Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014844.1| actin-related protein 2/3 complex subunit 1B... 738 0.0
Alignment gi|XP_002691952.1| PREDICTED: actin related protein 2/3 complex... 694 0.0
Alignment gi|XP_002700999.1| PREDICTED: actin related protein 2/3 complex... 694 0.0
Alignment gi|NP_001068827.1| actin-related protein 2/3 complex subunit 1A... 549 e-156
Alignment gi|NP_001032559.1| probable cytosolic iron-sulfur protein assem... 66 1e-10
Alignment gi|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked... 61 3e-09
Alignment gi|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked... 61 3e-09
Alignment gi|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1... 60 7e-09
Alignment gi|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked... 60 7e-09
Alignment gi|XP_001788855.2| PREDICTED: zinc finger protein 300-like [Bos... 55 2e-07
>ref|NP_001014844.1| actin-related protein 2/3 complex subunit 1B [Bos taurus].
Length = 372
Score = 738 bits (1905), Expect = 0.0
Identities = 353/371 (95%), Positives = 359/371 (96%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP E KFAVGSGSRVI
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN+VLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSA+GSRVAWVSHDSTVCLADADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLA+TFITE+SLVAAGHDCFPVLFTYD AAG LSFGGRLDVPKQSSQRGLTARE
Sbjct: 241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV+
Sbjct: 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360
Query: 1184 SLESALKDLKI 1216
SLESALKDLKI
Sbjct: 361 SLESALKDLKI 371
>ref|XP_002691952.1| PREDICTED: actin related protein 2/3 complex subunit 1B-like [Bos
taurus].
Length = 370
Score = 694 bits (1792), Expect = 0.0
Identities = 336/371 (90%), Positives = 342/371 (92%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVE ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ HELKEHN QVTG DW
Sbjct: 1 MAYHSFLVESISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQEHELKEHNWQVTGTDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APE+NRIVTCGTDRNA VWTLKGRTWKPTLVILRINRAARCVRWAP E KFAVGSGS VI
Sbjct: 61 APETNRIVTCGTDRNANVWTLKGRTWKPTLVILRINRAARCVRWAPSEKKFAVGSGSPVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSA+GSRVAWVSHDST+CL DADKKMA TL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTLCLVDADKKMAFETL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETL LLA+TFITENSLVAAGHDCF VLFTYD A G LSFGGRL PKQ SQ GLT+RE
Sbjct: 241 ASETLLLLAVTFITENSLVAAGHDCFLVLFTYDSATGKLSFGGRL--PKQRSQHGLTSRE 298
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNS+SQ SVLSGGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 299 RFQNLDKKASSEGSAAAGAGLDSLHKNSISQTSVLSGGKAKCSQFCTTGMDGGMSIWDVK 358
Query: 1184 SLESALKDLKI 1216
SLESALKDLKI
Sbjct: 359 SLESALKDLKI 369
>ref|XP_002700999.1| PREDICTED: actin related protein 2/3 complex subunit 1B [Bos taurus].
Length = 370
Score = 694 bits (1792), Expect = 0.0
Identities = 336/371 (90%), Positives = 342/371 (92%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVE ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ HELKEHN QVTG DW
Sbjct: 1 MAYHSFLVESISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQEHELKEHNWQVTGTDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APE+NRIVTCGTDRNA VWTLKGRTWKPTLVILRINRAARCVRWAP E KFAVGSGS VI
Sbjct: 61 APETNRIVTCGTDRNANVWTLKGRTWKPTLVILRINRAARCVRWAPSEKKFAVGSGSPVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSA+GSRVAWVSHDST+CL DADKKMA TL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTLCLVDADKKMAFETL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETL LLA+TFITENSLVAAGHDCF VLFTYD A G LSFGGRL PKQ SQ GLT+RE
Sbjct: 241 ASETLLLLAVTFITENSLVAAGHDCFLVLFTYDSATGKLSFGGRL--PKQRSQHGLTSRE 298
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNS+SQ SVLSGGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 299 RFQNLDKKASSEGSAAAGAGLDSLHKNSISQTSVLSGGKAKCSQFCTTGMDGGMSIWDVK 358
Query: 1184 SLESALKDLKI 1216
SLESALKDLKI
Sbjct: 359 SLESALKDLKI 369
>ref|NP_001068827.1| actin-related protein 2/3 complex subunit 1A [Bos taurus].
Length = 370
Score = 549 bits (1414), Expect = e-156
Identities = 253/373 (67%), Positives = 313/373 (83%), Gaps = 2/373 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G +WV+ HELKEHNG +TGIDW
Sbjct: 1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGGQWVKAHELKEHNGHITGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 61 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+P
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180
Query: 644 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA 817
A TPWGSKMPFG+LM F S + GWVHGV FSASGSR+AWVSHDSTV +ADA K + V+
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS 240
Query: 818 TLASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTA 997
TL +E LPLL+++F++ENS+VAAGHDC P+LF YD G L+F +LD+PKQS QR ++A
Sbjct: 241 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD-RGCLTFVSKLDIPKQSIQRNMSA 299
Query: 998 RERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 1177
ERF+N+DK+A++E ++LH+NS++Q+S+ K C +FCTTG+DG M+IWD
Sbjct: 300 MERFRNMDKRATTE---DRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD 356
Query: 1178 VKSLESALKDLKI 1216
K+LES+++ L+I
Sbjct: 357 FKTLESSIQGLRI 369
>ref|NP_001032559.1| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Bos
taurus].
Length = 339
Score = 65.9 bits (159), Expect = 1e-10
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 1/213 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGIDWAPESNRIVTCGTD 322
AWN T +A C + V I+ + G+ W+ L E H V + W+P N + + D
Sbjct: 23 AWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 323 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+W ++ + + V WAP N A S + + + ++E D +
Sbjct: 83 ATTCIWKKNEDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DEYE 141
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 682
C + V + WHP+ LLA+ S D +++ R W
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY---------REEEDDWVCC----- 187
Query: 683 LMFESSSSCGWVHGVCFSASGSRVAWVSHDSTV 781
E S W + F SG R+A S D TV
Sbjct: 188 ATLEGHESTVW--SLAFDPSGQRLASCSDDRTV 218
Score = 65.9 bits (159), Expect = 1e-10
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 5/228 (2%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDR 325
AW+ +A + I++K+ + + V L+ H +V + WAP N + TC D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNEDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 326 NAYVWTLKGRTWKPTLVILRIN-RAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+ +VW + + +L + + + V W P + A S + + + +E D WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL--YREEEDDWV 185
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 682
C + STV SL + P+ LA+ S D RI+ Y+ E+ A
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC----------- 234
Query: 683 LMFESSSSCGWVHGVCFSASGSR----VAWVSHDSTVCLADADKKMAV 814
S S W S SR VAW T+ A D + V
Sbjct: 235 ----SGSEASWKCVCTLSGFHSRTIYDVAWCQLTGTLATACGDDAIRV 278
Score = 51.2 bits (121), Expect = 2e-06
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Frame = +2
Query: 281 WAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPQENKFAVGSGSR 457
W P + +CG DR+ +W +G +W V+ R R V W+P N A S S
Sbjct: 24 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLA--SASF 81
Query: 458 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ C +++ D + C + + V S+ W P+ LLA S D S ++ EV+E
Sbjct: 82 DATTCIWKKNEDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDE 136
Query: 638 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL--ADADKKMA 811
E + +S V V + S +A S+D TV L + D +
Sbjct: 137 EDE----------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186
Query: 812 VATLASETLPLLALTFITENSLVAAGHD 895
ATL + +L F +A+ D
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSD 214
>ref|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 2
[Bos taurus].
