Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070482.1| granulins [Bos taurus]. 843 0.0
Alignment gi|XP_002694223.1| PREDICTED: multiple epidermal growth factor-... 65 2e-10
Alignment gi|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 65 2e-10
Alignment gi|XP_873582.3| PREDICTED: multiple epidermal growth factor-lik... 65 2e-10
Alignment gi|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus]. 64 4e-10
Alignment gi|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 64 4e-10
Alignment gi|XP_001788490.1| PREDICTED: low-density lipoprotein receptor-... 57 5e-08
Alignment gi|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-... 56 9e-08
Alignment gi|NP_776810.1| latent-transforming growth factor beta-binding ... 54 4e-07
Alignment gi|NP_777131.1| SCO-spondin precursor [Bos taurus]. 54 4e-07
>ref|NP_001070482.1| granulins [Bos taurus].
Length = 587
Score = 843 bits (2177), Expect = 0.0
Identities = 364/524 (69%), Positives = 411/524 (78%), Gaps = 6/524 (1%)
Frame = +1
Query: 67 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 246
MWTLVSWVALVTGLV GTQCPDGQLCPVACCLDP GA+YSCCNPV D+ P LSQ LG P
Sbjct: 1 MWTLVSWVALVTGLVVGTQCPDGQLCPVACCLDPNGATYSCCNPVQDQRPSVLSQRLGRP 60
Query: 247 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 426
C+ C PG+SCILT + TS+CCPFPEAVSC DG HCCP+GFHC+ADG SC +R DTKP
Sbjct: 61 CQADGHCAPGYSCILTVSGTSSCCPFPEAVSCGDGRHCCPRGFHCNADGRSCFQRSDTKP 120
Query: 427 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 606
D + CP+ QF CPNSSTCCTM DGSWGCCPMPQASCC DK+HCCPHGTSCDLA RCL+
Sbjct: 121 LDAVQCPDKQFQCPNSSTCCTMPDGSWGCCPMPQASCCEDKIHCCPHGTSCDLARGRCLS 180
Query: 607 VTNTHPMA-KIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIH 783
T THP+A K+P+ +T + + CPD +SQC + STCCKL +GKYGCCP+PNA CCSDH+H
Sbjct: 181 ATGTHPLAKKMPAHKTKSSVILCPDGQSQCPDGSTCCKLPTGKYGCCPMPNAICCSDHLH 240
Query: 784 CCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWG 963
CCP VCD + KC SKEN A D TKLPAH+VQ+VKCD EVSCPDDYTCCRLQSG WG
Sbjct: 241 CCPQNTVCDLTQSKCLSKEN-ATDLLTKLPAHTVQDVKCDMEVSCPDDYTCCRLQSGAWG 299
Query: 964 CCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVP 1143
CCPFVQAVCC DHVHCCP+G++C+ EKG C+ T+ VPW +K PA LS DL A+E DVP
Sbjct: 300 CCPFVQAVCCEDHVHCCPSGFRCDTEKGVCEQGTRQVPWMKKAPAHLSLLDLGAVEGDVP 359
Query: 1144 CDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTG 1323
CDN GEW CCPAPEAVCCSDHQ+CCPKG+TCV + HCKR K +VTG
Sbjct: 360 CDNVTSCPSSTTCCRLKSGEWACCPAPEAVCCSDHQHCCPKGYTCVARRHCKRGKQVVTG 419
Query: 1324 LNKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPA 1503
L+K+P RAS S P GCDQHTSCPVGQTCCPSL WACC+LPHAVCCEDRQHCCPA
Sbjct: 420 LDKVPAHRASPSHP-RDMGCDQHTSCPVGQTCCPSLRGAWACCKLPHAVCCEDRQHCCPA 478
Query: 1504 GYTCNVKARTCEKEEDSALPANQLAR-----VGDLACGERRFCH 1620
GYTCNVKAR+CEKE D PA +LA +G++ CG R FCH
Sbjct: 479 GYTCNVKARSCEKEVDPVHPAVRLASGPPVGMGNVECGARHFCH 522
Score = 162 bits (411), Expect = 6e-40
Identities = 92/264 (34%), Positives = 113/264 (42%), Gaps = 25/264 (9%)
Frame = +1
Query: 124 CPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLG----------VPCKTKAQCPP 273
CP G C G VP W K HL VPC CP
Sbjct: 316 CPSGFRCDTE-----KGVCEQGTRQVP--WMKKAPAHLSLLDLGAVEGDVPCDNVTSCPS 368
Query: 274 GHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSAD-----GWSCLRRPDTKPSD-- 432
+C + CCP PEAV C D HCCP+G+ C A G + D P+
Sbjct: 369 STTCCRLKSGEWACCPAPEAVCCSDHQHCCPKGYTCVARRHCKRGKQVVTGLDKVPAHRA 428
Query: 433 ------DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHS 594
D+ C + CP TCC L G+W CC +P A CC D+ HCCP G +C++
Sbjct: 429 SPSHPRDMGC-DQHTSCPVGQTCCPSLRGAWACCKLPHAVCCEDRQHCCPAGYTCNVKAR 487
Query: 595 RC-LTVTNTHPMAKIPSQETIKTA-VQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 768
C V HP ++ S + V+C A CH+N TCC S G + CCP TCC
Sbjct: 488 SCEKEVDPVHPAVRLASGPPVGMGNVEC-GARHFCHDNQTCCPDSQGGWACCPYRKGTCC 546
Query: 769 SDHIHCCPHGFVCDPVKKKCFSKE 840
D HCCP GF C KC +E
Sbjct: 547 GDKHHCCPSGFRCAARGTKCLRRE 570
>ref|XP_002694223.1| PREDICTED: multiple epidermal growth factor-like domains 6-like [Bos
taurus].
Length = 1517
Score = 64.7 bits (156), Expect = 2e-10
Identities = 119/527 (22%), Positives = 152/527 (28%), Gaps = 39/527 (7%)
Frame = +1
Query: 124 CPDGQLCP---VACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 294
C +G LC V C G C + P W G C + QCPPG +C
Sbjct: 1086 CLNGGLCDPHTVHCLCPAGWTGDKCQSSCPPSW-------FGEACAQRCQCPPGAACHHV 1138
Query: 295 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNS 474
T E +C P SC CP G G C HCP
Sbjct: 1139 TGEC-HCPPGFTGPSCEQA---CPPGTFGERCGQQC-------------------HCPGE 1175
Query: 475 STCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETI 654
+ C G+ C P + C + G C+L CL S + +
Sbjct: 1176 NQACHPASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCG-CLNGG---------SCDAV 1225
Query: 655 KTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 834
A +CP T C L+ CP ++ C G CDPV C
Sbjct: 1226 TGACRCPAGFL-----GTDCSLA------CPHGRFGPGCAYVCGCGQGAACDPVTGSC-- 1272
Query: 835 KENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCC 1014
SCP T + G CP + +H C
Sbjct: 1273 --------------------------SCPPGRTGVHCEHG----CPQNRFGVNCEHACSC 1302
Query: 1015 PTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXX 1194
G C+ G+C W ++ R A + C N
Sbjct: 1303 RNGGLCHATNGSCSCGLGWTGPHCELACPAGRYGA-ACSLECSCHNHGACEPTSGACRCG 1361
Query: 1195 XGEWG------CCPAPEAVCCSDHQYC-CPKGHTCVG-KGHCKRKKDMVTGLNKMPTRRA 1350
G +G C P C Q C C G C G C GL+ R
Sbjct: 1362 PGFYGQACEHSCPPGFHGAGCQ--QTCQCQHGAPCDPVSGQCL----CPAGLHGQFCERG 1415
Query: 1351 SASQPGNT-TGCDQHTSCPVGQTC--------CPSLSKGWAC------------CQLPHA 1467
+PG+ GC Q C +G C CP G C C L H
Sbjct: 1416 C--EPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCAL-HC 1472
Query: 1468 VC-----CE--DRQHCCPAGYTCNVKARTCEKEEDSALPANQLARVG 1587
C C+ Q C GYT TC + S LP + +G
Sbjct: 1473 SCGGGADCDPVSGQCLCVDGYT----GPTCRQGGPSQLPESPSPALG 1515
Score = 59.7 bits (143), Expect = 8e-09
Identities = 121/529 (22%), Positives = 154/529 (29%), Gaps = 65/529 (12%)
Frame = +1
Query: 115 GTQCPDG-------QLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPP 273
G QCP G Q CP S SC + D+ + CPP
Sbjct: 710 GKQCPAGYHGEDCGQECPAGTFGQNCSGSCSCGDAPCDR------------VTGQCLCPP 757
Query: 274 GHSCILTTNETSNCCPFPE-AVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSD-DILCP 447
G T ++ CP + C++ C G C + +CL RP S CP
Sbjct: 758 GR----TGDDCGADCPEGRWGLGCQEICPPCEHGAACVPETGACLCRPGFMGSRCQDACP 813
Query: 448 NSQFH--CPNSSTC-----CTMLDGSWGCCPMPQASCCG---DKVHC---CPHGTSCDLA 588
F C +C C + G C P C D H C +C
Sbjct: 814 AGWFGPGCQTQCSCANDGLCHPVTGRCSCAPGWTGLSCQRACDSGHWGPDCSFTCNCSAG 873
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTC------CKLSS 726
H C V+ + +CP + QC + + C C +
Sbjct: 874 HGGCDAVSGLCVCEA--GYVGPRCEQRCPQGYFGPGCGRQCQCEHGAACDHVSGACTCPA 931
Query: 727 GKYG-----CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKEN-EAIDFFTKLPAHSV- 885
G G CP H C G CDPV C + PAH
Sbjct: 932 GWRGTFCERACPAGFFGVDCGHACDCSAGVPCDPVSGSCLCPSGRQGPRCAQTCPAHMFG 991
Query: 886 ----QEVKCDTEVSCPDDYTCCRLQSGKWG-----CCPFVQAVCCNDHVHCC--PTGYQC 1032
Q C SC + CR G G CP + + D H C G C
Sbjct: 992 HNCSQACSCFNGASCDPVHGQCRCGPGWTGPTCLQACP--EGLYGEDCQHSCLCQNGGSC 1049
Query: 1033 NIEKGTCDLETQWVPW---KEKIPA--SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXX 1197
+ G C W KE +P + P CD
Sbjct: 1050 DPVSGHCTCPEGWAGLACEKECLPGVFEVGCPHSCGCLNGGLCDPHTVHCLCPAGWTGDK 1109
Query: 1198 GEWGCCPAPEAVCCSDHQYC-CPKGHTC---VGKGHCKRKKDMVTGLNKMPTRRASASQP 1365
+ C P+ C+ Q C CP G C G+ HC G +A P
Sbjct: 1110 CQSSCPPSWFGEACA--QRCQCPPGAACHHVTGECHCP------PGFTGPSCEQAC---P 1158
Query: 1366 GNTTG--CDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAG 1506
T G C Q CP C S AC H C+ R CP G
Sbjct: 1159 PGTFGERCGQQCHCPGENQACHPASGTCACAPGYHGAGCQQR---CPPG 1204
Score = 53.5 bits (127), Expect = 6e-07
Identities = 85/375 (22%), Positives = 111/375 (29%), Gaps = 64/375 (17%)
Frame = +1
Query: 121 QCPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
QCP G C C PG SC P P + G C CP +
Sbjct: 1128 QCPPGAACHHVTGECHCPPGFTGPSCEQACP---PGTFGERCGQQC----HCPGENQACH 1180
Query: 292 TTNETSNCCPFPEAVSC-------RDGLHC-----CPQGFHCSADGWSCLRRPDTKPSD- 432
+ T C P C R G C C G C A +C +D
Sbjct: 1181 PASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCGCLNGGSCDAVTGACRCPAGFLGTDC 1240
Query: 433 DILCPNSQFHCPNSSTC-------CTMLDGSWGC------------CPMPQASCCGDKVH 555
+ CP+ +F + C C + GS C CP + +
Sbjct: 1241 SLACPHGRFGPGCAYVCGCGQGAACDPVTGSCSCPPGRTGVHCEHGCPQNRFGVNCEHAC 1300
Query: 556 CCPHGTSCDLAHSRC---LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----- 711
C +G C + C L T H P+ + C E CHN+ C
Sbjct: 1301 SCRNGGLCHATNGSCSCGLGWTGPHCELACPAG---RYGAAC-SLECSCHNHGACEPTSG 1356
Query: 712 -CKLSSGKYG------CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTK- 867
C+ G YG C P + C C HG CDPV +C F +
Sbjct: 1357 ACRCGPGFYGQACEHSCPPGFHGAGCQQTCQC-QHGAPCDPVSGQCLCPAGLHGQFCERG 1415
Query: 868 -----LPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCC-------PFVQAVCCNDHVHC 1011
Q+ C+ V C C G+ G F C +HC
Sbjct: 1416 CEPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCA---LHC 1472
Query: 1012 -CPTGYQCNIEKGTC 1053
C G C+ G C
Sbjct: 1473 SCGGGADCDPVSGQC 1487
>ref|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 64.7 bits (156), Expect = 2e-10
Identities = 82/354 (23%), Positives = 117/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 471
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 472 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 633
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 634 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 777
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVG 314
Query: 778 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTEVSCPDDY 930
+HC C +G C V C + + D +L + ++CD C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 931 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 5e-08
Identities = 85/380 (22%), Positives = 113/380 (29%), Gaps = 38/380 (10%)
Frame = +1
Query: 124 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 294
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 295 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 432
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYTGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 433 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 549
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 550 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 729
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 730 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTE 909
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 910 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEK 1089
+SCP SG WG F + C C G CN GTC W K +
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1090 IPASLSRPDLLAMERDVPCD 1149
P L ER CD
Sbjct: 527 FPCQDGTYGLNCAER---CD 543
>ref|XP_873582.3| PREDICTED: multiple epidermal growth factor-like domains 6-like [Bos
taurus].
Length = 1517
Score = 64.7 bits (156), Expect = 2e-10
Identities = 119/527 (22%), Positives = 152/527 (28%), Gaps = 39/527 (7%)
Frame = +1
Query: 124 CPDGQLCP---VACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 294
C +G LC V C G C + P W G C + QCPPG +C
Sbjct: 1086 CLNGGLCDPHTVHCLCPAGWTGDKCQSSCPPSW-------FGEACAQRCQCPPGAACHHV 1138
Query: 295 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNS 474
T E +C P SC CP G G C HCP
Sbjct: 1139 TGEC-HCPPGFTGPSCEQA---CPPGTFGERCGQQC-------------------HCPGE 1175
Query: 475 STCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETI 654
+ C G+ C P + C + G C+L CL S + +
Sbjct: 1176 NQACHPASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCG-CLNGG---------SCDAV 1225
Query: 655 KTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 834
A +CP T C L+ CP ++ C G CDPV C
Sbjct: 1226 TGACRCPAGFL-----GTDCSLA------CPHGRFGPGCAYVCGCGQGAACDPVTGSC-- 1272
Query: 835 KENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCC 1014
SCP T + G CP + +H C
Sbjct: 1273 --------------------------SCPPGRTGVHCEHG----CPQNRFGVNCEHACSC 1302
Query: 1015 PTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXX 1194
G C+ G+C W ++ R A + C N
Sbjct: 1303 RNGGLCHATNGSCSCGLGWTGPHCELACPAGRYGA-ACSLECSCHNHGACEPTSGACRCG 1361
Query: 1195 XGEWG------CCPAPEAVCCSDHQYC-CPKGHTCVG-KGHCKRKKDMVTGLNKMPTRRA 1350
G +G C P C Q C C G C G C GL+ R
Sbjct: 1362 PGFYGQACEHSCPPGFHGAGCQ--QTCQCQHGAPCDPVSGQCL----CPAGLHGQFCERG 1415
Query: 1351 SASQPGNT-TGCDQHTSCPVGQTC--------CPSLSKGWAC------------CQLPHA 1467
+PG+ GC Q C +G C CP G C C L H
Sbjct: 1416 C--EPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCAL-HC 1472
Query: 1468 VC-----CE--DRQHCCPAGYTCNVKARTCEKEEDSALPANQLARVG 1587
C C+ Q C GYT TC + S LP + +G
Sbjct: 1473 SCGGGADCDPVSGQCLCVDGYT----GPTCRQGGPSQLPESPSPALG 1515
Score = 59.7 bits (143), Expect = 8e-09
Identities = 121/529 (22%), Positives = 154/529 (29%), Gaps = 65/529 (12%)
Frame = +1
Query: 115 GTQCPDG-------QLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPP 273
G QCP G Q CP S SC + D+ + CPP
Sbjct: 710 GKQCPAGYHGEDCGQECPAGTFGQNCSGSCSCGDAPCDR------------VTGQCLCPP 757
Query: 274 GHSCILTTNETSNCCPFPE-AVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSD-DILCP 447
G T ++ CP + C++ C G C + +CL RP S CP
Sbjct: 758 GR----TGDDCGADCPEGRWGLGCQEICPPCEHGAACVPETGACLCRPGFMGSRCQDACP 813
Query: 448 NSQFH--CPNSSTC-----CTMLDGSWGCCPMPQASCCG---DKVHC---CPHGTSCDLA 588
F C +C C + G C P C D H C +C
Sbjct: 814 AGWFGPGCQTQCSCANDGLCHPVTGRCSCAPGWTGLSCQRACDSGHWGPDCSFTCNCSAG 873
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTC------CKLSS 726
H C V+ + +CP + QC + + C C +
Sbjct: 874 HGGCDAVSGLCVCEA--GYVGPRCEQRCPQGYFGPGCGRQCQCEHGAACDHVSGACTCPA 931
Query: 727 GKYG-----CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKEN-EAIDFFTKLPAHSV- 885
G G CP H C G CDPV C + PAH
Sbjct: 932 GWRGTFCERACPAGFFGVDCGHACDCSAGVPCDPVSGSCLCPSGRQGPRCAQTCPAHMFG 991
Query: 886 ----QEVKCDTEVSCPDDYTCCRLQSGKWG-----CCPFVQAVCCNDHVHCC--PTGYQC 1032
Q C SC + CR G G CP + + D H C G C
Sbjct: 992 HNCSQACSCFNGASCDPVHGQCRCGPGWTGPTCLQACP--EGLYGEDCQHSCLCQNGGSC 1049
Query: 1033 NIEKGTCDLETQWVPW---KEKIPA--SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXX 1197
+ G C W KE +P + P CD
Sbjct: 1050 DPVSGHCTCPEGWAGLACEKECLPGVFEVGCPHSCGCLNGGLCDPHTVHCLCPAGWTGDK 1109
Query: 1198 GEWGCCPAPEAVCCSDHQYC-CPKGHTC---VGKGHCKRKKDMVTGLNKMPTRRASASQP 1365
+ C P+ C+ Q C CP G C G+ HC G +A P
Sbjct: 1110 CQSSCPPSWFGEACA--QRCQCPPGAACHHVTGECHCP------PGFTGPSCEQAC---P 1158
Query: 1366 GNTTG--CDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAG 1506
T G C Q CP C S AC H C+ R CP G
Sbjct: 1159 PGTFGERCGQQCHCPGENQACHPASGTCACAPGYHGAGCQQR---CPPG 1204
Score = 53.5 bits (127), Expect = 6e-07
Identities = 85/375 (22%), Positives = 111/375 (29%), Gaps = 64/375 (17%)
Frame = +1
Query: 121 QCPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
QCP G C C PG SC P P + G C CP +
Sbjct: 1128 QCPPGAACHHVTGECHCPPGFTGPSCEQACP---PGTFGERCGQQC----HCPGENQACH 1180
Query: 292 TTNETSNCCPFPEAVSC-------RDGLHC-----CPQGFHCSADGWSCLRRPDTKPSD- 432
+ T C P C R G C C G C A +C +D
Sbjct: 1181 PASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCGCLNGGSCDAVTGACRCPAGFLGTDC 1240
Query: 433 DILCPNSQFHCPNSSTC-------CTMLDGSWGC------------CPMPQASCCGDKVH 555
+ CP+ +F + C C + GS C CP + +
Sbjct: 1241 SLACPHGRFGPGCAYVCGCGQGAACDPVTGSCSCPPGRTGVHCEHGCPQNRFGVNCEHAC 1300
Query: 556 CCPHGTSCDLAHSRC---LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----- 711
C +G C + C L T H P+ + C E CHN+ C
Sbjct: 1301 SCRNGGLCHATNGSCSCGLGWTGPHCELACPAG---RYGAAC-SLECSCHNHGACEPTSG 1356
Query: 712 -CKLSSGKYG------CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTK- 867
C+ G YG C P + C C HG CDPV +C F +
Sbjct: 1357 ACRCGPGFYGQACEHSCPPGFHGAGCQQTCQC-QHGAPCDPVSGQCLCPAGLHGQFCERG 1415
Query: 868 -----LPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCC-------PFVQAVCCNDHVHC 1011
Q+ C+ V C C G+ G F C +HC
Sbjct: 1416 CEPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCA---LHC 1472
Query: 1012 -CPTGYQCNIEKGTC 1053
C G C+ G C
Sbjct: 1473 SCGGGADCDPVSGQC 1487
>ref|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 63.9 bits (154), Expect = 4e-10
Identities = 82/354 (23%), Positives = 117/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 471
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 472 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 633
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 634 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 777
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYPGERCQDECPVG 314
Query: 778 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTEVSCPDDY 930
+HC C +G C V C + + D +L + ++CD C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 931 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 5e-08
Identities = 85/380 (22%), Positives = 113/380 (29%), Gaps = 38/380 (10%)
Frame = +1
Query: 124 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 294
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 295 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 432
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYPGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 433 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 549
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 550 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 729
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 730 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTE 909
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 910 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEK 1089
+SCP SG WG F + C C G CN GTC W K +
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1090 IPASLSRPDLLAMERDVPCD 1149
P L ER CD
Sbjct: 527 FPCQDGTYGLNCAER---CD 543
>ref|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 63.9 bits (154), Expect = 4e-10
Identities = 82/354 (23%), Positives = 117/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 471
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 472 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 633
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 634 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 777
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYPGERCQDECPVG 314
Query: 778 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTEVSCPDDY 930
+HC C +G C V C + + D +L + ++CD C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 931 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 5e-08
Identities = 85/380 (22%), Positives = 113/380 (29%), Gaps = 38/380 (10%)
Frame = +1
Query: 124 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 294
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 295 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 432
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYPGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 433 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 549
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 550 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 729
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 730 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTE 909
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 910 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEK 1089
+SCP SG WG F + C C G CN GTC W K +
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1090 IPASLSRPDLLAMERDVPCD 1149
P L ER CD
Sbjct: 527 FPCQDGTYGLNCAER---CD 543
>ref|XP_001788490.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like,
partial [Bos taurus].
