Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776526.1| legumain precursor [Bos taurus]. 756 0.0
Alignment gi|NP_001071348.1| GPI-anchor transamidase precursor [Bos tauru... 106 4e-23
Alignment gi|XP_001251096.1| PREDICTED: GPI-anchor transamidase-like, par... 69 1e-11
>ref|NP_776526.1| legumain precursor [Bos taurus].
Length = 433
Score = 756 bits (1953), Expect = 0.0
Identities = 362/418 (86%), Positives = 382/418 (91%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 298
MIWE LLSLVLG GAVP++DPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEFTVLLSLVLGTGAVPLEDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 299 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 478
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVY+GVLKDYTGEDVTP+NFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPKNFLAVLRGD 120
Query: 479 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 658
AEA PRDHVFVYFTDHGATGILVFPNEDLHVKDLNETI YMY+H+MYQ
Sbjct: 121 AEAVKGVGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIRYMYEHKMYQ 180
Query: 659 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 838
KMVFYIEACESGSMMNHLPP+I+VYATTAANPRESSYACYYDE R+T+LGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPPDINVYATTAANPRESSYACYYDEQRSTFLGDWYSVNWMED 240
Query: 839 SDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 1018
SD EDLT+ETLHKQYQLVKSHTNTSHVMQYGNKSISAMKL+QFQGLKH+ASSPISLP V
Sbjct: 241 SDVEDLTKETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLMQFQGLKHQASSPISLPAVS 300
Query: 1019 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 1198
LDLTPSPEVPL+IMKRKL TNDLQESRRLV +IDRHL+ARN+IEKSVRKIV+L GS
Sbjct: 301 RLDLTPSPEVPLSIMKRKLMSTNDLQESRRLVQKIDRHLEARNIIEKSVRKIVTLVSGSA 360
Query: 1199 AEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPI 1372
AEVDRLLSQR PLT H CYQ AV HFR+HCFNWH+PTYEYALRHLYVL NLCEN YPI
Sbjct: 361 AEVDRLLSQRAPLTEHACYQTAVSHFRSHCFNWHNPTYEYALRHLYVLVNLCENPYPI 418
>ref|NP_001071348.1| GPI-anchor transamidase precursor [Bos taurus].
Length = 395
Score = 106 bits (265), Expect = 4e-23
Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 11/260 (4%)
Frame = +2
Query: 89 DSCSRTPGHRMIWEVAALLSLVLG-IGAVPVDDPEDG------GKHWVVIVAGSNGWYNY 247
D+C + G + +A LL L G + A ++D + +W V+V S W+NY
Sbjct: 3 DTCFLSRG---LTTLAGLLLLPFGSLAASQIEDQAEQFFRSGHTNNWAVLVCTSRFWFNY 59
Query: 248 RHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLK 421
RH A+ Y+ V R GIPD I++M+ DD+A + NP P V + N +VY V
Sbjct: 60 RHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEV 119
Query: 422 DYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNED 598
DY +VT +NFL VL G R ++ +Y T HG G L F +E+
Sbjct: 120 DYRSYEVTVENFLRVLTG--RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEE 177
Query: 599 LHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYAC 775
+ +L + M++ R Y +++F I+ C+ SM PNI A++ E S +
Sbjct: 178 ITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSH 235
Query: 776 YYDEARATYLGDWYSVNWME 835
D A +L D Y+ +E
Sbjct: 236 QPDPAVGVHLMDRYTFYVLE 255
>ref|XP_001251096.1| PREDICTED: GPI-anchor transamidase-like, partial [Bos taurus].
