Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029514.1| cyclic AMP-dependent transcription factor AT... 408 e-114
Alignment gi|NP_001179351.1| cyclic AMP-dependent transcription factor AT... 50 4e-06
Alignment gi|XP_002695170.1| PREDICTED: activating transcription factor 5... 50 4e-06
>ref|NP_001029514.1| cyclic AMP-dependent transcription factor ATF-4 [Bos taurus].
Length = 348
Score = 408 bits (1049), Expect = e-114
Identities = 230/350 (65%), Positives = 235/350 (67%), Gaps = 4/350 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
MAEMSFLSSEVL GD +SPFD D+ LEVAKHFK HGFS DKAKAGSSE
Sbjct: 1 MAEMSFLSSEVLGGDFVSPFDQLGLGAEESLGLLDDNLEVAKHFKHHGFSCDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLAVD LVS DNSKEDAFSGTDWMVEKMDLKEFDFD L DDLETMPDELLATLDDTC
Sbjct: 61 WLAVDWLVS--DNSKEDAFSGTDWMVEKMDLKEFDFDILFSKDDLETMPDELLATLDDTC 118
Query: 650 DLFDPPLQ----EPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSL 817
DLF P +Q EPPQIVNPIGHLPE LPT DQ APFTF Q LP SPG LSSTPD+SFSL
Sbjct: 119 DLFQPLVQETNKEPPQIVNPIGHLPEGLPTIDQGAPFTFFQPLPPSPGTLSSTPDHSFSL 178
Query: 818 EIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXX 997
E+ EV I EGD KPDSTT T PQCIKEEDAPSDNDSGICMSPDS LGSPQ
Sbjct: 179 ELCSEVVIPEGDSKPDSTT--TGFPQCIKEEDAPSDNDSGICMSPDSSLGSPQDSPSTSR 236
Query: 998 XXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKK 1177
GS RPKPYD TAATRYRQKK
Sbjct: 237 GSPNKSLLSPGALSGSSRPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKK 296
Query: 1178 RAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKR 1327
RAEQEALTG DSLAKEIQYLKD IEEVRKAR KKR
Sbjct: 297 RAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDQIEEVRKAREKKR 346
>ref|NP_001179351.1| cyclic AMP-dependent transcription factor ATF-5 [Bos taurus].
Length = 283
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 221 SAALRYRQRKRAEGEALEGECQGLEARNRELRERAESVEREIQYVKDLLIEVYKARSQR 279
>ref|XP_002695170.1| PREDICTED: activating transcription factor 5-like [Bos taurus].
Length = 283
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 221 SAALRYRQRKRAEGEALEGECQGLEARNRELRERAESVEREIQYVKDLLIEVYKARSQR 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,183,087
Number of extensions: 1364032
Number of successful extensions: 4608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4586
Number of HSP's successfully gapped: 3
Length of query: 471
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 365
Effective length of database: 14,174,046
Effective search space: 5173526790
Effective search space used: 5173526790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859677.1| PREDICTED: similar to activating transcription ... 470 e-132
Alignment gi|XP_531731.1| PREDICTED: similar to activating transcription ... 470 e-132
>ref|XP_859677.1| PREDICTED: similar to activating transcription factor 4 isoform 2
[Canis familiaris].
Length = 350
Score = 470 bits (1210), Expect = e-132
Identities = 249/352 (70%), Positives = 258/352 (73%), Gaps = 4/352 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
MAEMSFLSSEVLVGDLMSPFD D+YLEVAKHFKPHGFS DKAKAGSSE
Sbjct: 1 MAEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLA+DGLVSASDN KEDAFSGTDWMVEKMDLKEFDFD L IDDLETMPDELLATLDDTC
Sbjct: 61 WLALDGLVSASDNGKEDAFSGTDWMVEKMDLKEFDFDTLFSIDDLETMPDELLATLDDTC 120
Query: 650 DLFDPPLQ----EPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSL 817
DLFDP +Q EPPQIVNPIGHLPESLP TDQ+APFTFLQ LPLSPGALSSTPD+SFSL
Sbjct: 121 DLFDPLVQETNKEPPQIVNPIGHLPESLPKTDQIAPFTFLQPLPLSPGALSSTPDHSFSL 180
Query: 818 EIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXX 997
E+ EV+ISEGDRK DST YIT+IPQCIKEEDAPSDNDSGICMSP+SYLGSPQH
Sbjct: 181 ELGSEVDISEGDRKSDSTAYITVIPQCIKEEDAPSDNDSGICMSPESYLGSPQHSPSTSR 240
Query: 998 XXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKK 1177
CGS RPKPYD TAATRYRQKK
Sbjct: 241 GSPNRSLLSPGSLCGSARPKPYD--PPGEKTAKVKVEKLDKKLKKMEQNKTAATRYRQKK 298
Query: 1178 RAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
RAEQEALTG DSLAKEIQYLKDLIEEVRKAR KKR P
Sbjct: 299 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKAREKKRVP 350
>ref|XP_531731.1| PREDICTED: similar to activating transcription factor 4 isoform 1
[Canis familiaris].
