Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033590.1| ATP synthase subunit b, mitochondrial precur... 440 e-123
>ref|NP_001033590.1| ATP synthase subunit b, mitochondrial precursor [Bos taurus].
Length = 256
Score = 440 bits (1131), Expect = e-123
Identities = 225/256 (87%), Positives = 231/256 (90%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVR GLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRFGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVIT ETFSAISTIG LVYIVKKYGAS+
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASV 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
G FADKLNEQKIAQLEEVKQASIKQIQDAID+EKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERLHRVY+E+KNRLDYHISVQNMMRQKEQEHMI WVEK VVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
ADLKLL+KK AQPV+
Sbjct: 241 ADLKLLSKKAQAQPVM 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,776,564
Number of extensions: 1084682
Number of successful extensions: 3374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3369
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537027.2| PREDICTED: similar to ATP synthase B chain, mit... 431 e-121
>ref|XP_537027.2| PREDICTED: similar to ATP synthase B chain, mitochondrial precursor
[Canis familiaris].
Length = 256
Score = 431 bits (1108), Expect = e-121
Identities = 219/256 (85%), Positives = 231/256 (90%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
ML R+V GPG LQATRIFHTGQPSLAPVPPLPE+GGKVRLGLIP
Sbjct: 1 MLRRMVLSAAAAAAPCLRNAALLGPGALQATRIFHTGQPSLAPVPPLPEYGGKVRLGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGLILY LSKEIYVITAETFSAISTIG+L+Y+VKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYSLSKEIYVITAETFSAISTIGLLIYVVKKYGASI 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
G FADKL+EQKIAQLEEVKQASI+QIQDAID EKSQQALVQKRHYLFDVQRNNIAMALE+
Sbjct: 121 GEFADKLSEQKIAQLEEVKQASIQQIQDAIDTEKSQQALVQKRHYLFDVQRNNIAMALEL 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERLHRVY+E+KNRLDYHISVQNMMR+KEQEHMI WVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYREVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISAQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
ADLKLLAKK +QPVL
Sbjct: 241 ADLKLLAKKAQSQPVL 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,323,830
Number of extensions: 1109594
Number of successful extensions: 3730
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3729
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001679.2| ATP synthase subunit b, mitochondrial precursor... 407 e-114
>ref|NP_001679.2| ATP synthase subunit b, mitochondrial precursor [Homo sapiens].
Length = 256
Score = 407 bits (1047), Expect = e-114
Identities = 206/256 (80%), Positives = 221/256 (86%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
MLSRVV GPGVLQATR FHTGQP L PVPPLPE+GGKVR GLIP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGLILY LSKEIYVI+AETF+A+S +GV+VY +KKYG +
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
FADKLNEQK+AQLEE KQASI+ IQ+AID EKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERL+RVYKE+KNRLDYHISVQNMMR+KEQEHMI WVEKHVVQSIS QQEKETIAKCI
Sbjct: 181 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
ADLKLLAKK AQPV+
Sbjct: 241 ADLKLLAKKAQAQPVM 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,714,808
Number of extensions: 1102232
Number of successful extensions: 3516
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3509
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033855.2| ATP synthase subunit b, mitochondrial precursor... 410 e-115
>ref|NP_033855.2| ATP synthase subunit b, mitochondrial precursor [Mus musculus].