Length = 315
Score = 68.9 bits (167), Expect = 1e-11
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +2
Query: 314 IIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEA 487
I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G +
Sbjct: 2 IVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPS 61
Query: 488 XXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKM 664
R ++ +Y T HG G L F +E++ +L + M++ R Y ++
Sbjct: 62 STPRSKRLLSDD--RSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNEL 119
Query: 665 VFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWME 835
+F I+ C+ SM PNI A++ E S + D A +L D Y+ +E
Sbjct: 120 LFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAVGVHLMDRYTFYVLE 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,564,346
Number of extensions: 1655064
Number of successful extensions: 7009
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6905
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537355.2| PREDICTED: similar to Legumain precursor (Aspar... 729 0.0
Alignment gi|XP_856580.1| PREDICTED: similar to Legumain precursor (Aspar... 211 1e-54
Alignment gi|XP_537109.2| PREDICTED: similar to GPI-anchor transamidase p... 108 2e-23
Alignment gi|XP_867902.1| PREDICTED: similar to GPI-anchor transamidase p... 107 2e-23
Alignment gi|XP_853775.1| PREDICTED: similar to GPI-anchor transamidase p... 107 2e-23
Alignment gi|XP_867896.1| PREDICTED: similar to GPI-anchor transamidase p... 60 6e-09
>ref|XP_537355.2| PREDICTED: similar to Legumain precursor (Asparaginyl endopeptidase)
(Protease, cysteine 1) isoform 1 [Canis familiaris].
Length = 433
Score = 729 bits (1881), Expect = 0.0
Identities = 347/418 (83%), Positives = 374/418 (89%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 298
MIWEVA LLS+VLGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEVAVLLSMVLGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 299 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 478
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVY+GVLKDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPQNFLAVLRGD 120
Query: 479 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 658
EA PRDHVF+YFTDHGATGILVFPN++LHVKDLN+TIHYMYKH+MYQ
Sbjct: 121 EEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDELHVKDLNDTIHYMYKHKMYQ 180
Query: 659 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 838
KMVFYIEACESGSMM HLP NI+VYATTAANP ESSYACYYDE R+T+LGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMRHLPSNINVYATTAANPSESSYACYYDEKRSTFLGDWYSVNWMED 240
Query: 839 SDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 1018
SD EDLT+ETLH+QYQLVKSHTNTSHVMQYGNKSISAMK++QFQG+KHKAS+PISLPPVQ
Sbjct: 241 SDVEDLTKETLHRQYQLVKSHTNTSHVMQYGNKSISAMKVMQFQGMKHKASAPISLPPVQ 300
Query: 1019 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 1198
HLDLTPSPEVPLTIMKRKL TNDLQESR LV +I RHL AR+VI+ +VRK+VSL SD
Sbjct: 301 HLDLTPSPEVPLTIMKRKLMSTNDLQESRTLVEQIHRHLDARHVIDTAVRKMVSLMASSD 360
Query: 1199 AEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPI 1372
AE LLS R L A++C+Q AV HFRTHCFNWHS YEYALR L+VLANLCE +PI
Sbjct: 361 AEAKWLLSDRAELRAYDCFQAAVTHFRTHCFNWHSVMYEYALRQLHVLANLCERPFPI 418
>ref|XP_856580.1| PREDICTED: similar to Legumain precursor (Asparaginyl endopeptidase)
(Protease, cysteine 1) isoform 2 [Canis familiaris].
Length = 156
Score = 211 bits (538), Expect = 1e-54
Identities = 103/141 (73%), Positives = 117/141 (82%)
Frame = +2
Query: 950 MKLVQFQGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDR 1129
MK++QFQG+KHKAS+PISLPPVQHLDLTPSPEVPLTIMKRKL TNDLQESR LV +I R
Sbjct: 1 MKVMQFQGMKHKASAPISLPPVQHLDLTPSPEVPLTIMKRKLMSTNDLQESRTLVEQIHR 60
Query: 1130 HLQARNVIEKSVRKIVSLTVGSDAEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPT 1309
HL AR+VI+ +VRK+VSL SDAE LLS R L A++C+Q AV HFRTHCFNWHS
Sbjct: 61 HLDARHVIDTAVRKMVSLMASSDAEAKWLLSDRAELRAYDCFQAAVTHFRTHCFNWHSVM 120
Query: 1310 YEYALRHLYVLANLCENSYPI 1372
YEYALR L+VLANLCE +PI
Sbjct: 121 YEYALRQLHVLANLCERPFPI 141
>ref|XP_537109.2| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 1 [Canis
familiaris].