Length = 350
Score = 470 bits (1210), Expect = e-132
Identities = 249/352 (70%), Positives = 258/352 (73%), Gaps = 4/352 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
MAEMSFLSSEVLVGDLMSPFD D+YLEVAKHFKPHGFS DKAKAGSSE
Sbjct: 1 MAEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLA+DGLVSASDN KEDAFSGTDWMVEKMDLKEFDFD L IDDLETMPDELLATLDDTC
Sbjct: 61 WLALDGLVSASDNGKEDAFSGTDWMVEKMDLKEFDFDTLFSIDDLETMPDELLATLDDTC 120
Query: 650 DLFDPPLQ----EPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSL 817
DLFDP +Q EPPQIVNPIGHLPESLP TDQ+APFTFLQ LPLSPGALSSTPD+SFSL
Sbjct: 121 DLFDPLVQETNKEPPQIVNPIGHLPESLPKTDQIAPFTFLQPLPLSPGALSSTPDHSFSL 180
Query: 818 EIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXX 997
E+ EV+ISEGDRK DST YIT+IPQCIKEEDAPSDNDSGICMSP+SYLGSPQH
Sbjct: 181 ELGSEVDISEGDRKSDSTAYITVIPQCIKEEDAPSDNDSGICMSPESYLGSPQHSPSTSR 240
Query: 998 XXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKK 1177
CGS RPKPYD TAATRYRQKK
Sbjct: 241 GSPNRSLLSPGSLCGSARPKPYD--PPGEKTAKVKVEKLDKKLKKMEQNKTAATRYRQKK 298
Query: 1178 RAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
RAEQEALTG DSLAKEIQYLKDLIEEVRKAR KKR P
Sbjct: 299 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKAREKKRVP 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,592,496
Number of extensions: 1419848
Number of successful extensions: 4837
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4812
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 365
Effective length of database: 15,340,888
Effective search space: 5599424120
Effective search space used: 5599424120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_877962.1| cyclic AMP-dependent transcription factor ATF-4... 454 e-128
Alignment gi|NP_001666.2| cyclic AMP-dependent transcription factor ATF-4... 454 e-128
Alignment gi|NP_036200.2| cyclic AMP-dependent transcription factor ATF-5... 50 4e-06
Alignment gi|NP_001180575.1| cyclic AMP-dependent transcription factor AT... 50 4e-06
>ref|NP_877962.1| cyclic AMP-dependent transcription factor ATF-4 [Homo sapiens].
Length = 351
Score = 454 bits (1169), Expect = e-128
Identities = 240/352 (68%), Positives = 252/352 (71%), Gaps = 4/352 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
M EMSFLSSEVLVGDLMSPFD D+YLEVAKHFKPHGFS DKAKAGSSE
Sbjct: 1 MTEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLAVDGLVS S+NSKEDAFSGTDWM+EKMDLKEFD DALLGIDDLETMPD+LL TLDDTC
Sbjct: 61 WLAVDGLVSPSNNSKEDAFSGTDWMLEKMDLKEFDLDALLGIDDLETMPDDLLTTLDDTC 120
Query: 650 DLFDPPLQE----PPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSL 817
DLF P +QE PPQ VNPIGHLPESL DQVAPFTFLQ LPLSPG LSSTPD+SFSL
Sbjct: 121 DLFAPLVQETNKQPPQTVNPIGHLPESLTKPDQVAPFTFLQPLPLSPGVLSSTPDHSFSL 180
Query: 818 EIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXX 997
E+ EV+I+EGDRKPD T Y+ +IPQCIKEED PSDNDSGICMSP+SYLGSPQH
Sbjct: 181 ELGSEVDITEGDRKPDYTAYVAMIPQCIKEEDTPSDNDSGICMSPESYLGSPQH-SPSTR 239
Query: 998 XXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKK 1177
CGS RPKPYD TAATRYRQKK
Sbjct: 240 GSPNRSLPSPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKK 299
Query: 1178 RAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
RAEQEALTG DSLAKEIQYLKDLIEEVRKARGKKR P
Sbjct: 300 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKARGKKRVP 351
>ref|NP_001666.2| cyclic AMP-dependent transcription factor ATF-4 [Homo sapiens].
