Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033590.1| ATP synthase subunit b, mitochondrial precur... 421 e-118
>ref|NP_001033590.1| ATP synthase subunit b, mitochondrial precursor [Bos taurus].
Length = 256
Score = 421 bits (1083), Expect = e-118
Identities = 217/256 (84%), Positives = 222/256 (86%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVR GLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRFGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVIT ETFSAISTIG LVYIVKKYGAS+
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASV 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
G FADKLNEQKIAQLEEVKQASIKQIQDAID+EKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERLHRVY+E+KNRLDYHISVQNMMRQKEQEHMI WVEK VVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
AD PV+
Sbjct: 241 ADLKLLSKKAQAQPVM 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,242,080
Number of extensions: 1052992
Number of successful extensions: 3329
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3323
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537027.2| PREDICTED: similar to ATP synthase B chain, mit... 412 e-115
>ref|XP_537027.2| PREDICTED: similar to ATP synthase B chain, mitochondrial precursor
[Canis familiaris].
Length = 256
Score = 412 bits (1060), Expect = e-115
Identities = 211/256 (82%), Positives = 222/256 (86%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
ML R+V GPG LQATRIFHTGQPSLAPVPPLPE+GGKVRLGLIP
Sbjct: 1 MLRRMVLSAAAAAAPCLRNAALLGPGALQATRIFHTGQPSLAPVPPLPEYGGKVRLGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGLILY LSKEIYVITAETFSAISTIG+L+Y+VKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYSLSKEIYVITAETFSAISTIGLLIYVVKKYGASI 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
G FADKL+EQKIAQLEEVKQASI+QIQDAID EKSQQALVQKRHYLFDVQRNNIAMALE+
Sbjct: 121 GEFADKLSEQKIAQLEEVKQASIQQIQDAIDTEKSQQALVQKRHYLFDVQRNNIAMALEL 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERLHRVY+E+KNRLDYHISVQNMMR+KEQEHMI WVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYREVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISAQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
AD PVL
Sbjct: 241 ADLKLLAKKAQSQPVL 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,765,789
Number of extensions: 1077095
Number of successful extensions: 3523
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001679.2| ATP synthase subunit b, mitochondrial precursor... 388 e-108
>ref|NP_001679.2| ATP synthase subunit b, mitochondrial precursor [Homo sapiens].
Length = 256
Score = 388 bits (996), Expect = e-108
Identities = 197/256 (76%), Positives = 212/256 (82%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
MLSRVV GPGVLQATR FHTGQP L PVPPLPE+GGKVR GLIP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGLILY LSKEIYVI+AETF+A+S +GV+VY +KKYG +
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
FADKLNEQK+AQLEE KQASI+ IQ+AID EKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERL+RVYKE+KNRLDYHISVQNMMR+KEQEHMI WVEKHVVQSIS QQEKETIAKCI
Sbjct: 181 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
AD PV+
Sbjct: 241 ADLKLLAKKAQAQPVM 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,176,353
Number of extensions: 1070647
Number of successful extensions: 3417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3413
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033855.2| ATP synthase subunit b, mitochondrial precursor... 391 e-109
>ref|NP_033855.2| ATP synthase subunit b, mitochondrial precursor [Mus musculus].
Length = 256
Score = 391 bits (1004), Expect = e-109
Identities = 194/256 (75%), Positives = 214/256 (83%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
MLSRVV GPGVLQATR FHTGQP LAP+PPLPE+GGKVRLGLIP
Sbjct: 1 MLSRVVLSAAATAAPCLKNAAALGPGVLQATRAFHTGQPRLAPLPPLPEYGGKVRLGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGL LY LSKEIYVIT ETFS IS +G++VY++KKYGAS
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFSTISVVGLIVYVIKKYGASF 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
G F DKLNE+KIAQLEEVKQ+S+KQIQDAID+EK+QQALVQKRHYLFDVQRNNIA+ALEV
Sbjct: 121 GEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEV 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERLH+ YKE+KNRLDYHISVQNMMR+KE+EHMI WVEKHVV+SIS QQEKETIAKCI
Sbjct: 181 TYRERLHKAYKEVKNRLDYHISVQNMMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
D P++
Sbjct: 241 EDLKLLAKKAQAQPIM 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,311,632
Number of extensions: 910552
Number of successful extensions: 2902
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2901
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355298.1| PREDICTED: ATP synthase subunit b, mitochond... 437 e-123
Alignment gi|XP_003355292.1| PREDICTED: ATP synthase subunit b, mitochond... 437 e-123
>ref|XP_003355298.1| PREDICTED: ATP synthase subunit b, mitochondrial-like [Sus scrofa].
Length = 256
Score = 437 bits (1124), Expect = e-123
Identities = 228/256 (89%), Positives = 228/256 (89%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
AD PVL
Sbjct: 241 ADLKLLAKKAQAQPVL 256
>ref|XP_003355292.1| PREDICTED: ATP synthase subunit b, mitochondrial [Sus scrofa].
