Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070482.1| granulins [Bos taurus]. 599 e-171
Alignment gi|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 65 1e-10
Alignment gi|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus]. 65 2e-10
Alignment gi|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos... 65 2e-10
Alignment gi|XP_002694223.1| PREDICTED: multiple epidermal growth factor-... 60 6e-09
Alignment gi|XP_873582.3| PREDICTED: multiple epidermal growth factor-lik... 60 6e-09
Alignment gi|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-... 54 4e-07
Alignment gi|XP_001788490.1| PREDICTED: low-density lipoprotein receptor-... 54 4e-07
Alignment gi|NP_777131.1| SCO-spondin precursor [Bos taurus]. 53 7e-07
Alignment gi|XP_002707809.1| PREDICTED: hypothetical protein [Bos taurus]. 52 2e-06
>ref|NP_001070482.1| granulins [Bos taurus].
Length = 587
Score = 599 bits (1545), Expect = e-171
Identities = 254/364 (69%), Positives = 292/364 (80%), Gaps = 1/364 (0%)
Frame = +1
Query: 259 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 438
MWTLVSWVALVTGLV GTQCPDGQLCPVACCLDP GA+YSCCNPV D+ P LSQ LG P
Sbjct: 1 MWTLVSWVALVTGLVVGTQCPDGQLCPVACCLDPNGATYSCCNPVQDQRPSVLSQRLGRP 60
Query: 439 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 618
C+ C PG+SCILT + TS+CCPFPEAVSC DG HCCP+GFHC+ADG SC +R DTKP
Sbjct: 61 CQADGHCAPGYSCILTVSGTSSCCPFPEAVSCGDGRHCCPRGFHCNADGRSCFQRSDTKP 120
Query: 619 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 798
D + CP+ QF CPNSSTCCTM DGSWGCCPMPQASCC DK+HCCPHGTSCDLA RCL+
Sbjct: 121 LDAVQCPDKQFQCPNSSTCCTMPDGSWGCCPMPQASCCEDKIHCCPHGTSCDLARGRCLS 180
Query: 799 VTNTHPMA-KIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIH 975
T THP+A K+P+ +T + + CPD +SQC + STCCKL +GKYGCCP+PNA CCSDH+H
Sbjct: 181 ATGTHPLAKKMPAHKTKSSVILCPDGQSQCPDGSTCCKLPTGKYGCCPMPNAICCSDHLH 240
Query: 976 CCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWG 1155
CCP VCD + KC SKEN A D TKLPAH+VQ+VKCD +VSCPDDYTCCRLQSG WG
Sbjct: 241 CCPQNTVCDLTQSKCLSKEN-ATDLLTKLPAHTVQDVKCDMEVSCPDDYTCCRLQSGAWG 299
Query: 1156 CCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLXPAELLASGKDVP 1335
CCPFVQAVCC DHVHCCP+G++C+ +KG C+ T+ VPW ++ P L +L A DVP
Sbjct: 300 CCPFVQAVCCEDHVHCCPSGFRCDTEKGVCEQGTRQVPWMKKAPAHLSLLDLGAVEGDVP 359
Query: 1336 CDNV 1347
CDNV
Sbjct: 360 CDNV 363
Score = 256 bits (655), Expect = 2e-68
Identities = 135/368 (36%), Positives = 179/368 (48%), Gaps = 24/368 (6%)
Frame = +1
Query: 316 CPDGQLCPVAC--CLDPGGASYSCCNPVPDKWPKALSQHLGVPCKT-KAQCPPGHSCILT 486
CP G C +A CL G +P+ K P ++ + C ++QCP G +C
Sbjct: 165 CPHGTSCDLARGRCLSATGT-----HPLAKKMPAHKTKSSVILCPDGQSQCPDGSTCCKL 219
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPS---------DDILCP 639
CCP P A+ C D LHCCPQ C CL + + D+ C
Sbjct: 220 PTGKYGCCPMPNAICCSDHLHCCPQNTVCDLTQSKCLSKENATDLLTKLPAHTVQDVKC- 278
Query: 640 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHP- 816
+ + CP+ TCC + G+WGCCP QA CC D VHCCP G CD C T P
Sbjct: 279 DMEVSCPDDYTCCRLQSGAWGCCPFVQAVCCEDHVHCCPSGFRCDTEKGVCEQGTRQVPW 338
Query: 817 MAKIPSQET------IKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 978
M K P+ + ++ V C + S C +++TCC+L SG++ CCP P A CCSDH HC
Sbjct: 339 MKKAPAHLSLLDLGAVEGDVPCDNVTS-CPSSTTCCRLKSGEWACCPAPEAVCCSDHQHC 397
Query: 979 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSV-----QEVKCDTKVSCPDDYTCCRLQS 1143
CP G+ C V ++ + + + K+PAH +++ CD SCP TCC
Sbjct: 398 CPKGYTC--VARRHCKRGKQVVTGLDKVPAHRASPSHPRDMGCDQHTSCPVGQTCCPSLR 455
Query: 1144 GKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLXPAELLASG 1323
G W CC AVCC D HCCP GY CN+K +C+ KE +P + PA LASG
Sbjct: 456 GAWACCKLPHAVCCEDRQHCCPAGYTCNVKARSCE--------KEVDP--VHPAVRLASG 505
Query: 1324 KDVPCDNV 1347
V NV
Sbjct: 506 PPVGMGNV 513
Score = 220 bits (561), Expect = 2e-57
Identities = 123/383 (32%), Positives = 166/383 (43%), Gaps = 54/383 (14%)
Frame = +1
Query: 310 TQCPDGQLC------PVACCLDPGGASYS----CC--NPVPD-KWPKALSQHLG------ 432
+QCPDG C CC P S CC N V D K LS+
Sbjct: 208 SQCPDGSTCCKLPTGKYGCCPMPNAICCSDHLHCCPQNTVCDLTQSKCLSKENATDLLTK 267
Query: 433 --------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGW 588
V C + CP ++C + CCPF +AV C D +HCCP GF C +
Sbjct: 268 LPAHTVQDVKCDMEVSCPDDYTCCRLQSGAWGCCPFVQAVCCEDHVHCCPSGFRCDTEKG 327