Length = 351
Score = 454 bits (1169), Expect = e-128
Identities = 240/352 (68%), Positives = 252/352 (71%), Gaps = 4/352 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
M EMSFLSSEVLVGDLMSPFD D+YLEVAKHFKPHGFS DKAKAGSSE
Sbjct: 1 MTEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLAVDGLVS S+NSKEDAFSGTDWM+EKMDLKEFD DALLGIDDLETMPD+LL TLDDTC
Sbjct: 61 WLAVDGLVSPSNNSKEDAFSGTDWMLEKMDLKEFDLDALLGIDDLETMPDDLLTTLDDTC 120
Query: 650 DLFDPPLQE----PPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSL 817
DLF P +QE PPQ VNPIGHLPESL DQVAPFTFLQ LPLSPG LSSTPD+SFSL
Sbjct: 121 DLFAPLVQETNKQPPQTVNPIGHLPESLTKPDQVAPFTFLQPLPLSPGVLSSTPDHSFSL 180
Query: 818 EIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXX 997
E+ EV+I+EGDRKPD T Y+ +IPQCIKEED PSDNDSGICMSP+SYLGSPQH
Sbjct: 181 ELGSEVDITEGDRKPDYTAYVAMIPQCIKEEDTPSDNDSGICMSPESYLGSPQH-SPSTR 239
Query: 998 XXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKK 1177
CGS RPKPYD TAATRYRQKK
Sbjct: 240 GSPNRSLPSPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKLKKMEQNKTAATRYRQKK 299
Query: 1178 RAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
RAEQEALTG DSLAKEIQYLKDLIEEVRKARGKKR P
Sbjct: 300 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKARGKKRVP 351
>ref|NP_036200.2| cyclic AMP-dependent transcription factor ATF-5 [Homo sapiens].
Length = 282
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 220 SAALRYRQRKRAEGEALEGECQGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQR 278
>ref|NP_001180575.1| cyclic AMP-dependent transcription factor ATF-5 [Homo sapiens].
Length = 282
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 220 SAALRYRQRKRAEGEALEGECQGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQR 278
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,416,127
Number of extensions: 1386288
Number of successful extensions: 4555
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4535
Number of HSP's successfully gapped: 4
Length of query: 471
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 365
Effective length of database: 14,802,980
Effective search space: 5403087700
Effective search space used: 5403087700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033846.2| cyclic AMP-dependent transcription factor ATF-4... 416 e-116
Alignment gi|NP_109618.1| cyclic AMP-dependent transcription factor ATF-5... 50 3e-06
>ref|NP_033846.2| cyclic AMP-dependent transcription factor ATF-4 [Mus musculus].
Length = 349
Score = 416 bits (1070), Expect = e-116
Identities = 229/353 (64%), Positives = 241/353 (68%), Gaps = 5/353 (1%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
M EMSFL+SEVL GDLMSPFD D+YLEVAKH KPHGFS DKA GSSE
Sbjct: 1 MTEMSFLNSEVLAGDLMSPFDQSGLGAEESLGLLDDYLEVAKHLKPHGFSSDKA--GSSE 58
Query: 470 WLAVD-GLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDT 646
W A+D GL SASD KEDAFSGTDWM+EKMDLKEFDFDAL +DDLETMPDELL TLDDT
Sbjct: 59 WPAMDDGLASASDTGKEDAFSGTDWMLEKMDLKEFDFDALFRMDDLETMPDELLTTLDDT 118
Query: 647 CDLFDPPLQE----PPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFS 814
CDLF P +QE PPQ VNPIGHLPESL DQVAPFTFLQ P SPG LSSTP++SFS
Sbjct: 119 CDLFAPLVQETNKEPPQTVNPIGHLPESLIKVDQVAPFTFLQPFPCSPGVLSSTPEHSFS 178
Query: 815 LEIQGEVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXX 994
LE+ EV+ISEGDRKPDS YITLIP C+KEED PSDNDSGICMSP+SYLGSPQH
Sbjct: 179 LELGSEVDISEGDRKPDSAAYITLIPPCVKEEDTPSDNDSGICMSPESYLGSPQHSPSTS 238
Query: 995 XXXXXXXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQK 1174
GS RPKPYD TAATRYRQK
Sbjct: 239 RAPPDNLPSPGGSR-GSPRPKPYD-PPGVSLTAKVKTEKLDKKLKKMEQNKTAATRYRQK 296
Query: 1175 KRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
KRAEQEALTG DSLAKEIQYLKDLIEEVRKARGKKR P
Sbjct: 297 KRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEVRKARGKKRVP 349
>ref|NP_109618.1| cyclic AMP-dependent transcription factor ATF-5 [Mus musculus].