Length = 256
Score = 410 bits (1055), Expect = e-115
Identities = 203/256 (79%), Positives = 223/256 (87%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
MLSRVV GPGVLQATR FHTGQP LAP+PPLPE+GGKVRLGLIP
Sbjct: 1 MLSRVVLSAAATAAPCLKNAAALGPGVLQATRAFHTGQPRLAPLPPLPEYGGKVRLGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGL LY LSKEIYVIT ETFS IS +G++VY++KKYGAS
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFSTISVVGLIVYVIKKYGASF 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
G F DKLNE+KIAQLEEVKQ+S+KQIQDAID+EK+QQALVQKRHYLFDVQRNNIA+ALEV
Sbjct: 121 GEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEV 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERLH+ YKE+KNRLDYHISVQNMMR+KE+EHMI WVEKHVV+SIS QQEKETIAKCI
Sbjct: 181 TYRERLHKAYKEVKNRLDYHISVQNMMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
DLKLLAKK AQP++
Sbjct: 241 EDLKLLAKKAQAQPIM 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,800,137
Number of extensions: 938746
Number of successful extensions: 3022
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3019
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355298.1| PREDICTED: ATP synthase subunit b, mitochond... 457 e-129
Alignment gi|XP_003355292.1| PREDICTED: ATP synthase subunit b, mitochond... 457 e-129
>ref|XP_003355298.1| PREDICTED: ATP synthase subunit b, mitochondrial-like [Sus scrofa].
Length = 256
Score = 457 bits (1175), Expect = e-129
Identities = 237/256 (92%), Positives = 237/256 (92%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
ADLKLLAKK AQPVL
Sbjct: 241 ADLKLLAKKAQAQPVL 256
>ref|XP_003355292.1| PREDICTED: ATP synthase subunit b, mitochondrial [Sus scrofa].
Length = 256
Score = 457 bits (1175), Expect = e-129
Identities = 237/256 (92%), Positives = 237/256 (92%)
Frame = +2
Query: 92 MLSRVVXXXXXXXXXXXXXXXXXGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 271
MLSRVV GPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP
Sbjct: 1 MLSRVVLSAAAAAAPSLKNAALLGPGVLQATRIFHTGQPSLAPVPPLPEHGGKVRLGLIP 60
Query: 272 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 451
EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITAETFSAISTIGVLVYIVKKYGASI 120
Query: 452 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 631
GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV
Sbjct: 121 GAFADKLNEQKIAQLEEVKQASIKQIQDAIDLEKSQQALVQKRHYLFDVQRNNIAMALEV 180
Query: 632 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 811
TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI
Sbjct: 181 TYRERLHRVYKEIKNRLDYHISVQNMMRQKEQEHMIRWVEKHVVQSISAQQEKETIAKCI 240
Query: 812 ADLKLLAKKGSAQPVL 859
ADLKLLAKK AQPVL
Sbjct: 241 ADLKLLAKKAQAQPVL 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,583,743
Number of extensions: 696846
Number of successful extensions: 2214
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2214
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007155
(1035 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 412 e-112
Sscrofa_Chr13 76 4e-11
>Sscrofa_Chr04
|| Length = 143465943
Score = 412 bits (208), Expect = e-112
Identities = 245/256 (95%), Gaps = 3/256 (1%)
Strand = Plus / Minus
Query: 782 caggagaaggagacaattgccaagtgcattgcagatctaaagctgctcgcaaagaagggc 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 119079070 caggagaaggagacaattgccaagtgcattgcagatctaaagctgctcgcaaagaagg-c 119079012
Query: 842 tca-gcacagccagttctgtaattgcatccagcccagttgagatagctagaaacatttga 900
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119079011 tcaagcacagccagttctgtaattgcatccagcccagttgagatagctagaaacatttga 119078952
Query: 901 ctgactaaatggaaactagtctgtgagacaaaatctttctgtattgctatctactgaagt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119078951 ctgactaaatggaaactagtctgtgagacaaaatctttctgtattgctatctactgaagt 119078892
Query: 961 taagtttatctttctaaaag-nnnnnnnntgaagtgtttgtttcatataatgagagaatt 1019
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 119078891 taagtttatctttctaaaagaaaaaaaaatgaagtgtttgtttcatataatgagagaatt 119078832
Query: 1020 acaacagtctattggc 1035
||||||||||||||||
Sbjct: 119078831 acaacagtctattggc 119078816
