Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776526.1| legumain precursor [Bos taurus]. 472 e-160
Alignment gi|NP_001071348.1| GPI-anchor transamidase precursor [Bos tauru... 106 3e-23
Alignment gi|XP_001251096.1| PREDICTED: GPI-anchor transamidase-like, par... 69 7e-12
>ref|NP_776526.1| legumain precursor [Bos taurus].
Length = 433
Score = 472 bits (1214), Expect(3) = e-160
Identities = 221/252 (87%), Positives = 232/252 (92%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 288
MIWE LLSLVLG GAVP++DPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEFTVLLSLVLGTGAVPLEDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 289 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 468
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVY+GVLKDYTGEDVTP+NFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPKNFLAVLRGD 120
Query: 469 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 648
AEA PRDHVFVYFTDHGATGILVFPNEDLHVKDLNETI YMY+H+MYQ
Sbjct: 121 AEAVKGVGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIRYMYEHKMYQ 180
Query: 649 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 828
KMVFYIEACESGSMMNHLPP+I+VYATTAANPRESSYACYYDE R+T+LGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPPDINVYATTAANPRESSYACYYDEQRSTFLGDWYSVNWMED 240
Query: 829 SDSEDLTRETLH 864
SD EDLT+ETLH
Sbjct: 241 SDVEDLTKETLH 252
Score = 106 bits (265), Expect(3) = e-160
Identities = 54/72 (75%), Positives = 60/72 (83%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNKSISA++L+QFQGLKH+ASSPISLP LDLTPSPEVPL+IMKRKL T D
Sbjct: 265 SHVMQYGNKSISAMKLMQFQGLKHQASSPISLPAVSRLDLTPSPEVPLSIMKRKLMSTND 324
Query: 1079 LHESXRPFPEID 1114
L ES R +ID
Sbjct: 325 LQESRRLVQKID 336
Score = 27.7 bits (60), Expect(3) = e-160
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QYQLVKSHTNT+
Sbjct: 253 KQYQLVKSHTNTS 265
>ref|NP_001071348.1| GPI-anchor transamidase precursor [Bos taurus].
Length = 395
Score = 106 bits (265), Expect = 3e-23
Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 11/260 (4%)
Frame = +1
Query: 79 DSCSRTPGHRMIWEVAALLSLVLG-IGAVPVDDPEDG------GKHWVVIVAGSNGWYNY 237
D+C + G + +A LL L G + A ++D + +W V+V S W+NY
Sbjct: 3 DTCFLSRG---LTTLAGLLLLPFGSLAASQIEDQAEQFFRSGHTNNWAVLVCTSRFWFNY 59
Query: 238 RHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLK 411
RH A+ Y+ V R GIPD I++M+ DD+A + NP P V + N +VY V
Sbjct: 60 RHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEV 119
Query: 412 DYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNED 588
DY +VT +NFL VL G R ++ +Y T HG G L F +E+
Sbjct: 120 DYRSYEVTVENFLRVLTG--RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEE 177
Query: 589 LHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYAC 765
+ +L + M++ R Y +++F I+ C+ SM PNI A++ E S +
Sbjct: 178 ITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSH 235
Query: 766 YYDEARATYLGDWYSVNWME 825
D A +L D Y+ +E
Sbjct: 236 QPDPAVGVHLMDRYTFYVLE 255
>ref|XP_001251096.1| PREDICTED: GPI-anchor transamidase-like, partial [Bos taurus].