Length = 283
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 221 SAALRYRQRKRAEGEALEGECQGLEARNRELRERAESVEREIQYVKDLLIEVYKARSQR 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,530,988
Number of extensions: 1148505
Number of successful extensions: 3707
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3682
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 366
Effective length of database: 12,463,779
Effective search space: 4561743114
Effective search space used: 4561743114
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116550.1| cyclic AMP-dependent transcription factor AT... 525 e-149
Alignment gi|XP_003127404.1| PREDICTED: cyclic AMP-dependent transcriptio... 50 2e-06
>ref|NP_001116550.1| cyclic AMP-dependent transcription factor ATF-4 [Sus scrofa].
Length = 348
Score = 525 bits (1353), Expect = e-149
Identities = 273/348 (78%), Positives = 273/348 (78%)
Frame = +2
Query: 290 MAEMSFLSSEVLVGDLMSPFDPXXXXXXXXXXXXDEYLEVAKHFKPHGFSGDKAKAGSSE 469
MAEMSFLSSEVLVGDLMSPFDP DEYLEVAKHFKPHGFSGDKAKAGSSE
Sbjct: 1 MAEMSFLSSEVLVGDLMSPFDPSGLGAEESLGLLDEYLEVAKHFKPHGFSGDKAKAGSSE 60
Query: 470 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALLGIDDLETMPDELLATLDDTC 649
WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDAL GIDDLETMPDELLATLDDTC
Sbjct: 61 WLAVDGLVSASDNSKEDAFSGTDWMVEKMDLKEFDFDALSGIDDLETMPDELLATLDDTC 120
Query: 650 DLFDPPLQEPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSLEIQG 829
DLFDPPLQEPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSLEIQG
Sbjct: 121 DLFDPPLQEPPQIVNPIGHLPESLPTTDQVAPFTFLQTLPLSPGALSSTPDNSFSLEIQG 180
Query: 830 EVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHXXXXXXXXXX 1009
EVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQH
Sbjct: 181 EVEISEGDRKPDSTTYITLIPQCIKEEDAPSDNDSGICMSPDSYLGSPQHSPSTSRASPS 240
Query: 1010 XXXXXXXXXCGSVRPKPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATRYRQKKRAEQ 1189
CGSVRPKPYD TAATRYRQKKRAEQ
Sbjct: 241 RSLLSPGAPCGSVRPKPYDPPGEKVVAAKVKGEKLDKKLKKMEQNKTAATRYRQKKRAEQ 300
Query: 1190 EALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKKRAP 1333
EALTG DSLAKEIQYLKDLIEEVRKARGKKRAP
Sbjct: 301 EALTGECKELEKKNEALKEKADSLAKEIQYLKDLIEEVRKARGKKRAP 348
>ref|XP_003127404.1| PREDICTED: cyclic AMP-dependent transcription factor ATF-5-like [Sus
scrofa].
