DMVVDECGC 368


>ref|XP_585368.1| PREDICTED: growth differentiation factor 1-like [Bos taurus].
          Length = 369

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
 Frame = +3

Query: 885  PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVP--- 1055
            PP        C    L +SF+E+GW RW++ P  F+ +YC G C LP + + P   P   
Sbjct: 254  PPVGGGSGGSCRARRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAVLSEPGGTPALN 313

Query: 1056 -GAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                              PCC     +  S+     SD      YE   +++   C C
Sbjct: 314  HAVLRTLMHAAAPGAAGLPCCVPARLSPISVLFFDNSDNVVLRHYE---DMVVDECGC 368


>ref|NP_001179197.1| bone morphogenetic protein 3 [Bos taurus].
          Length = 475

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF  +YC G C  P   +L  S              
Sbjct: 372  NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+  + CAC
Sbjct: 432  VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474


>ref|NP_001179047.1| bone morphogenetic protein 10 [Bos taurus].
          Length = 424

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 323  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 383  KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423


>ref|XP_002691483.1| PREDICTED: bone morphogenetic protein 10 [Bos taurus].
          Length = 424

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 323  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 383  KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423


>ref|XP_002688428.1| PREDICTED: bone morphogenetic protein 3 [Bos taurus].
          Length = 475

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF  +YC G C  P   +L  S              
Sbjct: 372  NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+  + CAC
Sbjct: 432  VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474


>ref|XP_002697666.1| PREDICTED: bone morphogenetic protein 6-like [Bos taurus].
          Length = 496

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 395  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 454

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 455  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 495


>ref|XP_874937.3| PREDICTED: bone morphogenetic protein 6-like [Bos taurus].
          Length = 496

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 395  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 454

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 455  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 495


>ref|NP_001192771.1| inhibin beta E chain [Bos taurus].
          Length = 348

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 46/158 (29%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
 Frame = +3

Query: 759  EATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNI 938
            E  PFL   TR + P  G RARR T                 P  EPA    C R    +
Sbjct: 212  EQRPFLELKTRPKLPGAG-RARRRT-----------------PSCEPATPLCCRRDHY-V 252

Query: 939  SFQELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPC 1112
             FQELGW  WI+ P  +  +YC G C   L   P +  S   A                C
Sbjct: 253  DFQELGWRDWILQPEGYRLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPLGTSC 312

Query: 1113 CAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
            C  +P   R L +      G   K + V +++ + C C
Sbjct: 313  C--VPTARRPLSLLYLDRDGNVVKTD-VPDMVVEACGC 347


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,617,908
Number of extensions: 2115486
Number of successful extensions: 15232
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 14736
Number of HSP's successfully gapped: 24
Length of query: 470
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,174,046
Effective search space: 5159352744
Effective search space used: 5159352744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545660.1| PREDICTED: similar to Inhibin alpha chain precu...   494   e-140
Alignment   gi|XP_544948.2| PREDICTED: similar to Bone morphogenetic protei...    54   5e-07
Alignment   gi|XP_534896.1| PREDICTED: similar to growth differentiation fa...    54   5e-07
Alignment   gi|XP_538528.2| PREDICTED: similar to Bone morphogenetic protei...    53   6e-07
Alignment   gi|XP_866377.1| PREDICTED: similar to Bone morphogenetic protei...    53   6e-07
Alignment   gi|XP_535880.2| PREDICTED: similar to bone morphogenetic protei...    53   8e-07
Alignment   gi|XP_866502.1| PREDICTED: similar to Bone morphogenetic protei...    53   8e-07
Alignment   gi|XP_866490.1| PREDICTED: similar to Bone morphogenetic protei...    53   8e-07
Alignment   gi|XP_547817.2| PREDICTED: similar to Bone morphogenetic protei...    52   1e-06
Alignment   gi|XP_864214.1| PREDICTED: similar to Bone morphogenetic protei...    52   1e-06

>ref|XP_545660.1| PREDICTED: similar to Inhibin alpha chain precursor [Canis
            familiaris].
          Length = 368

 Score =  494 bits (1272), Expect = e-140
 Identities = 251/355 (70%), Positives = 258/355 (72%), Gaps = 1/355 (0%)
 Frame = +3

Query: 168  APRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRG 347
            +P SGHGC GPELDR LVLAKVRALF+DALG PAV GEGGDPGVRRLPRRHA GGF RRG
Sbjct: 14   SPDSGHGCHGPELDRALVLAKVRALFMDALGSPAVAGEGGDPGVRRLPRRHAPGGFRRRG 73

Query: 348  SEP-EEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQL 524
             EP EEEDVSQAILFPATGA C DEP             FTYVFRPSQH RSRQVTSA L
Sbjct: 74   WEPREEEDVSQAILFPATGASCADEPAARELTQKAEDGLFTYVFRPSQHMRSRQVTSAHL 133