Length = 392
Score = 108 bits (269), Expect = 2e-23
Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 20/326 (6%)
Frame = +2
Query: 149 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 301
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 302 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 475
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 476 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 652
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 653 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 829
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 830 MEDSDSEDLTRET-LHKQYQLVKSH---TNTSHVMQYGNKSISAMKLVQFQGLKHK---A 988
+E + + +T ++ +Q+ + H + + + F G K
Sbjct: 255 LEFLEEINPASQTNMNDLFQVCPRSLCVSTPGHRTDLFQRDPKNVLITDFFGSVRKVEIT 314
Query: 989 SSPISLPPVQHLDLTPSPEVPLTIMK 1066
+ ISL P L++T S PL +M+
Sbjct: 315 TDTISLQP--DLEITESRCPPLELME 338
>ref|XP_867902.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 4 [Canis
familiaris].
Length = 393
Score = 107 bits (268), Expect = 2e-23
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Frame = +2
Query: 149 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 301
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 302 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 475
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 476 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 652
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 653 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 829
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 830 ME 835
+E
Sbjct: 255 LE 256
>ref|XP_853775.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 2 [Canis
familiaris].
Length = 396
Score = 107 bits (268), Expect = 2e-23
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Frame = +2
Query: 149 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 301
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 302 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 475
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 476 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 652
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 653 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 829
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 830 ME 835
+E
Sbjct: 255 LE 256
>ref|XP_867896.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 3 [Canis
familiaris].
Length = 306
Score = 59.7 bits (143), Expect = 6e-09
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Frame = +2
Query: 356 NPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXP 529
NP P V + N +VY V DY +VT +NFL VL G +
Sbjct: 7 NPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLLSDD-- 64
Query: 530 RDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMN 706
R ++ +Y T HG G L F +E++ +L + M++ R Y +++F I+ C+ SM
Sbjct: 65 RSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 124
Query: 707 HL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWME 835
PNI A++ E S + D A +L D Y+ +E
Sbjct: 125 RFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYVLE 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,021,281
Number of extensions: 1702607
Number of successful extensions: 7272
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7156
Number of HSP's successfully gapped: 6
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008530.1| legumain preproprotein [Homo sapiens]. 738 0.0
Alignment gi|NP_005597.3| legumain preproprotein [Homo sapiens]. 738 0.0
Alignment gi|NP_005473.1| GPI-anchor transamidase precursor [Homo sapiens]. 108 2e-23
>ref|NP_001008530.1| legumain preproprotein [Homo sapiens].
Length = 433
Score = 738 bits (1905), Expect = 0.0
Identities = 344/418 (82%), Positives = 376/418 (89%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 298
M+W+VA LS+ LGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HRNG
Sbjct: 1 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG 60
Query: 299 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 478
IPDEQI+VMMYDDIA SEDNPTPGIVINRPNG+DVY+GV KDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD 120
Query: 479 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 658
AEA P+DHVF+YFTDHG+TGILVFPNEDLHVKDLNETIHYMYKH+MY+
Sbjct: 121 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR 180
Query: 659 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 838
KMVFYIEACESGSMMNHLP NI+VYATTAANPRESSYACYYDE R+TYLGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED 240
Query: 839 SDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 1018
SD EDLT+ETLHKQY LVKSHTNTSHVMQYGNK+IS MK++QFQG+K KASSP+ LPPV
Sbjct: 241 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT 300
Query: 1019 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 1198
HLDLTPSP+VPLTIMKRKL TNDL+ESR+L EI RHL AR++IEKSVRKIVSL S+
Sbjct: 301 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE 360
Query: 1199 AEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPI 1372
AEV++LLS+R PLT H CY EA+LHFRTHCFNWHSPTYEYALRHLYVL NLCE YP+
Sbjct: 361 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPL 418
>ref|NP_005597.3| legumain preproprotein [Homo sapiens].