Length = 376
Score = 60.8 bits (146), Expect = 3e-09
Identities = 68/280 (24%), Positives = 109/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 95 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 151
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + + A V W N FA S I +C Q+
Sbjct: 152 TIIWD--AHTGEAKQLFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 201
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 202 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 258
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 259 IKWSPTGPGTSNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 297
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 298 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 337
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 178 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 234
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 235 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVD 292
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 293 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 337
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 338 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 376
>ref|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
[Bos taurus].
Length = 514
Score = 60.8 bits (146), Expect = 3e-09
Identities = 68/280 (24%), Positives = 109/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQLFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTSNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1XR1 [Bos taurus].
Length = 514
Score = 59.7 bits (143), Expect = 7e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTSNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
[Bos taurus].
Length = 376
Score = 59.7 bits (143), Expect = 7e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 95 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 151
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 152 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 201
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 202 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 258
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 259 IKWSPTGPGTSNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 297
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 298 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 337
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 178 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 234
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 235 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVD 292
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 293 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 337
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 338 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 376
>ref|XP_001788855.2| PREDICTED: zinc finger protein 300-like [Bos taurus].
Length = 823
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 1 PAHEEVAALRGAQSRFGASTAQSPRPWCPE 90
PAHEEVAA RGAQSRFGASTAQSPRP PE
Sbjct: 115 PAHEEVAAQRGAQSRFGASTAQSPRPRRPE 144
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,627,691
Number of extensions: 1918234
Number of successful extensions: 9673
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9530
Number of HSP's successfully gapped: 20
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536872.1| PREDICTED: similar to Actin-related protein 2/3... 739 0.0
Alignment gi|XP_860885.1| PREDICTED: similar to Actin-related protein 2/3... 656 0.0
Alignment gi|XP_536873.2| PREDICTED: similar to actin related protein 2/3... 549 e-156
Alignment gi|XP_853076.1| PREDICTED: similar to Actin-related protein 2/3... 480 e-135
Alignment gi|XP_532950.2| PREDICTED: similar to WD-repeat protein 39 (Cia... 67 6e-11
Alignment gi|XP_851760.1| PREDICTED: similar to WD-repeat protein 39 (Cia... 64 5e-10
Alignment gi|XP_545299.2| PREDICTED: similar to nuclear receptor co-repre... 60 7e-09
Alignment gi|XP_850905.1| PREDICTED: similar to nuclear receptor co-repre... 60 7e-09
Alignment gi|XP_850437.1| PREDICTED: similar to SEC13-like 1 isoform 1 [C... 55 2e-07
Alignment gi|XP_861408.1| PREDICTED: similar to SEC13-like 1 isoform 2 [C... 55 2e-07
>ref|XP_536872.1| PREDICTED: similar to Actin-related protein 2/3 complex subunit 1B
(ARP2/3 complex 41 kDa subunit) (p41-ARC) isoform 1
[Canis familiaris].
Length = 372
Score = 739 bits (1909), Expect = 0.0
Identities = 355/372 (95%), Positives = 358/372 (96%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KWV+VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWVKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPHENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDST+CLADADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTMCLADADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLALTFITENSLVAAGHDCFPVLFTYD GTLS GGRLDVPKQSSQRGLTARE
Sbjct: 241 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDSTTGTLSSGGRLDVPKQSSQRGLTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNSVSQISVLSGGKA+CSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGSVASGSGLDSLHKNSVSQISVLSGGKAECSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALKDLKIK
Sbjct: 361 SLESALKDLKIK 372
>ref|XP_860885.1| PREDICTED: similar to Actin-related protein 2/3 complex subunit 1B
(ARP2/3 complex 41 kDa subunit) (p41-ARC) isoform 2
[Canis familiaris].
Length = 330
Score = 656 bits (1693), Expect = 0.0
Identities = 313/329 (95%), Positives = 315/329 (95%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KWV+VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWVKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPHENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDST+CLADADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTMCLADADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLALTFITENSLVAAGHDCFPVLFTYD GTLS GGRLDVPKQSSQRGLTARE
Sbjct: 241 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDSTTGTLSSGGRLDVPKQSSQRGLTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSV 1090
RFQNLDKKASSEG DSLHKNSV
Sbjct: 301 RFQNLDKKASSEGSVASGSGLDSLHKNSV 329
>ref|XP_536873.2| PREDICTED: similar to actin related protein 2/3 complex subunit 1A
[Canis familiaris].
Length = 434
Score = 549 bits (1415), Expect = e-156
Identities = 253/373 (67%), Positives = 314/373 (84%), Gaps = 2/373 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G++WV+ HELKEHNG +TGIDW
Sbjct: 65 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW 124
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 125 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 184
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+P
Sbjct: 185 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 244
Query: 644 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA 817
A TPWGSKMPFG+LM F S + GWVHGV FSASGSR+AWVSHDSTV +ADA K + V+
Sbjct: 245 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS 304
Query: 818 TLASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTA 997
TL +E LPLL+++F++ENS+VAAGHDC P+LF YD G L+F +LD+PKQS QR ++A
Sbjct: 305 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD-RGCLTFVSKLDIPKQSIQRNMSA 363
Query: 998 RERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 1177
ERF+N+DK+A++E ++LH+NS++Q+S+ K C +FCTTG+DG M+IWD
Sbjct: 364 MERFRNMDKRATTE---DRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD 420
Query: 1178 VKSLESALKDLKI 1216
K+LES+++ L+I
Sbjct: 421 FKTLESSIQGLRI 433
>ref|XP_853076.1| PREDICTED: similar to Actin-related protein 2/3 complex subunit 1B
(ARP2/3 complex 41 kDa subunit) (p41-ARC) [Canis
familiaris].