Length = 256
Score = 437 bits (1124), Expect = e-123
Identities = 228/256 (89%), Positives = 228/256 (89%)
Frame = +2
Query: 98 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 277
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 60
Query: 278 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 457
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 120
Query: 458 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 637
GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 638 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 817
TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 240
Query: 818 ADXXXXXXXXXXXPVL 865
AD PVL
Sbjct: 241 ADLKLLAKKAQAQPVL 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,249,199
Number of extensions: 678003
Number of successful extensions: 2151
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007152
(1055 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 424 e-116
Sscrofa_Chr13 84 2e-13
>Sscrofa_Chr04
|| Length = 143465943
Score = 424 bits (214), Expect = e-116
Identities = 253/269 (94%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 788 caggagaaggagacaattgccaagtgcattgcagatctaaagctgctcgcaaagaaggct 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079070 caggagaaggagacaattgccaagtgcattgcagatctaaagctgctcgcaaagaaggct 119079011
Query: 848 caagcacagccagttctgtaattgcatccagcccagttgagatagctagaaacatttgac 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079010 caagcacagccagttctgtaattgcatccagcccagttgagatagctagaaacatttgac 119078951
Query: 908 tgactaaatggaaactagtctgtgagacaaaatctttctgtattgctatctactgaagtt 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119078950 tgactaaatggaaactagtctgtgagacaaaatctttctgtattgctatctactgaagtt 119078891
Query: 968 aagtttatctttct-nnnnnnnnnnnnntgaagtttttgtttcatataatgagagaatta 1026
|||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 119078890 aagtttatctttctaaaagaaaaaaaaatgaagtgtttgtttcatataatgagagaatta 119078831
Query: 1027 aaacagtctattggccagtaagatgtttt 1055
||||||||||||||||||||||||||||
Sbjct: 119078830 caacagtctattggccagtaagatgtttt 119078802
Score = 345 bits (174), Expect = 3e-92
Identities = 180/182 (98%)
Strand = Plus / Minus
Query: 610 gaataacattgctatggccttggaggttacttaccgggaacggctgcatagagtgtacaa 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 119081103 gaataacattgctatggccttggaggttacttaccgggaacggctgcatagagtatacaa 119081044
Query: 670 ggagataaagaatcgcctggactatcacatctctgtacagaatatgatgcgtcagaagga 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119081043 ggagataaagaatcgcctggactatcacatctctgtacagaatatgatgcgtcagaagga 119080984
Query: 730 acaagagcacatgataagatgggtggagaagcacgtggtgcagagcatctctgcacagca 789
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 119080983 acaagagcacatgataagatgggtggagaagcacgtggtgcagagcatctccgcacagca 119080924
Query: 790 gg 791
||
Sbjct: 119080923 gg 119080922
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 319 aggaccctatgtgcttggaactgggcttatcttatatttactttccaaagagatatatgt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085478 aggaccctatgtgcttggaactgggcttatcttatatttactttccaaagagatatatgt 119085419
Query: 379 gataactgcagagaccttctccgccatatcaacaataggtgtacttgtctatatagttaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085418 gataactgcagagaccttctccgccatatcaacaataggtgtacttgtctatatagttaa 119085359
Query: 439 aaaatatggtgcctctattggggcatttgctgataaactcaatgag 484
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085358 aaaatatggtgcctctattggggcatttgctgataaactcaatgag 119085313
Score = 285 bits (144), Expect = 2e-74
Identities = 147/148 (99%)
Strand = Plus / Minus
Query: 174 gggtactgcaggcaacaaggatctttcacacagggcagccaagccttgcccctgtaccac 233
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 119087896 gggtactgcaggcaacaaggatctttcacacaggacagccaagccttgcccctgtaccac 119087837
Query: 234 ctcttcctgaacatggaggaaaagttcgtttggggctgatccctgaggaattcttccagt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119087836 ctcttcctgaacatggaggaaaagttcgtttggggctgatccctgaggaattcttccagt 119087777
Query: 294 tcctttatcctaaaactggagtgacagg 321
||||||||||||||||||||||||||||
Sbjct: 119087776 tcctttatcctaaaactggagtgacagg 119087749
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 1 gcgatacttgcgagcctccatcttgcttctgcccccgacaggttctcctgtccgggtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119090059 gcgatacttgcgagcctccatcttgcttctgcccccgacaggttctcctgtccgggtcac 119090000
Query: 61 tgggacgccaagaccgttctgtggacgccagttgacaatgctgtcccgggtggtactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119089999 tgggacgccaagaccgttctgtggacgccagttgacaatgctgtcccgggtggtactttc 119089940
Query: 121 tgccgccgccgcagcag 137
|||||||||||||||||
Sbjct: 119089939 tgccgccgccgcagcag 119089923
Score = 254 bits (128), Expect = 9e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 483 agcaaaaaattgcccaactggaagaagtgaaacaggcttccatcaaacaaatccaggatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119084678 agcaaaaaattgcccaactggaagaagtgaaacaggcttccatcaaacaaatccaggatg 119084619
Query: 543 caattgatctggagaaatcacagcaggcactggttcaaaagcgccattacctttttgatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119084618 caattgatctggagaaatcacagcaggcactggttcaaaagcgccattacctttttgatg 119084559
Query: 603 tccagagg 610
||||||||
Sbjct: 119084558 tccagagg 119084551
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 134 gcagccccctccctgaagaacgcagccctcctcggtccgggg 175
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119089651 gcagccccctccctgaagaacgcagccctcctcggtccgggg 119089610
>Sscrofa_Chr13
|| Length = 218635234
Score = 83.8 bits (42), Expect = 2e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 594 tttttgatgtccagaggaataacattgctatggccttggaggttacttaccgggaacggc 653
|||||||||| ||||||||||||| ||||||||||||||||||| ||| | || || |||
Sbjct: 155546779 tttttgatgttcagaggaataacactgctatggccttggaggttgcttgctggtaatggc 155546720
Query: 654 tgcatagagtgtacaaggagataaagaatc 683
| ||| |||||||| |||| |||||||||
Sbjct: 155546719 tatataaagtgtacagggaggtaaagaatc 155546690
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,611,190
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 9
Length of query: 1055
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1034
Effective length of database: 2,808,413,156
Effective search space: 2903899203304
Effective search space used: 2903899203304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)