Query: 589 SCLRRPDTKP-----------------SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMP 717
C + P D+ C N CP+S+TCC + G W CCP P
Sbjct: 328 VCEQGTRQVPWMKKAPAHLSLLDLGAVEGDVPCDNVT-SCPSSTTCCRLKSGEWACCPAP 386
Query: 718 QASCCGDKVHCCPHGTSCDLAHSRCL----TVTNTHPMAKIPSQETIKTAVQCPDAESQC 885
+A CC D HCCP G +C +A C VT + + + + C D + C
Sbjct: 387 EAVCCSDHQHCCPKGYTC-VARRHCKRGKQVVTGLDKVPAHRASPSHPRDMGC-DQHTSC 444
Query: 886 HNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKL- 1062
TCC G + CC LP+A CC D HCCP G+ C+ VK + KE + + +L
Sbjct: 445 PVGQTCCPSLRGAWACCKLPHAVCCEDRQHCCPAGYTCN-VKARSCEKEVDPVHPAVRLA 503
Query: 1063 --PAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKK 1236
P + V+C + C D+ TCC G W CCP+ + CC D HCCP+G++C +
Sbjct: 504 SGPPVGMGNVECGARHFCHDNQTCCPDSQGGWACCPYRKGTCCGDKHHCCPSGFRCAARG 563
Query: 1237 GTC--DLETQW-VPWKEENPXSL 1296
C +W PW++ P L
Sbjct: 564 TKCLRREALRWDAPWRDPTPRQL 586
>ref|XP_002689022.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 65.5 bits (158), Expect = 1e-10
Identities = 82/354 (23%), Positives = 118/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 663
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 664 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 825
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 826 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 969
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVG 314
Query: 970 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTKVSCPDDY 1122
+HC C +G C V C + + D +L + ++CD + C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 1123 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 4e-08
Identities = 81/362 (22%), Positives = 108/362 (29%), Gaps = 38/362 (10%)
Frame = +1
Query: 316 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 487 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 624
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYTGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 625 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 741
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 742 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 921
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 922 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTK 1101
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 1102 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEE 1281
+SCP SG WG F + C C G CN GTC W K E
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1282 NP 1287
P
Sbjct: 527 FP 528
>ref|NP_001039916.2| multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 64.7 bits (156), Expect = 2e-10
Identities = 82/354 (23%), Positives = 118/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 663
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 664 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 825
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 826 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 969
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYPGERCQDECPVG 314
Query: 970 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTKVSCPDDY 1122
+HC C +G C V C + + D +L + ++CD + C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 1123 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 4e-08
Identities = 81/362 (22%), Positives = 108/362 (29%), Gaps = 38/362 (10%)
Frame = +1
Query: 316 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 487 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 624
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYPGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 625 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 741
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 742 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 921
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 922 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTK 1101
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 1102 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEE 1281
+SCP SG WG F + C C G CN GTC W K E
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1282 NP 1287
P
Sbjct: 527 FP 528
>ref|XP_001788534.1| PREDICTED: multiple EGF-like-domains 10 [Bos taurus].