Length = 324
Score = 480 bits (1236), Expect = e-135
Identities = 264/401 (65%), Positives = 277/401 (69%), Gaps = 1/401 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNH+VHIYEKSG KWV+VHELKEHNGQ
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHQVHIYEKSGAKWVKVHELKEHNGQ------ 54
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
G TWKPTLVILRINRAA CVRWAP ENKFAVGSGSRVI
Sbjct: 55 ----------------------GCTWKPTLVILRINRAACCVRWAPHENKFAVGSGSRVI 92
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCK IKKPI STVLSLDWHPNNVLLA P
Sbjct: 93 SICYFEQENDWWVCKRIKKPICSTVLSLDWHPNNVLLAGA-------------------P 133
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
A S SGSRVAWVSHDST+CLADADKK+AVATL
Sbjct: 134 AT----------------------------STSGSRVAWVSHDSTLCLADADKKIAVATL 165
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLALTFITENSLVAAGHDCFP LFTYD GTLS GGRLDVPKQSSQRGLTAR+
Sbjct: 166 ASETLPLLALTFITENSLVAAGHDCFPALFTYDSTTGTLSSGGRLDVPKQSSQRGLTARK 225
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG-GMSIWDV 1180
RFQNLDKKASSEG DS+HKNSVSQIS +G A+ S + + MSIWDV
Sbjct: 226 RFQNLDKKASSEGSVAPGSGLDSVHKNSVSQISGSAG--ARLSAHSSAPQEWMSMSIWDV 283
Query: 1181 KSLESALKDLKIK*PVRRLRPHPSCWGKRVGKAKDRCAECF 1303
KSLESALK+LKIK P+R + P GK V KAK R AECF
Sbjct: 284 KSLESALKNLKIKWPMRNMLPSSPLLGKGVRKAKGRFAECF 324
>ref|XP_532950.2| PREDICTED: similar to WD-repeat protein 39 (Ciao 1 protein) isoform
1 [Canis familiaris].
Length = 339
Score = 66.6 bits (161), Expect = 6e-11
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDR 325
AW+ +A + I++K+ + + V L+ H +V + WAP N + TC D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 326 NAYVWTLKGRTWKPTLVILRIN-RAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+ +VW + + +L + + + V W P + A S + + + +E D WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL--YREEEDDWV 185
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
C + STV SL + P+ LA+ S D RI+ Y+ + E+
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPDNEQ 230
Score = 66.2 bits (160), Expect = 8e-11
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 1/213 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGIDWAPESNRIVTCGTD 322
AWN T +A C + V I+ G+ W+ L E H V + W+P N + + D
Sbjct: 23 AWNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 323 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+W ++ + + V WAP N A S + + + ++E D +
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DEYE 141
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 682
C + V + WHP+ LLA+ S D +++ R W
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY---------REEEDDWVCC----- 187
Query: 683 LMFESSSSCGWVHGVCFSASGSRVAWVSHDSTV 781
E S W + F SG R+A S D TV
Sbjct: 188 ATLEGHESTVW--SLAFDPSGQRLASCSDDRTV 218
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Frame = +2
Query: 281 WAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPQENKFAVGSGSR 457
W P + +CG DR +W +G +W V+ R R V W+P N A S S
Sbjct: 24 WNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA--SASF 81
Query: 458 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ C +++ D + C + + V S+ W P+ LLA S D S ++ EV+E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDE 136
Query: 638 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL--ADADKKMA 811
E + +S V V + S +A S+D TV L + D +
Sbjct: 137 EDE----------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186
Query: 812 VATLASETLPLLALTFITENSLVAAGHD 895
ATL + +L F +A+ D
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSD 214
>ref|XP_851760.1| PREDICTED: similar to WD-repeat protein 39 (Ciao 1 protein) isoform
2 [Canis familiaris].
Length = 351
Score = 63.5 bits (153), Expect = 5e-10
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDR 325
AW+ +A + I++K+ + + V L+ H +V + WAP N + TC D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 326 NAYVWTLKGRTWKPTLVILRINRAARCVR-------------WAPQENKFAVGSGSRVIS 466
+ +VW + ++ L + CV W P + A S +
Sbjct: 128 SVWVWEGESKSISMELGTIDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 187
Query: 467 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ + +E D WVC + STV SL + P+ LA+ S D RI+ Y+ + E+
Sbjct: 188 L--YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPDNEQ 242
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 12/224 (5%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGIDWAPESNRIVTCGTD 322
AWN T +A C + V I+ G+ W+ L E H V + W+P N + + D
Sbjct: 23 AWNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 323 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFE------- 481
+W ++ + + V WAP N A S + + + E
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEGESKSISME 142
Query: 482 ----QENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAP 649
E D + C + V + WHP+ LLA+ S D +++ R
Sbjct: 143 LGTIDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY---------REEE 193
Query: 650 TPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTV 781
W E S W + F SG R+A S D TV
Sbjct: 194 DDWVCC-----ATLEGHESTVW--SLAFDPSGQRLASCSDDRTV 230
Score = 50.1 bits (118), Expect = 6e-06
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 5/210 (2%)
Frame = +2
Query: 281 WAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPQENKFAVGSGSR 457
W P + +CG DR +W +G +W V+ R R V W+P N A S S
Sbjct: 24 WNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA--SASF 81
Query: 458 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ C +++ D + C + + V S+ W P+ LLA S D S ++ E E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEGES 136
Query: 638 RPAPTPWGS--KMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL--ADADKK 805
+ G+ + E + +S V V + S +A S+D TV L + D
Sbjct: 137 KSISMELGTIDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 196
Query: 806 MAVATLASETLPLLALTFITENSLVAAGHD 895
+ ATL + +L F +A+ D
Sbjct: 197 VCCATLEGHESTVWSLAFDPSGQRLASCSD 226
>ref|XP_545299.2| PREDICTED: similar to nuclear receptor co-repressor/HDAC3 complex
subunit isoform 1 [Canis familiaris].
Length = 514
Score = 59.7 bits (143), Expect = 7e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTNNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 53.9 bits (128), Expect = 4e-07
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|XP_850905.1| PREDICTED: similar to nuclear receptor co-repressor/HDAC3 complex
subunit isoform 2 [Canis familiaris].
Length = 514
Score = 59.7 bits (143), Expect = 7e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTNNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 53.9 bits (128), Expect = 4e-07
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|XP_850437.1| PREDICTED: similar to SEC13-like 1 isoform 1 [Canis familiaris].
Length = 322
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +2
Query: 164 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPE--SNRIVTCGTDRNAYV 337
T++A C ++ V I++ + + +L+ H G V + WA N + +C DR +
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 338 WTLKGRTWKPTLVILRINRAARCVRWAPQENK--FAVGSGSRVISICYFEQENDWWVCK 508
W + TW+ T + + V WAP + A GS IS+ + E W V K
Sbjct: 86 WKEENGTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Score = 52.0 bits (123), Expect = 2e-06
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +2
Query: 209 EKSGNKWVQVHELKEHNGQVTGIDWAPE----SNRIVTCGTDRNAYVWT---LKGRTWKP 367
E+ +W + +L+ H+ V + WAP ++ I +C D ++WT G TW P
Sbjct: 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDTSGNTWSP 255
Query: 368 TLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVC 505
L + + N V W+ N AV G +++ + E + WVC
Sbjct: 256 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWVC 299
>ref|XP_861408.1| PREDICTED: similar to SEC13-like 1 isoform 2 [Canis familiaris].