Length = 315
Score = 68.9 bits (167), Expect = 7e-12
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +1
Query: 304 IIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEA 477
I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G +
Sbjct: 2 IVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPS 61
Query: 478 XXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKM 654
R ++ +Y T HG G L F +E++ +L + M++ R Y ++
Sbjct: 62 STPRSKRLLSDD--RSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNEL 119
Query: 655 VFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWME 825
+F I+ C+ SM PNI A++ E S + D A +L D Y+ +E
Sbjct: 120 LFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAVGVHLMDRYTFYVLE 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,469,378
Number of extensions: 1371254
Number of successful extensions: 5039
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5011
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537355.2| PREDICTED: similar to Legumain precursor (Aspar... 473 e-161
Alignment gi|XP_537109.2| PREDICTED: similar to GPI-anchor transamidase p... 107 2e-23
Alignment gi|XP_867902.1| PREDICTED: similar to GPI-anchor transamidase p... 107 2e-23
Alignment gi|XP_853775.1| PREDICTED: similar to GPI-anchor transamidase p... 107 2e-23
Alignment gi|XP_856580.1| PREDICTED: similar to Legumain precursor (Aspar... 86 8e-17
Alignment gi|XP_867896.1| PREDICTED: similar to GPI-anchor transamidase p... 60 5e-09
>ref|XP_537355.2| PREDICTED: similar to Legumain precursor (Asparaginyl
endopeptidase) (Protease, cysteine 1) isoform 1 [Canis
familiaris].
Length = 433
Score = 473 bits (1217), Expect(3) = e-161
Identities = 220/252 (87%), Positives = 232/252 (92%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 288
MIWEVA LLS+VLGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEVAVLLSMVLGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 289 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 468
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVY+GVLKDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPQNFLAVLRGD 120
Query: 469 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 648
EA PRDHVF+YFTDHGATGILVFPN++LHVKDLN+TIHYMYKH+MYQ
Sbjct: 121 EEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDELHVKDLNDTIHYMYKHKMYQ 180
Query: 649 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 828
KMVFYIEACESGSMM HLP NI+VYATTAANP ESSYACYYDE R+T+LGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMRHLPSNINVYATTAANPSESSYACYYDEKRSTFLGDWYSVNWMED 240
Query: 829 SDSEDLTRETLH 864
SD EDLT+ETLH
Sbjct: 241 SDVEDLTKETLH 252
Score = 110 bits (276), Expect(3) = e-161
Identities = 53/64 (82%), Positives = 59/64 (92%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNKSISA++++QFQG+KHKAS+PISLPP QHLDLTPSPEVPLTIMKRKL T D
Sbjct: 265 SHVMQYGNKSISAMKVMQFQGMKHKASAPISLPPVQHLDLTPSPEVPLTIMKRKLMSTND 324
Query: 1079 LHES 1090
L ES
Sbjct: 325 LQES 328
Score = 27.7 bits (60), Expect(3) = e-161
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QYQLVKSHTNT+
Sbjct: 253 RQYQLVKSHTNTS 265
>ref|XP_537109.2| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 1 [Canis
familiaris].
Length = 392
Score = 107 bits (268), Expect = 2e-23
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Frame = +1
Query: 139 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 291
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 292 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 465
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 466 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 642
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 643 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 819
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 820 ME 825
+E
Sbjct: 255 LE 256
>ref|XP_867902.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 4 [Canis
familiaris].
Length = 393
Score = 107 bits (268), Expect = 2e-23
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Frame = +1
Query: 139 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 291
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 292 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 465
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 466 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 642
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 643 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 819
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 820 ME 825
+E
Sbjct: 255 LE 256
>ref|XP_853775.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 2 [Canis
familiaris].
Length = 396
Score = 107 bits (268), Expect = 2e-23
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Frame = +1
Query: 139 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 291
L+L +G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 19 LLLSVGSVAAGRIEDQTEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 78
Query: 292 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 465
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 79 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 138
Query: 466 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 642
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 139 --RIPSSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 196
Query: 643 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 819
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 197 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 254
Query: 820 ME 825
+E
Sbjct: 255 LE 256
>ref|XP_856580.1| PREDICTED: similar to Legumain precursor (Asparaginyl endopeptidase)
(Protease, cysteine 1) isoform 2 [Canis familiaris].