Length = 4579
Score = 57.0 bits (136), Expect = 5e-08
Identities = 98/473 (20%), Positives = 147/473 (31%), Gaps = 44/473 (9%)
Frame = +1
Query: 277 HSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQ 456
++C TN +C F V + CP G ++D +C+ +P + C
Sbjct: 906 NACSRPTNPNGDCSHFCFPVPNSQRVCGCPYGMSLASDHLTCVENASREPPVE-QCGTLS 964
Query: 457 FHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKI 636
F C N C L + C D+V C +C C + P
Sbjct: 965 FSCHNGR--CVPLQ--YRCDGFDDCLDNSDEVQCTTSNATCSPLAFECKREGHCIP---- 1016
Query: 637 PSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPV 816
+ +C D E C + S + C TC D+ C P +VCD
Sbjct: 1017 -------SMWRC-DGEDDCLDGSDEQNCPTRAPTSCRADQFTC--DNNFCIPRSWVCDT- 1065
Query: 817 KKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDD------YTC-----CRLQSGKWG 963
+N+ D + + Q T+ CPD + C C S + G
Sbjct: 1066 -------DNDCKDGSDEKSCNYTQTCS-PTQFHCPDHRCIALTFVCDGTKDCADGSDEIG 1117
Query: 964 C---CPFVQAVC-----CNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDL 1119
C C Q C C + C + C+ D T+ P + D
Sbjct: 1118 CVINCTASQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTR--------PPGMCHQDE 1169
Query: 1120 LAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHT------CV 1281
+ D C E CP C + C G+ C
Sbjct: 1170 FQCQEDGICIPKTWECDGHEDCLQGSDEHNGCPPKT---CHPSHFVCQNGNCIYRNWLCD 1226
Query: 1282 GKGHC---KRKKDMVTGLNKMPTRRASASQPGNT------TGCDQHTSCPVG-------- 1410
G C +KD T + P+ + PG++ CD + CP G
Sbjct: 1227 GDNDCGDMSDEKDCPTQPFQCPSWQWQC--PGHSICVNLSAVCDGVSDCPGGTDESPLCN 1284
Query: 1411 QTCCPSLSKGWA--CCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSALP 1563
Q C + G C Q P+ C+ CP GY ++TCE ++ P
Sbjct: 1285 QNSCSDSNGGCTHQCIQGPYGAQCQ-----CPLGYLLGNDSKTCEDIDECRTP 1332
Score = 54.7 bits (130), Expect = 2e-07
Identities = 83/335 (24%), Positives = 114/335 (34%), Gaps = 59/335 (17%)
Frame = +1
Query: 196 PVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE----TSNCCPFPEAVSCRDGLHCC 363
PV + S H G + +C C+ ++E TSN P A C+ HC
Sbjct: 956 PVEQCGTLSFSCHNGRCVPLQYRCDGFDDCLDNSDEVQCTTSNATCSPLAFECKREGHCI 1015
Query: 364 PQGFHC--------SADGWSC-LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG-- 510
P + C +D +C R P + +D C N+ F P S C T D G
Sbjct: 1016 PSMWRCDGEDDCLDGSDEQNCPTRAPTSCRADQFTCDNN-FCIPRSWVCDTDNDCKDGSD 1074
Query: 511 --CCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAK--IPSQETIKTAVQCPD 678
C Q +C + HC H RC+ +T K + I + C
Sbjct: 1075 EKSCNYTQ-TCSPTQFHCPDH---------RCIALTFVCDGTKDCADGSDEIGCVINCTA 1124
Query: 679 AESQCHNNSTC------------CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKK 822
++ C +N C C S + C P C D C G +C P
Sbjct: 1125 SQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTRPPGMCHQDEFQCQEDG-ICIPKTW 1183
Query: 823 KC--------FSKENEAIDFFTKLPAHSV--------QEVKCDTEVSCPD--DYTCCRLQ 948
+C S E+ T P+H V + CD + C D D C Q
Sbjct: 1184 ECDGHEDCLQGSDEHNGCPPKTCHPSHFVCQNGNCIYRNWLCDGDNDCGDMSDEKDCPTQ 1243
Query: 949 -----SGKWGC-----CPFVQAVCCNDHVHCCPTG 1023
S +W C C + AVC D V CP G
Sbjct: 1244 PFQCPSWQWQCPGHSICVNLSAVC--DGVSDCPGG 1276
>ref|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Bos taurus].
Length = 4680
Score = 56.2 bits (134), Expect = 9e-08
Identities = 103/478 (21%), Positives = 148/478 (30%), Gaps = 49/478 (10%)
Frame = +1
Query: 277 HSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQ 456
++C TN +C F V + CP G ++D +C+ +P + C
Sbjct: 1007 NACSRPTNPNGDCSHFCFPVPNSQRVCGCPYGMSLASDHLTCVENASREPPVE-QCGTLS 1065
Query: 457 FHCPNSSTCCTML----DGSWGCCP-MPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTH 621
F C N C L DG C +A C C P C C
Sbjct: 1066 FSCHNGR--CVPLQYRCDGFDDCLDNSDEAQCTTSNATCSPLAFECK-REGHC------- 1115
Query: 622 PMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGF 801
IPS +C D E C + S + C TC D+ C P +
Sbjct: 1116 ----IPSMW------RC-DGEDDCLDGSDEQNCPTRAPTSCRADQFTC--DNNFCIPRSW 1162
Query: 802 VCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDD------YTC-----CRLQ 948
VCD +N+ D + + Q T+ CPD + C C
Sbjct: 1163 VCDT--------DNDCKDGSDEKSCNYTQTCS-PTQFHCPDHRCIALTFVCDGTKDCADG 1213
Query: 949 SGKWGC---CPFVQAVC-----CNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASL 1104
S + GC C Q C C + C + C+ D T+ P +
Sbjct: 1214 SDEIGCVINCTASQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTR--------PPGM 1265
Query: 1105 SRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHT--- 1275
D + D C E CP C + C G+
Sbjct: 1266 CHQDEFQCQEDGICIPKTWECDGHEDCLQGSDEHNGCPPKT---CHPSHFVCQNGNCIYR 1322
Query: 1276 ---CVGKGHC---KRKKDMVTGLNKMPTRRASASQPGNT------TGCDQHTSCPVG--- 1410
C G C +KD T + P+ + PG++ CD + CP G
Sbjct: 1323 NWLCDGDNDCGDMSDEKDCPTQPFQCPSWQWQC--PGHSICVNLSAVCDGVSDCPGGTDE 1380
Query: 1411 -----QTCCPSLSKGWA--CCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSALP 1563
Q C + G C Q P+ C+ CP GY ++TCE ++ P
Sbjct: 1381 SPLCNQNSCSDSNGGCTHQCIQGPYGAQCQ-----CPLGYLLGNDSKTCEDIDECRTP 1433
Score = 54.7 bits (130), Expect = 2e-07
Identities = 83/335 (24%), Positives = 114/335 (34%), Gaps = 59/335 (17%)
Frame = +1
Query: 196 PVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE----TSNCCPFPEAVSCRDGLHCC 363
PV + S H G + +C C+ ++E TSN P A C+ HC
Sbjct: 1057 PVEQCGTLSFSCHNGRCVPLQYRCDGFDDCLDNSDEAQCTTSNATCSPLAFECKREGHCI 1116
Query: 364 PQGFHC--------SADGWSC-LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG-- 510
P + C +D +C R P + +D C N+ F P S C T D G
Sbjct: 1117 PSMWRCDGEDDCLDGSDEQNCPTRAPTSCRADQFTCDNN-FCIPRSWVCDTDNDCKDGSD 1175
Query: 511 --CCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAK--IPSQETIKTAVQCPD 678
C Q +C + HC H RC+ +T K + I + C
Sbjct: 1176 EKSCNYTQ-TCSPTQFHCPDH---------RCIALTFVCDGTKDCADGSDEIGCVINCTA 1225
Query: 679 AESQCHNNSTC------------CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKK 822
++ C +N C C S + C P C D C G +C P
Sbjct: 1226 SQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTRPPGMCHQDEFQCQEDG-ICIPKTW 1284
Query: 823 KC--------FSKENEAIDFFTKLPAHSV--------QEVKCDTEVSCPD--DYTCCRLQ 948
+C S E+ T P+H V + CD + C D D C Q
Sbjct: 1285 ECDGHEDCLQGSDEHNGCPPKTCHPSHFVCQNGNCIYRNWLCDGDNDCGDMSDEKDCPTQ 1344
Query: 949 -----SGKWGC-----CPFVQAVCCNDHVHCCPTG 1023
S +W C C + AVC D V CP G
Sbjct: 1345 PFQCPSWQWQCPGHSICVNLSAVC--DGVSDCPGG 1377
>ref|NP_776810.1| latent-transforming growth factor beta-binding protein 2 [Bos
taurus].
Length = 1963
Score = 53.9 bits (128), Expect = 4e-07
Identities = 84/330 (25%), Positives = 114/330 (34%), Gaps = 20/330 (6%)
Frame = +1
Query: 124 CPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE 303
CPDG+ C PG SY+C +PC+ + G SC+ NE
Sbjct: 1093 CPDGK-----CVNSPG--SYTC-----------------LPCE-EGYRGQGGSCV-DVNE 1126
Query: 304 --TSNCCPFPEAVSCRDGLHC-CPQGFHCSADGWSCLRRPDTKPSDDIL----CPNSQ-F 459
T C ++ C C QG+ + D C K D+ CP
Sbjct: 1127 CLTPGVCTHGTCINLEGSFRCSCEQGYEVTPDEKGC------KDVDECAIRASCPTGLCL 1180
Query: 460 HCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHC-----CPHGTSCDLAHS-RCLTVTNTH 621
+ S TC G W + C D C CP G + A S C +
Sbjct: 1181 NTEGSFTCSACESGYW---VNEDGTACEDLDECAFPGVCPSGVCTNTAGSFSCRDCEAGY 1237
Query: 622 PMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGC-CP----LPNATCCSDHIHC 786
+ + T + +C D +S C CK ++G Y C CP L N T C D C
Sbjct: 1238 QPSALG--HTCEDVDECEDPQSSCLGGE--CKNTAGSYQCLCPPGFQLANGTVCEDVDEC 1293
Query: 787 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGC 966
+ C P + +C + F L A V D SC D C
Sbjct: 1294 VGEEY-CAP-RGECLNSHGS----FFCLCADGF--VSADGGTSCQDVDECAVTDR----- 1340
Query: 967 CPFVQAVCCNDHVHC-CPTGYQCNIEKGTC 1053
C Q V + +C C TG+Q + E G C
Sbjct: 1341 CVGGQCVNTDGSFNCVCETGFQPSPESGEC 1370
>ref|NP_777131.1| SCO-spondin precursor [Bos taurus].
Length = 5146
Score = 53.9 bits (128), Expect = 4e-07
Identities = 99/421 (23%), Positives = 135/421 (32%), Gaps = 66/421 (15%)
Frame = +1
Query: 85 WVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQ 264
W V G CP+G L CL+P P +W + P T Q
Sbjct: 1297 WPCRAVACVEGCFCPEGTLLHGGVCLEPAAC--------PCEWGGSF-----FPPGTVLQ 1343
Query: 265 CPPGHSCILTTNETSNCC---------PFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD 417
G++C T E+ C P P C +G C + HC GW C + D
Sbjct: 1344 KDCGNNC--TCRESQWLCGDDGGRCVEPGP---GCAEGETPCRESGHCVPHGWLCDNQDD 1398
Query: 418 TKPSDD------ILCPNSQFHCPNSSTCCTML---DGSWGC--------CPMPQASCCGD 546
D +C Q C S C ++ DG C CP PQ S
Sbjct: 1399 CGDGSDEEGCATRVCGEGQVSC-CSGRCLPLVLLCDGQDDCGDGMDEQGCPCPQDSLTCA 1457
Query: 547 KVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC---CK 717
HC P CD H C + +E+ V C E C + TC +
Sbjct: 1458 DGHCLPPARLCD-GHPDCPDGAD---------EESCLGQVDCAPGEVSC-VDGTCLGAIQ 1506
Query: 718 LSSGKYGC----------CPLPN-----------ATCCSDHIHCCPH-----GFVCDPVK 819
L G + C CPLP+ + S +H P C P+
Sbjct: 1507 LCDGVWDCLDGGDEGPGHCPLPSLPTPPAGTLPGPSAVSWKLHLPPWPVSALRLPCGPLD 1566
Query: 820 KKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPD-------DYTCC--RLQSGKWGCCP 972
C S E + + +CD E C D D C + C
Sbjct: 1567 FACGSGE------------CAPRGWRCDGEEDCADGSDESGCDRPCAPHHAPCARGSHCV 1614
Query: 973 FVQAVCCNDHVHCCPTGYQCNIEKGTCD-LETQWVPWKEKIPA-SLSRPDLLAMERDVPC 1146
+ +C D V CP G + + G C+ L+ P + +P S PD L + C
Sbjct: 1615 AAEQLC--DGVPHCPDG--SDEDPGACERLQAPGGPNRTGLPCPEYSCPDGLCIGFQQVC 1670
Query: 1147 D 1149
D
Sbjct: 1671 D 1671
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,132,338
Number of extensions: 2082567
Number of successful extensions: 11816
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 11306
Number of HSP's successfully gapped: 28
Length of query: 563
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 456
Effective length of database: 14,140,958
Effective search space: 6448276848
Effective search space used: 6448276848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537620.2| PREDICTED: similar to granulin isoform 1 precur... 700 0.0
Alignment gi|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple... 62 1e-09
Alignment gi|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis fam... 61 3e-09
Alignment gi|XP_535946.2| PREDICTED: similar to Low-density lipoprotein r... 59 2e-08
Alignment gi|XP_538847.2| PREDICTED: similar to Neurogenic locus notch ho... 58 2e-08
Alignment gi|XP_538245.2| PREDICTED: similar to Low-density lipoprotein r... 57 5e-08
Alignment gi|XP_542124.2| PREDICTED: similar to Fibrillin-3 precursor [Ca... 54 3e-07
Alignment gi|XP_533343.2| PREDICTED: similar to Low-density lipoprotein r... 51 4e-06
>ref|XP_537620.2| PREDICTED: similar to granulin isoform 1 precursor [Canis
familiaris].
Length = 642
Score = 700 bits (1807), Expect = 0.0
Identities = 312/514 (60%), Positives = 354/514 (68%), Gaps = 17/514 (3%)
Frame = +1
Query: 58 RWTMWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHL 237
R TMWTLVSWVALV GLVAGTQCPDGQ CPVACCLDPGGASYSCCNP+P KWP LS+HL
Sbjct: 117 RQTMWTLVSWVALVAGLVAGTQCPDGQFCPVACCLDPGGASYSCCNPIPGKWPTELSRHL 176
Query: 238 GVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD 417
G PC+ A C PG+SC+LT TS+CCPFPEAVSC DG HCCP+G+HCSADG SC +R
Sbjct: 177 GRPCQLDAHCSPGYSCLLTILGTSSCCPFPEAVSCADGRHCCPRGYHCSADGRSCFQRSG 236
Query: 418 TK---------PSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHG 570
P I CP+SQF CPNSSTCCTMLDGSWGCCPMPQASCC DKVHCCPHG
Sbjct: 237 AAGVETGLWGFPLGAIQCPDSQFLCPNSSTCCTMLDGSWGCCPMPQASCCEDKVHCCPHG 296
Query: 571 TSCDLAHSRCLTVTNTHPMA-KIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCP 747
TSCDLAH+RCLT T +HP+A KIP+Q + + V CPD SQC + STCC+L SGKYGCCP
Sbjct: 297 TSCDLAHARCLTATGSHPLAKKIPAQRSNRAGVICPDGRSQCPDGSTCCELPSGKYGCCP 356
Query: 748 LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDD 927
+P+A CCSDH+HCCP VCD V+ KC SKEN A D TKLPAH+VQEVKCD EVSCPD
Sbjct: 357 MPHAICCSDHLHCCPQDTVCDLVRSKCLSKEN-ATDLLTKLPAHTVQEVKCDMEVSCPDG 415
Query: 928 YTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLS 1107
YTCCRLQSG WGCCPF QAVCC DHVHCCP G++C+ KGTC+ +PW + PA L
Sbjct: 416 YTCCRLQSGAWGCCPFAQAVCCEDHVHCCPAGFKCDTAKGTCEQNAPQMPWMVQAPARLQ 475
Query: 1108 RPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGK 1287
+ A E DVPCDN GEWGCCPAPEAVCC D Q+CCP G+TC K
Sbjct: 476 LLNPQATENDVPCDNVTSCPSSNTCCRLMSGEWGCCPAPEAVCCEDRQHCCPAGYTCNVK 535
Query: 1288 GH-CKRKKDMVTGLNKMPTRRASASQPG-NTTGCDQHTSCPV-----GQTCCPSLSKGWA 1446
C+++ D + R A + G C + P QTCC GWA
Sbjct: 536 ARSCEKEADS----THLAVRLARGPRVGVGNVKCGEGHLPPAPTHHDNQTCCRDSRGGWA 591
Query: 1447 CCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEE 1548
CC VCC D++HCCP G+ C K C + E
Sbjct: 592 CCPYHQGVCCADQRHCCPTGFHCGAKGTKCLRRE 625
Score = 176 bits (446), Expect = 6e-44
Identities = 102/315 (32%), Positives = 137/315 (43%), Gaps = 60/315 (19%)
Frame = +1
Query: 112 AGTQCPDGQL-CP--VACCLDPGGASYSCCNPVPDKW-------------------PKAL 225
AG CPDG+ CP CC P G Y CC P+P K L
Sbjct: 327 AGVICPDGRSQCPDGSTCCELPSG-KYGCC-PMPHAICCSDHLHCCPQDTVCDLVRSKCL 384
Query: 226 SQHLG--------------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCC 363
S+ V C + CP G++C + CCPF +AV C D +HCC
Sbjct: 385 SKENATDLLTKLPAHTVQEVKCDMEVSCPDGYTCCRLQSGAWGCCPFAQAVCCEDHVHCC 444
Query: 364 PQGFHCSADGWSCLRRPDTKP-----------------SDDILCPNSQFHCPNSSTCCTM 492
P GF C +C + P +D+ C N CP+S+TCC +
Sbjct: 445 PAGFKCDTAKGTCEQNAPQMPWMVQAPARLQLLNPQATENDVPCDNVT-SCPSSNTCCRL 503
Query: 493 LDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRC-LTVTNTHPMAKIPSQETIKTA-V 666
+ G WGCCP P+A CC D+ HCCP G +C++ C +TH ++ + V
Sbjct: 504 MSGEWGCCPAPEAVCCEDRQHCCPAGYTCNVKARSCEKEADSTHLAVRLARGPRVGVGNV 563
Query: 667 QC-----PDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCF 831
+C P A + H+N TCC+ S G + CCP CC+D HCCP GF C KC
Sbjct: 564 KCGEGHLPPAPTH-HDNQTCCRDSRGGWACCPYHQGVCCADQRHCCPTGFHCGAKGTKCL 622
Query: 832 SKENEAIDFFTKLPA 876
+E+ D + PA
Sbjct: 623 RRESLRWDMPLRDPA 637
Score = 56.6 bits (135), Expect = 7e-08
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +1
Query: 1381 CDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSAL 1560
C C G +C ++ +CC P AV C D +HCCP GY C+ R+C + +A
Sbjct: 180 CQLDAHCSPGYSCLLTILGTSSCCPFPEAVSCADGRHCCPRGYHCSADGRSCFQRSGAAG 239
Query: 1561 PANQL--ARVGDLACGERRFCHKTIPAAETVLE--LGLLFLRQGICC 1689
L +G + C + +F T+L+ G + Q CC
Sbjct: 240 VETGLWGFPLGAIQCPDSQFLCPNSSTCCTMLDGSWGCCPMPQASCC 286
>ref|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris].