Length = 433
Score = 738 bits (1905), Expect = 0.0
Identities = 344/418 (82%), Positives = 376/418 (89%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 298
M+W+VA LS+ LGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HRNG
Sbjct: 1 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG 60
Query: 299 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 478
IPDEQI+VMMYDDIA SEDNPTPGIVINRPNG+DVY+GV KDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD 120
Query: 479 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 658
AEA P+DHVF+YFTDHG+TGILVFPNEDLHVKDLNETIHYMYKH+MY+
Sbjct: 121 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR 180
Query: 659 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 838
KMVFYIEACESGSMMNHLP NI+VYATTAANPRESSYACYYDE R+TYLGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED 240
Query: 839 SDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 1018
SD EDLT+ETLHKQY LVKSHTNTSHVMQYGNK+IS MK++QFQG+K KASSP+ LPPV
Sbjct: 241 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT 300
Query: 1019 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 1198
HLDLTPSP+VPLTIMKRKL TNDL+ESR+L EI RHL AR++IEKSVRKIVSL S+
Sbjct: 301 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE 360
Query: 1199 AEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPI 1372
AEV++LLS+R PLT H CY EA+LHFRTHCFNWHSPTYEYALRHLYVL NLCE YP+
Sbjct: 361 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPL 418
>ref|NP_005473.1| GPI-anchor transamidase precursor [Homo sapiens].
Length = 395
Score = 108 bits (269), Expect = 2e-23
Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 13/242 (5%)
Frame = +2
Query: 149 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 301
L+L G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 18 LLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 77
Query: 302 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 475
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 78 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 137
Query: 476 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 652
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 138 --RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 195
Query: 653 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 829
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 196 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 253
Query: 830 ME 835
+E
Sbjct: 254 LE 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,967,924
Number of extensions: 1678414
Number of successful extensions: 7312
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7187
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035305.1| legumain precursor [Mus musculus]. 716 0.0
Alignment gi|NP_079938.1| GPI-anchor transamidase isoform 1 [Mus musculus]. 106 4e-23
Alignment gi|NP_821135.1| GPI-anchor transamidase isoform 2 [Mus musculus]. 86 9e-17
>ref|NP_035305.1| legumain precursor [Mus musculus].
Length = 435
Score = 716 bits (1847), Expect = 0.0
Identities = 340/420 (80%), Positives = 372/420 (88%), Gaps = 2/420 (0%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPV--DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHR 292
M W VA LLSLVLG GAVPV DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HR
Sbjct: 1 MTWRVAVLLSLVLGAGAVPVGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHR 60
Query: 293 NGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLR 472
NGIPDEQIIVMMYDDIANSE+NPTPG+VINRPNG+DVYKGVLKDYTGEDVTP+NFLAVLR
Sbjct: 61 NGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVTPENFLAVLR 120
Query: 473 GDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRM 652
GDAEA PRDHVF+YFTDHGATGILVFPN+DLHVKDLN+TI YMY+H+M
Sbjct: 121 GDAEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDDLHVKDLNKTIRYMYEHKM 180
Query: 653 YQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWM 832
YQKMVFYIEACESGSMMNHLP +I+VYATTAANP+ESSYACYYDE R TYLGDWYSVNWM
Sbjct: 181 YQKMVFYIEACESGSMMNHLPDDINVYATTAANPKESSYACYYDEERGTYLGDWYSVNWM 240
Query: 833 EDSDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPP 1012
EDSD EDLT+ETLHKQY LVKSHTNTSHVMQYGNKSIS MK++QFQG+KH+ASSPISLPP
Sbjct: 241 EDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKSISTMKVMQFQGMKHRASSPISLPP 300
Query: 1013 VQHLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVG 1192
V HLDLTPSP+VPLTI+KRKL RTND++ES+ L+ +I + L AR+VIEKSV KIVSL G
Sbjct: 301 VTHLDLTPSPDVPLTILKRKLLRTNDVKESQNLIGQIQQFLDARHVIEKSVHKIVSLLAG 360
Query: 1193 SDAEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPI 1372
+R LS+R LTAH+CYQEAV HFRTHCFNWHS TYE+ALR+LYVLANLCE YPI
Sbjct: 361 FGETAERHLSERTMLTAHDCYQEAVTHFRTHCFNWHSVTYEHALRYLYVLANLCEAPYPI 420
>ref|NP_079938.1| GPI-anchor transamidase isoform 1 [Mus musculus].