Length = 1136
Score = 64.7 bits (156), Expect = 2e-10
Identities = 82/354 (23%), Positives = 118/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 160
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 663
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEERCEQGTYGND---C-HQRCQCQN 199
Query: 664 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN------THPMAK 825
+TC + G C P + C D HG C+ RC T +
Sbjct: 200 GATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE---QRCPCQNGGVCHHVTGECSC 255
Query: 826 IPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 969
P CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PPGWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYPGERCQDECPVG 314
Query: 970 ---IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTKVSCPDDY 1122
+HC C +G C V C + + D +L + ++CD + C D
Sbjct: 315 TYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCEARLCPEGLYGIRCDKRCPCHVDN 374
Query: 1123 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
T C SG+ C P + CN+ + C G C+ G C
Sbjct: 375 TLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 57.0 bits (136), Expect = 4e-08
Identities = 81/362 (22%), Positives = 108/362 (29%), Gaps = 38/362 (10%)
Frame = +1
Query: 316 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 240 CQNGGVCHHVTGECSCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 292
Query: 487 TNETSNCCPFPEAVSCRD-------GLHC-----CPQGFHCSADGWSCLRRPDTKPS--D 624
T + +C P C+D G+HC C G C SCL +
Sbjct: 293 TGQC-HCSPGYPGERCQDECPVGTYGVHCAETCQCINGGKCYHVSGSCLCEAGFSGDRCE 351
Query: 625 DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG---------------------DK 741
LCP + C +D + C PM C +
Sbjct: 352 ARLCPEGLYGIRCDKRCPCHVDNTLSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQ 411
Query: 742 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSG 921
+ C +G CD +C+ P + I ++ CP G
Sbjct: 412 ICSCQNGADCDSVTGKCICA---------PGFKGIDCSIPCP----------------LG 446
Query: 922 KYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTK 1101
YG + ++ CS C + VC PV C H V D
Sbjct: 447 TYG---INCSSLCS-----CKNDAVCSPVDGSCTCNAGW----------HGV-----DCS 483
Query: 1102 VSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEE 1281
+SCP SG WG F + C C G CN GTC W K E
Sbjct: 484 ISCP---------SGTWG---FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGEKCE 526
Query: 1282 NP 1287
P
Sbjct: 527 FP 528
>ref|XP_002694223.1| PREDICTED: multiple epidermal growth factor-like domains 6-like [Bos
taurus].
Length = 1517
Score = 59.7 bits (143), Expect = 6e-09
Identities = 72/319 (22%), Positives = 93/319 (29%), Gaps = 3/319 (0%)
Frame = +1
Query: 316 CPDGQLCP---VACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G LC V C G C + P W G C + QCPPG +C
Sbjct: 1086 CLNGGLCDPHTVHCLCPAGWTGDKCQSSCPPSW-------FGEACAQRCQCPPGAACHHV 1138
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNS 666
T E +C P SC CP G G C HCP
Sbjct: 1139 TGEC-HCPPGFTGPSCEQA---CPPGTFGERCGQQC-------------------HCPGE 1175
Query: 667 STCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETI 846