Query: 525  WFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXX 704
            WFHTGLDR   AA+NSSGPLL LL  SS  P+AVP S+GQAPPRWAVLHLA SA      
Sbjct: 134  WFHTGLDRHSTAASNSSGPLLSLLVPSSGVPMAVPTSVGQAPPRWAVLHLAPSALPLLTS 193

Query: 705  XXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQR 884
                           A PEATPFLVAHTRARPPSGGER RRS                QR
Sbjct: 194  PVLVLLLRCPVCSCAAGPEATPFLVAHTRARPPSGGERTRRSASPLPWPWSPAALRLLQR 253

Query: 885  PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAX 1064
             PEEPA HADCHRA+LNISFQELGWD WIVHPPSFIFHYCHGGCGLP  P+LPL   GA 
Sbjct: 254  SPEEPAAHADCHRAALNISFQELGWDHWIVHPPSFIFHYCHGGCGLPAPPDLPLPGSGAP 313

Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
                       GAQPCCAALPGTMR LRVRTTSDGGYSFKYETV NLLTQHCACI
Sbjct: 314  PTPVQPLSLVPGAQPCCAALPGTMRPLRVRTTSDGGYSFKYETVPNLLTQHCACI 368


>ref|XP_544948.2| PREDICTED: similar to Bone morphogenetic protein 3 precursor (BMP-3)
            (Osteogenin) (BMP-3A) [Canis familiaris].
          Length = 573

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF  +YC G C  P   +L  S              
Sbjct: 470  NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 529

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+  + CAC
Sbjct: 530  VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 572


>ref|XP_534896.1| PREDICTED: similar to growth differentiation factor 3 precursor
            [Canis familiaris].
          Length = 365

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
            CHR  L I+FQ+LGW +WI+ P  F+ +YCHG C
Sbjct: 265  CHRHQLFINFQDLGWHKWIIAPKGFMANYCHGDC 298


>ref|XP_538528.2| PREDICTED: similar to Bone morphogenetic protein 10 precursor
            (BMP-10) isoform 1 [Canis familiaris].
          Length = 424

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 323  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 383  KASKVCC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423


>ref|XP_866377.1| PREDICTED: similar to Bone morphogenetic protein 10 precursor
            (BMP-10) isoform 2 [Canis familiaris].
          Length = 422

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 321  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 380

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 381  KASKVCC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 421


>ref|XP_535880.2| PREDICTED: similar to bone morphogenetic protein 6 [Canis
            familiaris].
          Length = 720

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 619  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 678

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 679  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 719


>ref|XP_866502.1| PREDICTED: similar to Bone morphogenetic protein 5 precursor (BMP-5)
            isoform 4 [Canis familiaris].
          Length = 419

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 28/113 (24%), Positives = 47/113 (41%)
 Frame = +3

Query: 888  PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
            PE+      C +  L +SF++LGW  WI+ P  +   YC G C  P   ++  +      
Sbjct: 309  PEQDEQKQACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQ 368

Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                        +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 369  TLVHLMFPDHVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 418


>ref|XP_866490.1| PREDICTED: similar to Bone morphogenetic protein 5 precursor (BMP-5)
            isoform 3 [Canis familiaris].
          Length = 416

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 28/113 (24%), Positives = 47/113 (41%)
 Frame = +3

Query: 888  PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
            PE+      C +  L +SF++LGW  WI+ P  +   YC G C  P   ++  +      
Sbjct: 306  PEQDEQKQACKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQ 365

Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                        +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 366  TLVHLMFPDHVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 415


>ref|XP_547817.2| PREDICTED: similar to Bone morphogenetic protein 4 precursor (BMP-4)
            (BMP-2B) isoform 1 [Canis familiaris].
          Length = 409

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +3

Query: 879  QRPPEEPAVHA--------DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLP 1034
            QR    P  HA        +C R SL + F ++GW+ WIV PP +   YCHG C  P   
Sbjct: 289  QRAKRSPKHHAQRARKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLAD 348

Query: 1035 NL 1040
            +L
Sbjct: 349  HL 350


>ref|XP_864214.1| PREDICTED: similar to Bone morphogenetic protein 4 precursor (BMP-4)
            (BMP-2B) isoform 7 [Canis familiaris].
          Length = 409

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +3

Query: 879  QRPPEEPAVHA--------DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLP 1034
            QR    P  HA        +C R SL + F ++GW+ WIV PP +   YCHG C  P   
Sbjct: 289  QRAKRSPKHHAQRARKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLAD 348