Length = 1534
Score = 62.4 bits (150), Expect = 1e-09
Identities = 103/471 (21%), Positives = 133/471 (28%), Gaps = 46/471 (9%)
Frame = +1
Query: 151 ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPE 330
AC PG C N P W G C + QCPPG +C T E
Sbjct: 1112 ACLCPPGWRGSRCENACPHGW-------FGEACAQRCQCPPGAACHHVTGE--------- 1155
Query: 331 AVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQF--------HCPNSSTCC 486
CR CP+GF T P + CP F HCP + C
Sbjct: 1156 ---CR-----CPRGF--------------TGPGCEQACPPGTFGESCGQKCHCPGENQAC 1193
Query: 487 TMLDGSWGCCPMPQASCC-----------GDKVHC-CPHGTSCDLAHSRCLTVTNTHPMA 630
G+ C S C G + C C +G SCD A CL P
Sbjct: 1194 HPALGTCVCAAGYHGSGCRQRCPPGRFGPGCEQPCGCLNGGSCDAATGACLC-----PAG 1248
Query: 631 KIPSQETIKTAVQCPDAE--SQCHNNSTC-----CKLSSGKYGCCPLPNATCCS------ 771
+ + ++ CP C + C C +G C P T C
Sbjct: 1249 FLGAD----CSLSCPQGHFGPGCAHVCGCGQAVTCDPVTGSCACPPGTTGTHCEHGCPQN 1304
Query: 772 ------DHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYT 933
+H+ C +G +C C + C E SC ++ T
Sbjct: 1305 RFGVNCEHVCSCRNGGLCHASDGSCSCGLGWTGPNCEQACPPGHYGAACRLECSCQNNGT 1364
Query: 934 CCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRP 1113
C +G C P C H CP G+ + C+
Sbjct: 1365 -CEPTTGACRCGPGFYGQACQ---HACPPGFHGAGCRAACE------------------- 1401
Query: 1114 DLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYC-CPKGHTCVGKG 1290
+ CD E GC P C +H C C G C
Sbjct: 1402 ----CQHGASCDPVSGQCVCPAGFYGQLCEKGCEPGSFGEGCREH--CDCEMGAAC---- 1451
Query: 1291 HCKRKKDMVTGLNKMPTRRASASQPGNT------TGCDQHTSCPVGQTCCP 1425
D +TG P R A+ + GC SC G C P
Sbjct: 1452 ------DPITGQCLCPPGRTGATCDLDCRPDFFGPGCALRCSCGGGAACDP 1496
Score = 57.0 bits (136), Expect = 5e-08
Identities = 121/552 (21%), Positives = 159/552 (28%), Gaps = 79/552 (14%)
Frame = +1
Query: 100 TGLVAGTQCPDGQL---CPVACCLDPGGASYSCCNPV---------PDKWPKALSQHLGV 243
TGL C G+ C C PG S + + P + H G
Sbjct: 818 TGLSCQRACDGGRWGPDCSHPCTCSPGHGSCDAVSGLCVCEAGYTGPRCEQRCPQGHFGP 877
Query: 244 PCKTKAQCPPGHSCILTTNETSNCCPFPEA----------------VSCRDGLHCCPQGF 375
C + QC G +C + S C P + CR G+ C G
Sbjct: 878 GCGRQCQCEHGAAC----DHVSGACTCPAGWRGALCERACPAGFFGLDCR-GVCDCAAGA 932
Query: 376 HCSADGWSCLRRPDTK-PSDDILCPNSQFHCPNSSTC-------CTMLDGSWGCCPMPQA 531
C + SCL + P D CP + S TC C + G C P
Sbjct: 933 PCDSVSGSCLCPAGRQGPRCDQACPAHTYGHNCSQTCSCFNGASCDPVHGQCHCGPGWMG 992
Query: 532 SCCGDKV-------HC-----CPHGTSCDLAHSRCLTVTNTHPMAK----IPSQ--ETIK 657
S C + +C C HG +CD C +A +P + K
Sbjct: 993 STCLEACPTGSYGQNCQHTCLCQHGGTCDPVSGHCTCPEGWTGLACEEECLPGRFGAGCK 1052
Query: 658 TAVQCPDAESQCHNNSTCCKLSSGKYG------CCPLPNATCCSDHIHCCPHGFVCDPVK 819
+ +C + C S C +G G C C +H C G C V
Sbjct: 1053 HSCRCLNG-GDCDRRSGRCLCPAGWTGDQCQSLCAEGTFGVRCEEHC-ACRRGATCHHVT 1110
Query: 820 KKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTC------CRLQSGKWG------ 963
C H C CP C CR G G
Sbjct: 1111 GACLCPPGWRGSRCENACPHGWFGEACAQRCQCPPGAACHHVTGECRCPRGFTGPGCEQA 1170
Query: 964 CCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQW--VPWKEKIPASLSRPDLLAMERD 1137
C P C HC C+ GTC + +++ P P E+
Sbjct: 1171 CPPGTFGESCGQKCHCPGENQACHPALGTCVCAAGYHGSGCRQRCPPGRFGP---GCEQP 1227
Query: 1138 VPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGH---CKRKK 1308
C N G C P +D CP+GH G H C +
Sbjct: 1228 CGCLNGGSCDAAT----------GACLCPAGFLGADCSLSCPQGHFGPGCAHVCGCGQAV 1277
Query: 1309 --DMVTGLNKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCED 1482
D VTG S + P TTG T C G CP G C H C +
Sbjct: 1278 TCDPVTG---------SCACPPGTTG----THCEHG---CPQNRFGVNC---EHVCSCRN 1318
Query: 1483 RQHCCPAGYTCN 1518
C + +C+
Sbjct: 1319 GGLCHASDGSCS 1330
Score = 54.7 bits (130), Expect = 3e-07
Identities = 133/597 (22%), Positives = 164/597 (27%), Gaps = 92/597 (15%)
Frame = +1
Query: 100 TGLVAGTQCPDG-------QLCPV------------ACCLDPGGASYSCCNPVPDKWPKA 222
TG G CP+G ++CP AC PG C + P W
Sbjct: 731 TGDDCGADCPEGRWGLGCQEICPACEHGAACEPGTGACLCRPGYVGSRCQDTCPAGW--- 787
Query: 223 LSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCR----------DGLH---CC 363
G C+ + C C T S C P +SC+ D H C
Sbjct: 788 ----FGPGCQMRCSCANDGLCHPVTGHCS-CAPGWTGLSCQRACDGGRWGPDCSHPCTCS 842
Query: 364 PQGFHCSADGWSCLRRPD-TKPSDDILCPNSQF--------HCPNSSTC------CTMLD 498
P C A C+ T P + CP F C + + C CT
Sbjct: 843 PGHGSCDAVSGLCVCEAGYTGPRCEQRCPQGHFGPGCGRQCQCEHGAACDHVSGACTCPA 902
Query: 499 GSWGC-----CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN-----------THPMA 630
G G CP V C G CD CL H
Sbjct: 903 GWRGALCERACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQGPRCDQACPAHTYG 962
Query: 631 KIPSQE-TIKTAVQCPDAESQCH-----NNSTCCKLSSGKYGCCPLPNATCCSDHIHCCP 792
SQ + C QCH STC + CP + H C
Sbjct: 963 HNCSQTCSCFNGASCDPVHGQCHCGPGWMGSTCLE-------ACPTGSYGQNCQHTCLCQ 1015
Query: 793 HGFVCDPVKKKCFSKEN------EAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSG 954
HG CDPV C E E + A +C C C +G
Sbjct: 1016 HGGTCDPVSGHCTCPEGWTGLACEEECLPGRFGAGCKHSCRCLNGGDCDRRSGRCLCPAG 1075
Query: 955 KWG------CCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPD 1116
G C V C +H C G C+ G C W
Sbjct: 1076 WTGDQCQSLCAEGTFGVRCEEHC-ACRRGATCHHVTGACLCPPGW--------------- 1119
Query: 1117 LLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYC-CPKGHTCVGKGH 1293
R C+N C P A C C CP+G T G
Sbjct: 1120 -----RGSRCENACPHGWFGEACAQR-----CQCPPGAACHHVTGECRCPRGFTGPG--- 1166
Query: 1294 CKRKKDMVTGLNKMPTRRASASQPGN-TTGCDQHTSCP-VGQTCCPSLSKGWACCQLPHA 1467
C++ A PG C Q CP Q C P+L C H
Sbjct: 1167 CEQ-----------------ACPPGTFGESCGQKCHCPGENQACHPALGT-CVCAAGYHG 1208
Query: 1468 VCCEDRQHCCPA--GYTCN-----VKARTCEKEEDSAL-PANQLARVGDLACGERRF 1614
C RQ C P G C + +C+ + L PA L L+C + F
Sbjct: 1209 SGC--RQRCPPGRFGPGCEQPCGCLNGGSCDAATGACLCPAGFLGADCSLSCPQGHF 1263
>ref|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis familiaris].
Length = 1548
Score = 61.2 bits (147), Expect = 3e-09
Identities = 83/352 (23%), Positives = 117/352 (33%), Gaps = 41/352 (11%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 523 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 571
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 471
N + C C GF GW C R + T +D C + + C N
Sbjct: 572 NPITGACH-------------CAAGFR----GWRCEDRCEQGTYGND---C-HQRCQCQN 610
Query: 472 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM---AKIPS 642
+T C + G C P + C D HG C+ C H + PS
Sbjct: 611 GAT-CDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE-QRCPCQNGGICHHVTGECSCPS 668
Query: 643 QETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH------ 777
Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 669 GWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVGTY 727
Query: 778 -IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TKLPAHSVQEVKCDTEVSCPDDYT- 933
+ C C +G C V C + A + +L + +KCD C D T
Sbjct: 728 GVRCAETCQCVNGGKCYHVSGSCLCEAGFAGEHCEARLCPEGLYGIKCDKRCPCHLDNTH 787
Query: 934 CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
C SG+ C P + CN+ + C G C+ G C
Sbjct: 788 SCHPMSGECACKPGWSGLYCNETCSPGFFGEACQQICSCHNGADCDSVTGKC 839
Score = 58.9 bits (141), Expect = 1e-08
Identities = 105/417 (25%), Positives = 136/417 (32%), Gaps = 74/417 (17%)
Frame = +1
Query: 121 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
QC +G LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 564 QCKNGALCNPITGACHCAAGFRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 616
Query: 292 TTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK--------------PS 429
T E C P C D CP G H G C +R + PS
Sbjct: 617 VTGEC-RCPPGYTGAFCED---LCPPGKH----GPQCEQRCPCQNGGICHHVTGECSCPS 668
Query: 430 DDI------LCPNSQF--------HCPNSSTCCTMLDGSWGCCPMPQASCCGDK------ 549
+ CP +F C N TC G C P C D+
Sbjct: 669 GWLGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAATGQCHCSPGYTGERCQDECPVGTY 727
Query: 550 -VHC-----CPHGTSCDLAHSRCLT---VTNTHPMAKIPSQET--IKTAVQCPDAESQCH 696
V C C +G C CL H A++ + IK +CP CH
Sbjct: 728 GVRCAETCQCVNGGKCYHVSGSCLCEAGFAGEHCEARLCPEGLYGIKCDKRCP-----CH 782
Query: 697 -NNSTCCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSK 837
+N+ C SG+ C P N TC I C +G CD V KC
Sbjct: 783 LDNTHSCHPMSGECACKPGWSGLYCNETCSPGFFGEACQQICSCHNGADCDSVTGKCICA 842
Query: 838 EN-EAIDFFTKLPAHSVQEVKCDTEVSCPDDYTC------CRLQSGKWGC-----CPF-V 978
+ ID P + + C + C +D C C ++G G CP
Sbjct: 843 PGFKGIDCSIPCPLETYG-INCSSLCGCKNDAVCSPVDGSCTCKAGWHGVDCSISCPSGT 901
Query: 979 QAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCD 1149
CN C G CN + GTC W K ++P L ER CD
Sbjct: 902 WGFSCNLTCQCLHGG-ACNTQDGTCTCAPGWRGDKCELPCQDGTYGLNCAER---CD 954
>ref|XP_535946.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 2 precursor (Megalin) (Glycoprotein 330) (gp330)
[Canis familiaris].
Length = 4646
Score = 58.5 bits (140), Expect = 2e-08
Identities = 104/464 (22%), Positives = 154/464 (33%), Gaps = 37/464 (7%)
Frame = +1
Query: 283 CILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFH 462
C T+ +C F V + CP G + +++ +C P +P + C + F
Sbjct: 972 CNRPTHPNGDCSHFCFPVPNFQRVCGCPYGMNLTSNHLTCQEDPSHEPPME-QCGSLSFP 1030
Query: 463 CPNSSTCCT--MLDGSWGCCPMPQASCCGDKVH-CCPHGTSCDLAHSRCLTVTNTHPMAK 633
C N + DG C CG + C P +C H C
Sbjct: 1031 CSNGRCVPSNYRCDGVDDCHDNSDEHLCGKMNNTCAPSAFTC--GHGEC----------- 1077
Query: 634 IPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDP 813
I +C D +S C + S S CP TC D+ C P ++CD
Sbjct: 1078 ------IPAHWKC-DKQSDCVDGSDEQNCPSQAPTSCPASFFTC--DNHLCIPRSWLCD- 1127
Query: 814 VKKKCFSKENEAIDFFTK--LPAH-SVQEVKC-DTEVSCPDDYTCCRLQSGKWGC---CP 972
C +E FT+ LP+ + +C D C D C S + GC C
Sbjct: 1128 TDNDCADGSDEKNCQFTETCLPSQFRCPDHRCIDLSFVCDGDKDCVD-GSDEAGCVINCT 1186
Query: 973 FVQAVC-----CNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERD 1137
Q C C ++ C + C+ + D T+ P + PD + D
Sbjct: 1187 ASQFKCASEDRCISSIYHCDGVFDCSDQSDEIDCSTR--------PPGMCHPDEFQCQAD 1238
Query: 1138 VPCDNXXXXXXXXXXXXXXXGEW-GCCP--APEAVCCSDHQYCCPKGHTCVGKGHCKR-- 1302
C E GC P P + D+ C + C G C+
Sbjct: 1239 GVCIPKSWECDGHQDCILGSDEHHGCAPRTCPPSHFLCDNGNCIYRDWLCDGDNDCRDMS 1298
Query: 1303 -KKDMVTGLNKMPTRRASASQPGNT------TGCDQHTSCPVG--------QTCCPSLSK 1437
+KD T P+ + PG + CD + CP G Q C +
Sbjct: 1299 DEKDCPTQAFHCPSWQWLC--PGYSICVNLSAVCDGISDCPNGTDESPLCNQDSCSDSNG 1356
Query: 1438 GWA--CCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSALP 1563
G C Q P C CP+GY ++TCE ++ +P
Sbjct: 1357 GCTHQCVQGPFGAQC-----LCPSGYLLANDSKTCEDIDECDVP 1395
Score = 50.8 bits (120), Expect = 4e-06
Identities = 74/284 (26%), Positives = 99/284 (34%), Gaps = 54/284 (19%)
Frame = +1
Query: 346 DGLHC-CPQGFHC--SADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM---LDGSW 507
+G C CP FH D CL R C ++QF C NS C + DG
Sbjct: 3483 NGFTCECPDDFHTLRMGDMNICLPR----------CSSTQFLCANSEKCIPIWWKCDGQR 3532
Query: 508 GC---------CPM----------PQASCCGDKVHC-----CPHGTSCD---LAHSRCLT 606
C CP +C C CP G+ D H RC
Sbjct: 3533 DCSDGSDEPVLCPQRYCRLGQFQCKDGNCTSSHFLCNAHQDCPDGSDEDQILCEHHRC-- 3590
Query: 607 VTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCP---LPNATCCSDH 777
+N A ++ I A +C D+E+ C +NS Y C P C+++
Sbjct: 3591 ESNEWQCA---NKRCIPEAWRC-DSENDCGDNS-----DEDVYNCASRICQPGYFKCANN 3641
Query: 778 IHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCD--TEVSCPDDYTC----- 936
HC P + CD V C +E P +CD TE SC +Y C
Sbjct: 3642 -HCIPQDWKCD-VDNDCGDYSDE--------PMPECMSHRCDNHTEFSCRTNYRCIPQWS 3691
Query: 937 -------CRLQSGKWGC----CPFVQAVCCNDHVHCCPTGYQCN 1035
CR S + GC C CN+H C P ++C+
Sbjct: 3692 VCNGFDDCRDNSDEQGCEERTCKPSGEFRCNNH-RCIPLRWRCD 3734
>ref|XP_538847.2| PREDICTED: similar to Neurogenic locus notch homolog protein 4
precursor (Notch 4) (hNotch4) [Canis familiaris].
Length = 1778
Score = 58.2 bits (139), Expect = 2e-08
Identities = 130/591 (21%), Positives = 176/591 (29%), Gaps = 114/591 (19%)
Frame = +1
Query: 115 GTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHS---C 285
G+ C D L CL P G C D+ A PC +A C G + C
Sbjct: 481 GSTCLD--LLATFHCLCPPGLEGQFCEVETDECASA-------PCLNQADCHDGLNSFLC 531
Query: 286 ILTTNETSNCC----------PFPEAVSCRD---GLHC-CPQGF---HCSADGWSCLRRP 414
+ T + C P C+D HC C GF HC A+ CL P
Sbjct: 532 VCLPGFTGSQCEEDINECASSPCANGGQCQDQPGSFHCECLPGFEGPHCQAEVDECLSGP 591
Query: 415 --------DTKPSDDILCPN------------SQFHCPNSSTC-----CTMLDGSWGCCP 519
D + LCP+ + C C C DGS GC P
Sbjct: 592 CPTGASCLDLPGAFSCLCPSGFTGHLCEVPLCAPSLCQPKQKCQDKAHCLCPDGSPGCAP 651
Query: 520 MPQASCCGDKVHC------CP---HGTSCDLAHSRCLTVTNTHPMAKIPSQETIK----- 657
+ + +C HC C G +C+ C++V H P
Sbjct: 652 I-EDNCTCHHGHCQRSSCVCDVGWTGPACEAELGGCISVPCAHGGTCHPQPSGYNCTCPP 710
Query: 658 --TAVQCPDAESQCHN----NSTCCKLSSGKYGCCPLPNAT---CCSDHIHC----CPHG 798
T C + + CH+ N C S Y C P+ T C + HC C +G
Sbjct: 711 GHTGPTCSEEVTACHSGPCLNGGSCSPSPRGYSCTCPPSHTGPRCQTSTDHCASAPCLNG 770
Query: 799 FVC--DPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC---PDDYTCCRLQSGKWG 963
C P C + S + C +C P C G
Sbjct: 771 GACVNRPGTSSCLCAAGFQGPHCEERTRPSCADNPCRNRATCQDGPQGPHCLCSPGYTGG 830
Query: 964 CCPFVQAVC----CNDHVHCCPTG--YQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLA 1125
C + +C C + +C TG +QC +G W +P S + L+
Sbjct: 831 TCQTLMDLCAQKPCPHNSYCLQTGPSFQCLCLQG-------WTGPLCNLPLSFCQKAALS 883
Query: 1126 MERDVP--CDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSD-----HQYCCPKGHTCVG 1284
C N C P + C D C G TC+
Sbjct: 884 QGTAASSLCQNGGLCIDSGSSYFCH-----CPPGFQGSTCQDRVNPCESRPCQHGATCIA 938
Query: 1285 K--GHCKRKKDMVTGLNKMPTRRASASQPGNTTGCDQHTSC---PVGQTC-CPSLSKGWA 1446
+ G+ + G N A SQP C H +C P G C CP G
Sbjct: 939 QPNGYLCQCAPGYNGQNCSKESNACQSQP-----CHNHGTCTPKPGGYYCTCPPGFVGLR 993
Query: 1447 C-----------CQLPHAVCCEDRQHC----CPAGYT---CNVKARTCEKE 1545
C C C + C GYT C V+ C+ +
Sbjct: 994 CEGDVDECLDRPCHPTGTAACHSLANAFYCQCLPGYTGQWCEVETDPCQSQ 1044
>ref|XP_538245.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 1 precursor (LRP) (Alpha-2-macroglobulin
receptor) (A2MR) (Apolipoprotein E receptor) (APOER)
(CD91) [Canis familiaris].
Length = 4526
Score = 57.0 bits (136), Expect = 5e-08
Identities = 101/451 (22%), Positives = 143/451 (31%), Gaps = 35/451 (7%)
Frame = +1
Query: 271 PGHSCILTTNETSNCCPFPEAVSCRDGLHC-CPQGFHCSADGWSCLRRPDTKPSDDILCP 447
P H C + SN C +S G C CP F+ +DG +C+ C
Sbjct: 3272 PNHPCKVNNGGCSNLC----LLSPGGGHKCACPTNFYLGSDGRTCVSN----------CT 3317
Query: 448 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM 627
SQF C N + W C D+ CP C +C T T+P
Sbjct: 3318 ASQFVCKNDK----CIPFWWKCDTEDDCGDHSDEPPDCPE-FKCRPGQFQCSTGICTNPA 3372
Query: 628 --------AKIPSQETIKTAVQCPDAESQCHNNSTCCK---LSSGKYGC--------CP- 747
+ S E C ++ +C N + C +G+ C CP
Sbjct: 3373 FICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPE 3432
Query: 748 ---LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC 918
PN CS C P +VCD ++N+ +D + PA+ Q E C
Sbjct: 3433 VTCAPNQFQCSITKRCIPRVWVCD--------RDNDCVDGSDE-PANCTQMTCGVDEFRC 3483
Query: 919 PDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPA 1098
D C +W C D C G + K CD E P++ +
Sbjct: 3484 KDSGRCI---PARWKC----------DGEDDCGDG--SDEPKEECD-ERTCEPYQFRCKN 3527
Query: 1099 SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTC 1278
+ P + D C + E C P P CS+ ++ C G
Sbjct: 3528 NRCVPGRWQCDYDNDCGD-------------NSDEESCTPRP----CSESEFSCANGRCI 3570
Query: 1279 VGKGHCKRKKDMVTGLN-KMPTRRASASQPGNTTG--------CDQHTSCPVG--QTCCP 1425
G+ C D G + K T R Q +G CD C G + C
Sbjct: 3571 AGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC- 3629
Query: 1426 SLSKGWACCQLPHAVCCEDRQHCCPAGYTCN 1518
G C L C + C P + C+
Sbjct: 3630 --GTGVRTCPLDEFQC--NNTLCKPLAWKCD 3656
>ref|XP_542124.2| PREDICTED: similar to Fibrillin-3 precursor [Canis familiaris].