+ C G+ C P + C + G C+L CL S + +
Sbjct: 1176 NQACHPASGTCACAPGYHGAGCQQRCPPGRFGPGCELL-CGCLNG---------GSCDAV 1225
Query: 847 KTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 1026
A +CP T C L+ CP ++ C G CDPV C
Sbjct: 1226 TGACRCPAGFL-----GTDCSLA------CPHGRFGPGCAYVCGCGQGAACDPVTGSC-- 1272
Query: 1027 KENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCC 1206
SCP T + G CP + +H C
Sbjct: 1273 --------------------------SCPPGRTGVHCEHG----CPQNRFGVNCEHACSC 1302
Query: 1207 PTGYQCNIKKGTCDLETQW 1263
G C+ G+C W
Sbjct: 1303 RNGGLCHATNGSCSCGLGW 1321
Score = 53.5 bits (127), Expect = 4e-07
Identities = 85/375 (22%), Positives = 111/375 (29%), Gaps = 64/375 (17%)
Frame = +1
Query: 313 QCPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
QCP G C C PG SC P P + G C CP +
Sbjct: 1128 QCPPGAACHHVTGECHCPPGFTGPSCEQACP---PGTFGERCGQQC----HCPGENQACH 1180
Query: 484 TTNETSNCCPFPEAVSC-------RDGLHC-----CPQGFHCSADGWSCLRRPDTKPSD- 624
+ T C P C R G C C G C A +C +D
Sbjct: 1181 PASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCGCLNGGSCDAVTGACRCPAGFLGTDC 1240
Query: 625 DILCPNSQFHCPNSSTC-------CTMLDGSWGC------------CPMPQASCCGDKVH 747
+ CP+ +F + C C + GS C CP + +
Sbjct: 1241 SLACPHGRFGPGCAYVCGCGQGAACDPVTGSCSCPPGRTGVHCEHGCPQNRFGVNCEHAC 1300
Query: 748 CCPHGTSCDLAHSRC---LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----- 903
C +G C + C L T H P+ + C E CHN+ C
Sbjct: 1301 SCRNGGLCHATNGSCSCGLGWTGPHCELACPAG---RYGAAC-SLECSCHNHGACEPTSG 1356
Query: 904 -CKLSSGKYG------CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTK- 1059
C+ G YG C P + C C HG CDPV +C F +
Sbjct: 1357 ACRCGPGFYGQACEHSCPPGFHGAGCQQTCQC-QHGAPCDPVSGQCLCPAGLHGQFCERG 1415
Query: 1060 -----LPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCC-------PFVQAVCCNDHVHC 1203
Q+ C+ V C C G+ G F C +HC
Sbjct: 1416 CEPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCA---LHC 1472
Query: 1204 -CPTGYQCNIKKGTC 1245
C G C+ G C
Sbjct: 1473 SCGGGADCDPVSGQC 1487
>ref|XP_873582.3| PREDICTED: multiple epidermal growth factor-like domains 6-like [Bos
taurus].
Length = 1517
Score = 59.7 bits (143), Expect = 6e-09
Identities = 72/319 (22%), Positives = 93/319 (29%), Gaps = 3/319 (0%)
Frame = +1
Query: 316 CPDGQLCP---VACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G LC V C G C + P W G C + QCPPG +C
Sbjct: 1086 CLNGGLCDPHTVHCLCPAGWTGDKCQSSCPPSW-------FGEACAQRCQCPPGAACHHV 1138
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNS 666
T E +C P SC CP G G C HCP
Sbjct: 1139 TGEC-HCPPGFTGPSCEQA---CPPGTFGERCGQQC-------------------HCPGE 1175
Query: 667 STCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETI 846
+ C G+ C P + C + G C+L CL S + +
Sbjct: 1176 NQACHPASGTCACAPGYHGAGCQQRCPPGRFGPGCELL-CGCLNG---------GSCDAV 1225
Query: 847 KTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 1026
A +CP T C L+ CP ++ C G CDPV C
Sbjct: 1226 TGACRCPAGFL-----GTDCSLA------CPHGRFGPGCAYVCGCGQGAACDPVTGSC-- 1272
Query: 1027 KENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCC 1206
SCP T + G CP + +H C