Query: 1035 NL 1040
            +L
Sbjct: 349  HL 350


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,086,053
Number of extensions: 2156851
Number of successful extensions: 15989
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 15516
Number of HSP's successfully gapped: 21
Length of query: 470
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 364
Effective length of database: 15,340,888
Effective search space: 5584083232
Effective search space used: 5584083232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002182.1| inhibin alpha chain preproprotein [Homo sapiens].    494   e-140
Alignment   gi|NP_055297.1| bone morphogenetic protein 10 preproprotein [Ho...    54   5e-07
Alignment   gi|NP_001192.2| bone morphogenetic protein 3 preproprotein [Hom...    54   5e-07
Alignment   gi|NP_113667.1| inhibin beta E chain precursor [Homo sapiens].        53   6e-07
Alignment   gi|NP_001709.1| bone morphogenetic protein 6 preproprotein [Hom...    53   8e-07
Alignment   gi|NP_065685.1| growth/differentiation factor 3 precursor [Homo...    52   2e-06
Alignment   gi|NP_570912.2| bone morphogenetic protein 4 preproprotein [Hom...    51   3e-06
Alignment   gi|NP_570911.2| bone morphogenetic protein 4 preproprotein [Hom...    51   3e-06
Alignment   gi|NP_001193.2| bone morphogenetic protein 4 preproprotein [Hom...    51   3e-06
Alignment   gi|NP_004953.1| bone morphogenetic protein 3B precursor [Homo s...    51   3e-06

>ref|NP_002182.1| inhibin alpha chain preproprotein [Homo sapiens].
          Length = 366

 Score =  494 bits (1273), Expect = e-140
 Identities = 252/354 (71%), Positives = 261/354 (73%), Gaps = 1/354 (0%)
 Frame = +3

Query: 171  PRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRGS 350
            P+ GH CQG EL RELVLAKVRALFLDALGPPAVT EGGDPGVRRLPRRHA+GGF  RGS
Sbjct: 13   PQGGHSCQGLELARELVLAKVRALFLDALGPPAVTREGGDPGVRRLPRRHALGGFTHRGS 72

Query: 351  EPEEE-DVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQLW 527
            EPEEE DVSQAILFPAT A C D+              F Y+FRPSQHTRSRQVTSAQLW
Sbjct: 73   EPEEEEDVSQAILFPATDASCEDKSAARGLAQEAEEGLFRYMFRPSQHTRSRQVTSAQLW 132

Query: 528  FHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXXX 707
            FHTGLDRQG AA+NSS PLL LLALS  GPVAVPMSLG APP WAVLHLA SA       
Sbjct: 133  FHTGLDRQGTAASNSSEPLLGLLALSPGGPVAVPMSLGHAPPHWAVLHLATSALSLLTHP 192

Query: 708  XXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRP 887
                          ARPEATPFLVAHTR RPPSGGERARRST               QRP
Sbjct: 193  VLVLLLRCPLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWPWSPSALRLLQRP 252

Query: 888  PEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXX 1067
            PEEPA HA+CHR +LNISFQELGW+RWIV+PPSFIFHYCHGGCGL   PNL L VPGA  
Sbjct: 253  PEEPAAHANCHRVALNISFQELGWERWIVYPPSFIFHYCHGGCGLHIPPNLSLPVPGAPP 312

Query: 1068 XXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
                      GAQPCCAALPGTMR L VRTTSDGGYSFKYETV NLLTQHCACI
Sbjct: 313  TPAQPYSLLPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYETVPNLLTQHCACI 366


>ref|NP_055297.1| bone morphogenetic protein 10 preproprotein [Homo sapiens].
          Length = 424

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 323  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 382

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 383  KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 423


>ref|NP_001192.2| bone morphogenetic protein 3 preproprotein [Homo sapiens].
          Length = 472

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF  +YC G C  P   +L  S              
Sbjct: 369  NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 428

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+  + CAC
Sbjct: 429  VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 471


>ref|NP_113667.1| inhibin beta E chain precursor [Homo sapiens].
          Length = 350

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 2/155 (1%)
 Frame = +3

Query: 768  PFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNISFQ 947
            PFL    RA  P  G RARR T                 P  EPA    C R    + FQ
Sbjct: 217  PFLELKIRANEPGAG-RARRRT-----------------PTCEPATPLCCRRDHY-VDFQ 257

Query: 948  ELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPCCAA 1121
            ELGW  WI+ P  +  +YC G C   L   P +  S   A             +  CC  
Sbjct: 258  ELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPASTSCC-- 315

Query: 1122 LPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
            +P   R L +      G   K + V +++ + C C
Sbjct: 316  VPTARRPLSLLYLDHNGNVVKTD-VPDMVVEACGC 349


>ref|NP_001709.1| bone morphogenetic protein 6 preproprotein [Homo sapiens].
          Length = 513