Length = 395
Score = 106 bits (265), Expect = 4e-23
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Frame = +2
Query: 203 HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVIN 382
+W V+V S W+NYRH A+ Y+ V R GIPD I++M+ DD+A + NP P V +
Sbjct: 45 NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFS 104
Query: 383 RPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFT 556
N +VY V DY +VT +NFL VL G R ++ +Y T
Sbjct: 105 HKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG--RVPPSTPRSKRLLSDDRSNILIYMT 162
Query: 557 DHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDV 730
HG G L F +E++ +L + M++ R Y +++F I+ C+ SM PNI
Sbjct: 163 GHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMA 222
Query: 731 YATTAANPRESSYACYYDEARATYLGDWYSVNWME 835
A++ E S + D A +L D Y+ +E
Sbjct: 223 LASSQVG--EDSLSHQPDPAIGVHLMDRYTFYVLE 255
>ref|NP_821135.1| GPI-anchor transamidase isoform 2 [Mus musculus].
Length = 442
Score = 85.5 bits (210), Expect = 9e-17
Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Frame = +2
Query: 203 HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVIN 382
+W V+V S W+NYRH A+ Y+ V R GIPD I++M+ DD+A + NP P V +
Sbjct: 45 NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFS 104
Query: 383 RPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFT 556
N +VY V DY +VT +NFL VL G R ++ +Y T
Sbjct: 105 HKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG--RVPPSTPRSKRLLSDDRSNILIYMT 162
Query: 557 D-----------------------------------------------HGATGILVF-PN 592
+ HG G L F +
Sbjct: 163 ESAPATPALAFVPLGSSFSAHNRTADLPFSAAHSQILLLKDLLSNSLSHGGNGFLKFQDS 222
Query: 593 EDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSY 769
E++ +L + M++ R Y +++F I+ C+ SM PNI A++ E S
Sbjct: 223 EEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSL 280
Query: 770 ACYYDEARATYLGDWYSVNWME 835
+ D A +L D Y+ +E
Sbjct: 281 SHQPDPAIGVHLMDRYTFYVLE 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,007,272
Number of extensions: 1399162
Number of successful extensions: 5995
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5842
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924321.3| PREDICTED: legumain-like [Sus scrofa]. 795 0.0
Alignment gi|XP_001927117.3| PREDICTED: legumain [Sus scrofa]. 741 0.0
Alignment gi|NP_001027529.1| GPI-anchor transamidase precursor [Sus scrof... 104 1e-22
>ref|XP_001924321.3| PREDICTED: legumain-like [Sus scrofa].
Length = 433
Score = 795 bits (2053), Expect = 0.0
Identities = 389/419 (92%), Positives = 389/419 (92%)
Frame = +2
Query: 119 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 298
MIWEVAALLSLVLGIGAVPVDDPEDGGK AGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEVAALLSLVLGIGAVPVDDPEDGGKXXXXXXAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 299 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 478
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 120
Query: 479 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 658
AEA PRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ
Sbjct: 121 AEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 180
Query: 659 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 838
KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWM
Sbjct: 181 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMXX 240
Query: 839 SDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 1018
EDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ
Sbjct: 241 XXXEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQ 300
Query: 1019 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 1198
HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD
Sbjct: 301 HLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARNVIEKSVRKIVSLTVGSD 360
Query: 1199 AEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPIA 1375
AEVDRLLS AHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPIA
Sbjct: 361 AEVDRLLSXXXXXXAHECYQEAVLHFRTHCFNWHSPTYEYALRHLYVLANLCENSYPIA 419
>ref|XP_001927117.3| PREDICTED: legumain [Sus scrofa].