Length = 308
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +2
Query: 164 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPE--SNRIVTCGTDRNAYV 337
T++A C ++ V I++ + + +L+ H G V + WA N + +C DR +
Sbjct: 12 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 71
Query: 338 WTLKGRTWKPTLVILRINRAARCVRWAPQENK--FAVGSGSRVISICYFEQENDWWVCK 508
W + TW+ T + + V WAP + A GS IS+ + E W V K
Sbjct: 72 WKEENGTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 130
Score = 52.0 bits (123), Expect = 2e-06
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +2
Query: 209 EKSGNKWVQVHELKEHNGQVTGIDWAPE----SNRIVTCGTDRNAYVWT---LKGRTWKP 367
E+ +W + +L+ H+ V + WAP ++ I +C D ++WT G TW P
Sbjct: 182 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDTSGNTWSP 241
Query: 368 TLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVC 505
L + + N V W+ N AV G +++ + E + WVC
Sbjct: 242 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWVC 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,956,236
Number of extensions: 1936531
Number of successful extensions: 9709
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9592
Number of HSP's successfully gapped: 21
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005711.1| actin-related protein 2/3 complex subunit 1B [H... 743 0.0
Alignment gi|NP_006400.2| actin-related protein 2/3 complex subunit 1A is... 549 e-156
Alignment gi|NP_001177925.1| actin-related protein 2/3 complex subunit 1A... 510 e-144
Alignment gi|NP_004795.1| probable cytosolic iron-sulfur protein assembly... 65 1e-10
Alignment gi|NP_078941.2| F-box-like/WD repeat-containing protein TBL1XR1... 60 7e-09
Alignment gi|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1... 54 4e-07
Alignment gi|NP_001132939.1| F-box-like/WD repeat-containing protein TBL1... 54 4e-07
Alignment gi|NP_001132938.1| F-box-like/WD repeat-containing protein TBL1... 54 4e-07
Alignment gi|NP_005638.1| F-box-like/WD repeat-containing protein TBL1X i... 54 4e-07
Alignment gi|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [... 54 5e-07
>ref|NP_005711.1| actin-related protein 2/3 complex subunit 1B [Homo sapiens].
Length = 372
Score = 743 bits (1919), Expect = 0.0
Identities = 357/372 (95%), Positives = 359/372 (96%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KW +VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLALTFIT+NSLVAAGHDCFPVLFTYD AAG LSFGGRLDVPKQSSQRGLTARE
Sbjct: 241 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALKDLKIK
Sbjct: 361 SLESALKDLKIK 372
>ref|NP_006400.2| actin-related protein 2/3 complex subunit 1A isoform 1 [Homo
sapiens].
Length = 370
Score = 549 bits (1415), Expect = e-156
Identities = 253/373 (67%), Positives = 314/373 (84%), Gaps = 2/373 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G++WV+ HELKEHNG +TGIDW
Sbjct: 1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 61 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+P
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180
Query: 644 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA 817
A TPWGSKMPFG+LM F S + GWVHGV FSASGSR+AWVSHDSTV +ADA K + V+
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS 240
Query: 818 TLASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTA 997
TL +E LPLL+++F++ENS+VAAGHDC P+LF YD G L+F +LD+PKQS QR ++A
Sbjct: 241 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD-RGCLTFVSKLDIPKQSIQRNMSA 299
Query: 998 RERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 1177
ERF+N+DK+A++E ++LH+NS++Q+S+ K C +FCTTG+DG M+IWD
Sbjct: 300 MERFRNMDKRATTE---DRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD 356
Query: 1178 VKSLESALKDLKI 1216
K+LES+++ L+I
Sbjct: 357 FKTLESSIQGLRI 369
>ref|NP_001177925.1| actin-related protein 2/3 complex subunit 1A isoform 2 [Homo
sapiens].
Length = 356
Score = 510 bits (1313), Expect = e-144
Identities = 237/351 (67%), Positives = 294/351 (83%), Gaps = 2/351 (0%)
Frame = +2
Query: 170 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLK 349
IA+ PNNHEVHIY+K+G++WV+ HELKEHNG +TGIDWAP+S+RIVTCG DRNAYVW+ K
Sbjct: 9 IALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQK 68
Query: 350 GRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 529
WKPTLVILRINRAA V+W+P ENKFAVGSG+R+IS+CYFE ENDWWV KHIKKPIR
Sbjct: 69 DGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIR 128
Query: 530 STVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM--FESSS 703
STVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+PA TPWGSKMPFG+LM F S
Sbjct: 129 STVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSG 188
Query: 704 SCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLALTFITENSLVA 883
+ GWVHGV FSASGSR+AWVSHDSTV +ADA K + V+TL +E LPLL+++F++ENS+VA
Sbjct: 189 TGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVA 248
Query: 884 AGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGXXXXXXX 1063
AGHDC P+LF YD G L+F +LD+PKQS QR ++A ERF+N+DK+A++E
Sbjct: 249 AGHDCCPMLFNYDD-RGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTE---DRNTA 304
Query: 1064 XDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKI 1216
++LH+NS++Q+S+ K C +FCTTG+DG M+IWD K+LES+++ L+I
Sbjct: 305 LETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 355
>ref|NP_004795.1| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Homo
sapiens].
Length = 339
Score = 65.5 bits (158), Expect = 1e-10
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 1/213 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGIDWAPESNRIVTCGTD 322
AWN T +A C + + I+ G+ W+ L E H V + W+P N + + D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 323 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+W ++ + + V WAP N A S + + + ++E D +
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DEYE 141
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 682
C + V + WHP+ LLA+ S D +++ R W
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY---------REEEDDWVCC----- 187
Query: 683 LMFESSSSCGWVHGVCFSASGSRVAWVSHDSTV 781
E S W + F SG R+A S D TV
Sbjct: 188 ATLEGHESTVW--SLAFDPSGQRLASCSDDRTV 218
Score = 65.1 bits (157), Expect = 2e-10
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDR 325
AW+ +A + I++K+ + + V L+ H +V + WAP N + TC D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 326 NAYVWTLKGRTWKPTLVILRIN-RAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+ +VW + + +L + + + V W P + A S + + + +E D WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL--YREEEDDWV 185
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
C + STV SL + P+ LA+ S D RI+ Y+ E+
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Score = 50.4 bits (119), Expect = 4e-06
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Frame = +2
Query: 281 WAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPQENKFAVGSGSR 457
W P + +CG DR +W +G +W V+ R R V W+P N A S S
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA--SASF 81
Query: 458 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ C +++ D + C + + V S+ W P+ LLA S D S ++ EV+E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDE 136
Query: 638 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL--ADADKKMA 811
E + +S V V + S +A S+D TV L + D +
Sbjct: 137 EDE----------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186
Query: 812 VATLASETLPLLALTFITENSLVAAGHD 895
ATL + +L F +A+ D
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSD 214
>ref|NP_078941.2| F-box-like/WD repeat-containing protein TBL1XR1 [Homo sapiens].
Length = 514
Score = 59.7 bits (143), Expect = 7e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTNNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 53.9 bits (128), Expect = 4e-07
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1X isoform b [Homo
sapiens].
Length = 526
Score = 53.9 bits (128), Expect = 4e-07
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 329 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 386
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 387 IWSMKQEVCIHDL--QAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERG 444
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D KC +I W ++ G
Sbjct: 445 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFD-KC----VHI-----------WNTQS--G 486
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
L+ S G + VC++A G +V + D +VC+ D K
Sbjct: 487 NLV-HSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 526
>ref|NP_001132939.1| F-box-like/WD repeat-containing protein TBL1X isoform b [Homo
sapiens].