Length = 350
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +2
Query: 1148 TAATRYRQKKRAEQEALTGXXXXXXXXXXXXXXXXDSLAKEIQYLKDLIEEVRKARGKK 1324
+AA RYRQ+KRAE EAL G +S+ +EIQY+KDL+ EV KAR ++
Sbjct: 220 SAALRYRQRKRAEGEALEGECQGLEARNRELRERAESVEREIQYVKDLLIEVYKARSQR 278
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,788,761
Number of extensions: 884258
Number of successful extensions: 2940
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2925
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 368
Effective length of database: 8,779,541
Effective search space: 3230871088
Effective search space used: 3230871088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007104
(1413 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1782 0.0
Sscrofa_Chr02 331 6e-88
>Sscrofa_Chr05
|| Length = 111506441
Score = 1782 bits (899), Expect = 0.0
Identities = 899/899 (100%)
Strand = Plus / Minus
Query: 515 gaggatgctttctccgggacagactggatggtggagaaaatggatctgaaggagttcgac 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043483 gaggatgctttctccgggacagactggatggtggagaaaatggatctgaaggagttcgac 6043424
Query: 575 ttcgatgccctgttgggtatagatgacctggaaaccatgccagatgagcttttggccacg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043423 ttcgatgccctgttgggtatagatgacctggaaaccatgccagatgagcttttggccacg 6043364
Query: 635 ttggatgacacatgtgatctctttgaccccccactccaggagcccccgcagatagtgaac 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043363 ttggatgacacatgtgatctctttgaccccccactccaggagcccccgcagatagtgaac 6043304
Query: 695 ccaattggccatctcccagaaagtttaccaacaactgaccaggttgccccctttacgttc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043303 ccaattggccatctcccagaaagtttaccaacaactgaccaggttgccccctttacgttc 6043244
Query: 755 ttgcaaactcttcccctttccccaggggccctgtcttccactccagataattcctttagt 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043243 ttgcaaactcttcccctttccccaggggccctgtcttccactccagataattcctttagt 6043184
Query: 815 ttagagatacagggtgaagtggaaatctcggaaggagataggaagccagactccactact 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043183 ttagagatacagggtgaagtggaaatctcggaaggagataggaagccagactccactact 6043124
Query: 875 tacattaccttgattcctcaatgcataaaggaagaggatgccccctcagataatgacagt 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043123 tacattaccttgattcctcaatgcataaaggaagaggatgccccctcagataatgacagt 6043064
Query: 935 ggcatctgtatgagccctgactcctatctgggctctccccagcacagtccctccacctcc 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043063 ggcatctgtatgagccctgactcctatctgggctctccccagcacagtccctccacctcc 6043004
Query: 995 agggcctctccaagtaggagcttgctctctcccggggccccttgtggttctgtccggccc 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043003 agggcctctccaagtaggagcttgctctctcccggggccccttgtggttctgtccggccc 6042944
Query: 1055 aaaccctatgatcctcctggagagaaggtggtagcagcaaaagtaaagggtgagaaacta 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042943 aaaccctatgatcctcctggagagaaggtggtagcagcaaaagtaaagggtgagaaacta 6042884
Query: 1115 gataagaagctgaagaagatggagcagaacaagacagcagccactcggtaccgccagaag 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042883 gataagaagctgaagaagatggagcagaacaagacagcagccactcggtaccgccagaag 6042824
Query: 1175 aagagggcagagcaggaggccctcactggcgaatgtaaagagctggaaaagaagaacgaa 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042823 aagagggcagagcaggaggccctcactggcgaatgtaaagagctggaaaagaagaacgaa 6042764
Query: 1235 gctctgaaagagaaggcagattccttggccaaggagattcagtatctcaaagatctgata 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042763 gctctgaaagagaaggcagattccttggccaaggagattcagtatctcaaagatctgata 6042704
Query: 1295 gaagaggtccgcaaggcacgggggaagaaacgcgccccctagctgccgggcaggggtgtg 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042703 gaagaggtccgcaaggcacgggggaagaaacgcgccccctagctgccgggcaggggtgtg 6042644