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 412  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 471

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 472  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 512


>ref|NP_065685.1| growth/differentiation factor 3 precursor [Homo sapiens].
          Length = 364

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
            CHR  L I+F++LGW +WI+ P  F+ +YCHG C
Sbjct: 264  CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGEC 297


>ref|NP_570912.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
          Length = 408

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
            +C R SL + F ++GW+ WIV PP +   YCHG C  P   +L
Sbjct: 307  NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349


>ref|NP_570911.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
          Length = 408

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
            +C R SL + F ++GW+ WIV PP +   YCHG C  P   +L
Sbjct: 307  NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349


>ref|NP_001193.2| bone morphogenetic protein 4 preproprotein [Homo sapiens].
          Length = 408

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
            +C R SL + F ++GW+ WIV PP +   YCHG C  P   +L
Sbjct: 307  NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349


>ref|NP_004953.1| bone morphogenetic protein 3B precursor [Homo sapiens].
          Length = 478

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
 Frame = +3

Query: 891  EEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSVPGAX 1064
            +EP V   C R  L + F ++GW+ WI+ P SF  +YC G C  P +P +  P +     
Sbjct: 371  DEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFP-MPKIVRPSNHATIQ 426

Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                         +PCC  +P  M SL V    D   +   +   N+    CAC
Sbjct: 427  SIVRAVGIIPGIPEPCC--VPDKMNSLGV-LFLDENRNVVLKVYPNMSVDTCAC 477


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,520,522
Number of extensions: 2083720
Number of successful extensions: 14786
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 14208
Number of HSP's successfully gapped: 13
Length of query: 470
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 364
Effective length of database: 14,802,980
Effective search space: 5388284720
Effective search space used: 5388284720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034694.3| inhibin alpha chain precursor [Mus musculus].        488   e-138
Alignment   gi|NP_032134.2| growth/differentiation factor 3 precursor [Mus ...    53   7e-07
Alignment   gi|NP_031582.1| bone morphogenetic protein 6 precursor [Mus mus...    52   9e-07
Alignment   gi|NP_775580.1| bone morphogenetic protein 3 precursor [Mus mus...    52   1e-06
Alignment   gi|NP_665684.2| bone morphogenetic protein 3B precursor [Mus mu...    52   1e-06
Alignment   gi|NP_033886.2| bone morphogenetic protein 10 preproprotein [Mu...    52   1e-06
Alignment   gi|NP_032408.2| inhibin beta E chain precursor [Mus musculus].        52   1e-06
Alignment   gi|NP_031580.2| bone morphogenetic protein 4 precursor [Mus mus...    51   2e-06
Alignment   gi|NP_031581.2| bone morphogenetic protein 5 [Mus musculus].          50   3e-06
Alignment   gi|NP_031583.2| bone morphogenetic protein 7 precursor [Mus mus...    50   3e-06

>ref|NP_034694.3| inhibin alpha chain precursor [Mus musculus].
          Length = 366

 Score =  488 bits (1257), Expect = e-138
 Identities = 246/352 (69%), Positives = 259/352 (73%)
 Frame = +3

Query: 174  RSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRRHAVGGFMRRGSE 353
            R    CQGPEL RELVLAKV+ALFLDALGPPA+ GEGGDPG+RRLPRRHAVGGFM R SE
Sbjct: 16   RDVDSCQGPELVRELVLAKVKALFLDALGPPAMDGEGGDPGIRRLPRRHAVGGFMHRTSE 75

Query: 354  PEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTRSRQVTSAQLWFH 533
            PEEEDVSQAILFPATGA C D+P             FTYVFRPSQH RS QVTSAQLWFH
Sbjct: 76   PEEEDVSQAILFPATGATCEDQPAARGLAQEAEEGLFTYVFRPSQHIRSHQVTSAQLWFH 135

Query: 534  TGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLAASAXXXXXXXXX 713
            TGL R+  AAANSS PLLDLL LSS GP+AVP+SLGQ PPRWAVLHLAASA         
Sbjct: 136  TGLGRKSTAAANSSAPLLDLLVLSSGGPMAVPVSLGQGPPRWAVLHLAASAFPLLTHPIL 195

Query: 714  XXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPE 893
                         RPE TPFLVAHTRAR PS GERARRST               QRPPE
Sbjct: 196  VLLLRCPLCSCSGRPETTPFLVAHTRARAPSAGERARRSTPSVPWPWSPAALRLLQRPPE 255

Query: 894  EPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXX 1073
            EPA HA CHRA+LNISFQELGWDRWIVHPPSFIFHYCHG CG+PT  +LPL VPG     
Sbjct: 256  EPAAHAFCHRAALNISFQELGWDRWIVHPPSFIFHYCHGSCGMPT-SDLPLPVPGVPPTP 314