Length = 526
Score = 53.9 bits (128), Expect = 4e-07
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 329 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 386
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 387 IWSMKQEVCIHDL--QAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERG 444
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D KC +I W ++ G
Sbjct: 445 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFD-KC----VHI-----------WNTQS--G 486
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
L+ S G + VC++A G +V + D +VC+ D K
Sbjct: 487 NLV-HSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 526
>ref|NP_001132938.1| F-box-like/WD repeat-containing protein TBL1X isoform a [Homo
sapiens].
Length = 577
Score = 53.9 bits (128), Expect = 4e-07
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 380 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 437
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 438 IWSMKQEVCIHDL--QAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERG 495
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D KC +I W ++ G
Sbjct: 496 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFD-KC----VHI-----------WNTQS--G 537
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
L+ S G + VC++A G +V + D +VC+ D K
Sbjct: 538 NLV-HSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 577
>ref|NP_005638.1| F-box-like/WD repeat-containing protein TBL1X isoform a [Homo
sapiens].
Length = 577
Score = 53.9 bits (128), Expect = 4e-07
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 380 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 437
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K L N+ ++W+P + + + +++ F+ W
Sbjct: 438 IWSMKQEVCIHDL--QAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERG 495
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D KC +I W ++ G
Sbjct: 496 VCTHTLTKHQEPVYSVAFSPDGKYLASGSFD-KC----VHI-----------WNTQS--G 537
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
L+ S G + VC++A G +V + D +VC+ D K
Sbjct: 538 NLV-HSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 577
>ref|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
Length = 522
Score = 53.5 bits (127), Expect = 5e-07
Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 16/263 (6%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN D T +A+ + I+ ++GN L +H G + + W + N +++ G D+
Sbjct: 243 WNSDGTLLAMGSYDGFARIWTENGNL---ASTLGQHKGPIFALKWNKKGNYVLSAGVDKT 299
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQEN-KFAVGSGSRVISICYFEQENDWWVC 505
+W T + + A V W Q N FA S I +C C
Sbjct: 300 TIIW--DAHTGEAKQQFPFHSAPALDVDW--QNNMTFASCSTDMCIHVCRLG-------C 348
Query: 506 KHIKKPIR---STVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE-R 640
H K + + V ++ W P+ +LLA+ S D +I+S A+ KE+ +
Sbjct: 349 DHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIK 408
Query: 641 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVAT 820
+PT + P +M S+ S DSTV L D ++ + T
Sbjct: 409 WSPTGPATSNPNSSIMLASA---------------------SFDSTVRLWDVEQGVCTHT 447
Query: 821 LASETLPLLALTFITENSLVAAG 889
L P+ ++ F + +A+G
Sbjct: 448 LMKHQEPVYSVAFSPDGKYLASG 470
Score = 51.2 bits (121), Expect = 3e-06
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + V+ + H +V I W P + +C D
Sbjct: 326 WQNNMT-FASCSTDMCIHVCRLGCDHPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMT 382
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L ++ ++W+P + + S +++ F+ W
Sbjct: 383 LKIWSMKQDACVHDL--QAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVE 440
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
VC H + V S+ + P+ LA+GS D I++ T GS
Sbjct: 441 QGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWN------------TQSGS--- 485
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLAD 793
+ S G + VC++A G +V + D +VC+ D
Sbjct: 486 ----LVHSYQGTGGIFEVCWNARGDKVGASASDGSVCVLD 521
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,515,578
Number of extensions: 1882233
Number of successful extensions: 9340
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 9188
Number of HSP's successfully gapped: 22
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075631.2| actin-related protein 2/3 complex subunit 1B [M... 739 0.0
Alignment gi|XP_486686.1| PREDICTED: actin-related protein 2/3 complex su... 724 0.0
Alignment gi|XP_910711.1| PREDICTED: actin-related protein 2/3 complex su... 724 0.0
Alignment gi|NP_062741.1| actin-related protein 2/3 complex subunit 1A [M... 546 e-155
Alignment gi|NP_079572.2| probable cytosolic iron-sulfur protein assembly... 66 6e-11
Alignment gi|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1... 60 6e-09
Alignment gi|NP_077168.2| protein SEC13 homolog [Mus musculus]. 55 2e-07
Alignment gi|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [... 52 1e-06
>ref|NP_075631.2| actin-related protein 2/3 complex subunit 1B [Mus musculus].
Length = 372
Score = 739 bits (1907), Expect = 0.0
Identities = 355/372 (95%), Positives = 358/372 (96%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KW +VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL DADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLA+TFITENSLVAAGHDCFPVLFTYD AA TLSFGGRLDVPKQSSQRG+TARE
Sbjct: 241 ASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSSQRGMTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALKDLKIK
Sbjct: 361 SLESALKDLKIK 372
>ref|XP_486686.1| PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Mus
musculus].
Length = 372
Score = 724 bits (1870), Expect = 0.0
Identities = 347/372 (93%), Positives = 353/372 (94%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KW +VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APE NRIVTCGTD NAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APEHNRIVTCGTDSNAYVWTLKGRTWKPTLVILRINRAARCVRWAPSENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPI STVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPISSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL DADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLA+TFITENSLVAAGHDCFPVLFTYD AA TLSFGGRLDVPKQSSQRG+ ARE
Sbjct: 241 ASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSSQRGMAARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNS++QISVL GGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGGAATGAGLDSLHKNSINQISVLIGGKAKCSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALK+LKIK
Sbjct: 361 SLESALKNLKIK 372
>ref|XP_910711.1| PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Mus
musculus].
Length = 372
Score = 724 bits (1870), Expect = 0.0
Identities = 347/372 (93%), Positives = 353/372 (94%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG KW +VHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APE NRIVTCGTD NAYVWTLKGRTWKPTLVILRINRAARCVRWAP ENKFAVGSGSRVI
Sbjct: 61 APEHNRIVTCGTDSNAYVWTLKGRTWKPTLVILRINRAARCVRWAPSENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPI STVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPISSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL DADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLA+TFITENSLVAAGHDCFPVLFTYD AA TLSFGGRLDVPKQSSQRG+ ARE
Sbjct: 241 ASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSSQRGMAARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNS++QISVL GGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGGAATGAGLDSLHKNSINQISVLIGGKAKCSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALK+LKIK
Sbjct: 361 SLESALKNLKIK 372
>ref|NP_062741.1| actin-related protein 2/3 complex subunit 1A [Mus musculus].