Length = 396
Score = 741 bits (1912), Expect = 0.0
Identities = 361/376 (96%), Positives = 361/376 (96%)
Frame = +2
Query: 248 RHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY 427
R ADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY
Sbjct: 7 RPHADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY 66
Query: 428 TGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHV 607
TGEDVTPQNFLAVLRGDAEA PRDHVFVYFTDHGATGILVFPNEDLHV
Sbjct: 67 TGEDVTPQNFLAVLRGDAEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHV 126
Query: 608 KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE 787
KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE
Sbjct: 127 KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE 186
Query: 788 ARATYLGDWYSVNWMEDSDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQF 967
ARATYLGDWYSVNWMEDSDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQF
Sbjct: 187 ARATYLGDWYSVNWMEDSDSEDLTRETLHKQYQLVKSHTNTSHVMQYGNKSISAMKLVQF 246
Query: 968 QGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARN 1147
QGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARN
Sbjct: 247 QGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTNDLQESRRLVAEIDRHLQARN 306
Query: 1148 VIEKSVRKIVSLTVGSDAEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALR 1327
VIEKSVRKIVSLTVGSDAEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALR
Sbjct: 307 VIEKSVRKIVSLTVGSDAEVDRLLSQRDPLTAHECYQEAVLHFRTHCFNWHSPTYEYALR 366
Query: 1328 HLYVLANLCENSYPIA 1375
HLYVLANLCENSYPIA
Sbjct: 367 HLYVLANLCENSYPIA 382
>ref|NP_001027529.1| GPI-anchor transamidase precursor [Sus scrofa].
Length = 395
Score = 104 bits (259), Expect = 1e-22
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 13/242 (5%)
Frame = +2
Query: 149 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 301
L+L G++ ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 18 LLLPFGSLAASQIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 77
Query: 302 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 475
PD I++M+ DD+A + NP P V + N +VY V DY VT +NFL VL G
Sbjct: 78 PDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEVDYRSYVVTVENFLRVLTG 137
Query: 476 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 652
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 138 --RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 195
Query: 653 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 829
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 196 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 253
Query: 830 ME 835
+E
Sbjct: 254 LE 255
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,447,018
Number of extensions: 1063459
Number of successful extensions: 4600
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4523
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007133
(1376 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892848.2| Sus scrofa unplaced genomic scaffold ChrUScaf733 404 e-110
Sscrofa_Chr07 404 e-110
>gb|GL892848.2| Sus scrofa unplaced genomic scaffold ChrUScaf733
Length = 211489
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 936 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190239 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 190180
Query: 996 ccatctccctgcccccagtccagcacctcgacctcactccaagccccgaggtgccgctca 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190179 ccatctccctgcccccagtccagcacctcgacctcactccaagccccgaggtgccgctca 190120
Query: 1056 ccatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtcg 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190119 ccatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtcg 190060
Query: 1116 cggagatcgacaggcatctgcagg 1139
||||||||||||||||||||||||
Sbjct: 190059 cggagatcgacaggcatctgcagg 190036
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 88 agactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctcag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204146 agactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctcag 204087
Query: 148 cctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaa 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204086 cctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaa 204032
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 728 gtttatgccacgaccgccgccaacccgagggagtcatcttacgcctgttactatgacgaa 787
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 192181 gtttatgccacgaccgccgccaacccaagggagtcatcttacgcctgttactatgacgaa 192122