Sbjct: 1273 --------------------------SCPPGRTGVHCEHG----CPQNRFGVNCEHACSC 1302
Query: 1207 PTGYQCNIKKGTCDLETQW 1263
G C+ G+C W
Sbjct: 1303 RNGGLCHATNGSCSCGLGW 1321
Score = 53.5 bits (127), Expect = 4e-07
Identities = 85/375 (22%), Positives = 111/375 (29%), Gaps = 64/375 (17%)
Frame = +1
Query: 313 QCPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
QCP G C C PG SC P P + G C CP +
Sbjct: 1128 QCPPGAACHHVTGECHCPPGFTGPSCEQACP---PGTFGERCGQQC----HCPGENQACH 1180
Query: 484 TTNETSNCCPFPEAVSC-------RDGLHC-----CPQGFHCSADGWSCLRRPDTKPSD- 624
+ T C P C R G C C G C A +C +D
Sbjct: 1181 PASGTCACAPGYHGAGCQQRCPPGRFGPGCELLCGCLNGGSCDAVTGACRCPAGFLGTDC 1240
Query: 625 DILCPNSQFHCPNSSTC-------CTMLDGSWGC------------CPMPQASCCGDKVH 747
+ CP+ +F + C C + GS C CP + +
Sbjct: 1241 SLACPHGRFGPGCAYVCGCGQGAACDPVTGSCSCPPGRTGVHCEHGCPQNRFGVNCEHAC 1300
Query: 748 CCPHGTSCDLAHSRC---LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----- 903
C +G C + C L T H P+ + C E CHN+ C
Sbjct: 1301 SCRNGGLCHATNGSCSCGLGWTGPHCELACPAG---RYGAAC-SLECSCHNHGACEPTSG 1356
Query: 904 -CKLSSGKYG------CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTK- 1059
C+ G YG C P + C C HG CDPV +C F +
Sbjct: 1357 ACRCGPGFYGQACEHSCPPGFHGAGCQQTCQC-QHGAPCDPVSGQCLCPAGLHGQFCERG 1415
Query: 1060 -----LPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCC-------PFVQAVCCNDHVHC 1203
Q+ C+ V C C G+ G F C +HC
Sbjct: 1416 CEPGSFGEGCGQQCDCELGVPCDPVTGHCLCPPGRTGTTCDLGCRRGFFGPGCA---LHC 1472
Query: 1204 -CPTGYQCNIKKGTC 1245
C G C+ G C
Sbjct: 1473 SCGGGADCDPVSGQC 1487
>ref|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like
[Bos taurus].
Length = 4680
Score = 53.5 bits (127), Expect = 4e-07
Identities = 83/335 (24%), Positives = 113/335 (33%), Gaps = 59/335 (17%)
Frame = +1
Query: 388 PVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE----TSNCCPFPEAVSCRDGLHCC 555
PV + S H G + +C C+ ++E TSN P A C+ HC
Sbjct: 1057 PVEQCGTLSFSCHNGRCVPLQYRCDGFDDCLDNSDEAQCTTSNATCSPLAFECKREGHCI 1116
Query: 556 PQGFHC--------SADGWSC-LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG-- 702
P + C +D +C R P + +D C N+ F P S C T D G
Sbjct: 1117 PSMWRCDGEDDCLDGSDEQNCPTRAPTSCRADQFTCDNN-FCIPRSWVCDTDNDCKDGSD 1175
Query: 703 --CCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAK--IPSQETIKTAVQCPD 870
C Q +C + HC H RC+ +T K + I + C
Sbjct: 1176 EKSCNYTQ-TCSPTQFHCPDH---------RCIALTFVCDGTKDCADGSDEIGCVINCTA 1225
Query: 871 AESQCHNNSTC------------CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKK 1014
++ C +N C C S + C P C D C G +C P
Sbjct: 1226 SQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTRPPGMCHQDEFQCQEDG-ICIPKTW 1284
Query: 1015 KC--------FSKENEAIDFFTKLPAHSV--------QEVKCDTKVSCPD--DYTCCRLQ 1140
+C S E+ T P+H V + CD C D D C Q
Sbjct: 1285 ECDGHEDCLQGSDEHNGCPPKTCHPSHFVCQNGNCIYRNWLCDGDNDCGDMSDEKDCPTQ 1344
Query: 1141 -----SGKWGC-----CPFVQAVCCNDHVHCCPTG 1215
S +W C C + AVC D V CP G
Sbjct: 1345 PFQCPSWQWQCPGHSICVNLSAVC--DGVSDCPGG 1377
>ref|XP_001788490.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like,
partial [Bos taurus].