Length = 156
Score = 85.5 bits (210), Expect = 8e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +2
Query: 938 IELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXDLHES 1090
++++QFQG+KHKAS+PISLPP QHLDLTPSPEVPLTIMKRKL T DL ES
Sbjct: 1 MKVMQFQGMKHKASAPISLPPVQHLDLTPSPEVPLTIMKRKLMSTNDLQES 51
>ref|XP_867896.1| PREDICTED: similar to GPI-anchor transamidase precursor (GPI
transamidase) (Phosphatidylinositol-glycan biosynthesis,
class K protein) (PIG-K) (hGPI8) isoform 3 [Canis
familiaris].
Length = 306
Score = 59.7 bits (143), Expect = 5e-09
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Frame = +1
Query: 346 NPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXP 519
NP P V + N +VY V DY +VT +NFL VL G +
Sbjct: 7 NPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLLSDD-- 64
Query: 520 RDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMN 696
R ++ +Y T HG G L F +E++ +L + M++ R Y +++F I+ C+ SM
Sbjct: 65 RSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 124
Query: 697 HL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWME 825
PNI A++ E S + D A +L D Y+ +E
Sbjct: 125 RFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYVLE 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,532,199
Number of extensions: 1415872
Number of successful extensions: 5129
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5105
Number of HSP's successfully gapped: 8
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008530.1| legumain preproprotein [Homo sapiens]. 468 e-157
Alignment gi|NP_005597.3| legumain preproprotein [Homo sapiens]. 468 e-157
Alignment gi|NP_005473.1| GPI-anchor transamidase precursor [Homo sapiens]. 108 1e-23
>ref|NP_001008530.1| legumain preproprotein [Homo sapiens].
Length = 433
Score = 468 bits (1203), Expect(3) = e-157
Identities = 215/252 (85%), Positives = 231/252 (91%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 288
M+W+VA LS+ LGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HRNG
Sbjct: 1 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG 60
Query: 289 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 468
IPDEQI+VMMYDDIA SEDNPTPGIVINRPNG+DVY+GV KDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD 120
Query: 469 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 648
AEA P+DHVF+YFTDHG+TGILVFPNEDLHVKDLNETIHYMYKH+MY+
Sbjct: 121 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR 180
Query: 649 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 828
KMVFYIEACESGSMMNHLP NI+VYATTAANPRESSYACYYDE R+TYLGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED 240
Query: 829 SDSEDLTRETLH 864
SD EDLT+ETLH
Sbjct: 241 SDVEDLTKETLH 252
Score = 102 bits (253), Expect(3) = e-157
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNK+IS ++++QFQG+K KASSP+ LPP HLDLTPSP+VPLTIMKRKL T D
Sbjct: 265 SHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVTHLDLTPSPDVPLTIMKRKLMNTND 324
Query: 1079 LHESXRPFPEI 1111
L ES + EI
Sbjct: 325 LEESRQLTEEI 335
Score = 25.8 bits (55), Expect(3) = e-157
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QY LVKSHTNT+
Sbjct: 253 KQYHLVKSHTNTS 265
>ref|NP_005597.3| legumain preproprotein [Homo sapiens].
Length = 433
Score = 468 bits (1203), Expect(3) = e-157
Identities = 215/252 (85%), Positives = 231/252 (91%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 288
M+W+VA LS+ LGIGAVP+DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HRNG
Sbjct: 1 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG 60
Query: 289 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 468
IPDEQI+VMMYDDIA SEDNPTPGIVINRPNG+DVY+GV KDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD 120
Query: 469 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 648
AEA P+DHVF+YFTDHG+TGILVFPNEDLHVKDLNETIHYMYKH+MY+
Sbjct: 121 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR 180
Query: 649 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 828
KMVFYIEACESGSMMNHLP NI+VYATTAANPRESSYACYYDE R+TYLGDWYSVNWMED
Sbjct: 181 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED 240
Query: 829 SDSEDLTRETLH 864
SD EDLT+ETLH
Sbjct: 241 SDVEDLTKETLH 252
Score = 102 bits (253), Expect(3) = e-157
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNK+IS ++++QFQG+K KASSP+ LPP HLDLTPSP+VPLTIMKRKL T D
Sbjct: 265 SHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVTHLDLTPSPDVPLTIMKRKLMNTND 324
Query: 1079 LHESXRPFPEI 1111
L ES + EI
Sbjct: 325 LEESRQLTEEI 335
Score = 25.8 bits (55), Expect(3) = e-157
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QY LVKSHTNT+
Sbjct: 253 KQYHLVKSHTNTS 265
>ref|NP_005473.1| GPI-anchor transamidase precursor [Homo sapiens].