Query: 788 gcgagggccacgtacctgggagactggtacagcgtcaactggatg 832
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192121 gcgagggccacgtacctgggagactggtacagcgtcaactggatg 192077
Score = 172 bits (87), Expect = 3e-40
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 847 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccataccaa 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 191932 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccacaccaa 191873
Query: 907 caccagccacgtcatgcagtatggaaacaag 937
|||||||||||||||||||||||||||||||
Sbjct: 191872 caccagccacgtcatgcagtatggaaacaag 191842
Score = 159 bits (80), Expect = 5e-36
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 1136 caggccaggaacgtcatcgagaagtccgtccgcaagatcgtctccttgaccgtggggtcc 1195
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 186980 caggccaggaacgtcatcgagaagtccgtgcgcaaaatcgtctccttgaccgtggggtcc 186921
Query: 1196 gacgctgaggtggacaggctcctgtccc 1223
||||||||||||||||||||||||||||
Sbjct: 186920 gacgctgaggtggacaggctcctgtccc 186893
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 521 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194467 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 194408
Query: 581 gtgtttcctaacgaggat 598
||||||||||||||||||
Sbjct: 194407 gtgtttcctaacgaggat 194390
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1240 ggcgcacgagtgctaccaggaggccgtattgcacttccgcacacactgcttcaactggca 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186792 ggcgcacgagtgctaccaggaggccgtattgcacttccgcacacactgcttcaactggca 186733
Query: 1300 ctcccccacg 1309
||||||||||
Sbjct: 186732 ctcccccacg 186723
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 660 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193080 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 193021
Query: 720 acatcgacg 728
|||||||||
Sbjct: 193020 acatcgacg 193012
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1309 gtatgaatatgctctgagacatttgtacgtgctggccaacctttgtgaaaactcgtatcc 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184925 gtatgaatatgctctgagacatttgtacgtgctggccaacctttgtgaaaactcgtatcc 184866
Query: 1369 gattgcca 1376
||||||||
Sbjct: 184865 gattgcca 184858
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 599 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193904 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 193845
Query: 659 aag 661
|||
Sbjct: 193844 aag 193842
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 221 gcgggttcgaatggctggtataactataggcaccagg 257
|||||||||||||||||||||||||||||||||||||
Sbjct: 203931 gcgggttcgaatggctggtataactataggcaccagg 203895
>Sscrofa_Chr07
|| Length = 134764511
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 936 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120787271 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 120787212
Query: 996 ccatctccctgcccccagtccagcacctcgacctcactccaagccccgaggtgccgctca 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120787211 ccatctccctgcccccagtccagcacctcgacctcactccaagccccgaggtgccgctca 120787152
Query: 1056 ccatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtcg 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120787151 ccatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtcg 120787092
Query: 1116 cggagatcgacaggcatctgcagg 1139
||||||||||||||||||||||||
Sbjct: 120787091 cggagatcgacaggcatctgcagg 120787068
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 88 agactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctcag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804326 agactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctcag 120804267
Query: 148 cctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaacactg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804266 cctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaacactg 120804207
Query: 208 ggtggtgattgtcgcgggttcgaatggctggtataactataggcaccagg 257
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804206 ggtggtgattgtcgcgggttcgaatggctggtataactataggcaccagg 120804157
Score = 329 bits (166), Expect = 2e-87
Identities = 172/174 (98%)
Strand = Plus / Minus
Query: 1136 caggccaggaacgtcatcgagaagtccgtccgcaagatcgtctccttgaccgtggggtcc 1195
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 120783767 caggccaggaacgtcatcgagaagtccgtgcgcaaaatcgtctccttgaccgtggggtcc 120783708