Length = 370
Score = 546 bits (1408), Expect = e-155
Identities = 252/373 (67%), Positives = 313/373 (83%), Gaps = 2/373 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G++W + HELKEHNG +TGIDW
Sbjct: 1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 61 APKSDRIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+P
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180
Query: 644 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA 817
A TPWGSKMPFG+LM F S + GWVHGV FSASG+R+AWVSHDSTV +ADA K + V+
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVSVADASKSVQVS 240
Query: 818 TLASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTA 997
TL +E LPLL+++F++ENS+VAAGHDC P+LF YD G L+F +LDVPKQS QR ++A
Sbjct: 241 TLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD-RGCLTFVSKLDVPKQSIQRNMSA 299
Query: 998 RERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 1177
ERF+N+DK+A++E ++LH+NS++Q+S+ K C +FCTTG+DG M+IWD
Sbjct: 300 MERFRNMDKRATTE---DRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD 356
Query: 1178 VKSLESALKDLKI 1216
K+LES+++ L+I
Sbjct: 357 FKTLESSIQGLRI 369
>ref|NP_079572.2| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Mus
musculus].
Length = 339
Score = 66.2 bits (160), Expect = 6e-11
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 1/213 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGIDWAPESNRIVTCGTD 322
AWN T +A C + ++ I+ G+ W+ L E H V + W+P N + + D
Sbjct: 23 AWNPSGTLLASCGGDRKIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 323 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+W ++ + + V WAP N A S + + + ++E D +
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DEYE 141
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 682
C + V + WHP+ LLA+ S D ++ Y +E ++ W
Sbjct: 142 CVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKL---YQEEGDD------WVCC----- 187
Query: 683 LMFESSSSCGWVHGVCFSASGSRVAWVSHDSTV 781
E S W + F SG R+A S D TV
Sbjct: 188 ATLEGHESTVW--SIAFDPSGQRLASCSDDRTV 218
Score = 65.1 bits (157), Expect = 1e-10
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Frame = +2
Query: 146 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDR 325
AW+ +A + I++K+ + + V L+ H +V + WAP N + TC D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 326 NAYVWTL-KGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWV 502
+ +VW + + ++ V+ + + V W P + A S + + +++E D WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKL--YQEEGDDWV 185
Query: 503 CKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
C + STV S+ + P+ LA+ S D RI+ Y+ E+
Sbjct: 186 CCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Frame = +2
Query: 281 WAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPQENKFAVGSGSR 457
W P + +CG DR +W +G +W V+ R R V W+P N A S S
Sbjct: 24 WNPSGTLLASCGGDRKIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA--SASF 81
Query: 458 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEE 637
+ C +++ D + C + + V S+ W P+ LLA S D S ++ EV+E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDE 136
Query: 638 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL--ADADKKMA 811
E + SS V V + S +A S+D TV L + D +
Sbjct: 137 EDE----------YECVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKLYQEEGDDWVC 186
Query: 812 VATLASETLPLLALTFITENSLVAAGHD 895
ATL + ++ F +A+ D
Sbjct: 187 CATLEGHESTVWSIAFDPSGQRLASCSD 214
>ref|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1 [Mus musculus].
Length = 514
Score = 59.7 bits (143), Expect = 6e-09
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 20/280 (7%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN + T +A + I+ K GN L +H G + + W + N I++ G D+
Sbjct: 233 WNSEGTLLATGSYDGFARIWTKDGNL---ASTLGQHKGPIFALKWNKKGNFILSAGVDKT 289
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W N FA S I +C Q+
Sbjct: 290 TIIWD--AHTGEAKQQFPFHSAPALDVDWQ-SNNTFASCSTDMCIHVCKLGQD------- 339
Query: 509 HIKKPIRS------TVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE 637
+PI++ V ++ W P LLA+ S D +I+S A+ KE+
Sbjct: 340 ---RPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYT 396
Query: 638 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAV 814
+ +PT G+ P LM S+S DSTV L D D+ + +
Sbjct: 397 IKWSPTGPGTNNPNANLMLASAS---------------------FDSTVRLWDVDRGICI 435
Query: 815 ATLASETLPLLALTFITENSLVAAG--HDCFPVLFTYDGA 928
TL P+ ++ F + +A+G C + T GA
Sbjct: 436 HTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGA 475
Score = 53.9 bits (128), Expect = 3e-07
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
W + T A C + +H+ + ++ ++ + H +V I W P N + +C D
Sbjct: 316 WQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQ--GHTNEVNAIKWDPTGNLLASCSDDMT 372
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW--- 499
+W++K L N+ ++W+P + + +++ F+ W
Sbjct: 373 LKIWSMKQDNCVHDL--QAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVD 430
Query: 500 --VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 673
+C H + V S+ + P+ LA+GS D I++ T G+
Sbjct: 431 RGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWN------------TQTGA--- 475
Query: 674 FGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A+G +V + D +VC+ D K
Sbjct: 476 ----LVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
>ref|NP_077168.2| protein SEC13 homolog [Mus musculus].
Length = 322
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +2
Query: 164 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPE--SNRIVTCGTDRNAYV 337
T++A C ++ V I++ + + +L+ H G V + WA N + +C DR +
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 338 WTLKGRTWKPTLVILRINRAARCVRWAPQENK--FAVGSGSRVISICYFEQENDWWVCK 508
W + TW+ T + + V WAP + A GS IS+ + E W V K
Sbjct: 86 WKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Score = 49.7 bits (117), Expect = 6e-06
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Frame = +2
Query: 209 EKSGNKWVQVHELKEHNGQVTGIDWAPE----SNRIVTCGTDRNAYVWT---LKGRTWKP 367
E+ +W + +L+ H+ V + WAP ++ I +C D ++WT G W P
Sbjct: 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSP 255
Query: 368 TLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVC 505
L + + N V W+ N AV G +++ + E + WVC
Sbjct: 256 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWVC 299
>ref|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [Mus musculus].
Length = 527
Score = 52.0 bits (123), Expect = 1e-06
Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 15/262 (5%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN D T +A + I+ + GN L +H G + + W + N I++ G D+
Sbjct: 246 WNSDGTLLATGSYDGFARIWTEDGNL---ASTLGQHKGPIFALKWNKKGNYILSAGVDKT 302
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W FA S I +C C
Sbjct: 303 TIIW--DAHTGEAKQQFPFHSAPALDVDW-QNNTTFASCSTDMCIHVCRLG-------CD 352
Query: 509 HIKKPIR---STVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE-RP 643
K + + V ++ W P+ +LLA+ S D +I+S A+ KE+ +
Sbjct: 353 RPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKW 412
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
+PT + P +M S+ S DSTV L D ++ + + TL
Sbjct: 413 SPTGPATSNPNSNIMLASA---------------------SFDSTVRLWDVERGVCIHTL 451
Query: 824 ASETLPLLALTFITENSLVAAG 889
P+ ++ F + +A+G
Sbjct: 452 TKHQEPVYSVAFSPDGKYLASG 473
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 330 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 387
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K L ++ ++W+P + + + +++ F+ W
Sbjct: 388 IWSMKQDACVHDLQAH--SKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERG 445
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D I++ T GS
Sbjct: 446 VCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWN------------TQSGS----- 488
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A G +V + D +VC+ D K
Sbjct: 489 --LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 527
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,384,928
Number of extensions: 1554337
Number of successful extensions: 7357
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7182
Number of HSP's successfully gapped: 13
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127828.1| actin-related protein 2/3 complex subunit 1B... 757 0.0
Alignment gi|NP_001127827.1| actin-related protein 2/3 complex subunit 1A... 548 e-156
Alignment gi|XP_003354510.1| PREDICTED: actin-related protein 2/3 complex... 305 6e-83
Alignment gi|XP_003124371.2| PREDICTED: zinc finger protein with KRAB and... 90 4e-18
Alignment gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p... 53 4e-07
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 49 1e-05
>ref|NP_001127828.1| actin-related protein 2/3 complex subunit 1B [Sus scrofa].