Length = 395
Score = 108 bits (269), Expect = 1e-23
Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 13/242 (5%)
Frame = +1
Query: 139 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 291
L+L G+V ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 18 LLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 77
Query: 292 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 465
PD I++M+ DD+A + NP P V + N +VY V DY +VT +NFL VL G
Sbjct: 78 PDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG 137
Query: 466 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 642
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 138 --RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 195
Query: 643 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 819
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 196 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 253
Query: 820 ME 825
+E
Sbjct: 254 LE 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,613,711
Number of extensions: 1393103
Number of successful extensions: 5185
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5160
Number of HSP's successfully gapped: 7
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035305.1| legumain precursor [Mus musculus]. 461 e-156
Alignment gi|NP_079938.1| GPI-anchor transamidase isoform 1 [Mus musculus]. 106 3e-23
Alignment gi|NP_821135.1| GPI-anchor transamidase isoform 2 [Mus musculus]. 86 7e-17
>ref|NP_035305.1| legumain precursor [Mus musculus].
Length = 435
Score = 461 bits (1187), Expect(3) = e-156
Identities = 216/254 (85%), Positives = 230/254 (90%), Gaps = 2/254 (0%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPV--DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHR 282
M W VA LLSLVLG GAVPV DDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQI+HR
Sbjct: 1 MTWRVAVLLSLVLGAGAVPVGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHR 60
Query: 283 NGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLR 462
NGIPDEQIIVMMYDDIANSE+NPTPG+VINRPNG+DVYKGVLKDYTGEDVTP+NFLAVLR
Sbjct: 61 NGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVTPENFLAVLR 120
Query: 463 GDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRM 642
GDAEA PRDHVF+YFTDHGATGILVFPN+DLHVKDLN+TI YMY+H+M
Sbjct: 121 GDAEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDDLHVKDLNKTIRYMYEHKM 180
Query: 643 YQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWM 822
YQKMVFYIEACESGSMMNHLP +I+VYATTAANP+ESSYACYYDE R TYLGDWYSVNWM
Sbjct: 181 YQKMVFYIEACESGSMMNHLPDDINVYATTAANPKESSYACYYDEERGTYLGDWYSVNWM 240
Query: 823 EDSDSEDLTRETLH 864
EDSD EDLT+ETLH
Sbjct: 241 EDSDVEDLTKETLH 254
Score = 105 bits (262), Expect(3) = e-156
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNKSIS ++++QFQG+KH+ASSPISLPP HLDLTPSP+VPLTI+KRKL RT D
Sbjct: 267 SHVMQYGNKSISTMKVMQFQGMKHRASSPISLPPVTHLDLTPSPDVPLTILKRKLLRTND 326
Query: 1079 LHES 1090
+ ES
Sbjct: 327 VKES 330
Score = 25.8 bits (55), Expect(3) = e-156
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QY LVKSHTNT+
Sbjct: 255 KQYHLVKSHTNTS 267
>ref|NP_079938.1| GPI-anchor transamidase isoform 1 [Mus musculus].