Query: 1196 gacgctgaggtggacaggctcctgtcccagagagacccgctcacggcgcacgagtgctac 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120783707 gacgctgaggtggacaggctcctgtcccagagagacccgctcacggcgcacgagtgctac 120783648
Query: 1256 caggaggccgtattgcacttccgcacacactgcttcaactggcactcccccacg 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120783647 caggaggccgtattgcacttccgcacacactgcttcaactggcactcccccacg 120783594
Score = 232 bits (117), Expect = 4e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 728 gtttatgccacgaccgccgccaacccgagggagtcatcttacgcctgttactatgacgaa 787
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120789518 gtttatgccacgaccgccgccaacccaagggagtcatcttacgcctgttactatgacgaa 120789459
Query: 788 gcgagggccacgtacctgggagactggtacagcgtcaactggatggaagactcagactcg 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120789458 gcgagggccacgtacctgggagactggtacagcgtcaactggatggaagactcagactcg 120789399
Query: 848 g 848
|
Sbjct: 120789398 g 120789398
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 254 caggcagatgcgtgccatgcctaccagatcgttcaccgcaatgggattcccgacgagcag 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120795469 caggcagatgcgtgccatgcctaccagatcgttcaccgcaatgggattcccgacgagcag 120795410
Query: 314 atcattgtgatgatgtacgatgacatcgccaactctgaaga 354
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 120795409 atcattgtgatgatgtacgatgacatcgccaactctgaaga 120795369
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 gcaatcactgcagggcgggcgtcgcgaggtggcctgtctgaggctgcgcgccgtgaggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120811634 gcaatcactgcagggcgggcgtcgcgaggtggcctgtctgaggctgcgcgccgtgaggcg 120811575
Query: 61 ttcccacggtcctgcggcaggtaaccaag 89
|||||||||||||||||||||||||||||
Sbjct: 120811574 ttcccacggtcctgcggcaggtaaccaag 120811546
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 435 aggatgtcaccccacagaatttcctggcggtgttgagaggcgatgcggaagcagtgaagg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120793239 aggatgtcaccccacagaatttcctggcggtgttgagaggcgatgcggaagcagtgaagg 120793180
Query: 495 gcaaagggtctggaaaggtcttgaagag 522
||||||||||||||||||||||||||||
Sbjct: 120793179 gcaaagggtctggaaaggtcttgaagag 120793152
Score = 172 bits (87), Expect = 3e-40
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 847 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccataccaa 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120789058 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccacaccaa 120788999
Query: 907 caccagccacgtcatgcagtatggaaacaag 937
|||||||||||||||||||||||||||||||
Sbjct: 120788998 caccagccacgtcatgcagtatggaaacaag 120788968
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 521 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120791804 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 120791745
Query: 581 gtgtttcctaacgaggat 598
||||||||||||||||||
Sbjct: 120791744 gtgtttcctaacgaggat 120791727
Score = 149 bits (75), Expect = 5e-33
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 355 caatcccacgccaggaatcgtgatcaacaggcccaacggctcggacgtgtacaagggggt 414
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120794205 caatcctaccccaggaatcgtgatcaacaggcccaacggctcggacgtgtacaagggggt 120794146
Query: 415 tctgaaggactacaccggcgagg 437
|||||||||||||||||||||||
Sbjct: 120794145 tctgaaggactacaccggcgagg 120794123
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 660 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120790417 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 120790358
Query: 720 acatcgacg 728
|||||||||
Sbjct: 120790357 acatcgacg 120790349
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1309 gtatgaatatgctctgagacatttgtacgtgctggccaacctttgtgaaaactcgtatcc 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120781821 gtatgaatatgctctgagacatttgtacgtgctggccaacctttgtgaaaactcgtatcc 120781762
Query: 1369 gattgcca 1376
||||||||
Sbjct: 120781761 gattgcca 120781754
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 599 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120791241 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 120791182
Query: 659 aag 661
|||
Sbjct: 120791181 aag 120791179
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,296,414
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 24
Length of query: 1376
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1355
Effective length of database: 2,808,413,156
Effective search space: 3805399826380
Effective search space used: 3805399826380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)