Length = 372
Score = 757 bits (1955), Expect = 0.0
Identities = 364/372 (97%), Positives = 364/372 (97%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI
Sbjct: 61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 240
Query: 824 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 1003
ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE
Sbjct: 241 ASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTARE 300
Query: 1004 RFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 1183
RFQNLDKKASSEG DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
Sbjct: 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK 360
Query: 1184 SLESALKDLKIK 1219
SLESALKDLKIK
Sbjct: 361 SLESALKDLKIK 372
>ref|NP_001127827.1| actin-related protein 2/3 complex subunit 1A [Sus scrofa].
Length = 370
Score = 548 bits (1411), Expect = e-156
Identities = 253/373 (67%), Positives = 313/373 (83%), Gaps = 2/373 (0%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G++WV+ HELKEHNG +TGIDW
Sbjct: 1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 61 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 643
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR+FSAYIKEV+E+P
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180
Query: 644 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA 817
A TPWGSKMPFG+LM F S + GWVHGV FSASGSR+ WVSHDSTV +ADA K + V+
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLTWVSHDSTVSVADASKSVQVS 240
Query: 818 TLASETLPLLALTFITENSLVAAGHDCFPVLFTYDGAAGTLSFGGRLDVPKQSSQRGLTA 997
TL +E LPLL+++F++ENS+VAAGHDC P+LF YD G L+F +LD+PKQS QR L+A
Sbjct: 241 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD-RGCLTFVSKLDLPKQSIQRNLSA 299
Query: 998 RERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 1177
ERF+N+DK+A++E ++LH+NS++Q+S+ K C +FCTTG+DG M+IWD
Sbjct: 300 MERFRNMDKRATTE---DRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD 356
Query: 1178 VKSLESALKDLKI 1216
K+LES+++ L+I
Sbjct: 357 FKTLESSIQGLRI 369
>ref|XP_003354510.1| PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Sus
scrofa].
Length = 167
Score = 305 bits (780), Expect = 6e-83
Identities = 133/167 (79%), Positives = 152/167 (91%)
Frame = +2
Query: 104 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 283
M+ H FL+EPI+CHAWN+DRTQIA+ PNNHEVHIY+K+G++WV+ HELKEHNG +TGIDW
Sbjct: 1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW 60
Query: 284 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVI 463
AP+S+RIVTCG DRNAYVW+ K WKPTLVILRINRAA V+W+P ENKFAVGSG+R+I
Sbjct: 61 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120
Query: 464 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR 604
S+CYFE ENDWWV KHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCR 167
>ref|XP_003124371.2| PREDICTED: zinc finger protein with KRAB and SCAN domains 5-like [Sus
scrofa].
Length = 199
Score = 89.7 bits (221), Expect = 4e-18
Identities = 54/83 (65%), Positives = 58/83 (69%)
Frame = +2
Query: 971 QSSQRGLTARERFQNLDKKASSEGXXXXXXXXDSLHKNSVSQISVLSGGKAKCSQFCTTG 1150
+S QR L R R QNL+ + S G + L QISVLSGGKAKCSQFCTTG
Sbjct: 124 ESIQRELEER-RQQNLEGR-SGAGLRARRHLLEEL-----DQISVLSGGKAKCSQFCTTG 176
Query: 1151 MDGGMSIWDVKSLESALKDLKIK 1219
MDGGMSIWDVKSLESALKDLKIK
Sbjct: 177 MDGGMSIWDVKSLESALKDLKIK 199
>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
scrofa].
Length = 529
Score = 53.1 bits (126), Expect = 4e-07
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Frame = +2
Query: 155 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAY 334
++ T A C + +H+ ++ V+ + H +V I W P + +C D
Sbjct: 332 QNNTTFASCSTDMCIHVCRLGCDRPVKTFQ--GHTNEVNAIKWDPSGMLLASCSDDMTLK 389
Query: 335 VWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWW----- 499
+W++K T L ++ ++W+P + + + +++ F+ W
Sbjct: 390 IWSMKQDTCVHDL--QAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERG 447
Query: 500 VCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 679
VC H + V S+ + P+ LA+GS D I++ T GS
Sbjct: 448 VCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWN------------TQSGS----- 490
Query: 680 ELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADK 802
+ S G + VC++A G +V + D +VC+ D K
Sbjct: 491 --LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 529
Score = 52.0 bits (123), Expect = 9e-07
Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 15/262 (5%)
Frame = +2
Query: 149 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPESNRIVTCGTDRN 328
WN D T +A + I+ + GN L +H G + + W + N I++ G D+
Sbjct: 248 WNSDGTLLATGSYDGFARIWTEDGNL---ASTLGQHKGPIFALKWNKKGNYILSAGVDKT 304
Query: 329 AYVWTLKGRTWKPTLVILRINRAARCVRWAPQENKFAVGSGSRVISICYFEQENDWWVCK 508
+W T + + A V W FA S I +C C
Sbjct: 305 TIIW--DAHTGEAKQQFPFHSAPALDVDW-QNNTTFASCSTDMCIHVCRLG-------CD 354
Query: 509 HIKKPIR---STVLSLDWHPNNVLLAAGSCDFKCRIFS-----------AYIKEVEE-RP 643
K + + V ++ W P+ +LLA+ S D +I+S A+ KE+ +
Sbjct: 355 RPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKW 414
Query: 644 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL 823
+PT + P +M S+ S DSTV L D ++ + + TL
Sbjct: 415 SPTGPATSNPNSNIMLASA---------------------SFDSTVRLWDVERGVCIHTL 453
Query: 824 ASETLPLLALTFITENSLVAAG 889
P+ ++ F + +A+G
Sbjct: 454 TKHQEPVYSVAFSPDGKYLASG 475
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 48.5 bits (114), Expect = 1e-05
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 24/238 (10%)
Frame = +2
Query: 248 KEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPQE 427
K HN V ++P V+ G DR A +W ++P + C R+ P
Sbjct: 444 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATD--HYQPLRIFAGHLADVNCTRFHPNS 501
Query: 428 NKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRI 607
N A GS R + + N C I + + SL + PN LA G+ D + +
Sbjct: 502 NYVATGSADRTVRLWDVLNGN----CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLL 557
Query: 608 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCL 787
+ G + GEL + + C + FS G +A S D+TV L
Sbjct: 558 WDI--------------GHGLMVGELKGHTDTVC----SLRFSRDGEILASGSMDNTVRL 599
Query: 788 ADADK------------------------KMAVATLASETLPLLALTFITENSLVAAG 889
DA K ++ + T +++ P++ L F N ++AAG
Sbjct: 600 WDAVKAFEDLETDDITTXXXXXXXXENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAG 657
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,741,507
Number of extensions: 1272210
Number of successful extensions: 6404