Length = 395
Score = 106 bits (265), Expect = 3e-23
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Frame = +1
Query: 193 HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVIN 372
+W V+V S W+NYRH A+ Y+ V R GIPD I++M+ DD+A + NP P V +
Sbjct: 45 NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFS 104
Query: 373 RPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFT 546
N +VY V DY +VT +NFL VL G R ++ +Y T
Sbjct: 105 HKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG--RVPPSTPRSKRLLSDDRSNILIYMT 162
Query: 547 DHGATGILVF-PNEDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDV 720
HG G L F +E++ +L + M++ R Y +++F I+ C+ SM PNI
Sbjct: 163 GHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMA 222
Query: 721 YATTAANPRESSYACYYDEARATYLGDWYSVNWME 825
A++ E S + D A +L D Y+ +E
Sbjct: 223 LASSQVG--EDSLSHQPDPAIGVHLMDRYTFYVLE 255
>ref|NP_821135.1| GPI-anchor transamidase isoform 2 [Mus musculus].
Length = 442
Score = 85.5 bits (210), Expect = 7e-17
Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Frame = +1
Query: 193 HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVIN 372
+W V+V S W+NYRH A+ Y+ V R GIPD I++M+ DD+A + NP P V +
Sbjct: 45 NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFS 104
Query: 373 RPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFT 546
N +VY V DY +VT +NFL VL G R ++ +Y T
Sbjct: 105 HKNMELNVYGDDVEVDYRSYEVTVENFLRVLTG--RVPPSTPRSKRLLSDDRSNILIYMT 162
Query: 547 D-----------------------------------------------HGATGILVF-PN 582
+ HG G L F +
Sbjct: 163 ESAPATPALAFVPLGSSFSAHNRTADLPFSAAHSQILLLKDLLSNSLSHGGNGFLKFQDS 222
Query: 583 EDLHVKDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSY 759
E++ +L + M++ R Y +++F I+ C+ SM PNI A++ E S
Sbjct: 223 EEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSL 280
Query: 760 ACYYDEARATYLGDWYSVNWME 825
+ D A +L D Y+ +E
Sbjct: 281 SHQPDPAIGVHLMDRYTFYVLE 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,236,413
Number of extensions: 1160336
Number of successful extensions: 4337
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4317
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924321.3| PREDICTED: legumain-like [Sus scrofa]. 475 e-166
Alignment gi|XP_001927117.3| PREDICTED: legumain [Sus scrofa]. 406 e-146
Alignment gi|NP_001027529.1| GPI-anchor transamidase precursor [Sus scrof... 104 1e-22
>ref|XP_001924321.3| PREDICTED: legumain-like [Sus scrofa].
Length = 433
Score = 475 bits (1222), Expect(3) = e-166
Identities = 228/252 (90%), Positives = 228/252 (90%)
Frame = +1
Query: 109 MIWEVAALLSLVLGIGAVPVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNG 288
MIWEVAALLSLVLGIGAVPVDDPEDGGK AGSNGWYNYRHQADACHAYQIVHRNG
Sbjct: 1 MIWEVAALLSLVLGIGAVPVDDPEDGGKXXXXXXAGSNGWYNYRHQADACHAYQIVHRNG 60
Query: 289 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 468
IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD
Sbjct: 61 IPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDYTGEDVTPQNFLAVLRGD 120
Query: 469 AEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 648
AEA PRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ
Sbjct: 121 AEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHVKDLNETIHYMYKHRMYQ 180
Query: 649 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMED 828
KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWM
Sbjct: 181 KMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNWMXX 240
Query: 829 SDSEDLTRETLH 864
EDLTRETLH
Sbjct: 241 XXXEDLTRETLH 252
Score = 125 bits (313), Expect(3) = e-166
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNKSISA++LVQFQGLKHKASSPISLPP QHLDLTPSPEVPLTIMKRKLTRT D
Sbjct: 265 SHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTND 324
Query: 1079 LHESXRPFPEID 1114
L ES R EID
Sbjct: 325 LQESRRLVAEID 336
Score = 27.7 bits (60), Expect(3) = e-166
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QYQLVKSHTNT+
Sbjct: 253 KQYQLVKSHTNTS 265
>ref|XP_001927117.3| PREDICTED: legumain [Sus scrofa].