Length = 2801
Score = 54.3 bits (129), Expect = 3e-07
Identities = 80/307 (26%), Positives = 100/307 (32%), Gaps = 43/307 (14%)
Frame = +1
Query: 256 KAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHC----SADGWSCLRRPDTK 423
K QCPPGH+ LT +T+ C + S D L CP G HC A SC +
Sbjct: 1089 KCQCPPGHA--LTAKDTA--CEDVDECSLSDSL--CPHG-HCVNVIGAFQCSCHAGFQST 1141
Query: 424 PSDDILCPNSQFHCPNS--STCCTMLDGSWGC------CPMPQASCCGDKVHCCPHGTSC 579
P ++ H N CT +GS+ C MP C D C + C
Sbjct: 1142 PDRQGCMDINECHSGNGGCDVHCTNTEGSYRCGCGHGYSLMPNGRACADVDECAENPDIC 1201
Query: 580 DLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-C 744
D +C V H + C D N C C+ + G + C C
Sbjct: 1202 D--GGQCANVPGGHHCLCYDGFMATPDSRTCIDVNECDLNPHICLHGDCENTKGSFVCHC 1259
Query: 745 P-----LPNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAH 879
AT CSD C G CD P C + D F L
Sbjct: 1260 QRGYVIRKGATGCSDVDECELGGHSCDSHASCLNVPGSFSCRCQPGWVGDGFACHDLDEC 1319
Query: 880 SVQEVKCDTEVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGY 1026
+ E C C P Y C CR + C C +C N P GY
Sbjct: 1320 AFWEHGCSLRADCLNVPGSYRCVCRQGFMGDGFSCEDRDECAEDVDLCENGQCLNAPGGY 1379
Query: 1027 QCNIEKG 1047
+C E G
Sbjct: 1380 RCECEMG 1386
>ref|XP_533343.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 1B precursor (Low-density lipoprotein
receptor-related protein-deleted in tumor) (LRP-DIT)
[Canis familiaris].
Length = 4492
Score = 50.8 bits (120), Expect = 4e-06
Identities = 99/462 (21%), Positives = 156/462 (33%), Gaps = 21/462 (4%)
Frame = +1
Query: 277 HSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQ 456
H C+L +T C CP F+ +AD +CL C SQ
Sbjct: 3179 HLCLLAPGKTHTCA--------------CPTNFYLAADNRTCLSN----------CTASQ 3214
Query: 457 FHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKI 636
F C + C W C + D+ CP C +C T P
Sbjct: 3215 FRC-KTDKCIPFW---WKCDTVDDCGDGSDEPDDCPE-FKCQPGRFQCGTGLCALP---- 3265
Query: 637 PSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPV 816
A C D E+ C +NS +L+ + C L C+ + C P C+
Sbjct: 3266 --------AFIC-DGENDCGDNSD--ELNCDTHVC--LSGQFKCTKNQKCIPVNLRCNG- 3311
Query: 817 KKKCFSKENE--------AIDFF-TKLPAHSVQEV-KCDTEVSCPD--DYTCCRLQSGKW 960
+ C +E+E + D+F K H + ++ CD + C D D C K
Sbjct: 3312 QDDCGDEEDERDCPENSCSPDYFQCKTTKHCISKLWVCDEDPDCADASDEANC----DKK 3367
Query: 961 GCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDV 1140
C P + C N+ +C P ++C+ + D + + P + + D L D
Sbjct: 3368 TCGPH-EFQCRNN--NCIPDHWRCDSQNDCSDNSDE----ENCKPQTCTLKDFLCANGD- 3419
Query: 1141 PCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVT 1320
C + E C EA C D Q+ C G K C +D
Sbjct: 3420 -CVSSRFWCDGDFDCADGSDERNC----EASCSKD-QFQCSNGQCISAKWKCDGHEDCKY 3473
Query: 1321 GLNKMPTRRASASQPGN-----TTGCDQHTSCPVGQTCCPSLSKGWAC---CQLPHAVCC 1476
G ++ AS + + + GC + G+ C S C C+ C
Sbjct: 3474 GEDEKHCEPASPTCSSSEYICASRGCISASLKCNGEYDCADGSDEMDCVTECK-EDQFRC 3532
Query: 1477 EDRQHCCPAGYTCN-VKARTCEKEEDSALPANQLARVGDLAC 1599
++ HC P + C+ + +ED+ + R + C
Sbjct: 3533 RNKAHCIPIRWLCDGIHDCVDGSDEDNCDRGGNICRADEFLC 3574
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,594,980
Number of extensions: 2101785
Number of successful extensions: 11394
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10994
Number of HSP's successfully gapped: 16
Length of query: 563
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 455
Effective length of database: 15,274,216
Effective search space: 6949768280
Effective search space used: 6949768280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002078.1| granulins precursor [Homo sapiens]. 828 0.0
Alignment gi|NP_941965.2| keratin-associated protein 10-11 [Homo sapiens]. 61 4e-09
Alignment gi|NP_941964.2| keratin-associated protein 10-1 [Homo sapiens]. 59 2e-08
Alignment gi|NP_115822.1| multiple epidermal growth factor-like domains p... 57 4e-08
Alignment gi|NP_002323.2| prolow-density lipoprotein receptor-related pro... 57 5e-08
Alignment gi|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens]. 55 2e-07
Alignment gi|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens]. 55 2e-07
Alignment gi|NP_061027.2| low-density lipoprotein receptor-related protei... 55 2e-07
Alignment gi|NP_004516.2| low-density lipoprotein receptor-related protei... 55 2e-07
Alignment gi|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens]. 52 1e-06
>ref|NP_002078.1| granulins precursor [Homo sapiens].
Length = 593
Score = 828 bits (2138), Expect = 0.0
Identities = 360/553 (65%), Positives = 408/553 (73%), Gaps = 12/553 (2%)
Frame = +1
Query: 67 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 246
MWTLVSWVAL GLVAGT+CPDGQ CPVACCLDPGGASYSCC P+ DKWP LS+HLG P
Sbjct: 1 MWTLVSWVALTAGLVAGTRCPDGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGP 60
Query: 247 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 426
C+ A C GHSCI T + TS+CCPFPEAV+C DG HCCP+GFHCSADG SC +R
Sbjct: 61 CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNS 120
Query: 427 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 606
I CP+SQF CP+ STCC M+DGSWGCCPMPQASCC D+VHCCPHG CDL H+RC+T
Sbjct: 121 VGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCIT 180
Query: 607 VTNTHPMAK-IPSQET-----IKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 768
T THP+AK +P+Q T + ++V CPDA S+C + STCC+L SGKYGCCP+PNATCC
Sbjct: 181 PTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCC 240
Query: 769 SDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQ 948
SDH+HCCP VCD ++ KC SKEN D TKLPAH+V +VKCD EVSCPD YTCCRLQ
Sbjct: 241 SDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQ 300
Query: 949 SGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAM 1128
SG WGCCPF QAVCC DH+HCCP G+ C+ +KGTC+ VPW EK PA LS PD A+
Sbjct: 301 SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQAL 360
Query: 1129 ERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKK 1308
+RDVPCDN GEWGCCP PEAVCCSDHQ+CCP+G+TCV +G C+R
Sbjct: 361 KRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGS 420
Query: 1309 DMVTGLNKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQ 1488
++V GL KMP RRAS S P GCDQHTSCPVGQTCCPSL WACCQLPHAVCCEDRQ
Sbjct: 421 EIVAGLEKMPARRASLSHP-RDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQ 479
Query: 1489 HCCPAGYTCNVKARTCEKEEDSALPANQLAR-----VGDLACGERRFCHKTIPAAETVLE 1653
HCCPAGYTCNVKAR+CEKE SA PA LAR V D+ CGE FCH +
Sbjct: 480 HCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQ 539
Query: 1654 -LGLLFLRQGICC 1689
RQG+CC
Sbjct: 540 GWACCPYRQGVCC 552
Score = 232 bits (591), Expect = 9e-61
Identities = 124/377 (32%), Positives = 168/377 (44%), Gaps = 54/377 (14%)
Frame = +1
Query: 112 AGTQCPDGQLC------PVACCLDPGGASYS----CC-----------------NPVPDK 210
A ++CPDG C CC P S CC N D
Sbjct: 211 ARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDL 270
Query: 211 WPKALSQHLG-VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSA 387
K + +G V C + CP G++C + CCPF +AV C D +HCCP GF C
Sbjct: 271 LTKLPAHTVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDT 330
Query: 388 DGWSCLRRPDTKP-----------------SDDILCPNSQFHCPNSSTCCTMLDGSWGCC 516
+C + P P D+ C N CP+S TCC + G WGCC
Sbjct: 331 QKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVS-SCPSSDTCCQLTSGEWGCC 389
Query: 517 PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN-THPMAKIPSQETIKTA---VQCPDAE 684
P+P+A CC D HCCP G +C +A +C + + K+P++ + + C D
Sbjct: 390 PIPEAVCCSDHQHCCPQGYTC-VAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQH 447
Query: 685 SQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAID--- 855
+ C TCC G + CC LP+A CC D HCCP G+ C+ + C E E +
Sbjct: 448 TSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSC---EKEVVSAQP 504
Query: 856 --FFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQ 1029
F + P V++V+C C D+ TCCR W CCP+ Q VCC D HCCP G++
Sbjct: 505 ATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFR 564
Query: 1030 CNIEKGTCDLETQWVPW 1080
C +GT L + W
Sbjct: 565 C-AARGTKCLRREAPRW 580
Score = 167 bits (423), Expect = 3e-41
Identities = 99/304 (32%), Positives = 126/304 (41%), Gaps = 53/304 (17%)
Frame = +1
Query: 124 CPDGQLC--------------PVACCLD-----PGGASYSC------CNPVPDK--WPKA 222
CPDG C CC D P G ++C C P + W +
Sbjct: 290 CPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAG--FTCDTQKGTCEQGPHQVPWMEK 347
Query: 223 LSQHLG----------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQG 372
HL VPC + CP +C T+ CCP PEAV C D HCCPQG
Sbjct: 348 APAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQG 407
Query: 373 FHCSADGWSC--------------LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG 510
+ C A+G C RR DI C + CP TCC L GSW
Sbjct: 408 YTCVAEG-QCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWA 465
Query: 511 CCPMPQASCCGDKVHCCPHGTSCDLAHSRC-LTVTNTHPMAKIPSQETIKTA-VQCPDAE 684
CC +P A CC D+ HCCP G +C++ C V + P + + V+C +
Sbjct: 466 CCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGH 525
Query: 685 SQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFT 864
CH+N TCC+ + + CCP CC+D HCCP GF C KC +E D
Sbjct: 526 F-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPL 584
Query: 865 KLPA 876
+ PA
Sbjct: 585 RDPA 588
>ref|NP_941965.2| keratin-associated protein 10-11 [Homo sapiens].
Length = 298
Score = 60.8 bits (146), Expect = 4e-09
Identities = 77/306 (25%), Positives = 104/306 (33%), Gaps = 9/306 (2%)
Frame = +1
Query: 142 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCP 321
CP +CC P A SCC P P C P SC+ +S CC
Sbjct: 22 CPESCCEPPCSAP-SCCAPAPS---------------LSLVCTPV-SCV-----SSPCCQ 59
Query: 322 FP-EAVSCRDGL--HCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM 492
E +C+ G C P SC ++ +P+ P Q C CC
Sbjct: 60 AACEPSACQSGCTSSCTP----------SCCQQSSCQPACCTSSPCQQACCV--PVCCKT 107
Query: 493 LDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQ 669
+ CC CCG CC +SC A C ++ P +P + +
Sbjct: 108 VCCKPVCCV---PVCCGAASSCCRQ-SSCQPA---CCASSSCQPACCVPVCCKPVCCVST 160
Query: 670 CPDAESQCHNNSTC----CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSK 837
C + S C S+C C SS + CC CC ++C P C PV + S
Sbjct: 161 CSEDSSSCCQQSSCQPACCTSSSYQQACCV---PVCCKT-VYCKP--ICCVPVCSRASS- 213
Query: 838 ENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSG-KWGCCPFVQAVCCNDHVHCC 1014
++ S Q C T +CCR S C P ++ CC CC
Sbjct: 214 --------SRCQQPSCQPACCTT--------SCCRPSSSVSLLCHPVCRSTCCVPVSSCC 257
Query: 1015 PTGYQC 1032
C
Sbjct: 258 APTSSC 263
>ref|NP_941964.2| keratin-associated protein 10-1 [Homo sapiens].
Length = 282
Score = 58.5 bits (140), Expect = 2e-08
Identities = 80/330 (24%), Positives = 108/330 (32%), Gaps = 15/330 (4%)
Frame = +1
Query: 88 VALVTGLVAGTQCPDG---QLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTK 258
+A T V + C D CP +CC +P + SCC P P C T
Sbjct: 1 MAASTMSVCSSACSDSWQVDACPESCC-EPHCCALSCCAPAP--------------CLTL 45
Query: 259 AQCPPGHSCILTTNETSNCCPFP-EAVSCRDGL--HCCPQGFHCSADGWSCLRRPDTKPS 429
C + +S CC E C+ G C P SC ++ +P+
Sbjct: 46 V-------CTPVSRVSSPCCQAACEPSPCQSGCTSSCTP----------SCCQQSSCQPA 88
Query: 430 DDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHG----TSCDLAHSR 597
C +S P CC + CC +P +C D CC T C + S+
Sbjct: 89 ---CCTSS----PCQQACCVPVCCKPVCC-LP--TCSKDSSSCCQQSSCQPTCCASSSSQ 138
Query: 598 --CLTVTNTHPMAKIPS-QETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCC-PLPNATC 765
C P+ +P+ E + Q +S CH CC S + CC P+
Sbjct: 139 QSCCVPVCCKPVCYVPTCSEDSSSCCQ----QSSCH--PACCTSSPCQQACCVPVRCKPV 192
Query: 766 CSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRL 945
C I C P VC C + S Q C T +CCR
Sbjct: 193 CCKPICCVP---VCSGASTSCCQQS-------------SCQPACCTT--------SCCRP 228
Query: 946 QSG-KWGCCPFVQAVCCNDHVHCCPTGYQC 1032
S C P + CC CC C
Sbjct: 229 SSSVSLLCRPVCRPACCMPVSSCCAPASSC 258
>ref|NP_115822.1| multiple epidermal growth factor-like domains protein 10 precursor
[Homo sapiens].
Length = 1140
Score = 57.4 bits (137), Expect = 4e-08
Identities = 82/352 (23%), Positives = 117/352 (33%), Gaps = 41/352 (11%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCTSRCQCKNGALC---- 160
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 471
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEDRCEQGTYGND---C-HQRCQCQN 199
Query: 472 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM---AKIPS 642
+T C + G C P + C D HG C+ C H + PS
Sbjct: 200 GAT-CDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE-QRCPCQNGGVCHHVTGECSCPS 257
Query: 643 QETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH------ 777
Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 258 GWMGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVGTY 316
Query: 778 -IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTEVSCPDDYT- 933
+ C C +G C V C + A + +L + +KCD C + T
Sbjct: 317 GVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTH 376
Query: 934 CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
C SG+ C P + CN+ + C G C+ G C
Sbjct: 377 SCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 55.5 bits (132), Expect = 2e-07
Identities = 105/415 (25%), Positives = 129/415 (31%), Gaps = 72/415 (17%)
Frame = +1
Query: 121 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
QC +G LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 153 QCKNGALCNPITGACHCAAGFRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 205
Query: 292 TTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK--------------PS 429
T E C P C D CP G H G C +R + PS
Sbjct: 206 VTGEC-RCPPGYTGAFCED---LCPPGKH----GPQCEQRCPCQNGGVCHHVTGECSCPS 257
Query: 430 DDI------LCPNSQF--------HCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPH 567
+ CP +F C N TC G C P C D+ CP
Sbjct: 258 GWMGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAATGQCHCSPGYTGERCQDE---CPV 313
Query: 568 GTSCDLAHSRCLTVTNT---HPMAKIPSQETIK----TAVQCP--------DAESQCH-N 699
GT L C V H + A CP D CH
Sbjct: 314 GTYGVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLE 373
Query: 700 NSTCCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSKEN 843
N+ C SG+ C P N TC I C +G CD V KC
Sbjct: 374 NTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTCAPG 433
Query: 844 -EAIDFFTKLPAHSVQEVKCDTEVSCPDDYTC------CRLQSGKWGC-----CPF-VQA 984
+ ID T P + C + C +D C C ++G G CP
Sbjct: 434 FKGIDCSTPCPL-GTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWG 492
Query: 985 VCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCD 1149
CN C G CN GTC W K ++P L ER CD
Sbjct: 493 FGCNLTCQCL-NGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAER---CD 543
>ref|NP_002323.2| prolow-density lipoprotein receptor-related protein 1 precursor [Homo
sapiens].
Length = 4544
Score = 57.0 bits (136), Expect = 5e-08
Identities = 101/451 (22%), Positives = 143/451 (31%), Gaps = 35/451 (7%)
Frame = +1
Query: 271 PGHSCILTTNETSNCCPFPEAVSCRDGLHC-CPQGFHCSADGWSCLRRPDTKPSDDILCP 447
P H C + SN C +S G C CP F+ +DG +C+ C
Sbjct: 3290 PNHPCKVNNGGCSNLC----LLSPGGGHKCACPTNFYLGSDGRTCVSN----------CT 3335
Query: 448 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM 627
SQF C N + W C D+ CP C +C T T+P
Sbjct: 3336 ASQFVCKNDK----CIPFWWKCDTEDDCGDHSDEPPDCPE-FKCRPGQFQCSTGICTNPA 3390
Query: 628 --------AKIPSQETIKTAVQCPDAESQCHNNSTCCK---LSSGKYGC--------CP- 747
+ S E C ++ +C N + C +G+ C CP
Sbjct: 3391 FICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPE 3450
Query: 748 ---LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC 918
PN CS C P +VCD ++N+ +D + PA+ Q E C
Sbjct: 3451 VTCAPNQFQCSITKRCIPRVWVCD--------RDNDCVDGSDE-PANCTQMTCGVDEFRC 3501
Query: 919 PDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPA 1098
D C +W C D C G + K CD E P++ +
Sbjct: 3502 KDSGRCI---PARWKC----------DGEDDCGDG--SDEPKEECD-ERTCEPYQFRCKN 3545
Query: 1099 SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTC 1278
+ P + D C + E C P P CS+ ++ C G
Sbjct: 3546 NRCVPGRWQCDYDNDCGD-------------NSDEESCTPRP----CSESEFSCANGRCI 3588
Query: 1279 VGKGHCKRKKDMVTGLN-KMPTRRASASQPGNTTG--------CDQHTSCPVG--QTCCP 1425
G+ C D G + K T R Q +G CD C G + C
Sbjct: 3589 AGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC- 3647
Query: 1426 SLSKGWACCQLPHAVCCEDRQHCCPAGYTCN 1518
G C L C + C P + C+
Sbjct: 3648 --GTGVRTCPLDEFQC--NNTLCKPLAWKCD 3674
>ref|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens].
Length = 370
Score = 55.5 bits (132), Expect = 2e-07
Identities = 66/257 (25%), Positives = 93/257 (36%), Gaps = 25/257 (9%)
Frame = +1
Query: 358 CCPQGFHCSADGW-------SCLRRPDTKPSD--DILCPNSQFHCPNSSTCCTMLDGSWG 510
C P +D W SC P P+ ++C + SS CC +
Sbjct: 20 CLPGSCDSCSDSWQVDDCPESCCEPPCCAPAPCLSLVCTPVSYV---SSPCCRVT----- 71
Query: 511 CCPMP-QASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAES 687
C P P Q+ C C +SC LA C A P Q+ V C
Sbjct: 72 CEPSPCQSGCTSSCTPSCCQQSSCQLA---CC--------ASSPCQQACCVPVCCKTVCC 120
Query: 688 Q-------CHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDPVKKKCFSKEN 843
+ C +S+CC+ SS + CC P C I C P VC + C +++
Sbjct: 121 KPVYCVPVCSGDSSCCQQSSCQSACCTSSPCQQACCVPICCKP---VCSGISSSC-CQQS 176
Query: 844 EAIDFFTKLPAHSVQEVK-CDTEVSCPDDYTCCRLQSGKWGCC---PFVQAVC---CNDH 1002
+ + +V E C + +CC+ S K CC P QA C C
Sbjct: 177 SCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCKPACCTSSPCQQACCVPVCCKP 236
Query: 1003 VHCCPTGYQCNIEKGTC 1053
V C PT C+ + G+C
Sbjct: 237 VCCVPT---CSDDSGSC 250
>ref|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens].