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 604 gaataacattgctatggccttggaggttacttaccgggaacggctgcatagagtatacaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119081103 gaataacattgctatggccttggaggttacttaccgggaacggctgcatagagtatacaa 119081044
Query: 664 ggagataaagaatcgcctggactatcacatctctgtacagaatatgatgcgtcagaagga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119081043 ggagataaagaatcgcctggactatcacatctctgtacagaatatgatgcgtcagaagga 119080984
Query: 724 acaagagcacatgataagatgggtggagaagcacgtggtgcagagcatctctgcacagca 783
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 119080983 acaagagcacatgataagatgggtggagaagcacgtggtgcagagcatctccgcacagca 119080924
Query: 784 gg 785
||
Sbjct: 119080923 gg 119080922
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 313 aggaccctatgtgcttggaactgggcttatcttatatttactttccaaagagatatatgt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085478 aggaccctatgtgcttggaactgggcttatcttatatttactttccaaagagatatatgt 119085419
Query: 373 gataactgcagagaccttctccgccatatcaacaataggtgtacttgtctatatagttaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085418 gataactgcagagaccttctccgccatatcaacaataggtgtacttgtctatatagttaa 119085359
Query: 433 aaaatatggtgcctctattggggcatttgctgataaactcaatgag 478
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119085358 aaaatatggtgcctctattggggcatttgctgataaactcaatgag 119085313
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 168 gggtactgcaggcaacaaggatctttcacacaggacagccaagccttgcccctgtaccac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119087896 gggtactgcaggcaacaaggatctttcacacaggacagccaagccttgcccctgtaccac 119087837
Query: 228 ctcttcctgaacatggaggaaaagttcgtttggggctgatccctgaggaattcttccagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119087836 ctcttcctgaacatggaggaaaagttcgtttggggctgatccctgaggaattcttccagt 119087777
Query: 288 tcctttatcctaaaactggagtgacagg 315
||||||||||||||||||||||||||||
Sbjct: 119087776 tcctttatcctaaaactggagtgacagg 119087749
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 cttgcgagcctccatcttgcttctgcccccgacaggttctcctgtccgggtcactgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119090053 cttgcgagcctccatcttgcttctgcccccgacaggttctcctgtccgggtcactgggac 119089994
Query: 61 gccaagaccgttctgtggacgccagttgacaatgctgtcccgggtggtactttctgccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119089993 gccaagaccgttctgtggacgccagttgacaatgctgtcccgggtggtactttctgccgc 119089934
Query: 121 cgccgcagcag 131
|||||||||||
Sbjct: 119089933 cgccgcagcag 119089923
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 477 agcaaaaaattgcccaactggaagaagtgaaacaggcttccatcaaacaaatccaggatg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119084678 agcaaaaaattgcccaactggaagaagtgaaacaggcttccatcaaacaaatccaggatg 119084619
Query: 537 caattgatctggagaaatcacagcaggcactggttcaaaagcgccattacctttttgatg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119084618 caattgatctggagaaatcacagcaggcactggttcaaaagcgccattacctttttgatg 119084559
Query: 597 tccagagg 604
||||||||
Sbjct: 119084558 tccagagg 119084551
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 128 gcagccccctccctgaagaacgcagccctcctcggtccgggg 169
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119089651 gcagccccctccctgaagaacgcagccctcctcggtccgggg 119089610
>Sscrofa_Chr13
|| Length = 218635234
Score = 75.8 bits (38), Expect = 4e-11
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 588 tttttgatgtccagaggaataacattgctatggccttggaggttacttaccgggaacggc 647
|||||||||| ||||||||||||| ||||||||||||||||||| ||| | || || |||
Sbjct: 155546779 tttttgatgttcagaggaataacactgctatggccttggaggttgcttgctggtaatggc 155546720
Query: 648 tgcatagagtatacaaggagataaagaatc 677
| ||| ||| |||| |||| |||||||||
Sbjct: 155546719 tatataaagtgtacagggaggtaaagaatc 155546690
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,980,241
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 9
Length of query: 1035
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1014
Effective length of database: 2,808,413,156
Effective search space: 2847730940184
Effective search space used: 2847730940184
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)