Query: 1355 catgtgcttgtacataggctagggctttagctgtgtgttgcaataaattattttgtagt 1413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042643 catgtgcttgtacataggctagggctttagctgtgtgttgcaataaattattttgtagt 6042585
Score = 630 bits (318), Expect = e-178
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 198 gcttctcacggcattcagcagcagcgttgctgtaaccgacaaagacaccttcgaattaag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043896 gcttctcacggcattcagcagcagcgttgctgtaaccgacaaagacaccttcgaattaag 6043837
Query: 258 cacattcctcgattccatcaaaactccgcaacatggccgagatgagcttcctgagcagcg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043836 cacattcctcgattccatcaaaactccgcaacatggccgagatgagcttcctgagcagcg 6043777
Query: 318 aggtgttggtgggggacttgatgtcccccttcgacccgtcgggtttgggggctgaagaga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043776 aggtgttggtgggggacttgatgtcccccttcgacccgtcgggtttgggggctgaagaga 6043717
Query: 378 gcttagggctcttagacgaatatctggaggtggccaagcacttcaaacctcatgggttct 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043716 gcttagggctcttagacgaatatctggaggtggccaagcacttcaaacctcatgggttct 6043657
Query: 438 ccggcgacaaagctaaggcgggctcctccgaatggctggctgtggatgggttggtcagtg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043656 ccggcgacaaagctaaggcgggctcctccgaatggctggctgtggatgggttggtcagtg 6043597
Query: 498 cctcagacaacagcaagg 515
||||||||||||||||||
Sbjct: 6043596 cctcagacaacagcaagg 6043579
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 7 catttcttttcctctccgctgtagatgtagtccttttctgcgagtgggcgcttttcttcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044659 catttcttttcctctccgctgtagatgtagtccttttctgcgagtgggcgcttttcttcc 6044600
Query: 67 tccgctcccgcagggtccgcggccgccatggcgtattagaggcagcagtgcctgcggcag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044599 tccgctcccgcagggtccgcggccgccatggcgtattagaggcagcagtgcctgcggcag 6044540
Query: 127 cattggcctttgcagcggcggcagcagcaccaggctctgcagcggcaccccccagcggct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044539 cattggcctttgcagcggcggcagcagcaccaggctctgcagcggcaccccccagcggct 6044480
Query: 187 taagccatggcg 198
||||||||||||
Sbjct: 6044479 taagccatggcg 6044468
>Sscrofa_Chr02
|| Length = 162569375
Score = 331 bits (167), Expect = 6e-88
Identities = 523/630 (83%), Gaps = 10/630 (1%)
Strand = Plus / Plus
Query: 190 gccatggcgcttctcacggcattcagcagcagcgttgctgtaaccgacaaagacaccttc 249
||||||| |||| ||| ||| ||||||||| | || || |||||| || |||| |||||
Sbjct: 623128 gccatggtgcttttcagggcgttcagcagcggggtggcggtaaccaaccgagactccttc 623187
Query: 250 gaattaagcacattcctcgattccatcaaaactccgcaacatggccgagatgagcttcct 309
||| |||||||||||| |||||||| |||| | || || ||||| || |||||||||
Sbjct: 623188 gaaggcagcacattcctccattccatccaaaccctgccacgtggcct-gaggagcttcct 623246
Query: 310 gagcagcgaggtgttggtgggggacttgatgtcccccttcgacccgtcgggtttgggggc 369
| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 623247 gggcagcgaggtgtcggtggggc-cttgatgtccccctttgacccgtcgggtttgggggc 623305
Query: 370 tgaagagagcttagggctcttagacgaatatctggaggtggccaagcacttcaaacctca 429
|||||||| |||||| |||| || ||| ||| |||||||| ||||||| | ||||
Sbjct: 623306 tgaagagatcttaggactctcaggggaacgcctgaaggtggccgcgcacttccagcctcg 623365
Query: 430 tgggttctccggcgacaaagctaaggcgggctcctccgaatggctggctgtggatgggtt 489
|||||||||| || ||| |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 623366 tgggttctccagccccaaggctaagccgggccgctcggaatggctggctgtggatgggtc 623425
Query: 490 ggtcagtgcctcagacaacagcaaggaggatgctttctccgggacagactggatggtgga 549
|||| |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||
Sbjct: 623426 ggtcggtgcctcagacaaccacagggagggtgcttcctccgggacagactgg-tggtgga 623484
Query: 550 gaaaatggatctgaaggagttcgacttcgatgccctgttgggtatagatgacctggaaac 609
| ||| ||||||||||| ||| ||| | ||||||||| |||| | || ||| ||||||
Sbjct: 623485 g-aaacggatctgaaggcgttggacgtggatgccctgctggg-gtccattacccggaaac 623542