Length = 365
Score = 55.1 bits (131), Expect = 2e-07
Identities = 88/373 (23%), Positives = 126/373 (33%), Gaps = 21/373 (5%)
Frame = +1
Query: 484 CTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTA 663
C SW P+ SCC + CC A + CL++ T P++++ S T
Sbjct: 25 CDSCSDSWQVDDCPE-SCC--EPPCC--------APAPCLSLVCT-PVSRVSSPCCPVTC 72
Query: 664 VQCPDAESQCHNNST--CCKLSSGKYGCC---PLPNATCCSDHIHCCPHGFVCDPVKKKC 828
P +S C ++ T CC+ SS + CC P A C + C C PV
Sbjct: 73 EPSP-CQSGCTSSCTPSCCQQSSCQLACCASSPCQQACC----VPVCCKTVCCKPV---- 123
Query: 829 FSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCC---PFVQAVCCND 999
C V C D +CC+ S + CC P QA C
Sbjct: 124 -----------------------CCVSVCCGDS-SCCQQSSCQSACCTSSPCQQACCVP- 158
Query: 1000 HVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXX 1179
V C P C+ +C ++ V + +S P A+ PC +
Sbjct: 159 -VCCKPV---CSGISSSCCQQSSCV-------SCVSSPCCQAVCEPSPCQSGCTSSCTPS 207
Query: 1180 XXXXXXGEWGCC---PAPEA----VCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGLNKMP 1338
+ CC P +A VCC CC + C++ P
Sbjct: 208 CCQQSSCQPTCCTSSPCQQACCVPVCCVP--VCCVPTCSEDSSSCCQQSSCQPACCTSSP 265
Query: 1339 TRRASASQ--PGNTTGCDQHTSCP----VGQTCCPSLSKGWACCQLPHAVCCEDRQHCCP 1500
+ A G +T C Q +SC C PS S C H VC + CC
Sbjct: 266 CQHACCVPVCSGASTSCCQQSSCQPACCTASCCRPSSSVSLLC----HPVC---KSTCCV 318
Query: 1501 AGYTCNVKARTCE 1539
+C A +C+
Sbjct: 319 PVPSCGASASSCQ 331
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/260 (25%), Positives = 99/260 (38%), Gaps = 20/260 (7%)
Frame = +1
Query: 358 CCPQGFHCSADGW-------SCLRRPDTKPSD--DILC-PNSQFHCPNSSTCCTMLDGSW 507
C P +D W SC P P+ ++C P S+ SS CC +
Sbjct: 20 CLPGSCDSCSDSWQVDDCPESCCEPPCCAPAPCLSLVCTPVSRV----SSPCCPVT---- 71
Query: 508 GCCPMP-QASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQCPDA 681
C P P Q+ C C +SC LA C + +P +T+ C
Sbjct: 72 -CEPSPCQSGCTSSCTPSCCQQSSCQLA---CCASSPCQQACCVPVCCKTVCCKPVC--C 125
Query: 682 ESQCHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDF 858
S C +S+CC+ SS + CC P C + C P VC + C +++ +
Sbjct: 126 VSVCCGDSSCCQQSSCQSACCTSSPCQQACCVPVCCKP---VCSGISSSC-CQQSSCVSC 181
Query: 859 FTKLPAHSVQEVK-CDTEVSCPDDYTCCRLQSGKWGCC---PFVQAVC---CNDHVHCCP 1017
+ +V E C + + +CC+ S + CC P QA C C V C P
Sbjct: 182 VSSPCCQAVCEPSPCQSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP 241
Query: 1018 TGYQCNIEKGTCDLETQWVP 1077
T C+ + +C ++ P
Sbjct: 242 T---CSEDSSSCCQQSSCQP 258
Score = 52.0 bits (123), Expect = 2e-06
Identities = 75/298 (25%), Positives = 104/298 (34%), Gaps = 14/298 (4%)
Frame = +1
Query: 142 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCP 321
CP +CC P A C + V + S V C+ + C G T++ T +CC
Sbjct: 37 CPESCCEPPCCAPAPCLSLVCTPVSRVSSPCCPVTCE-PSPCQSG----CTSSCTPSCC- 90
Query: 322 FPEAVSCRDGLHCC---PQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM 492
+ SC+ L CC P C C + KP + C + C S+CC
Sbjct: 91 --QQSSCQ--LACCASSPCQQACCVP--VCCKTVCCKP---VCCVSV---CCGDSSCCQQ 138
Query: 493 LDGSWGCC---PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTA 663
CC P QA C V C P C S C ++ P + +
Sbjct: 139 SSCQSACCTSSPCQQACCV--PVCCKP---VCSGISSSCCQQSSCVSCVSSPCCQAVCEP 193
Query: 664 VQCPDAESQCHNNST--CCKLSSGKYGCC---PLPNATC---CSDHIHCCPHGFVCDPVK 819
C +S C ++ T CC+ SS + CC P A C C + C P C
Sbjct: 194 SPC---QSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP---TCSEDS 247
Query: 820 KKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCC 993
C + + T P C V +CC+ S + CC A CC
Sbjct: 248 SSCCQQSSCQPACCTSSPCQHA----CCVPVCSGASTSCCQQSSCQPACC---TASCC 298
Score = 49.7 bits (117), Expect = 8e-06
Identities = 64/257 (24%), Positives = 85/257 (33%), Gaps = 27/257 (10%)
Frame = +1
Query: 124 CPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE 303
C C ACC+ P CC PV C C C ++ +
Sbjct: 99 CCASSPCQQACCV-PVCCKTVCCKPV---------------CCVSVCCGDSSCCQQSSCQ 142
Query: 304 TSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD-----TKPSDDILCPNS--QFH 462
++ C P +C + C P CS SC ++ + P +C S Q
Sbjct: 143 SACCTSSPCQQACCVPVCCKPV---CSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSG 199
Query: 463 CPNSST--CCTMLDGSWGCC---PMPQASC---CGDKVHCCPHGTSCDLAHSRCLTVTNT 618
C +S T CC CC P QA C C V C P +C S C ++
Sbjct: 200 CTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP---TCSEDSSSCCQQSSC 256
Query: 619 HPMA--KIPSQETIKTAVQCPDAESQCHNNSTC---------CKLSSG-KYGCCPLPNAT 762
P P Q V C A + C S+C C+ SS C P+ +T
Sbjct: 257 QPACCTSSPCQHACCVPV-CSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKST 315
Query: 763 CCSDHIHCCPHGFVCDP 813
CC C C P
Sbjct: 316 CCVPVPSCGASASSCQP 332
>ref|NP_061027.2| low-density lipoprotein receptor-related protein 1B precursor [Homo
sapiens].
Length = 4599
Score = 55.1 bits (131), Expect = 2e-07
Identities = 78/325 (24%), Positives = 112/325 (34%), Gaps = 60/325 (18%)
Frame = +1
Query: 265 CPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDIL- 441
C + C +E++ C A +C+ C G C W C R D D +
Sbjct: 905 CDGANDCGSNEDESNQTCT---ARTCQVDQFSCGNG-RCIPRAWLCDREDDCGDQTDEMA 960
Query: 442 -------------------CPNSQFHCPNSSTCCTMLDGS--WGC---CPMPQASCCGDK 549
C +S++HC + C DGS GC C Q C +
Sbjct: 961 SCEFPTCEPLTQFVCKSGRCISSKWHCDSDDDCG---DGSDEVGCVHSCFDNQFRCSSGR 1017
Query: 550 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQCPDAESQCHNNSTC----- 711
C P +CD + C ++ A+I ++E I + C E QCH + C
Sbjct: 1018 --CIPGHWACD-GDNDCGDFSDE---AQINCTKEEIHSPAGCNGNEFQCHPDGNCVPDLW 1071
Query: 712 -------CKLSSGKYGC------CPLPNATCCSDHIHCCPHGFVCD-PVKKKCFSKENEA 849
C+ S + GC C C C +VCD + + S E++
Sbjct: 1072 RCDGEKDCEDGSDEKGCNGTIRLCDHKTKFSCWSTGRCINKAWVCDGDIDCEDQSDEDDC 1131
Query: 850 IDFFTKLPAHSVQ---------EVKCDTEVSCPDD----YTC--CRLQSGKWGCCPFVQA 984
F P H E C+ + CPD Y C C L +G GC
Sbjct: 1132 DSFLCGPPKHPCANDTSVCLQPEKLCNGKKDCPDGSDEGYLCDECSLNNG--GCSNHCSV 1189
Query: 985 VCCNDHVHCCPTGYQCNIEKGTCDL 1059
V V CP G Q N + TC++
Sbjct: 1190 VPGRGIVCSCPEGLQLNKDNKTCEI 1214
>ref|NP_004516.2| low-density lipoprotein receptor-related protein 2 precursor [Homo
sapiens].
Length = 4655
Score = 55.1 bits (131), Expect = 2e-07
Identities = 86/396 (21%), Positives = 126/396 (31%), Gaps = 45/396 (11%)
Frame = +1
Query: 568 GTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCP 747
G CD AH RC + C A+ +C C + + GC
Sbjct: 25 GQECDSAHFRC-------------------GSGHCIPADWRCDGTKDCSD-DADEIGCAV 64
Query: 748 LPNATC------CSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTE 909
+ TC C C P+ +VCD + C +E D S ++ C
Sbjct: 65 V---TCQQGYFKCQSEGQCIPNSWVCDQ-DQDCDDGSDERQD--CSQSTCSSHQITCSNG 118
Query: 910 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEK 1089
P +Y C ++ CP ND + PT Q + G C +Q WK
Sbjct: 119 QCIPSEYRCDHVRD-----CP--DGADENDCQY--PTCEQLTCDNGACYNTSQKCDWKVD 169
Query: 1090 IPASLSRPDL--LAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVC----CSDHQ 1251
S + + + + C N + G + E C C +Q
Sbjct: 170 CRDSSDEINCTEICLHNEFSCGNGECIPRAYVCDHDNDCQDG---SDEHACNYPTCGGYQ 226
Query: 1252 YCCPKGH------TCVGKGHCKRKKDM------VTGLNKMPTRRASASQPGNTTG----C 1383
+ CP G C G+ CK D ++K R S + G C
Sbjct: 227 FTCPSGRCIYQNWVCDGEDDCKDNGDEDGCESGPHDVHKCSPREWSCPESGRCISIYKVC 286
Query: 1384 DQHTSCP-------------VGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVK 1524
D CP T C +L+ + C + P+ C CP GY N
Sbjct: 287 DGILDCPGREDENNTSTGKYCSMTLCSALNCQYQCHETPYGGAC-----FCPPGYIINHN 341
Query: 1525 -ARTCEKEEDSALPANQLARVGDLACGE---RRFCH 1620
+RTC + +D Q+ + D C R CH
Sbjct: 342 DSRTCVEFDDC-----QIWGICDQKCESRPGRHLCH 372
Score = 54.7 bits (130), Expect = 3e-07
Identities = 77/327 (23%), Positives = 106/327 (32%), Gaps = 30/327 (9%)
Frame = +1
Query: 262 QCPPGHSCILTTNETS---NCCPFPEAVSC--RDGLHCCPQGFHCSADG------WSCLR 408
+C G CI TN +C + C R C F C DG W C
Sbjct: 1193 KCASGDKCIGVTNRCDGVFDCSDNSDEAGCPTRPPGMCHSDEFQCQEDGICIPNFWECDG 1252
Query: 409 RPDTKPSDDI-------LCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVH--CC 561
PD D CP+S FHC N + + +W C + + CGD C
Sbjct: 1253 HPDCLYGSDEHNACVPKTCPSSYFHCDNGNC----IHRAWLC---DRDNDCGDMSDEKDC 1305
Query: 562 PHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLS---SGK 732
P T P +CP + QC ++ C LS G
Sbjct: 1306 P-----------------TQPF-------------RCPSWQWQCLGHNICVNLSVVCDGI 1335
Query: 733 YGC------CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEV 894
+ C PL N CSD C H V +P KC + F + + +++
Sbjct: 1336 FDCPNGTDESPLCNGNSCSDFNGGCTHECVQEPFGAKCLC----PLGFLLANDSKTCEDI 1391
Query: 895 -KCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQW 1071
+CD SC C G + C C TGY + TC
Sbjct: 1392 DECDILGSCSQH---CYNMRGSFRC--------------SCDTGYMLESDGRTC------ 1428
Query: 1072 VPWKEKIPASLSRPDLLAMERDVPCDN 1152
K+ AS S L+A + + D+
Sbjct: 1429 -----KVTASESLLLLVASQNKIIADS 1450
>ref|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens].
Length = 401
Score = 52.4 bits (124), Expect = 1e-06
Identities = 104/469 (22%), Positives = 147/469 (31%), Gaps = 11/469 (2%)
Frame = +1
Query: 142 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCP 321
CP +CC +P + SCC P PC + C + +S CCP
Sbjct: 32 CPESCC-EPPCCAPSCCAP--------------APCLSLV-------CTPVSRVSSPCCP 69
Query: 322 FP-EAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLD 498
E C+ G C++ SC + S + C S P CC +
Sbjct: 70 VTCEPSPCQSG---------CTS---SCTPSCCQQSSCQLACCASS---PCQQACCVPVC 114
Query: 499 GSWGCCP--MPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQC 672
CC CCGD CC +SC S C T + P Q+ + C
Sbjct: 115 CKTVCCKPVCCVPVCCGDS-SCCQQ-SSC---QSACCTSS--------PCQQACCVPICC 161
Query: 673 PDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCD--PVKKKCFSKENE 846
S +S+CC+ SS C ++ CC VC+ P + C S
Sbjct: 162 KPVCSGI--SSSCCQQSS----CVSCVSSPCCQ---------AVCEPSPCQSGCISSCTP 206
Query: 847 AIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGY 1026
+ C + SC CC S + CC VCC V C P
Sbjct: 207 S----------------CCQQSSCQP--ACCTSSSCQQACC---VPVCCKT-VCCKPV-- 242
Query: 1027 QCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEW 1206
C+ + +C ++ P S P A V C G
Sbjct: 243 -CSEDSSSCCQQSSCQP-----ACCTSSPCQQACCVPVCC---------KPVCCKPVGSV 287
Query: 1207 GCCPAPEAVCC---SDHQYCCPKGHT---CVGKGHCKRKKDMVTGLNKMPTRRASASQPG 1368
C ++CC S CC + C CK ++ +P ++S
Sbjct: 288 PICSGASSLCCQQSSCQPACCTSSQSQQGCCVPVCCK-------PVSCVPVCSGASSSCC 340
Query: 1369 NTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTC 1515
+ C +C C PS S C + CC CC +C
Sbjct: 341 QQSSC--QPACCTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCAPTSSC 387
Score = 52.0 bits (123), Expect = 2e-06
Identities = 64/260 (24%), Positives = 86/260 (33%), Gaps = 28/260 (10%)
Frame = +1
Query: 118 TQCPDGQLCPVACCLDP--GGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPG----- 276
T P Q C V C P G S SCC + + PC +A C P
Sbjct: 147 TSSPCQQACCVPICCKPVCSGISSSCCQQ------SSCVSCVSSPC-CQAVCEPSPCQSG 199
Query: 277 --HSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFH-------CSADGWSCLRRPDTKPS 429
SC + + S+C P S C P CS D SC ++ +P+
Sbjct: 200 CISSCTPSCCQQSSCQPACCTSSSCQQACCVPVCCKTVCCKPVCSEDSSSCCQQSSCQPA 259
Query: 430 DDILCPNSQFHCPNSSTCCTMLDGSWGCC-PMPQASCCGDKVHCCPHGTSCDLAHSRCLT 606
C +S P CC + CC P+ C C +SC A C T
Sbjct: 260 ---CCTSS----PCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQSSCQPA---CCT 309
Query: 607 VTNTHPMAKIP-SQETIKTAVQCPDAESQCHNNSTC---------CKLSSG-KYGCCPLP 753
+ + +P + + C A S C S+C C+ SS C P+
Sbjct: 310 SSQSQQGCCVPVCCKPVSCVPVCSGASSSCCQQSSCQPACCTTSCCRPSSSVSLLCRPVC 369
Query: 754 NATCCSDHIHCCPHGFVCDP 813
CC CC C P
Sbjct: 370 RPACCVPVPSCCAPTSSCQP 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,506,495
Number of extensions: 2089220
Number of successful extensions: 11596
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 11054
Number of HSP's successfully gapped: 24
Length of query: 563
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 455
Effective length of database: 14,737,052
Effective search space: 6705358660
Effective search space used: 6705358660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032201.2| granulins [Mus musculus]. 765 0.0
Alignment gi|NP_001156449.1| multiple epidermal growth factor-like domain... 67 4e-11
Alignment gi|NP_001001979.1| multiple epidermal growth factor-like domain... 60 4e-09
Alignment gi|NP_001074557.1| low-density lipoprotein receptor-related pro... 57 4e-08
Alignment gi|NP_032538.2| prolow-density lipoprotein receptor-related pro... 57 6e-08
Alignment gi|NP_001078996.1| keratin-associated protein 9-1 [Mus musculus]. 55 2e-07
Alignment gi|NP_079689.2| RIKEN cDNA 1110058A15 [Mus musculus]. 53 6e-07
Alignment gi|NP_001127871.1| multiple epidermal growth factor-like domain... 52 1e-06
Alignment gi|NP_032600.2| sperm mitochondrial-associated cysteine-rich pr... 51 3e-06
Alignment gi|NP_001004157.2| scavenger receptor class F member 1 [Mus mus... 51 3e-06
>ref|NP_032201.2| granulins [Mus musculus].
Length = 602
Score = 765 bits (1976), Expect = 0.0
Identities = 325/533 (60%), Positives = 392/533 (73%), Gaps = 9/533 (1%)
Frame = +1
Query: 49 PRRRWTMWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALS 228
PRRR TMW L+SW+A GLVAGTQCPDGQ CPVACCLD GGA+YSCCNP+ D WP+ S
Sbjct: 8 PRRRQTMWVLMSWLAFAAGLVAGTQCPDGQFCPVACCLDQGGANYSCCNPLLDTWPRITS 67
Query: 229 QHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLR 408
HL C+T CP G+SC+LT + TS+CCPF + VSC DG HCCPQGFHCSADG SC +
Sbjct: 68 HHLDGSCQTHGHCPAGYSCLLTVSGTSSCCPFSKGVSCGDGYHCCPQGFHCSADGKSCFQ 127
Query: 409 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 588
D P + CP SQF CP+S+TCC M+DGSWGCCPMPQASCC D+VHCCPHG SCDL
Sbjct: 128 MSDN-PLGAVQCPGSQFECPDSATCCIMVDGSWGCCPMPQASCCEDRVHCCPHGASCDLV 186
Query: 589 HSRCLTVTNTHPMAK-IPSQETIKT-----AVQCPDAESQCHNNSTCCKLSSGKYGCCPL 750
H+RC++ T TH + K P+Q+T + +V CPDA++QC ++STCC+L +GKYGCCP+
Sbjct: 187 HTRCVSPTGTHTLLKKFPAQKTNRAVSLPFSVVCPDAKTQCPDDSTCCELPTGKYGCCPM 246
Query: 751 PNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDY 930
PNA CCSDH+HCCP VCD ++ KC SK N D TKLP + V+EVKCD EVSCP+ Y
Sbjct: 247 PNAICCSDHLHCCPQDTVCDLIQSKCLSK-NYTTDLLTKLPGYPVKEVKCDMEVSCPEGY 305
Query: 931 TCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSR 1110
TCCRL +G WGCCPF +AVCC DH+HCCP G+QC+ EKGTC++ VPW +K+ A L
Sbjct: 306 TCCRLNTGAWGCCPFAKAVCCEDHIHCCPAGFQCHTEKGTCEMGILQVPWMKKVIAPLRL 365
Query: 1111 PDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKG 1290
PD ++ D PCD+ G+WGCCP PEAVCCSD+Q+CCP+G TC+ +G
Sbjct: 366 PDPQILKSDTPCDDFTRCPTNNTCCKLNSGDWGCCPIPEAVCCSDNQHCCPQGFTCLAQG 425
Query: 1291 HCKRKKDMVTGLNKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAV 1470
+C++ MV GL K+P R+ + Q G+ GCDQHTSCPVGQTCCPSL WACCQLPHAV
Sbjct: 426 YCQKGDTMVAGLEKIPARQTTPLQIGD-IGCDQHTSCPVGQTCCPSLKGSWACCQLPHAV 484
Query: 1471 CCEDRQHCCPAGYTCNVKARTCEKEEDSALPANQLA---RVGDLACGERRFCH 1620
CCEDRQHCCPAGYTCNVKARTCEK+ D P L +VG++ CGE FCH
Sbjct: 485 CCEDRQHCCPAGYTCNVKARTCEKDVDFIQPPVLLTLGPKVGNVECGEGHFCH 537
Score = 227 bits (579), Expect = 2e-59
Identities = 132/394 (33%), Positives = 176/394 (44%), Gaps = 60/394 (15%)
Frame = +1
Query: 112 AGTQCPDGQLCPVACCLDPGGASYSCCNPVPDK-------------------WPKALSQH 234
A TQCPD CC P G Y CC P+P+ K LS++
Sbjct: 223 AKTQCPDDS----TCCELPTG-KYGCC-PMPNAICCSDHLHCCPQDTVCDLIQSKCLSKN 276
Query: 235 LG--------------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQG 372
V C + CP G++C CCPF +AV C D +HCCP G
Sbjct: 277 YTTDLLTKLPGYPVKEVKCDMEVSCPEGYTCCRLNTGAWGCCPFAKAVCCEDHIHCCPAG 336
Query: 373 FHCSADGWSC----------------LRRPDTK------PSDDILCPNSQFHCPNSSTCC 486
F C + +C LR PD + P DD CP ++TCC
Sbjct: 337 FQCHTEKGTCEMGILQVPWMKKVIAPLRLPDPQILKSDTPCDDFT------RCPTNNTCC 390
Query: 487 TMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTV-TNTHPMAKIPSQETIKTA 663
+ G WGCCP+P+A CC D HCCP G +C LA C T + KIP+++T
Sbjct: 391 KLNSGDWGCCPIPEAVCCSDNQHCCPQGFTC-LAQGYCQKGDTMVAGLEKIPARQTTPLQ 449
Query: 664 VQ---CPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 834
+ C D + C TCC G + CC LP+A CC D HCCP G+ C+ VK +
Sbjct: 450 IGDIGC-DQHTSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTCN-VKARTCE 507
Query: 835 KENEAIDFFTKLP-AHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHC 1011
K+ + I L V V+C C D+ TCC+ +G W CCP+++ VCC D HC
Sbjct: 508 KDVDFIQPPVLLTLGPKVGNVECGEGHFCHDNQTCCKDSAGVWACCPYLKGVCCRDGRHC 567
Query: 1012 CPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRP 1113
CP G+ C+ +GT L + W + + RP
Sbjct: 568 CPGGFHCS-ARGTKCLRKKIPRWDMFLRDPVPRP 600
>ref|NP_001156449.1| multiple epidermal growth factor-like domains protein 6 precursor
[Mus musculus].