Query: 1074 XXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCACI 1229
                    GA+PCCAALPG+MRSLRVRTTSDGGYSFKYE V NL+TQHCACI
Sbjct: 315  VQPLFLVPGAKPCCAALPGSMRSLRVRTTSDGGYSFKYEMVPNLITQHCACI 366


>ref|NP_032134.2| growth/differentiation factor 3 precursor [Mus musculus].
          Length = 366

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
            CHR  L I+FQ+LGW +W++ P  F+ +YCHG C
Sbjct: 266  CHRHQLFINFQDLGWHKWVIAPKGFMANYCHGEC 299


>ref|NP_031582.1| bone morphogenetic protein 6 precursor [Mus musculus].
          Length = 510

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 409  CKKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 468

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 469  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 509


>ref|NP_775580.1| bone morphogenetic protein 3 precursor [Mus musculus].
          Length = 468

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF   YC G C  P   +L  S              
Sbjct: 365  NCARRYLKVDFADIGWSEWIISPKSFDAFYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 424

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+    CAC
Sbjct: 425  VSGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVDSCAC 467


>ref|NP_665684.2| bone morphogenetic protein 3B precursor [Mus musculus].
          Length = 476

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
 Frame = +3

Query: 879  QRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSV 1052
            +R  +EP V   C R  L + F ++GW+ WI+ P SF  +YC G C  P +P +  P + 
Sbjct: 365  RRQWDEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFP-MPKIVRPSNH 420

Query: 1053 PGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                             +PCC  +P  M SL V    D   +   +   N+  + CAC
Sbjct: 421  ATIQSIVRAVGIVPGIPEPCC--VPDKMNSLGV-LFLDENRNAVLKVYPNMSVETCAC 475


>ref|NP_033886.2| bone morphogenetic protein 10 preproprotein [Mus musculus].
          Length = 421

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 320  CKKTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 379

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 380  KASKACC--VPTKLDPISILYLDKGVVTYKFKYE---GMAVSECGC 420


>ref|NP_032408.2| inhibin beta E chain precursor [Mus musculus].
          Length = 350

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 44/155 (28%), Positives = 56/155 (36%), Gaps = 2/155 (1%)
 Frame = +3

Query: 768  PFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNISFQ 947
            PFL    RA  P  G RARR T                  PE P     C R    + FQ
Sbjct: 217  PFLELKIRANEPGAG-RARRRTPTCE--------------PETPL----CCRRDHYVDFQ 257

Query: 948  ELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPCCAA 1121
            ELGW  WI+ P  +  +YC G C   L   P +  S   A                CC  
Sbjct: 258  ELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPAGSSCC-- 315

Query: 1122 LPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
            +P   R L +      G   K + V +++ + C C
Sbjct: 316  VPTARRPLSLLYLDHNGNVVKTD-VPDMVVEACGC 349


>ref|NP_031580.2| bone morphogenetic protein 4 precursor [Mus musculus].
          Length = 408

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +3

Query: 885  PPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL 1040
            P      + +C R SL + F ++GW+ WIV PP +   YCHG C  P   +L
Sbjct: 298  PQRSRKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHL 349


>ref|NP_031581.2| bone morphogenetic protein 5 [Mus musculus].
          Length = 454

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/104 (25%), Positives = 44/104 (42%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SF++LGW  WI+ P  +   YC G C  P   ++  +               
Sbjct: 353  CKKHELYVSFRDLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQTLVHLMFPD 412

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 413  HVPKPCCA--PTKLNAISVLYFDDSS-NVILKKYRNMVVRSCGC 453


>ref|NP_031583.2| bone morphogenetic protein 7 precursor [Mus musculus].
          Length = 430

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/104 (25%), Positives = 44/104 (42%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SF++LGW  WI+ P  +  +YC G C  P    +  +               
Sbjct: 329  CKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPD 388

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 389  TVPKPCCA--PTQLNAISVLYFDDSS-NVILKKYRNMVVRACGC 429


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,076,872
Number of extensions: 1695862
Number of successful extensions: 11522
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 11039
Number of HSP's successfully gapped: 14
Length of query: 470
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 365
Effective length of database: 12,463,779
Effective search space: 4549279335
Effective search space used: 4549279335
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999354.1| inhibin alpha chain precursor [Sus scrofa].          592   e-169
Alignment   gi|XP_003125118.1| PREDICTED: bone morphogenetic protein 10 [Su...    54   3e-07
Alignment   gi|NP_001193317.1| bone morphogenetic protein 3 [Sus scrofa].         54   3e-07
Alignment   gi|XP_003126368.1| PREDICTED: inhibin beta E chain-like [Sus sc...    53   4e-07
Alignment   gi|XP_003128222.2| PREDICTED: bone morphogenetic protein 6-like...    53   5e-07
Alignment   gi|NP_001161473.1| bone morphogenetic protein 6 [Sus scrofa].         53   5e-07
Alignment   gi|XP_003133153.1| PREDICTED: bone morphogenetic protein 3B-lik...    52   8e-07
Alignment   gi|XP_003355631.1| PREDICTED: growth/differentiation factor 3-l...    52   8e-07
Alignment   gi|XP_003126560.1| PREDICTED: growth/differentiation factor 3-l...    52   8e-07
Alignment   gi|XP_003123591.1| PREDICTED: embryonic growth/differentiation ...    52   8e-07