Length = 396
Score = 406 bits (1043), Expect(3) = e-146
Identities = 194/209 (92%), Positives = 194/209 (92%)
Frame = +1
Query: 238 RHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY 417
R ADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY
Sbjct: 7 RPHADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYKGVLKDY 66
Query: 418 TGEDVTPQNFLAVLRGDAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVFPNEDLHV 597
TGEDVTPQNFLAVLRGDAEA PRDHVFVYFTDHGATGILVFPNEDLHV
Sbjct: 67 TGEDVTPQNFLAVLRGDAEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFPNEDLHV 126
Query: 598 KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE 777
KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE
Sbjct: 127 KDLNETIHYMYKHRMYQKMVFYIEACESGSMMNHLPPNIDVYATTAANPRESSYACYYDE 186
Query: 778 ARATYLGDWYSVNWMEDSDSEDLTRETLH 864
ARATYLGDWYSVNWMEDSDSEDLTRETLH
Sbjct: 187 ARATYLGDWYSVNWMEDSDSEDLTRETLH 215
Score = 125 bits (313), Expect(3) = e-146
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = +2
Query: 899 SHVMQYGNKSISAIELVQFQGLKHKASSPISLPPSQHLDLTPSPEVPLTIMKRKLTRTXD 1078
SHVMQYGNKSISA++LVQFQGLKHKASSPISLPP QHLDLTPSPEVPLTIMKRKLTRT D
Sbjct: 228 SHVMQYGNKSISAMKLVQFQGLKHKASSPISLPPVQHLDLTPSPEVPLTIMKRKLTRTND 287
Query: 1079 LHESXRPFPEID 1114
L ES R EID
Sbjct: 288 LQESRRLVAEID 299
Score = 27.7 bits (60), Expect(3) = e-146
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 864 QQYQLVKSHTNTA 902
+QYQLVKSHTNT+
Sbjct: 216 KQYQLVKSHTNTS 228
>ref|NP_001027529.1| GPI-anchor transamidase precursor [Sus scrofa].
Length = 395
Score = 104 bits (259), Expect = 1e-22
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 13/242 (5%)
Frame = +1
Query: 139 LVLGIGAVPVDDPEDGGK---------HWVVIVAGSNGWYNYRHQADACHAYQIVHRNGI 291
L+L G++ ED + +W V+V S W+NYRH A+ Y+ V R GI
Sbjct: 18 LLLPFGSLAASQIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGI 77
Query: 292 PDEQIIVMMYDDIANSEDNPTPGIVINRPNGS-DVY-KGVLKDYTGEDVTPQNFLAVLRG 465
PD I++M+ DD+A + NP P V + N +VY V DY VT +NFL VL G
Sbjct: 78 PDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDDVEVDYRSYVVTVENFLRVLTG 137
Query: 466 DAEAXXXXXXXXXXXXXPRDHVFVYFTDHGATGILVF-PNEDLHVKDLNETIHYMYKHRM 642
R ++ +Y T HG G L F +E++ +L + M++ R
Sbjct: 138 --RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRR 195
Query: 643 YQKMVFYIEACESGSMMNHL-PPNIDVYATTAANPRESSYACYYDEARATYLGDWYSVNW 819
Y +++F I+ C+ SM PNI A++ E S + D A +L D Y+
Sbjct: 196 YNELLFIIDTCQGASMYERFYSPNIMALASSQVG--EDSLSHQPDPAIGVHLMDRYTFYV 253
Query: 820 ME 825
+E
Sbjct: 254 LE 255
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,953,265
Number of extensions: 882686
Number of successful extensions: 3336
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3328
Number of HSP's successfully gapped: 7
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007135
(1114 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 339 2e-90
gb|GL892848.2| Sus scrofa unplaced genomic scaffold ChrUScaf733 289 2e-75
>Sscrofa_Chr07
|| Length = 134764511
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 77 cagactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804327 cagactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctca 120804268
Query: 137 gcctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaacact 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804267 gcctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaacact 120804208
Query: 197 gggtggtgattgtcgcgggttcgaatggctggtataactataggcaccagg 247
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120804207 gggtggtgattgtcgcgggttcgaatggctggtataactataggcaccagg 120804157
Score = 289 bits (146), Expect = 2e-75
Identities = 182/192 (94%), Gaps = 2/192 (1%)
Strand = Plus / Minus
Query: 924 agtccatctctgccattgagttggtgcagtttcagggtctgaaacacaaagccagctctc 983