Length = 1572
Score = 67.0 bits (162), Expect = 4e-11
Identities = 115/518 (22%), Positives = 162/518 (31%), Gaps = 85/518 (16%)
Frame = +1
Query: 238 GVPCKTKAQCPPGHSCILTTNET-SNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRP 414
G C+ + C PG +C + E + C P + C G +CS SC+ P
Sbjct: 694 GPGCRNRCTCRPGVACDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSGS-CSCVGAP 752
Query: 415 DTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC-----CPMPQ--ASCCGDKVHC----- 558
+ + + LCP + + C +G WG CP + ASC + C
Sbjct: 753 CHRVTGECLCPPGKTGEDCGADCP---EGRWGLGCQEICPACEHGASCDPETGTCLCLPG 809
Query: 559 ---------CP---HGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNN 702
CP GT C + C + HP S T + C A H
Sbjct: 810 FVGSRCQDACPAGWFGTGCQM-RCACANDGHCHPATGRCSCAPGWTGLSCQRACDSGHWG 868
Query: 703 STC---CKLSSGKYGCCPLPNATCCS---DHIHC------------------CPHGFVCD 810
C C S+G C + C + C C HG CD
Sbjct: 869 PDCIHPCNCSAGHGNCDAVSGLCLCEAGYEGPQCEQWCRQGYFGPGCEQKCRCEHGATCD 928
Query: 811 PVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTC------CRLQSGKWG--- 963
V C F + C + +C C C +G+WG
Sbjct: 929 HVSGACTCPAGWRGSFCEHACPAGFFGLDCGSACNCSAGAPCDAVTGSCICPAGRWGPHC 988
Query: 964 ---CCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWV--PWKEKIPASLSRPDLLAM 1128
C P + C+ + C G C+ G C W+ + PA L +
Sbjct: 989 AQTCPPLTFGLNCSQ-ICTCFNGASCDPVLGQCHCAPGWMGPTCLQACPAGLYGKNC--- 1044
Query: 1129 ERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYC-CPKGHTCVGKGHCKRK 1305
+ C N G G A E C H C +C+ G C
Sbjct: 1045 QHSCLCRNGGNCDPILGQCTCPEGWTGL--ACENECLPGHHGAGCRLNCSCLNGGTC--- 1099
Query: 1306 KDMVTGLNKMPTR-RASASQPGNTTG-----CDQHTSCPVGQTC--------CPSLSKGW 1443
D +TG + PT Q +G C++H +C G TC CP GW
Sbjct: 1100 -DRLTGHCRCPTGWTGDKCQSPCVSGMFGVHCEEHCACRKGATCHHVTGACLCP---PGW 1155
Query: 1444 -------ACCQLPHAVCCEDRQHCCPAGYTCNVKARTC 1536
AC + C R H CP G +C+ + C
Sbjct: 1156 RGSHCEQACPRGWFGEACAQRCH-CPPGASCHHVSGEC 1192
Score = 60.1 bits (144), Expect = 5e-09
Identities = 115/504 (22%), Positives = 151/504 (29%), Gaps = 73/504 (14%)
Frame = +1
Query: 133 GQLCPVACCLDPGGASYSCCNPV------PDKWP------KALSQHLGVPCKTKAQCPPG 276
G+ C +C GG C+P+ P+ W + L H G C+ C G
Sbjct: 1041 GKNCQHSCLCRNGGN----CDPILGQCTCPEGWTGLACENECLPGHHGAGCRLNCSCLNG 1096
Query: 277 HSCILTTNE-------TSNCCPFPEAVSCRDGLHC-----CPQGFHCSADGWSCLRRPDT 420
+C T T + C P VS G+HC C +G C +CL P
Sbjct: 1097 GTCDRLTGHCRCPTGWTGDKCQSP-CVSGMFGVHCEEHCACRKGATCHHVTGACLCPPGW 1155
Query: 421 KPSD-DILCPNSQF--------HCPNSSTC------CTMLDGSWG------CCPMPQASC 537
+ S + CP F HCP ++C C G G C P
Sbjct: 1156 RGSHCEQACPRGWFGEACAQRCHCPPGASCHHVSGECHCPPGFTGPGCEQACQPGTFGKD 1215
Query: 538 CGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAES--QCHNNSTC 711
C C +C A C+ H Q+ + P E +C N TC
Sbjct: 1216 CEHPCQCPGETWACHPASGACVCAAGYHGT---DCQQRCPSGRYGPGCEQICKCLNGGTC 1272
Query: 712 ------CKLSSGKYGC-----CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDF 858
C +G G CP H+ C G CDPV C
Sbjct: 1273 DPATGACYCPAGFLGADCSLACPQGRFGPSCAHVCTCGQGAACDPVSGTCICPPG----- 1327
Query: 859 FTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNI 1038
K H E CP D + GK GC +H C G C+
Sbjct: 1328 --KTGGH--------CERGCPQD------RFGK-GC----------EHKCACRNGGLCHA 1360
Query: 1039 EKGTCDLETQWV--PWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWG- 1209
G+C W+ + PA L + C N G +G
Sbjct: 1361 TNGSCSCPLGWMGPHCEHACPAGRYGAACLL---ECSCQNNGSCEPTSGACLCGPGFYGQ 1417
Query: 1210 ----CCPAP------EAVC-CSDHQYCCPKGHTCVGKGHCKRKKDMVTGLNKMPTRRASA 1356
CPA + VC C C P C+ G + R
Sbjct: 1418 ACEDTCPAGFHGSGCQRVCECQQGAPCDPVSGRCL----------CPAGFHGQFCER--G 1465
Query: 1357 SQPG-NTTGCDQHTSCPVGQTCCP 1425
+PG GC Q +CP G C P
Sbjct: 1466 CKPGFFGDGCLQQCNCPTGVPCDP 1489
Score = 57.8 bits (138), Expect = 3e-08
Identities = 123/533 (23%), Positives = 164/533 (30%), Gaps = 71/533 (13%)
Frame = +1
Query: 124 CPDGQLC--PVACCLDPGGASYSCCNPV--PDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
C +G C + C P G + CN PD + G C + C G +C
Sbjct: 529 CRNGGTCFPGLDGCDCPEGWTGIICNETCPPDTF--------GKNCSSPCICQNGGTC-- 578
Query: 292 TTNETSNCCPFPEAVSCRDGLHC---CPQGF---------HCSADG------WSCLRRPD 417
+ S C P VS G HC CP+GF HC+ G +CL P
Sbjct: 579 --DPVSGACRCPPGVS---GAHCEDGCPKGFYGKHCRKKCHCANRGRCHRLYGACLCDPG 633
Query: 418 TKP----------------SDDILCPNSQFH-CPNSSTCCTMLDGSWG------CCPMPQ 528
S+D LC S C + C+ G G C P
Sbjct: 634 LYGRFCHLACPPWAFGPGCSEDCLCEQSHTRSCNSKDGSCSCKAGFQGERCEAECEPGSF 693
Query: 529 ASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQET------IKTAVQCPDAESQ 690
C ++ C P G +CD C T + QE + + C +
Sbjct: 694 GPGCRNRCTCRP-GVACDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSGSCSCVGAP 752
Query: 691 CHNNSTCCKLSSGKYG--C---CPLPN-ATCCSDHIHCCPHGFVCDPVKKKCFSKENEAI 852
CH + C GK G C CP C + C HG CDP C
Sbjct: 753 CHRVTGECLCPPGKTGEDCGADCPEGRWGLGCQEICPACEHGASCDPETGTCLC------ 806
Query: 853 DFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQC 1032
LP V + +CP +G +G ++ C ND HC P +C
Sbjct: 807 -----LPGF----VGSRCQDACP---------AGWFGTGCQMRCACANDG-HCHPATGRC 847
Query: 1033 NIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGC 1212
+ G L Q CD+ G WG
Sbjct: 848 SCAPGWTGLSCQRA-----------------------CDS---------------GHWG- 868
Query: 1213 CPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGL------NKMPTRRASASQPGNT 1374
P+ + H C GH G+C D V+GL + P Q
Sbjct: 869 ---PDCI----HPCNCSAGH-----GNC----DAVSGLCLCEAGYEGPQCEQWCRQGYFG 912
Query: 1375 TGCDQHTSCPVGQTC--------CPSLSKGWACCQLPHAVCCEDRQHCCPAGY 1509
GC+Q C G TC CP+ +G C +H CPAG+
Sbjct: 913 PGCEQKCRCEHGATCDHVSGACTCPAGWRGSFC------------EHACPAGF 953
>ref|NP_001001979.1| multiple epidermal growth factor-like domains protein 10 precursor
[Mus musculus].
Length = 1147
Score = 60.5 bits (145), Expect = 4e-09
Identities = 82/354 (23%), Positives = 118/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG +C + H G C ++ QC C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNRALC---- 160
Query: 298 NETSNCCPFPEAVSCRDGLHCCPQGFHCSAD--GWSCLRRPD--TKPSDDILCPNSQFHC 465
N + C HC+A GW C R + T +D C + + C
Sbjct: 161 NPITGAC-------------------HCAAGYRGWRCEDRCEQGTYGND---C-HQRCQC 197
Query: 466 PNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMA---KI 636
N +TC + G C P + C D HG C+ C H +
Sbjct: 198 QNGATC-DHITGECRCSPGYTGAFCEDLCPPGKHGPHCE-QRCPCQNGGVCHHVTGECSC 255
Query: 637 PSQETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 777
PS Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PSGWMGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVG 314
Query: 778 ---IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TKLPAHSVQEVKCDTEVSCPDDY 930
+ C C +G C V C + + + +L + +KCD C D
Sbjct: 315 SYGVRCAEACRCVNGGKCYHVSGTCLCEAGFSGELCEARLCPEGLYGIKCDKRCPCHLDN 374
Query: 931 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIEKGTC 1053
T C SG+ GC P + CN+ + C G C+ G C
Sbjct: 375 THSCHPMSGECGCKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGRC 428
Score = 54.3 bits (129), Expect = 3e-07
Identities = 99/419 (23%), Positives = 130/419 (31%), Gaps = 76/419 (18%)
Frame = +1
Query: 121 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 291
QC + LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 153 QCKNRALCNPITGACHCAAGYRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 205
Query: 292 TTNETSNCCPFPEAVSCRD-------GLHC--------------------CPQGFHCSAD 390
T E C P C D G HC CP G+ +
Sbjct: 206 ITGEC-RCSPGYTGAFCEDLCPPGKHGPHCEQRCPCQNGGVCHHVTGECSCPSGWMGTVC 264
Query: 391 GWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHG 570
G C P+ + + + + C N TC G C P C D+ +G
Sbjct: 265 GQPC---PEGRFGKNC---SQECQCHNGGTC-DAATGQCHCSPGYTGERCQDECPVGSYG 317
Query: 571 TSCDLA-----HSRCLTVTNTHPMAKIPSQETIKTAVQCP--------DAESQCH-NNST 708
C A +C V+ T S E + + CP D CH +N+
Sbjct: 318 VRCAEACRCVNGGKCYHVSGTCLCEAGFSGELCEARL-CPEGLYGIKCDKRCPCHLDNTH 376
Query: 709 CCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSKEN-EA 849
C SG+ GC P N TC I C +G CD V +C +
Sbjct: 377 SCHPMSGECGCKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGRCACAPGFKG 436
Query: 850 IDFFTKLPAHSVQEVKCDTEVSCPDDYTCC-------------------RLQSGKWGCCP 972
D T P + C + C +D C R SG WG
Sbjct: 437 TDCSTPCPLGRYG-INCSSRCGCKNDAVCSPVDGSCICKAGWHGVDCSIRCPSGTWG--- 492
Query: 973 FVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCD 1149
F + C C G CN GTC W K + P L ER CD
Sbjct: 493 FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGAKCEFPCQDGTYGLNCAER---CD 543
>ref|NP_001074557.1| low-density lipoprotein receptor-related protein 2 precursor [Mus
musculus].
Length = 4660
Score = 57.0 bits (136), Expect = 4e-08
Identities = 101/466 (21%), Positives = 139/466 (29%), Gaps = 39/466 (8%)
Frame = +1
Query: 283 CILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFH 462
C TT+ +C F V + CP G D +C P +P C +S F
Sbjct: 973 CSQTTHPNGDCSHFCFPVPNFQRVCGCPYGMKLQRDQMTCEGDPAREPPTQ-QCGSSSFP 1031
Query: 463 CPNSSTCCTML--DGSWGCCPMPQASCCG-------DKVHCCPHGTSCDLAHSRCLTVTN 615
C N ++ DG C CG C HG C RC +
Sbjct: 1032 CNNGKCVPSIFRCDGVDDCHDNSDEHQCGALNNTCSSSAFTCVHGGQCIPGQWRCDKQND 1091
Query: 616 THPMAKIPSQETIKTAVQCPDAESQCHNNSTC-----------CKLSSGKYGCCPLPNAT 762
+ + T + CP C N+ C S + C + T
Sbjct: 1092 CLDGSDEQNCPTRSPSSTCPPTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNC--QASGT 1149
Query: 763 C------CSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPD 924
C C DH C +VCD K C +EA + + KC SC +
Sbjct: 1150 CHPTQFRCPDH-RCISPLYVCDG-DKDCVDGSDEAGCVLNCTSS----QFKCADGSSCIN 1203
Query: 925 D-YTC-----CRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKE 1086
Y C C+ S + GC +C D C G C CD + +
Sbjct: 1204 SRYRCDGVYDCKDNSDEAGCPTRPPGMCHPDEFQCQGDG-TCIPNTWECDGHPDCIQGSD 1262
Query: 1087 K----IPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQY 1254
+ +P + S L CDN G+ C + C +
Sbjct: 1263 EHNGCVPKTCSPSHFL-------CDNGNCIYNSWVCD----GDNDCRDMSDEKDCPTQPF 1311
Query: 1255 CCPKGH-TCVGKGHCKRKKDMVTGLNKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSL 1431
CP C G C + G+ P G D+ C Q C
Sbjct: 1312 HCPSSQWQCPGYSICVNLSALCDGVFDCPN------------GTDESPLC--NQDSCLHF 1357
Query: 1432 SKGWA--CCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSALP 1563
+ G C Q P C CP GY +TCE + +P
Sbjct: 1358 NGGCTHRCIQGPFGATC-----VCPIGYQLANDTKTCEDVNECDIP 1398
Score = 50.8 bits (120), Expect = 3e-06
Identities = 95/408 (23%), Positives = 127/408 (31%), Gaps = 52/408 (12%)
Frame = +1
Query: 244 PCKTK-AQCPPGHSCILTTNETSNCCPFPE---AVSCRDGLHCCPQGFHCSADGWSCLRR 411
PC T C H C++ C P+ V RD C P
Sbjct: 3470 PCATNNGGC--SHLCLIKAGGRGFTCECPDDFQTVQLRDRTLCMP--------------- 3512
Query: 412 PDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAH 591
+C ++QF C N+ C + W C S D+ CPH C L
Sbjct: 3513 ---------MCSSTQFLCGNNEKCIPIW---WKCDGQKDCSDGSDESDLCPH-RFCRLGQ 3559
Query: 592 SRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQ---------CHNNSTCC--KLSSGKYG 738
+C T P A +++ C D + C N C K +Y
Sbjct: 3560 FQCRDGNCTSPQALCNARQ------DCADGSDEDRVLCEHHRCEANEWQCANKRCIPEYW 3613
Query: 739 CCP-----LPNATCCSDHIHCC-----PHGFVCD-----PVKKKCFSKENEAIDFFTKLP 873
C L N+ D HC P F C+ P KC +N+ D+ + P
Sbjct: 3614 QCDSVDDCLDNSD--EDPSHCASRTCRPGQFKCNNGRCIPQSWKC-DVDNDCGDYSDE-P 3669
Query: 874 AHSVQEV--KCD--TEVSCPDDYTC------------CRLQSGKWGC----CPFVQAVCC 993
H CD TE SC +Y C CR S + GC C C
Sbjct: 3670 IHECMTAAYNCDNHTEFSCKTNYRCIPQWAVCNGFDDCRDNSDEQGCESVPCHPSGDFRC 3729
Query: 994 NDHVHCCPTGYQCN--IEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXX 1167
+H HC P ++C+ + G E VP +E + D + CD
Sbjct: 3730 GNH-HCIPLRWKCDGIDDCGDNSDEESCVP-RECTESEFRCADQQCIPSRWVCDQENDCG 3787
Query: 1168 XXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKD 1311
E C C S H C PK C G+ C D
Sbjct: 3788 DNSDERDC---EMKTCHPEHFQCTSGH--CVPKALACDGRADCLDASD 3830
>ref|NP_032538.2| prolow-density lipoprotein receptor-related protein 1 [Mus musculus].
Length = 4545
Score = 56.6 bits (135), Expect = 6e-08
Identities = 101/451 (22%), Positives = 142/451 (31%), Gaps = 35/451 (7%)
Frame = +1
Query: 271 PGHSCILTTNETSNCCPFPEAVSCRDGLHC-CPQGFHCSADGWSCLRRPDTKPSDDILCP 447
P H C + SN C +S G C CP F+ DG +C+ C
Sbjct: 3291 PNHPCKVNNGGCSNLC----LLSPGGGHKCACPTNFYLGGDGRTCVSN----------CT 3336
Query: 448 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM 627
SQF C N + W C D+ CP C +C T T+P
Sbjct: 3337 ASQFVCKNDK----CIPFWWKCDTEDDCGDHSDEPPDCPE-FKCRPGQFQCSTGICTNPA 3391
Query: 628 --------AKIPSQETIKTAVQCPDAESQCHNNSTCCK---LSSGKYGC--------CP- 747
+ S E C ++ +C N + C +G+ C CP
Sbjct: 3392 FICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPE 3451
Query: 748 ---LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC 918
PN CS C P +VCD ++N+ +D + PA+ Q E C
Sbjct: 3452 VTCAPNQFQCSITKRCIPRVWVCD--------RDNDCVDGSDE-PANCTQMTCGVDEFRC 3502
Query: 919 PDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPA 1098
D C +W C D C G + K CD E P++ +
Sbjct: 3503 KDSGRCI---PARWKC----------DGEDDCGDG--SDEPKEECD-ERTCEPYQFRCKN 3546
Query: 1099 SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTC 1278
+ P + D C + E C P P CS+ ++ C G
Sbjct: 3547 NRCVPGRWQCDYDNDCGD-------------NSDEESCTPRP----CSESEFSCANGRCI 3589
Query: 1279 VGKGHCKRKKDMVTGLN-KMPTRRASASQPGNTTG--------CDQHTSCPVG--QTCCP 1425
G+ C D G + K T R Q +G CD C G + C
Sbjct: 3590 AGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC- 3648
Query: 1426 SLSKGWACCQLPHAVCCEDRQHCCPAGYTCN 1518
G C L C + C P + C+
Sbjct: 3649 --GTGVRTCPLDEFQC--NNTLCKPLAWKCD 3675
>ref|NP_001078996.1| keratin-associated protein 9-1 [Mus musculus].
Length = 358
Score = 54.7 bits (130), Expect = 2e-07
Identities = 65/238 (27%), Positives = 85/238 (35%), Gaps = 6/238 (2%)
Frame = +1
Query: 118 TQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
T C C CC AS CC+P P P C+T PP C+ +
Sbjct: 153 TSCCQPSCCETTCCKPACVAS--CCSP-PCCQPSCCETTC---CRTTCYKPP---CVTSC 203
Query: 298 NETSNC---CPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCP 468
+SNC C P ++ CC SC R KP+ I C Q C
Sbjct: 204 CHSSNCETTCYKPTCITSCCQPSCCET---------SCCRTTCCKPTCVISC--CQPSCC 252
Query: 469 NSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQE 648
++ C T C P SCC + CC T+C C+T + P + E
Sbjct: 253 ETTCCRTTC-----CKPTCVISCC--QPSCCE--TTC--CKPVCVTSCYSPPCCQPSCCE 301
Query: 649 TIKTAVQC--PDAESQCHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDP 813
T C P + C S CC+ + + CC P +CCS CC C P
Sbjct: 302 TTCCRTTCCKPTCVTSCCQPS-CCETTCCRSTCCKPACVTSCCSP--PCCCESSSCKP 356
>ref|NP_079689.2| RIKEN cDNA 1110058A15 [Mus musculus].