>ref|NP_999354.1| inhibin alpha chain precursor [Sus scrofa].
          Length = 364

 Score =  592 bits (1527), Expect = e-169
 Identities = 295/364 (81%), Positives = 295/364 (81%)
 Frame = +3

Query: 138  MWPQXXXXXXAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 317
            MWPQ      APRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR
Sbjct: 1    MWPQLLLLLLAPRSGHGCQGPELDRELVLAKVRALFLDALGPPAVTGEGGDPGVRRLPRR 60

Query: 318  HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPXXXXXXXXXXXXXFTYVFRPSQHTR 497
            HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEP             FTYVFRPSQHT 
Sbjct: 61   HAVGGFMRRGSEPEEEDVSQAILFPATGARCGDEPAAGELAREAEEGLFTYVFRPSQHTH 120

Query: 498  SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 677
            SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA
Sbjct: 121  SRQVTSAQLWFHTGLDRQGMAAANSSGPLLDLLALSSRGPVAVPMSLGQAPPRWAVLHLA 180

Query: 678  ASAXXXXXXXXXXXXXXXXXXXXXARPEATPFLVAHTRARPPSGGERARRSTXXXXXXXX 857
            ASA                     ARPEATPFLVAHTRARPPSGGERARRST        
Sbjct: 181  ASALPLLTHPVLVLLLRCPLCSCSARPEATPFLVAHTRARPPSGGERARRSTAPLPWPWS 240

Query: 858  XXXXXXXQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 1037
                   QRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN
Sbjct: 241  PAALRLLQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPN 300

Query: 1038 LPLSVPGAXXXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQH 1217
            LPLSVPGA            GAQPCCAALPGTMRSLRVRTTSDGGYSFKYETV NLLTQH
Sbjct: 301  LPLSVPGAPPTPVQPLLLVPGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVPNLLTQH 360

Query: 1218 CACI 1229
            CACI
Sbjct: 361  CACI 364


>ref|XP_003125118.1| PREDICTED: bone morphogenetic protein 10 [Sus scrofa].
          Length = 423

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C R  L I F+E+GWD WI+ PP +  + C G C  P   +L  +               
Sbjct: 322  CKRTPLYIDFKEIGWDSWIIAPPGYEAYECRGVCNYPLAEHLTPTKHAIIQALVHLKNSQ 381

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDG--GYSFKYETVRNLLTQHCAC 1226
              ++ CC  +P  +  + +     G   Y FKYE    +    C C
Sbjct: 382  KASKACC--VPTKLEPISILYLDKGVVTYKFKYE---GMAVSECGC 422


>ref|NP_001193317.1| bone morphogenetic protein 3 [Sus scrofa].
          Length = 475

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 912  DCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXX 1091
            +C R  L + F ++GW  WI+ P SF  +YC G C  P   +L  S              
Sbjct: 372  NCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGV 431

Query: 1092 XXG-AQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
              G  +PCC  +P  M SL +    D   +   +   N+  + CAC
Sbjct: 432  VPGIPEPCC--VPEKMSSLSI-LFFDENKNVVLKVYPNMTVESCAC 474


>ref|XP_003126368.1| PREDICTED: inhibin beta E chain-like [Sus scrofa].
          Length = 351

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 46/158 (29%), Positives = 59/158 (37%), Gaps = 2/158 (1%)
 Frame = +3

Query: 759  EATPFLVAHTRARPPSGGERARRSTXXXXXXXXXXXXXXXQRPPEEPAVHADCHRASLNI 938
            E  PFL   TR + P  G RARR T                  PE P     C R    +
Sbjct: 215  EQRPFLELKTRPKEPGAG-RARRRTPTCE--------------PETPL----CCRRDHYV 255

Query: 939  SFQELGWDRWIVHPPSFIFHYCHGGC--GLPTLPNLPLSVPGAXXXXXXXXXXXXGAQPC 1112
             FQELGW  WI+ P  +  +YC G C   L   P +  S   A                C
Sbjct: 256  DFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVLSLLKANNPWPLGTSC 315

Query: 1113 CAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
            C  +P   RSL +      G   K + V +++ + C C
Sbjct: 316  C--VPTARRSLSLLYLDRDGNVVKTD-VPDMVVEACGC 350


>ref|XP_003128222.2| PREDICTED: bone morphogenetic protein 6-like, partial [Sus scrofa].
          Length = 306

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 205  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 264

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 265  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 305


>ref|NP_001161473.1| bone morphogenetic protein 6 [Sus scrofa].
          Length = 506

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLSVPGAXXXXXXXXXXX 1094
            C +  L +SFQ+LGW  WI+ P  +  +YC G C  P   ++  +               
Sbjct: 405  CRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPE 464

Query: 1095 XGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
               +PCCA  P  + ++ V    D   +   +  RN++ + C C
Sbjct: 465  YVPKPCCA--PTKLNAISVLYFDDNS-NVILKKYRNMVVRACGC 505


>ref|XP_003133153.1| PREDICTED: bone morphogenetic protein 3B-like [Sus scrofa].
          Length = 475

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
 Frame = +3

Query: 891  EEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNL--PLSVPGAX 1064
            +EP V   C R  L + F ++GW+ WI+ P SF  +YC G C  P +P +  P +     
Sbjct: 368  DEPRV---CSRRYLKVDFADIGWNEWIISPKSFDAYYCSGACEFP-MPKIVRPSNHATIQ 423

Query: 1065 XXXXXXXXXXXGAQPCCAALPGTMRSLRVRTTSDGGYSFKYETVRNLLTQHCAC 1226
                         +PCC  +P  M SL V    D   +   +   N+  + CAC
Sbjct: 424  SIVRAVGIVPGIPEPCC--VPDKMNSLGV-LFLDENRNVVLKVYPNMSVETCAC 474


>ref|XP_003355631.1| PREDICTED: growth/differentiation factor 3-like [Sus scrofa].
          Length = 273

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
            CHR  L I+F++LGW +WI+ P  F+ +YCHG C
Sbjct: 173  CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGDC 206


>ref|XP_003126560.1| PREDICTED: growth/differentiation factor 3-like [Sus scrofa].
          Length = 363

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 915  CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGC 1016
            CHR  L I+F++LGW +WI+ P  F+ +YCHG C
Sbjct: 263  CHRHQLFINFRDLGWHKWIIAPKGFMANYCHGDC 296


>ref|XP_003123591.1| PREDICTED: embryonic growth/differentiation factor 1-like [Sus
            scrofa].
          Length = 276

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 882  RPPEEPAVHAD----CHRASLNISFQELGWDRWIVHPPSFIFHYCHGGCGLPTLPNLPLS 1049
            R   EPAV       C    L +SF+E+GW RW++ P  F+ +YC G C LP   + P  
Sbjct: 156  RREAEPAVGGGSGGACRTRRLYVSFREVGWHRWVIAPRGFLANYCQGKCALPAALSEPGG 215

Query: 1050 VP 1055
             P
Sbjct: 216  TP 217


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,804,463
Number of extensions: 1402931
Number of successful extensions: 10213
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9876
Number of HSP's successfully gapped: 15
Length of query: 470
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 367
Effective length of database: 8,779,541
Effective search space: 3222091547
Effective search space used: 3222091547
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007098
         (1412 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1164   0.0  

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1164 bits (587), Expect = 0.0
 Identities = 622/631 (98%), Gaps = 2/631 (0%)
 Strand = Plus / Minus

                                                                             
Query: 397       caggtgcccgctgtggggacgagccagctgctggagagctggcccgggaggctgaggagg 456
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134508306 caggtgcccgctgtggggacgagccagctgctggagagctggcccgggaggctgaggagg 134508247

                                                                             
Query: 457       gcctcttcacatatgtattccggccgtcccagcacacacgcagccgccaggtgacttcag 516
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134508246 gcctcttcacatatgtattccggccgtcccagcacacacgcagccgccaggtgacttcag 134508187

                                                                             
Query: 517       ctcagctgtggttccacacgggactggacagacagggaatggcagccgccaatagctctg 576
                 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134508186 ctcagctgtggttccacacgggactggacagacaggggatggcagccgccaatagctctg 134508127

                                                                             
Query: 577       ggcccctgctggacctgttggcactgtcatccaggggtcctgtggctgtgcccatgtcac 636
                 ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 134508126 ggcccctgctggacctgctggcactatcatccaggggtcctgtggctgtgcccatgtcac 134508067

                                                                             
Query: 637       taggccaggcaccccctcgctgggctgtgctgcacctggccgcctctgccctccctttgt 696
                 | |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 134508066 tgggccaggcgccccctcgctgggctgtgctgcacctggccgcctctgcccttcccttgt 134508007