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120787271 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 120787212
Query: 984 ccatctccctgccccccagtc-agcacctcgacctcactccaagccccgaggtgccgctc 1042
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120787211 ccatctccctgccccc-agtccagcacctcgacctcactccaagccccgaggtgccgctc 120787153
Query: 1043 accatcatgaaaaggaaactgacgcgcaccancgatctgcacgagtccagncgtcctttc 1102
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| | ||
Sbjct: 120787152 accatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtc 120787093
Query: 1103 ccggagatcgac 1114
|||||||||||
Sbjct: 120787092 gcggagatcgac 120787081
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 718 gtttatgccacgaccgccgccaacccgagggagtcatcttacgcctgttactatgacgaa 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120789518 gtttatgccacgaccgccgccaacccaagggagtcatcttacgcctgttactatgacgaa 120789459
Query: 778 gcgagggccacgtacctgggagactggtacagcgtcaactggatggaagactcagactcg 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120789458 gcgagggccacgtacctgggagactggtacagcgtcaactggatggaagactcagactcg 120789399
Query: 838 g 838
|
Sbjct: 120789398 g 120789398
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 244 caggcagatgcgtgccatgcctaccagatcgttcaccgcaatgggattcccgacgagcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120795469 caggcagatgcgtgccatgcctaccagatcgttcaccgcaatgggattcccgacgagcag 120795410
Query: 304 atcattgtgatgatgtacgatgacatcgccaactctgaaga 344
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 120795409 atcattgtgatgatgtacgatgacatcgccaactctgaaga 120795369
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 425 aggatgtcaccccacagaatttcctggcggtgttgagaggcgatgcggaagcagtgaagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120793239 aggatgtcaccccacagaatttcctggcggtgttgagaggcgatgcggaagcagtgaagg 120793180
Query: 485 gcaaagggtctggaaaggtcttgaagag 512
||||||||||||||||||||||||||||
Sbjct: 120793179 gcaaagggtctggaaaggtcttgaagag 120793152
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 511 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120791804 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 120791745
Query: 571 gtgtttcctaacgaggat 588
||||||||||||||||||
Sbjct: 120791744 gtgtttcctaacgaggat 120791727
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 2 aatcactgcagggcgggcgtcgcgaggtggcctgtctgaggctgcgcgccgtgaggcgtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120811632 aatcactgcagggcgggcgtcgcgaggtggcctgtctgaggctgcgcgccgtgaggcgtt 120811573
Query: 62 cccacggtcctgcggcag 79
||||||||||||||||||
Sbjct: 120811572 cccacggtcctgcggcag 120811555
Score = 149 bits (75), Expect = 4e-33
Identities = 89/91 (97%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 837 ggaggatctgaccagagagacgctccacaa-cagtaccagctggtgaaatcccacaccaa 895
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 120789058 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccacaccaa 120788999
Query: 896 ca-cagccacgtcatgcagtatggaaacaag 925
|| ||||||||||||||||||||||||||||
Sbjct: 120788998 caccagccacgtcatgcagtatggaaacaag 120788968
Score = 149 bits (75), Expect = 4e-33
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 345 caatcccacgccaggaatcgtgatcaacaggcccaacggctcggacgtgtacaagggggt 404
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120794205 caatcctaccccaggaatcgtgatcaacaggcccaacggctcggacgtgtacaagggggt 120794146
Query: 405 tctgaaggactacaccggcgagg 427
|||||||||||||||||||||||
Sbjct: 120794145 tctgaaggactacaccggcgagg 120794123
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 650 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120790417 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 120790358
Query: 710 acatcgacg 718
|||||||||