Length = 139
Score = 53.1 bits (126), Expect = 6e-07
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 2/147 (1%)
Frame = +1
Query: 334 VSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC 513
+SC+ C C + P P CP CP S+CC++ GS GC
Sbjct: 1 MSCQQSQQQCQAPAKCPPK----CQTPKCPPKCPPKCPPK---CPPVSSCCSL--GSGGC 51
Query: 514 CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQC 693
C CC C G C L+H R H + + S C
Sbjct: 52 CGSSSGGCCSSGGCCSSGGGGCCLSHHRPRRSLRRHRHS---------SGCCSSGGSSGC 102
Query: 694 HNNSTCCKLSSGKYGCCPLPNAT--CC 768
+S CC S G GCC + CC
Sbjct: 103 CGSSGCCGSSGGSSGCCGSSGGSSGCC 129
>ref|NP_001127871.1| multiple epidermal growth factor-like domains protein 11 isoform 1
[Mus musculus].
Length = 1095
Score = 52.0 bits (123), Expect = 1e-06
Identities = 117/558 (20%), Positives = 167/558 (29%), Gaps = 70/558 (12%)
Frame = +1
Query: 121 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 297
+C G+ + P C +PG C + S+H G C + QC G C T
Sbjct: 105 ECMHGRCVSPDTCHCEPGWGGPDCSSGCD-------SEHWGPHCSNRCQCQNGALCNPIT 157
Query: 298 NETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPD-TKPSDDI 438
C P C + G C C G C CL P T +
Sbjct: 158 G-ACVCAPGFRGWRCEELCAPGTHGKGCQLLCQCHHGASCDPRTGECLCAPGYTGVYCEE 216
Query: 439 LCP------NSQFHCP-NSSTCCTMLDGSWGCCPMPQASCCGDKV-------HC-----C 561
LCP + + CP + C + G C P + C +C C
Sbjct: 217 LCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPC 276
Query: 562 PHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGC 741
HG CD +C T + + + T CHN C ++G C
Sbjct: 277 HHGGQCDHVTGQC-HCTAGYMGDRCQEECPFGTFGFLCSQRCDCHNGGQCSP-ATGACEC 334
Query: 742 CPLPNATCCSDHIHCCPHG-----------------FVCDPVKKKCFSKENEAIDFFTKL 870
P C + + CP G C PV C + + + +
Sbjct: 335 EPGYKGPSCQERL--CPEGLHGPGCTLPCPCDTENTISCHPVTGACTCQPGWSGHYCNES 392
Query: 871 PAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCP-FVQAVC------------CNDHVHC 1011
C +C + C + +G C P F+ VC C+ V
Sbjct: 393 CPAGYYGNGCQLPCTCQNGADCHSI-TGSCTCAPGFMGEVCAVPCAAGTYGPNCSS-VCS 450
Query: 1012 CPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXX 1191
C G C+ G+C W +P L E + C N
Sbjct: 451 CSNGGTCSPVDGSCTCREGWQGLDCSLPCPSGTWGLNCNETCI-CANGAACSPFDGSCAC 509
Query: 1192 XXGEWG--C-CPAPE---AVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGLNKMPTRRAS 1353
G G C P P+ + CS+H C GHC TG+ R S
Sbjct: 510 TPGWLGDSCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGW-TGI-----RCDS 563
Query: 1354 ASQPGN-TTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKAR 1530
PG C SC G +C P +C Q CP G+ + A+
Sbjct: 564 TCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLC----QRICPPGFYGHGCAQ 619
Query: 1531 TCEKEEDSALPANQLARV 1584
C S P + ++ +
Sbjct: 620 PCPLCVHSRGPCHHISGI 637
>ref|NP_032600.2| sperm mitochondrial-associated cysteine-rich protein [Mus
musculus].
Length = 197
Score = 50.8 bits (120), Expect = 3e-06
Identities = 44/153 (28%), Positives = 52/153 (33%)
Frame = +1
Query: 244 PCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK 423
P KT QCPP CCP C CCPQ C C +
Sbjct: 58 PSKTN-QCPPP------------CCP---PKPCCPPKPCCPQKPPCCPKSPCCPPKSPCC 101
Query: 424 PSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCL 603
P CP CP +TC L CCP + SCC K CCP C A C
Sbjct: 102 PPKPCPCP-PPCPCPCPATCPCPLKPP--CCPQ-KCSCCPKKCTCCPQPPPC-CAQPTCC 156
Query: 604 TVTNTHPMAKIPSQETIKTAVQCPDAESQCHNN 702
+ N S +T++ Q P + N
Sbjct: 157 SSENKTESDSDTSGQTLEKGSQSPQSPPGAQGN 189
>ref|NP_001004157.2| scavenger receptor class F member 1 [Mus musculus].
Length = 820
Score = 50.8 bits (120), Expect = 3e-06
Identities = 67/264 (25%), Positives = 86/264 (32%), Gaps = 39/264 (14%)
Frame = +1
Query: 124 CPDGQLC--PVACCLDPGGASYSCCNPVPDK-WPKALSQHLGVPCKTKAQCPPGHS-CIL 291
C ++C P C PG C + P + W + PC + QC P C
Sbjct: 66 CRKEEVCVKPGLCRCKPGFFGAQCSSRCPGQYWGHDCRETC--PCHPRGQCEPATGDCQC 123
Query: 292 TTNETSNCCPFPEAVSCRDGLH--CCPQGFHCSAD-GW---SCLRRPDTKPSD------- 432
N C FP C G H C P+ C D GW +C R P+
Sbjct: 124 QPNYWGRLCEFP----CTCGPHGQCDPKTGLCHCDPGWWSPTCRRPCQCNPASRCDQATG 179
Query: 433 DILCPNSQF--HCPNSSTC-----------CTMLDGSWG--C---CPMPQASCCGDKVHC 558
+CP + C S C C L G WG C C + C HC
Sbjct: 180 TCVCPPGWWGRRCSFSCNCHTSPCMQDSGRCVCLPGWWGPECSRKCQCVRGQCSVTSGHC 239
Query: 559 -CP---HGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSS 726
CP HG C+L + P QC ++ C N+TC ++
Sbjct: 240 SCPPGFHGIRCELPCN--------------PGHY----GAQCKESCGHCELNATCSPVTG 281
Query: 727 GKYGCCPLPNATCCSDHIHCCPHG 798
C P N T C CP G
Sbjct: 282 NCESCKPGWNGTQCKQP---CPAG 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,841,456
Number of extensions: 1771309
Number of successful extensions: 9904
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8998
Number of HSP's successfully gapped: 21
Length of query: 563
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 456
Effective length of database: 12,403,707
Effective search space: 5656090392
Effective search space used: 5656090392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038043.1| granulins [Sus scrofa]. 1153 0.0
Alignment gi|XP_003356178.1| PREDICTED: multiple epidermal growth factor-... 63 6e-10
Alignment gi|XP_003354310.1| PREDICTED: multiple epidermal growth factor-... 60 4e-09
Alignment gi|XP_003126347.2| PREDICTED: prolow-density lipoprotein recept... 58 1e-08
Alignment gi|XP_003358240.1| PREDICTED: scavenger receptor class F member... 55 9e-08
Alignment gi|XP_003354093.1| PREDICTED: fibrillin-3-like [Sus scrofa]. 52 1e-06
Alignment gi|XP_003123232.2| PREDICTED: fibrillin-3 [Sus scrofa]. 52 1e-06
Alignment gi|XP_003128799.2| PREDICTED: protein jagged-2 [Sus scrofa]. 51 2e-06
Alignment gi|XP_003359017.1| PREDICTED: keratin-associated protein 10-8-l... 49 6e-06
Alignment gi|XP_003134230.2| PREDICTED: prolow-density lipoprotein recept... 49 8e-06
>ref|NP_001038043.1| granulins [Sus scrofa].
Length = 583
Score = 1153 bits (2983), Expect = 0.0
Identities = 505/542 (93%), Positives = 508/542 (93%), Gaps = 1/542 (0%)
Frame = +1
Query: 67 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 246
MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP
Sbjct: 1 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 60
Query: 247 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 426
CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP
Sbjct: 61 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 120
Query: 427 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 606
SDDILCPNSQFHCPNSSTCCTMLDGSWGCCP+PQASCCGDKVHCCPHGTSCDLAHSRCLT
Sbjct: 121 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPLPQASCCGDKVHCCPHGTSCDLAHSRCLT 180
Query: 607 VTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 786
VTNTHPMAKIPSQETIKTA+QCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC
Sbjct: 181 VTNTHPMAKIPSQETIKTAIQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 240
Query: 787 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGC 966
CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGC
Sbjct: 241 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGC 300
Query: 967 CPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPC 1146
CPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPC
Sbjct: 301 CPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPC 360
Query: 1147 DNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGL 1326
DN GEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGL
Sbjct: 361 DNVSSCPSSSTCCPVTPGEWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGL 420
Query: 1327 NKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAG 1506
NKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAG
Sbjct: 421 NKMPTRRASASQPGNTTGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAG 480
Query: 1507 YTCNVKARTCEKEEDSALPANQLARVGDLACGERRFCHKTIPAAETVL-ELGLLFLRQGI 1683
YTCNVKARTCEKEEDSALPA LARVGD+ACGERRFCH L RQGI
Sbjct: 481 YTCNVKARTCEKEEDSALPATHLARVGDVACGERRFCHNNYTCCRDSLGGWACCPYRQGI 540
Query: 1684 CC 1689
CC
Sbjct: 541 CC 542
Score = 222 bits (566), Expect = 4e-58
Identities = 111/306 (36%), Positives = 151/306 (49%), Gaps = 26/306 (8%)
Frame = +1
Query: 241 VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSC------ 402
V C T+ CP ++C + CCPF +AV C D +HCCP G+ C+ + +C
Sbjct: 276 VKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQW 335
Query: 403 ----------LRRPDTKPSD-DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDK 549
L RPD + D+ C N CP+SSTCC + G WGCCP P+A CC D
Sbjct: 336 VPWKEKIPASLSRPDLLAMERDVPCDNVS-SCPSSSTCCPVTPGEWGCCPAPEAVCCSDH 394
Query: 550 VHCCPHGTSCDLAHSRC------LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC 711
+CCP G +C + C +T N P + + + T C D + C TC
Sbjct: 395 QYCCPKGHTC-VGKGHCKRKKDMVTGLNKMPTRRASASQPGNTT-GC-DQHTSCPVGQTC 451
Query: 712 CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHS--- 882
C S + CC LP+A CC D HCCP G+ C+ + C +E+ A LPA
Sbjct: 452 CPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSA------LPATHLAR 505
Query: 883 VQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLE 1062
V +V C C ++YTCCR G W CCP+ Q +CC D HCCP G++C +GT L
Sbjct: 506 VGDVACGERRFCHNNYTCCRDSLGGWACCPYRQGICCADGRHCCPAGFRCG-ARGTKCLH 564
Query: 1063 TQWVPW 1080
+ + W
Sbjct: 565 KEALRW 570
>ref|XP_003356178.1| PREDICTED: multiple epidermal growth factor-like domains protein
6-like [Sus scrofa].
Length = 1982
Score = 62.8 bits (151), Expect = 6e-10
Identities = 134/583 (22%), Positives = 173/583 (29%), Gaps = 74/583 (12%)
Frame = +1
Query: 100 TGLVAGTQCPDG-------QLCPV------------ACCLDPGGASYSCCNPVPDKWPKA 222
TG G +CP+G ++CP AC PG C + P
Sbjct: 1251 TGDDCGAECPEGRWGLGCQEICPACEHGATCEPETGACLCRPGFTGSRCQDGCPQG---- 1306
Query: 223 LSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGF--------- 375
H G C + QC G +C + S C P CP GF
Sbjct: 1307 ---HYGPGCGQQCQCEHGAAC----DHVSGACTCPAGWRGTFCERACPAGFFGVDCHHAC 1359
Query: 376 HCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVH 555
+CSA G SC S LCP + P S C C +V
Sbjct: 1360 NCSA-GASC-----DAVSGSCLCPPGR-QGPRCSQTCPAHTYGHNC----------SQVC 1402
Query: 556 CCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC------CK 717
C +G SCD H +C A + + C + C N TC C
Sbjct: 1403 SCSNGASCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHS-CLCQNGGTCDPVSGHCS 1461
Query: 718 LSSGKYG------CCP-LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPA 876
G G C P L A+C H C +G +CDP C D A
Sbjct: 1462 CPEGWAGLACEKECLPGLFGASC--QHSCRCLNGGLCDPRTGHCLCLAGWTGDECQSPCA 1519
Query: 877 HSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHV-----------HC-CPT 1020
V+CD +C + R Q G C P +A C HC CP
Sbjct: 1520 EGTFGVRCDEPCACRWEAAATR-QRGLL-CPPGWRARMCPTACPPGWFGEGCAQHCQCPP 1577
Query: 1021 GYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXG 1200
G C+ G C P + P E+ P G
Sbjct: 1578 GAACHHVSGEC-----------HCPPGFTGP---GCEQACP-----------------PG 1606
Query: 1201 EWGCCPAPEAVCCSDHQYCCPKGHTCVGKGHCKRKKDMVTGLNKMPTRRASASQPGN-TT 1377
+G + C ++Q C P CV G + R+ PG
Sbjct: 1607 TFGESCGQKCQCPGENQACHPASGACV----------CAAGYHGSGCRQ--RCPPGRFGP 1654
Query: 1378 GCDQHTSCPVGQTC--------CPSLSKGWAC-CQLPHA--------VC-CEDRQHCCPA 1503
GC+Q +C G +C CP+ G C PH VC C C P
Sbjct: 1655 GCEQLCACLNGGSCDPATGACRCPAGFLGTDCGLACPHGRFGLGCAHVCRCGQGAACDPV 1714
Query: 1504 GYTCNVKARTCEKEEDSALPANQLA--RVGDLACGERRFCHKT 1626
TC + P N+ G +C CH T
Sbjct: 1715 TGTCTCPPGRTGVHCEHGCPQNRFGVNCEGTCSCRNGGLCHAT 1757
Score = 60.8 bits (146), Expect = 2e-09
Identities = 107/487 (21%), Positives = 148/487 (30%), Gaps = 43/487 (8%)
Frame = +1
Query: 238 GVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQG---FHCSADGWSCLR 408
G C CPPG +C + E CP +D CP G +CS SC
Sbjct: 1178 GPGCLQTCTCPPGVACDPISGECGKECP--AGYRGKDCGQECPAGTFGLNCSGS-CSCRG 1234
Query: 409 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 588
P + LCP + + C +G WG C + C HG +C+
Sbjct: 1235 APCDPVTGQCLCPPGRTGDDCGAECP---EGRWGLG-------CQEICPACEHGATCEPE 1284
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTC------CKLSS 726
CL P + CP + QC + + C C +
Sbjct: 1285 TGACLCR---------PGFTGSRCQDGCPQGHYGPGCGQQCQCEHGAACDHVSGACTCPA 1335
Query: 727 GKYG-----CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKL-PAHSV- 885
G G CP H C G CD V C ++ PAH+
Sbjct: 1336 GWRGTFCERACPAGFFGVDCHHACNCSAGASCDAVSGSCLCPPGRQGPRCSQTCPAHTYG 1395
Query: 886 ----QEVKCDTEVSCPDDYTCCRLQSGKWG--CCPFVQAVCCND---HVHCCPTGYQCNI 1038
Q C SC + CR G G C A D H C G C+
Sbjct: 1396 HNCSQVCSCSNGASCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHSCLCQNGGTCDP 1455
Query: 1039 EKGTCDLETQWVPW---KEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWG 1209
G C W KE +P + + C N G G
Sbjct: 1456 VSGHCSCPEGWAGLACEKECLPGLFGA----SCQHSCRCLNGGLCDPRTGHCLCLAGWTG 1511
Query: 1210 C-CPAPEAVCCSDHQYC--CPKGHTCVGKGHCKRKKDMVTGLNKMPTRRASASQPG-NTT 1377
C +P C++ + C + C + R++ ++ +A PG
Sbjct: 1512 DECQSP----CAEGTFGVRCDEPCACRWEAAATRQRGLLCPPGWRARMCPTACPPGWFGE 1567
Query: 1378 GCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPA---GYTCNVKARTCEKEE 1548
GC QH CP G C + C P + CP G +C K + C E
Sbjct: 1568 GCAQHCQCPPGAACHHVSGE----CHCPPGFTGPGCEQACPPGTFGESCGQKCQ-CPGEN 1622
Query: 1549 DSALPAN 1569
+ PA+
Sbjct: 1623 QACHPAS 1629
Score = 60.8 bits (146), Expect = 2e-09
Identities = 116/515 (22%), Positives = 151/515 (29%), Gaps = 56/515 (10%)
Frame = +1
Query: 238 GVPCKT---KAQCPPGHSCILTTNETSNCCPFPE-AVSCRDGLHCCPQGFHCSADGWSCL 405
G PC + CPPG T ++ CP + C++ C G C + +CL
Sbjct: 1234 GAPCDPVTGQCLCPPGR----TGDDCGAECPEGRWGLGCQEICPACEHGATCEPETGACL 1289
Query: 406 RRPD-TKPSDDILCPNSQF--------HCPNSSTC------CTMLDGSWG-----CCPMP 525
RP T CP + C + + C CT G G CP
Sbjct: 1290 CRPGFTGSRCQDGCPQGHYGPGCGQQCQCEHGAACDHVSGACTCPAGWRGTFCERACP-- 1347
Query: 526 QASCCGDKVH--C-CPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCH 696
A G H C C G SCD CL P ++ + + CP A + H
Sbjct: 1348 -AGFFGVDCHHACNCSAGASCDAVSGSCLCP---------PGRQGPRCSQTCP-AHTYGH 1396
Query: 697 NNSTCCKLSSGKYGCCPLPNATCCSDH------IHCCPHGFVCDPVKKKCFSKENEAIDF 858
N S C S+G C P+ C + CP G D + C + D
Sbjct: 1397 NCSQVCSCSNGA-SCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHSCLCQNGGTCD- 1454
Query: 859 FTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNI 1038
SCP+ + + C P + C H C G C+
Sbjct: 1455 ------------PVSGHCSCPEGWAGLACEKE---CLPGLFGASCQ-HSCRCLNGGLCDP 1498
Query: 1039 EKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEW---- 1206
G C W + + P + + D PC W
Sbjct: 1499 RTGHCLCLAGWTGDECQSPCA---EGTFGVRCDEPCACRWEAAATRQRGLLCPPGWRARM 1555
Query: 1207 ---GCCPAPEAVCCSDHQYCCPKG--HTCVGKGHCKRKKDMVTGLNKMPTRRASASQPGN 1371
C P C+ H C P H G+ HC G +A P
Sbjct: 1556 CPTACPPGWFGEGCAQHCQCPPGAACHHVSGECHCP------PGFTGPGCEQAC---PPG 1606
Query: 1372 TTG--CDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDR-----------QHC-CPAGY 1509
T G C Q CP C S C H C R Q C C G
Sbjct: 1607 TFGESCGQKCQCPGENQACHPASGACVCAAGYHGSGCRQRCPPGRFGPGCEQLCACLNGG 1666
Query: 1510 TCNVKARTCEKEEDSALPANQLARVGDLACGERRF 1614
+C+ C PA L LAC RF
Sbjct: 1667 SCDPATGACR------CPAGFLGTDCGLACPHGRF 1695
>ref|XP_003354310.1| PREDICTED: multiple epidermal growth factor-like domains protein 10
[Sus scrofa].
Length = 1152
Score = 60.1 bits (144), Expect = 4e-09
Identities = 111/505 (21%), Positives = 149/505 (29%), Gaps = 69/505 (13%)
Frame = +1
Query: 232 HLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRR 411
H G C ++ QC + C P A C G GW C R
Sbjct: 80 HWGPHCSSRCQC----------KNRALCNPITGACHCAAGFR-----------GWRCEER 118
Query: 412 PD--TKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDL 585
+ T +D C + + C N +TC + G C P + C D HG C+
Sbjct: 119 CEQGTYGND---C-HQRCQCQNGATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQ 173
Query: 586 A-----HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSS 726
C VT P P CP+ E QCHN TC ++
Sbjct: 174 RCPCQNGGVCHHVTGECPCP--PGWLGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAAT 230
Query: 727 GKYGCCPLPNATCCSDH-------IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TK 867
G+ C P C D + C C +G C V C + A D +
Sbjct: 231 GQCHCSPGYTGERCQDECPVGTYGVGCAETCQCVNGGKCYHVSGSCLCEAGFAGDRCEAR 290
Query: 868 LPAHSVQEVKCDTEVSC-PDDYTCCRLQSGKWGCCPFVQAVCCND------------HVH 1008
L + +KCD C PD+ C SG+ C P + CN+ +
Sbjct: 291 LCPEGLYGIKCDKHCPCHPDNTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQIC 350
Query: 1009 CCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSR-----PDLLAMERDVPCDNXXXXXXX 1173
C G C+ G C + P SL L + D C
Sbjct: 351 SCQNGADCDSVTGKCTCAPGFKGIDCSTPCSLGTYGVNCSSLCGCKNDAMCS-------- 402
Query: 1174 XXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGH---------TCVGKGHCKRKKDMVTGL 1326
G C V CS CP G C+ G C T
Sbjct: 403 -----PVDGSCTCKAGWHGVDCS---ISCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCA 454
Query: 1327 NKMPTRRASASQPGNTTG--CDQHTSCPVGQTCCPSLS-----KGWACCQLPHAVCCEDR 1485
+ T G C + C C P+ GW+ +VC E R
Sbjct: 455 PGWRGEKCEFPCQDGTYGLHCAERCDCSHADGCHPTTGHCRCLPGWSGVHC-DSVCAEGR 513
Query: 1486 --QHC-----CPAGYTCNVKARTCE 1539
+C C G +C+ CE
Sbjct: 514 WGPNCSLPCYCKNGASCSPDDGICE 538
>ref|XP_003126347.2| PREDICTED: prolow-density lipoprotein receptor-related protein 1-like
[Sus scrofa].