                                                                             
Query: 697       tgacccacccagtcctggtgctgctgctgcgctgtcctctctgttcctgctcag-cccgg 755
                 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 134508006 tga-ccacccagtcctggtgctgctgctgcgctgtcctctctgttcctgctcagccccgg 134507948

                                                                             
Query: 756       cccgaggccacccccttcctggtggcccacactcgggccaggccacccagcggaggggag 815
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507947 cccgaggccacccccttcctggtggcccacactcgggccaggccacccagcggaggggag 134507888

                                                                             
Query: 816       agggcccgacgctccaccgcccctctgccctggccttggtcccccgccgcgctgcgcctg 875
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507887 agggcccgacgctccaccgcccctctgccctggccttggtcccccgccgcgctgcgcctg 134507828

                                                                             
Query: 876       ctgcagaggcccccggaggaacccgctgtgcacgccgactgccacagagcttccctcaac 935
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507827 ctgcagaggcccccggaggaacccgctgtgcacgccgactgccacagagcttccctcaac 134507768

                                                                             
Query: 936       atctccttccaggagctgggctgggaccggtggatcgtgcaccctcccagtttcatcttc 995
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507767 atctccttccaggagctgggctgggaccggtggatcgtgcaccctcccagtttcatcttc 134507708

                                                
Query: 996       cactactgtcacgggggctgcgggctgccga 1026
                 |||||||||||||||||||||||||||||||
Sbjct: 134507707 cactactgtcacgggggctgcgggctgccga 134507677



 Score =  791 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                             
Query: 3         gaagactggggtgagaaaggtagaagagggcggctggtgggatggggaggggagattggg 62
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511417 gaagactggggtgagaaaggtagaagagggcggctggtgggatggggaggggagattggg 134511358

                                                                             
Query: 63        gaggccctgggcagaccctgacagaaggggcacagggctgggtgtgggttcaccgttggc 122
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511357 gaggccctgggcagaccctgacagaaggggcacagggctgggtgtgggttcaccgttggc 134511298

                                                                             
Query: 123       agggccaggtgagctatgtggcctcagctgctcctcttgctgttggccccacggagtggg 182
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511297 agggccaggtgagctatgtggcctcagctgctcctcttgctgttggccccacggagtggg 134511238

                                                                             
Query: 183       catggctgccagggcccggagctggaccgggagcttgtcctggccaaggtgagggctctg 242
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511237 catggctgccagggcccggagctggaccgggagcttgtcctggccaaggtgagggctctg 134511178

                                                                             
Query: 243       ttcctggatgccttgggacccccggcagtgactggggaaggtggggatcctggagtcagg 302
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511177 ttcctggatgccttgggacccccggcagtgactggggaaggtggggatcctggagtcagg 134511118

                                                                             
Query: 303       cgtctgccccgaagacatgctgtggggggcttcatgcgcaggggctctgagcccgaggag 362
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134511117 cgtctgccccgaagacatgctgtggggggcttcatgcgcaggggctctgagcccgaggag 134511058

                                                        
Query: 363       gaggatgtctcccaggccatccttttcccggctacaggt 401
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 134511057 gaggatgtctcccaggccatccttttcccggctacaggt 134511019



 Score =  369 bits (186), Expect = 3e-99
 Identities = 198/202 (98%)
 Strand = Plus / Minus

                                                                             
Query: 1087      tgttggtgccaggggctcagccctgctgcgctgctctcccggggaccatgaggtccctac 1146
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134507616 tgttggtgccaggggctcagccctgctgcgctgctctcccggggaccatgaggtccctac 134507557

                                                                             
Query: 1147      gcgttcgcaccacctcggatggaggttactctttcaagtacgagacggtgcgcaaccttc 1206
                 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 134507556 gcgttcgcaccacctcggatggaggttactctttcaagtacgagacagtgcccaaccttc 134507497

                                                                             
Query: 1207      tcacccagcactgtgcctgcatctaaaggtgtcccgctggtggccgagctcccacaggca 1266
                 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 134507496 tcacccagcactgtgcctgcatctaagggtgtcccgctggtggccaagctcccacaggca 134507437

                                       
Query: 1267      ccagcctggaggaaggcagagt 1288
                 ||||||||||||||||||||||
Sbjct: 134507436 ccagcctggaggaaggcagagt 134507415



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                                    
Query: 1353      atgggtaatgtgacaataaacagcatagtgcagat 1387
                 |||||||||||||||||||||||||||||||||||
Sbjct: 134507350 atgggtaatgtgacaataaacagcatagtgcagat 134507316


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,418,587
Number of extensions: 334
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 4
Length of query: 1412
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1391
Effective length of database: 2,808,413,156
Effective search space: 3906502699996
Effective search space used: 3906502699996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)