Query: 610 catgccagatgagcttttggccacgttggatgacacatgtgatctctttgaccccccact 669
|| ||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||
Sbjct: 623543 cacaccagatgcacttttggccacgttggacgacacgtgtgatgtctttgagcccccact 623602
Query: 670 ccagga--gcccccgcagatagtgaacc-caattggccatctcccagaaagtttaccaac 726
|||||| ||||||| || ||||||| | | ||||||||||| ||| | |||||| |
Sbjct: 623603 ccaggaccccccccgccgacggtgaacctccctgggccatctcccggaagggttaccagc 623662
Query: 727 aactgaccaggttgccccctttacgttcttgcaaactcttcccctttccccaggggccct 786
| |||||| || || |||||| | ||||||||| |||| ||||||| |||||||||| ||
Sbjct: 623663 acctgacccggctg-ccccttcatgttcttgcacactc-tccccttcccccaggggcgct 623720
Query: 787 gtcttccactccagataattcctttagttt 816
|||||||||||||| ||||||||| ||||
Sbjct: 623721 atcttccactccagagaattccttttgttt 623750
Score = 331 bits (167), Expect = 6e-88
Identities = 523/630 (83%), Gaps = 10/630 (1%)
Strand = Plus / Plus
Query: 190 gccatggcgcttctcacggcattcagcagcagcgttgctgtaaccgacaaagacaccttc 249
||||||| |||| ||| ||| ||||||||| | || || |||||| || |||| |||||
Sbjct: 691803 gccatggtgcttttcagggcgttcagcagcggggtggcggtaaccaaccgagactccttc 691862
Query: 250 gaattaagcacattcctcgattccatcaaaactccgcaacatggccgagatgagcttcct 309
||| |||||||||||| |||||||| |||| | || || ||||| || |||||||||
Sbjct: 691863 gaaggcagcacattcctccattccatccaaaccctgccacgtggcct-gaggagcttcct 691921
Query: 310 gagcagcgaggtgttggtgggggacttgatgtcccccttcgacccgtcgggtttgggggc 369
| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 691922 gggcagcgaggtgtcggtggggc-cttgatgtccccctttgacccgtcgggtttgggggc 691980
Query: 370 tgaagagagcttagggctcttagacgaatatctggaggtggccaagcacttcaaacctca 429
|||||||| |||||| |||| || ||| ||| |||||||| ||||||| | ||||
Sbjct: 691981 tgaagagatcttaggactctcaggggaacgcctgaaggtggccgcgcacttccagcctcg 692040
Query: 430 tgggttctccggcgacaaagctaaggcgggctcctccgaatggctggctgtggatgggtt 489
|||||||||| || ||| |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 692041 tgggttctccagccccaaggctaagccgggccgctcggaatggctggctgtggatgggtc 692100
Query: 490 ggtcagtgcctcagacaacagcaaggaggatgctttctccgggacagactggatggtgga 549
|||| |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||
Sbjct: 692101 ggtcggtgcctcagacaaccacagggagggtgcttcctccgggacagactgg-tggtgga 692159
Query: 550 gaaaatggatctgaaggagttcgacttcgatgccctgttgggtatagatgacctggaaac 609
| ||| ||||||||||| ||| ||| | ||||||||| |||| | || ||| ||||||
Sbjct: 692160 g-aaacggatctgaaggcgttggacgtggatgccctgctggg-gtccattacccggaaac 692217
Query: 610 catgccagatgagcttttggccacgttggatgacacatgtgatctctttgaccccccact 669
|| ||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||
Sbjct: 692218 cacaccagatgcacttttggccacgttggacgacacgtgtgatgtctttgagcccccact 692277
Query: 670 ccagga--gcccccgcagatagtgaacc-caattggccatctcccagaaagtttaccaac 726
|||||| ||||||| || ||||||| | | ||||||||||| ||| | |||||| |
Sbjct: 692278 ccaggaccccccccgccgacggtgaacctccctgggccatctcccggaagggttaccagc 692337
Query: 727 aactgaccaggttgccccctttacgttcttgcaaactcttcccctttccccaggggccct 786
| |||||| || || |||||| | ||||||||| |||| ||||||| |||||||||| ||
Sbjct: 692338 acctgacccggctg-ccccttcatgttcttgcacactc-tccccttcccccaggggcgct 692395
Query: 787 gtcttccactccagataattcctttagttt 816
|||||||||||||| ||||||||| ||||
Sbjct: 692396 atcttccactccagagaattccttttgttt 692425
Score = 238 bits (120), Expect = 7e-60
Identities = 400/486 (82%), Gaps = 18/486 (3%)
Strand = Plus / Plus
Query: 931 cagtggcatctgtatgagccctgactcctatctgggctctccccagcacagtccctccac 990
||||||||||||| ||||||| ||| | ||||||||||||||||||||| ||||||||
Sbjct: 623864 cagtggcatctgtgtgagccccgacgc---tctgggctctccccagcacagcccctccac 623920
Query: 991 ctccagggcctctccaagtaggagcttgctctctcccggggccccttgtggttctgtccg 1050
|||| ||| ||||||| || ||||| ||||||||| | ||||| | |||| || ||| |
Sbjct: 623921 ctccgggggctctccacgtcggagcccgctctctccagaggcccgt-gtggctccgtctg 623979