Length = 1598
Score = 58.2 bits (139), Expect = 1e-08
Identities = 102/451 (22%), Positives = 143/451 (31%), Gaps = 35/451 (7%)
Frame = +1
Query: 271 PGHSCILTTNETSNCCPFPEAVSCRDGLHC-CPQGFHCSADGWSCLRRPDTKPSDDILCP 447
P H C + SN C +S G C CP F+ DG +C+ C
Sbjct: 344 PNHPCKVNNGGCSNLC----LLSPGGGHKCACPTNFYLGGDGRNCVSN----------CT 389
Query: 448 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM 627
SQF C N + W C D+ CP C +C T T+P
Sbjct: 390 ASQFVCKNDK----CIPFWWKCDTEDDCGDHSDEPPDCPE-FKCRPGQFQCSTGICTNPA 444
Query: 628 --------AKIPSQETIKTAVQCPDAESQCHNNSTCCK---LSSGKYGC--------CP- 747
+ S E C ++ +C N + C +G+ C CP
Sbjct: 445 FICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPE 504
Query: 748 ---LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC 918
PN CS C P +VCD ++N+ +D + PA+ Q E C
Sbjct: 505 VTCAPNQFQCSITKRCIPRVWVCD--------RDNDCVDGSDE-PANCTQMTCGVDEFRC 555
Query: 919 PDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPA 1098
D C +W C D C G + K CD E P++ +
Sbjct: 556 KDSGRCI---PARWKC----------DGEDDCGDG--SDEPKEECD-ERTCEPYQFRCKN 599
Query: 1099 SLSRPDLLAMERDVPCDNXXXXXXXXXXXXXXXGEWGCCPAPEAVCCSDHQYCCPKGHTC 1278
+ P + D C + E C P P CS+ ++ C G
Sbjct: 600 NRCVPGRWQCDYDNDCGD-------------NSDEESCTPRP----CSESEFSCANGRCI 642
Query: 1279 VGKGHCKRKKDMVTGLN-KMPTRRASASQPGNTTG--------CDQHTSCPVG--QTCCP 1425
G+ C D G + K T R Q +G CD C G + C
Sbjct: 643 AGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC- 701
Query: 1426 SLSKGWACCQLPHAVCCEDRQHCCPAGYTCN 1518
S G C L C + C P + C+
Sbjct: 702 --STGVRTCPLDEFQC--NNTLCKPLAWKCD 728
>ref|XP_003358240.1| PREDICTED: scavenger receptor class F member 1 [Sus scrofa].
Length = 830
Score = 55.5 bits (132), Expect = 9e-08
Identities = 86/356 (24%), Positives = 112/356 (31%), Gaps = 39/356 (10%)
Frame = +1
Query: 103 GLVAGTQCPD---GQLCPVACCLDPGGA---SYSCCNPVPDKWPKALSQHLGVPCKTKAQ 264
G ++CP G C C P G + C PD+W G C+
Sbjct: 83 GAQCNSRCPGQYWGPDCRETCTCHPHGQCEPATGVCRCQPDRW--------GSRCEFPCA 134
Query: 265 CPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSD-DIL 441
C P C T +C P + +CR C P C SCL P
Sbjct: 135 CGPHGRCDPETG-ACHCEPGWWSSTCRRPCQCNPAAARCDPATGSCLCEPGWWGRRCSFR 193
Query: 442 CPNSQFHCPNSSTCCTMLDGSWG--C---CPMPQASCCGDKVHC-CPHGTSCDLAHSRCL 603
CP C S C G WG C C + C C CP G +RC
Sbjct: 194 CPCHGSPCAQESGRCACRPGWWGPECRQPCECVRGRCSAASGQCICPPG----FRGARC- 248
Query: 604 TVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIH 783
++P + QC D+ C N C + C P N T C H
Sbjct: 249 ---------ELPCAPG-RYGPQCRDSCGHCKQNEPCSADTGRCESCEPGWNGTQC--HQP 296
Query: 784 C------------CPH---GFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSC 918
C CPH G C P C S + + + P + + D +C
Sbjct: 297 CPPGTFGESCRQQCPHCRLGEACQPDTGHCQSCDPGRLGLRCEDPCPTGTFGE-DCGSTC 355
Query: 919 PDDYTC----CRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQ-------CNIEKGTC 1053
P TC C +G+ C CN CP+G+ C +GTC
Sbjct: 356 P---TCVQGACDAVTGECVCNTGYWGPSCN---ISCPSGFHGNNCSLPCECPEGTC 405
>ref|XP_003354093.1| PREDICTED: fibrillin-3-like [Sus scrofa].
Length = 1816
Score = 51.6 bits (122), Expect = 1e-06
Identities = 74/311 (23%), Positives = 97/311 (31%), Gaps = 40/311 (12%)
Frame = +1
Query: 256 KAQCPPGHSCILTT--NETSNC------CPFPEAVSCRDGLHC-CPQGFHCSADGWSCLR 408
+ CPPGH+ + T + C CP V+ C C GF +AD C+
Sbjct: 228 ECHCPPGHALAMGTACEDIDECSLSDGLCPHGHCVNVIGAFQCSCHHGFQSTADLQGCVD 287
Query: 409 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 588
+ + + Q HC N+ G G MP C D C + CD
Sbjct: 288 TDECRAGNG----GCQVHCVNTEGSYQCSCGQ-GYSLMPDGRACADVNECEENPDICD-- 340
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-CPL- 750
+ +C H C D + N C C+ + G + C C L
Sbjct: 341 NGQCTNEPGGHRCLCYNGFVATLDMRTCVDVDECDLNPHICLHGDCENTRGSFVCHCQLG 400
Query: 751 ----PNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAHSVQ 888
AT CSD C G CD P C + D F + Q
Sbjct: 401 YVIRKGATGCSDLDECELGGHSCDSHASCLNIPGSFSCRCQPGWVGDGFECHDRDECAFQ 460
Query: 889 EVKCDTEVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGYQCN 1035
E C C P Y C C + C C +C N P GY+C
Sbjct: 461 EHGCSPRADCLNIPGSYRCSCHPGFTGDGFSCEDRDECAENVDLCENGQCLNAPGGYRCE 520
Query: 1036 IEKGTCDLETQ 1068
E G E Q
Sbjct: 521 CEMGFNPTEDQ 531
>ref|XP_003123232.2| PREDICTED: fibrillin-3 [Sus scrofa].
Length = 2799
Score = 51.6 bits (122), Expect = 1e-06
Identities = 74/311 (23%), Positives = 97/311 (31%), Gaps = 40/311 (12%)
Frame = +1
Query: 256 KAQCPPGHSCILTT--NETSNC------CPFPEAVSCRDGLHC-CPQGFHCSADGWSCLR 408
+ CPPGH+ + T + C CP V+ C C GF +AD C+
Sbjct: 1089 ECHCPPGHALAMGTACEDIDECSLSDGLCPHGHCVNVIGAFQCSCHHGFQSTADLQGCVD 1148
Query: 409 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 588
+ + + Q HC N+ G G MP C D C + CD
Sbjct: 1149 TDECRAGNG----GCQVHCVNTEGSYQCSCGQ-GYSLMPDGRACADVNECEENPDICD-- 1201
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-CPL- 750
+ +C H C D + N C C+ + G + C C L
Sbjct: 1202 NGQCTNEPGGHRCLCYNGFVATLDMRTCVDVDECDLNPHICLHGDCENTRGSFVCHCQLG 1261
Query: 751 ----PNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAHSVQ 888
AT CSD C G CD P C + D F + Q
Sbjct: 1262 YVIRKGATGCSDLDECELGGHSCDSHASCLNIPGSFSCRCQPGWVGDGFECHDRDECAFQ 1321
Query: 889 EVKCDTEVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGYQCN 1035
E C C P Y C C + C C +C N P GY+C
Sbjct: 1322 EHGCSPRADCLNIPGSYRCSCHPGFTGDGFSCEDRDECAENVDLCENGQCLNAPGGYRCE 1381
Query: 1036 IEKGTCDLETQ 1068
E G E Q
Sbjct: 1382 CEMGFNPTEDQ 1392
>ref|XP_003128799.2| PREDICTED: protein jagged-2 [Sus scrofa].
Length = 1072
Score = 51.2 bits (121), Expect = 2e-06
Identities = 72/294 (24%), Positives = 99/294 (33%), Gaps = 21/294 (7%)
Frame = +1
Query: 244 PCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHC--CPQGFHCSAD-GWSCLRRP 414
P + + CP G+S C P C +G C P GF C GWS
Sbjct: 334 PDQYRCVCPDGYSGRNCERAEHACASNP----CANGGSCHEVPSGFECHCPAGWS----G 385
Query: 415 DTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQ--ASCCGDKVHCCPHGTSCDLA 588
T D C +S C TC +DG CP A+C D C G C A
Sbjct: 386 PTCALDIDECASSP--CAAGGTCVDQVDGFECICPEQWVGATCQLDANEC--EGKPCLNA 441
Query: 589 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 768
S C + + +P + + D QC + TC L +G Y C
Sbjct: 442 FS-CKNLIGGYYCDCVPGWMGVNCHININDCRGQCQHGGTCKDLVNG-YQC--------- 490
Query: 769 SDHIHCCPHGF---VCDPVKKKCFSKE------NEAIDFFTKLPAHSVQEVKCDTEVS-- 915
CP GF C+ +C S + +D F C+ ++
Sbjct: 491 -----VCPRGFGGRHCERELDECASSPCHGGFCQDLVDGFRCHCPQGFSGPLCEVDIDFC 545
Query: 916 ----CPDDYTCCRLQSGKWGCCP-FVQAVCCNDHVHCCPTGYQCNIEKGTCDLE 1062
C + C L+ + CP V C++ CP G C + G C LE
Sbjct: 546 EPSPCQNGAPCYNLEGDYYCACPDHVSGKNCSELREPCPGG-ACRVVDG-CGLE 597
>ref|XP_003359017.1| PREDICTED: keratin-associated protein 10-8-like [Sus scrofa].
Length = 255
Score = 49.3 bits (116), Expect = 6e-06
Identities = 54/225 (24%), Positives = 73/225 (32%), Gaps = 15/225 (6%)
Frame = +1
Query: 184 SCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCC 363
SCC P PC + C P SC+ ++C P C
Sbjct: 41 SCCEP---------------PCCAPSGCAPA-SCLTLICTPASCVSNPCLSGCTSS---- 80
Query: 364 PQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG 543
C+ SC ++ +PS P Q C S CCT + CC +AS C
Sbjct: 81 -----CTT---SCCQQSSCQPSCCTSSPCQQDCCV--SLCCTPVCCKPVCC---EASPCS 127
Query: 544 DKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP--SQETIKTAVQCPDA--ESQCHNNSTC 711
D +C P + C P+ P + T V C A E+ + S+C
Sbjct: 128 DSSYCQPSCCTSSPCQQACCVPVCCRPVCCRPVCCRPVCCTPVCCTPACCEASPCSASSC 187
Query: 712 CKLSSGKYGCC-----------PLPNATCCSDHIHCCPHGFVCDP 813
C+ S CC P+ CC CC C P
Sbjct: 188 CQPSPCPSSCCRPSSSVSLLCRPVCRPACCVPVSSCCAPASSCQP 232
>ref|XP_003134230.2| PREDICTED: prolow-density lipoprotein receptor-related protein 1-like
[Sus scrofa].
Length = 1977
Score = 48.9 bits (115), Expect = 8e-06
Identities = 59/230 (25%), Positives = 74/230 (32%), Gaps = 15/230 (6%)
Frame = +1
Query: 196 PVPDKWPKALSQHLGVPCKTKAQCPP------GHSCILTTNETSNC---CPFPEAVSCRD 348
P P P L VPC+ +C G ++ NC C P C D
Sbjct: 1739 PPPPPRPPLLCTRSSVPCRDGQECVSREYLCDGKRDCEDGSDEENCSYFCNKPGIFQCLD 1798
Query: 349 GLHCCPQGFHCSADGWSCLRRPDT----KPSDDILCPNSQFHCPNSSTCCTMLDGSWGCC 516
G C +HC CL D KP +D HC NSS C + SW C
Sbjct: 1799 GNKCIEVKYHCDGTP-QCLDGSDELDCWKPVED-----CSLHCDNSSRC---VPKSWLCD 1849
Query: 517 PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCH 696
P S D+ C H +C + E QC + +C
Sbjct: 1850 GKPDCSDKKDEQGC---------IHEKC------------SASEFKCENGQCVSSSLRCD 1888
Query: 697 NNSTCCKLSSGKYGC--CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKE 840
N C S + GC PLP CP G V P ++C E
Sbjct: 1889 GNRDCLDYSD-EEGCPARPLP-----------CPSGEVLCPRSRECVLAE 1926
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,034,767
Number of extensions: 1335282
Number of successful extensions: 7564
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7294
Number of HSP's successfully gapped: 14
Length of query: 563
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 459
Effective length of database: 8,754,644
Effective search space: 4018381596
Effective search space used: 4018381596
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007158
(1689 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 494 e-137
>Sscrofa_Chr12
|| Length = 63588571
Score = 494 bits (249), Expect = e-137
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 980 aggctgtctgctgtaacgaccacgtacactgctgcccgaccggatatcagtgtaacatag 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214659 aggctgtctgctgtaacgaccacgtacactgctgcccgaccggatatcagtgtaacatag 19214718
Query: 1040 agaagggcacctgtgacctggagacccagtgggtgccctggaaggagaagatcccggcca 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214719 agaagggcacctgtgacctggagacccagtgggtgccctggaaggagaagatcccggcca 19214778
Query: 1100 gcctcagccggccggacctcctagccatggagagagatgtcccctgtgataacgtctcca 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214779 gcctcagccggccggacctcctagccatggagagagatgtcccctgtgataacgtctcca 19214838
Query: 1160 gctgtccctcctccagtacctgctgtccagtcacgcctggagagtggggctgctgtcctg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214839 gctgtccctcctccagtacctgctgtccagtcacgcctggagagtggggctgctgtcctg 19214898
Query: 1220 ccccagagg 1228
|||||||||
Sbjct: 19214899 ccccagagg 19214907
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1226 aggctgtctgctgctcggaccaccagtactgctgccccaagggccacacgtgtgtcggca 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215141 aggctgtctgctgctcggaccaccagtactgctgccccaagggccacacgtgtgtcggca 19215200
Query: 1286 agggacactgtaagaggaagaaggacatggtgaccggactgaacaagatgcccacccgcc 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215201 agggacactgtaagaggaagaaggacatggtgaccggactgaacaagatgcccacccgcc 19215260
Query: 1346 gggcttccgcgtcccagcccggaaacaccacgggctgtgaccagcacaccagttgcccgg 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215261 gggcttccgcgtcccagcccggaaacaccacgggctgtgaccagcacaccagttgcccgg 19215320
Query: 1406 tggggcagacctgctgcccgagcctgagcaagggctgggcctgctgccagctgccccacg 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215321 tggggcagacctgctgcccgagcctgagcaagggctgggcctgctgccagctgccccacg 19215380
Score = 349 bits (176), Expect = 3e-93
Identities = 208/216 (96%), Gaps = 2/216 (0%)
Strand = Plus / Plus
Query: 1459 ccccacgccgtgtgctgtgaggaccgccagcactgctgcccggctggctacacctgcaac 1518
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215494 ccccaggccgtgtgctgtgaggaccgccagcactgctgcccggctggctacacctgcaac 19215553
Query: 1519 gtgaaggcccgaacatgtgagaaggaggaggactctgccctccctgccaaccaactggcc 1578
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 19215554 gtgaaggcccgaacatgtgagaaggaggaggactctgccctccctgccacccacctggcc 19215613
Query: 1579 cgtgtgggcgacttggcgtgtggggaacggcgcttctgccacaa-aactatacctgctgc 1637
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 19215614 cgtgtgggcgacgtggcgtgtggggaacggcgcttctgccacaacaactatacctgctgc 19215673
Query: 1638 cgaaacagtcttgga-gctgggcctgctgttcctac 1672
||| ||||||||||| |||||||||||||| |||||
Sbjct: 19215674 cgagacagtcttggaggctgggcctgctgtccctac 19215709
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 56 gcaggtggaccatgtggaccctggtgagctgggtggccttggtgacagggctggtggctg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212414 gcaggtggaccatgtggaccctggtgagctgggtggccttggtgacagggctggtggctg 19212473
Query: 116 gaacacagtgcccggatggtcagctctgccccgtggcctgctgcctggacccgggaggag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212474 gaacacagtgcccggatggtcagctctgccccgtggcctgctgcctggacccgggaggag 19212533
Query: 176 ccagctacagctgctgcaatcccgttccgg 205
||||||||||||||||||||||||||||||
Sbjct: 19212534 ccagctacagctgctgcaatcccgttccgg 19212563
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 526 caggcttcctgctgtggagacaaggtgcactgctgcccccacggcacctcctgtgacctg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213528 caggcttcctgctgtggagacaaggtgcactgctgcccccacggcacctcctgtgacctg 19213587
Query: 586 gcccattcccgctgcctcacagtgaccaacacccaccccatggcaaagatcccttcacaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213588 gcccattcccgctgcctcacagtgaccaacacccaccccatggcaaagatcccttcacaa 19213647
Query: 646 gagactataaagacag 661
||||||||||||||||
Sbjct: 19213648 gagactataaagacag 19213663
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 204 ggacaagtggcccaaggcactgagccagcatctgggcgtaccctgcaagactaaagccca 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212686 ggacaagtggcccaaggcactgagccagcatctgggcgtaccctgcaagactaaagccca 19212745
Query: 264 gtgccctcctggccactcctgcatcctcaccaccaatgagacctccaactgctgcccgtt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212746 gtgccctcctggccactcctgcatcctcaccaccaatgagacctccaactgctgcccgtt 19212805
Query: 324 cccagagg 331
||||||||
Sbjct: 19212806 cccagagg 19212813
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 757 gccacctgctgctccgatcacatacactgctgcccccacggctttgtgtgtgacccggtc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214091 gccacctgctgctccgatcacatacactgctgcccccacggctttgtgtgtgacccggtc 19214150
Query: 817 aagaagaagtgcttctccaaggagaatgaagccatagacttcttcaccaagttgccagcg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214151 aagaagaagtgcttctccaaggagaatgaagccatagacttcttcaccaagttgccagcg 19214210
Query: 877 cactcag 883
|||||||
Sbjct: 19214211 cactcag 19214217
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 413 cagataccaagccctcggatgacatcctgtgccccaacagccagttccattgccccaact 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213319 cagataccaagccctcggatgacatcctgtgccccaacagccagttccattgccccaact 19213378
Query: 473 cctccacgtgctgcactatgcttgacggctcctggggctgctgccccatgccccagg 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213379 cctccacgtgctgcactatgcttgacggctcctggggctgctgccccatgccccagg 19213435
Score = 202 bits (102), Expect = 5e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 881 cagtgcaggaggtgaagtgtgacacagaggtgagctgcccggacgactacacctgctgcc 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214470 cagtgcaggaggtgaagtgtgacacagaggtgagctgcccggacgactacacctgctgcc 19214529
Query: 941 gcctgcagtccggaaaatggggctgctgcccttttgtccagg 982
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214530 gcctgcagtccggaaaatggggctgctgcccttttgtccagg 19214571
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 659 cagccgtccagtgcccagatgcagagtcccagtgccacaataattccacctgctgcaagc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213752 cagccgtccagtgcccagatgcagagtcccagtgccacaataattccacctgctgcaagc 19213811
Query: 719 tgtccagtggaaagtatggctgctgcccgttgcccaatg 757
|||||||||||||||||||||||||||||||||||||||
Sbjct: 19213812 tgtccagtggaaagtatggctgctgcccgttgcccaatg 19213850
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 329 aggccgtgtcatgcagggatggcctccactgctgcccgcagggcttccactgcagtgctg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212904 aggccgtgtcatgcagggatggcctccactgctgcccgcagggcttccactgcagtgctg 19212963
Query: 389 atgggtggtcctgcctccgaagaccag 415
|||||||||||||||||||||||||||
Sbjct: 19212964 atgggtggtcctgcctccgaagaccag 19212990
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,390,923
Number of extensions: 314
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 11
Length of query: 1689
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1667
Effective length of database: 2,808,408,574
Effective search space: 4681617092858
Effective search space used: 4681617092858
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)