Sbjct: 120790357 acatcgacg 120790349
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 589 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120791241 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 120791182
Query: 649 aag 651
|||
Sbjct: 120791181 aag 120791179
>gb|GL892848.2| Sus scrofa unplaced genomic scaffold ChrUScaf733
Length = 211489
Score = 289 bits (146), Expect = 2e-75
Identities = 182/192 (94%), Gaps = 2/192 (1%)
Strand = Plus / Minus
Query: 924 agtccatctctgccattgagttggtgcagtttcagggtctgaaacacaaagccagctctc 983
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190239 agtccatctctgccatgaagttggtgcagtttcagggtctgaaacacaaagccagctctc 190180
Query: 984 ccatctccctgccccccagtc-agcacctcgacctcactccaagccccgaggtgccgctc 1042
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 190179 ccatctccctgccccc-agtccagcacctcgacctcactccaagccccgaggtgccgctc 190121
Query: 1043 accatcatgaaaaggaaactgacgcgcaccancgatctgcacgagtccagncgtcctttc 1102
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| | ||
Sbjct: 190120 accatcatgaaaaggaaactgacgcgcaccaacgatctgcaggagtccaggcgtcttgtc 190061
Query: 1103 ccggagatcgac 1114
|||||||||||
Sbjct: 190060 gcggagatcgac 190049
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 77 cagactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204147 cagactcctgcagtcgaacgccggggcacaggatgatttgggaagtagccgcgctgctca 204088
Query: 137 gcctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204087 gcctggtcctgggaattggtgctgttcccgtggatgatcctgaggatggaggcaaa 204032
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 718 gtttatgccacgaccgccgccaacccgagggagtcatcttacgcctgttactatgacgaa 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 192181 gtttatgccacgaccgccgccaacccaagggagtcatcttacgcctgttactatgacgaa 192122
Query: 778 gcgagggccacgtacctgggagactggtacagcgtcaactggatg 822
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192121 gcgagggccacgtacctgggagactggtacagcgtcaactggatg 192077
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 511 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194467 agcggcccccgggaccacgtgttcgtttacttcactgatcacggagccactgggatactg 194408
Query: 571 gtgtttcctaacgaggat 588
||||||||||||||||||
Sbjct: 194407 gtgtttcctaacgaggat 194390
Score = 149 bits (75), Expect = 4e-33
Identities = 89/91 (97%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 837 ggaggatctgaccagagagacgctccacaa-cagtaccagctggtgaaatcccacaccaa 895
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 191932 ggaggatctgaccagagagacgctccacaaacagtaccagctggtgaaatcccacaccaa 191873
Query: 896 ca-cagccacgtcatgcagtatggaaacaag 925
|| ||||||||||||||||||||||||||||
Sbjct: 191872 caccagccacgtcatgcagtatggaaacaag 191842
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 650 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193080 agatggtgttttacattgaagcctgtgagtctgggtccatgatgaaccacctgcccccca 193021
Query: 710 acatcgacg 718
|||||||||
Sbjct: 193020 acatcgacg 193012
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 589 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193904 cttcatgtgaaggacctgaacgagaccatccactacatgtacaagcacaggatgtaccaa 193845
Query: 649 aag 651
|||
Sbjct: 193844 aag 193842
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 211 gcgggttcgaatggctggtataactataggcaccagg 247
|||||||||||||||||||||||||||||||||||||
Sbjct: 203931 gcgggttcgaatggctggtataactataggcaccagg 203895
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,980,026
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 19
Length of query: 1114
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1093
Effective length of database: 2,808,413,156
Effective search space: 3069595579508
Effective search space used: 3069595579508
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)