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6355
Number of HSP's successfully gapped: 7
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007105
(1545 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 444 e-122
>Sscrofa_Chr03
|| Length = 144787322
Score = 444 bits (224), Expect = e-122
Identities = 230/232 (99%)
Strand = Plus / Minus
Query: 271 aggcattgactgggcccctgagagtaaccgcatcgtgacttgcggcacagaccgcaacgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6527158 aggcattgactgggcccctgagagtaaccgcatcgtgacttgcggcacagaccgcaacgc 6527099
Query: 331 ctacgtgtggacgctgaagggccgcacgtggaagcctacccttgtcatcctgcgcatcaa 390
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6527098 ctacgtgtggacgctgaagggccgcacgtggaagcccacccttgtcatcctgcgcatcaa 6527039
Query: 391 ccgtgctgctcgctgtgtgcgctgggccccccaggagaacaagttcgctgtgggcagtgg 450
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6527038 ccgcgctgctcgctgtgtgcgctgggccccccaggagaacaagttcgctgtgggcagtgg 6526979
Query: 451 ctcccgtgtcatctccatctgctattttgagcaggaaaatgactggtgggtg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6526978 ctcccgtgtcatctccatctgctattttgagcaggaaaatgactggtgggtg 6526927
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 603 ggatcttctcagcctacatcaaggaggtggaggagcggccagcacccaccccctggggct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6525054 ggatcttctcagcctacatcaaggaggtggaggagcggccagcacccaccccctggggct 6524995
Query: 663 ccaagatgcccttcggggagctgatgtttgagtccagcagtagctgcggctgggtgcacg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6524994 ccaagatgcccttcggggagctgatgtttgagtccagcagtagctgcggctgggtgcacg 6524935
Query: 723 gcgtctgcttttcagccagtggtagccgcgtggcctgggtcagtcatgacagcaccgtgt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6524934 gcgtctgcttttcagccagtggtagccgcgtggcctgggtcagtcatgacagcaccgtgt 6524875
Query: 783 gcctggctgatgccgacaagaagatggc 810
||||||||||||||||||||||||||||
Sbjct: 6524874 gcctggctgatgccgacaagaagatggc 6524847
Score = 385 bits (194), Expect = e-104
Identities = 226/242 (93%)
Strand = Plus / Minus
Query: 1182 agagcctggagtcagccttgaaggacctcaagatcaaatgacccgtgaggcgtctgcgcc 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712514 agagcctggagtcagccttgaaggacctcaagatcaaatgacccgtgaggcgtctgcgcc 6712455
Query: 1242 ctcatcccagctgctgggggaagagggtcgggaaggctaaggatcgctgtgctgaatgtt 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712454 ctcatcccagctgctgggggaagagggtcgggaaggctaaggatcgctgtgctgaatgtt 6712395
Query: 1302 tctagggtaccagtccgggtccccacagatgctgctccctnnnnnnnnnnnnnnnnagag 1361
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6712394 tctagggtaccagtccgggtccccacagatgctgctccctgggggtggggggtgggagag 6712335
Query: 1362 gcttttcttacctattgaaggaacagttgcctttttcttaaggaaatgctttcatttatt 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712334 gcttttcttacctattgaaggaacagttgcctttttcttaaggaaatgctttcatttatt 6712275
Query: 1422 gt 1423
||
Sbjct: 6712274 gt 6712273
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 495 ggtgggtgtgcaagcacatcaagaagcccattcgctccaccgtcctcagcctggactggc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6526157 ggtgggtgtgcaagcacatcaagaagcccattcgctccaccgtcctcagcctggactggc 6526098
Query: 555 accccaacaacgtgctcctggccgccggctcctgcgacttcaagtgccgg 604
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6526097 accccaacaacgtgctcctggccgccggctcctgcgacttcaagtgccgg 6526048
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 168 agattgccatctgccccaacaaccacgaggtgcacatctacgagaagagtgggaacaagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6527677 agattgccatctgccccaacaaccacgaggtgcacatctacgagaagagtgggaacaagt 6527618
Query: 228 gggtccaggtgcacgagctcaaggagcacaatgggcaggtgacagg 273
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6527617 gggtccaggtgcacgagctcaaggagcacaatgggcaggtgacagg 6527572
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1090 cagccagatctctgtgctcagtggagggaaggccaagtgctcgcagttctgcacgacggg 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712897 cagccagatctctgtgctcagtggagggaaggccaagtgctcgcagttctgcacgacggg 6712838
Query: 1150 catggacggtggcatgagcatctgggacgtgaag 1183
||||||||||||||||||||||||||||||||||
Sbjct: 6712837 catggacggtggcatgagcatctgggacgtgaag 6712804
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 811 cgtggcgactctggcctctgaaacgctaccactgctggctctgaccttcatcacggaaaa 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6524758 cgtggcgactctggcctctgaaacgctaccactgctggctctgaccttcatcacggaaaa 6524699
Query: 871 cagtctggtggcagcg 886
||||||||||||||||
Sbjct: 6524698 cagtctggtggcagcg 6524683
Score = 115 bits (58), Expect = 7e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 34 gcccagagccggttcggcgcgtcgactgcccagagtccgcggccgtggtgccccgagg 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6512734 gcccagagccggttcggcgcgtcgactgcccagagtccgcggccgtggtgccccgagg 6512677
Score = 85.7 bits (43), Expect = 7e-14
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 495 ggtgggtgtgcaagcacatcaagaagcccattcgctccaccgtcctcagcctggactggc 554
|||||||| |||||||||| || ||||| ||||||||||| ||||||||| |||||||||
Sbjct: 6447391 ggtgggtgagcaagcacattaaaaagccgattcgctccacggtcctcagcttggactggc 6447332
Query: 555 accccaacaacgtgctcctggccgccggctcctgcgacttcaa 597
| |||||||| || | ||||| || || ||||| ||||||||
Sbjct: 6447331 atcccaacaatgtcttgctggcggcaggatcctgtgacttcaa 6447289
Score = 79.8 bits (40), Expect = 4e-12
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 1 cccgcccacgaggaagtggccgcgctgcgcggggcccagagccg 44
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6429291 cccgcccacgaggaagtggctgcgctgcgcggggcccagagccg 6429248
Score = 73.8 bits (37), Expect = 3e-10
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 710 ggctgggtgcacggcgtctgcttttcagccagtggtagccgcgtggcctgggtcagtcat 769
|||||||||||||| ||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 6444731 ggctgggtgcacggggtcagcttctctgccagcgggagccgcctggcctgggtcagccac 6444672
Query: 770 gacagcaccgtgt 782
|||||||||||||
Sbjct: 6444671 gacagcaccgtgt 6444659
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,881,644
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 12
Length of query: 1545
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1524
Effective length of database: 2,808,413,156
Effective search space: 4280021649744
Effective search space used: 4280021649744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)