Query: 1051 gcccaaaccctatgatcctcctggagagaaggtggtagcagcaaaagtaaagggtgagaa 1110
|||| |||||||||| ||| |||||||||||||| | ||| |||||| || |||||
Sbjct: 623980 gcccgaaccctatgaccct---ggagagaaggtggtcaccgcagaagtaacggaggagaa 624036
Query: 1111 actagataagaagctgaagaagatggagcagaacaag--acagcagccactcggtaccgc 1168
||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 624037 actggatacgaagctgaagaagatggagcagaacaagctgtagcagccactcggtgccgc 624096
Query: 1169 cagaagaagagggcagagcaggaggccctcactggcga---atgtaaagagctggaaaag 1225
| |||||||||||||||||||||||||| |||||| || | | ||||||| | ||||
Sbjct: 624097 cggaagaagagggcagagcaggaggcccgcactggtgagccacgcgaagagctaggaaag 624156
Query: 1226 aagaacgaagctctgaaagagaaggcagattccttggccaaggagattcagtatctcaaa 1285
||| || || | ||||||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct: 624157 aag---gaggccccgaaagagaa-gcagagtccttggccaaggtgattcaggatctgaaa 624212
Query: 1286 gatctgatagaagaggtccgcaaggcacgggggaagaaacgcgccccctagctgcc--gg 1343
|| |||||||||| ||||| | ||| | | || ||| | ||||||| | || ||| |
Sbjct: 624213 gagctgatagaaggggtcccctgggcgcagcgggagagaagcgccccttggccgccttgc 624272
Query: 1344 gcaggggtgtgcatgtgcttgtacataggctagggctttagctgtgtgttgcaataaatt 1403
||||| ||||| |||||||| ||||||||||||||||||||||||| || |||| |||
Sbjct: 624273 acagggctgtgcgggtgcttgtccataggctagggctttagctgtgtgctgtaatacatt 624332
Query: 1404 attttg 1409
||||||
Sbjct: 624333 attttg 624338
Score = 238 bits (120), Expect = 7e-60
Identities = 400/486 (82%), Gaps = 18/486 (3%)
Strand = Plus / Plus
Query: 931 cagtggcatctgtatgagccctgactcctatctgggctctccccagcacagtccctccac 990
||||||||||||| ||||||| ||| | ||||||||||||||||||||| ||||||||
Sbjct: 692539 cagtggcatctgtgtgagccccgacgc---tctgggctctccccagcacagcccctccac 692595
Query: 991 ctccagggcctctccaagtaggagcttgctctctcccggggccccttgtggttctgtccg 1050
|||| ||| ||||||| || ||||| ||||||||| | ||||| | |||| || ||| |
Sbjct: 692596 ctccgggggctctccacgtcggagcccgctctctccagaggcccgt-gtggctccgtctg 692654
Query: 1051 gcccaaaccctatgatcctcctggagagaaggtggtagcagcaaaagtaaagggtgagaa 1110
|||| |||||||||| ||| |||||||||||||| | ||| |||||| || |||||
Sbjct: 692655 gcccgaaccctatgaccct---ggagagaaggtggtcaccgcagaagtaacggaggagaa 692711
Query: 1111 actagataagaagctgaagaagatggagcagaacaag--acagcagccactcggtaccgc 1168
||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 692712 actggatacgaagctgaagaagatggagcagaacaagctgtagcagccactcggtgccgc 692771
Query: 1169 cagaagaagagggcagagcaggaggccctcactggcga---atgtaaagagctggaaaag 1225
| |||||||||||||||||||||||||| |||||| || | | ||||||| | ||||
Sbjct: 692772 cggaagaagagggcagagcaggaggcccgcactggtgagccacgcgaagagctaggaaag 692831
Query: 1226 aagaacgaagctctgaaagagaaggcagattccttggccaaggagattcagtatctcaaa 1285
||| || || | ||||||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct: 692832 aag---gaggccccgaaagagaa-gcagagtccttggccaaggtgattcaggatctgaaa 692887
Query: 1286 gatctgatagaagaggtccgcaaggcacgggggaagaaacgcgccccctagctgcc--gg 1343
|| |||||||||| ||||| | ||| | | || ||| | ||||||| | || ||| |
Sbjct: 692888 gagctgatagaaggggtcccctgggcgcagcgggagagaagcgccccttggccgccttgc 692947
Query: 1344 gcaggggtgtgcatgtgcttgtacataggctagggctttagctgtgtgttgcaataaatt 1403
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Sbjct: 692948 acagggctgtgcgggtgcttgtccataggctagggctttagctgtgtgctgtaatacatt 693007
Query: 1404 attttg 1409
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Sbjct: 693008 attttg 693013
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,086,538
Number of extensions: 292
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 15
Length of query: 1413
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1392
Effective length of database: 2,808,413,156
Effective search space: 3909311113152
Effective search space used: 3909311113152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)