Length = 4579
Score = 53.5 bits (127), Expect = 4e-07
Identities = 83/335 (24%), Positives = 113/335 (33%), Gaps = 59/335 (17%)
Frame = +1
Query: 388 PVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE----TSNCCPFPEAVSCRDGLHCC 555
PV + S H G + +C C+ ++E TSN P A C+ HC
Sbjct: 956 PVEQCGTLSFSCHNGRCVPLQYRCDGFDDCLDNSDEVQCTTSNATCSPLAFECKREGHCI 1015
Query: 556 PQGFHC--------SADGWSC-LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG-- 702
P + C +D +C R P + +D C N+ F P S C T D G
Sbjct: 1016 PSMWRCDGEDDCLDGSDEQNCPTRAPTSCRADQFTCDNN-FCIPRSWVCDTDNDCKDGSD 1074
Query: 703 --CCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAK--IPSQETIKTAVQCPD 870
C Q +C + HC H RC+ +T K + I + C
Sbjct: 1075 EKSCNYTQ-TCSPTQFHCPDH---------RCIALTFVCDGTKDCADGSDEIGCVINCTA 1124
Query: 871 AESQCHNNSTC------------CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKK 1014
++ C +N C C S + C P C D C G +C P
Sbjct: 1125 SQFTCVSNGQCISKTYRCDGVFDCDDHSDETDCPTRPPGMCHQDEFQCQEDG-ICIPKTW 1183
Query: 1015 KC--------FSKENEAIDFFTKLPAHSV--------QEVKCDTKVSCPD--DYTCCRLQ 1140
+C S E+ T P+H V + CD C D D C Q
Sbjct: 1184 ECDGHEDCLQGSDEHNGCPPKTCHPSHFVCQNGNCIYRNWLCDGDNDCGDMSDEKDCPTQ 1243
Query: 1141 -----SGKWGC-----CPFVQAVCCNDHVHCCPTG 1215
S +W C C + AVC D V CP G
Sbjct: 1244 PFQCPSWQWQCPGHSICVNLSAVC--DGVSDCPGG 1276
>ref|NP_777131.1| SCO-spondin precursor [Bos taurus].
Length = 5146
Score = 52.8 bits (125), Expect = 7e-07
Identities = 66/263 (25%), Positives = 86/263 (32%), Gaps = 39/263 (14%)
Frame = +1
Query: 277 WVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQ 456
W V G CP+G L CL+P P +W + P T Q
Sbjct: 1297 WPCRAVACVEGCFCPEGTLLHGGVCLEPAAC--------PCEWGGSF-----FPPGTVLQ 1343
Query: 457 CPPGHSCILTTNETSNCC---------PFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD 609
G++C T E+ C P P C +G C + HC GW C + D
Sbjct: 1344 KDCGNNC--TCRESQWLCGDDGGRCVEPGP---GCAEGETPCRESGHCVPHGWLCDNQDD 1398
Query: 610 TKPSDD------ILCPNSQFHCPNSSTCCTML---DGSWGC--------CPMPQASCCGD 738
D +C Q C S C ++ DG C CP PQ S
Sbjct: 1399 CGDGSDEEGCATRVCGEGQVSC-CSGRCLPLVLLCDGQDDCGDGMDEQGCPCPQDSLTCA 1457
Query: 739 KVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC---CK 909
HC P CD H C + +E+ V C E C + TC +
Sbjct: 1458 DGHCLPPARLCD-GHPDCPDGAD---------EESCLGQVDCAPGEVSC-VDGTCLGAIQ 1506
Query: 910 LSSGKYGC----------CPLPN 948
L G + C CPLP+
Sbjct: 1507 LCDGVWDCLDGGDEGPGHCPLPS 1529
>ref|XP_002707809.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 281
Score = 51.6 bits (122), Expect = 2e-06
Identities = 72/298 (24%), Positives = 89/298 (29%), Gaps = 14/298 (4%)
Frame = +1
Query: 334 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPP-----------GHSCI 480
C CC P SCC P P C+T + P G SC
Sbjct: 24 CVTTCC-QPTCCESSCCRPCCP--PTCYQSSENTCCRTTCRKPTCVTTCCQHNCGGSSCC 80
Query: 481 LTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP--SDDILCPNSQFH 654
+ S+C P +C CC G + G SC + P ++P C +
Sbjct: 81 ----QPSSCAPVYCHRTCYHPTCCCLPGCRDQSCGSSCCQ-PCSRPVCCQTTCCRTTCCK 135
Query: 655 CPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPS 834
+TCC CC ++SCC CCP T C R T
Sbjct: 136 PTCVTTCCQPTCCGNTCC---ESSCCKP---CCPP-TCCQTTCCRTTCCRPTCVTTCCQP 188
Query: 835 QETIKTAVQCPDAESQC-HNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVK 1011
K Q ES C H +S+C C P+ C +CC G
Sbjct: 189 SCCSKPCCQPTCCESICCHGSSSCGSSCCQASSCAPVYXHRTCYHPTYCCLPGCQDQSCG 248
Query: 1012 KKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCC 1185
C C VSC TCCR S CC Q CC
Sbjct: 249 PSCCQ--------------------PCCRPVSCLT--TCCRTTSCHPSCC---QPSCC 281
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,914,058
Number of extensions: 1716339
Number of successful extensions: 8960
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8584
Number of HSP's successfully gapped: 23
Length of query: 449
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 344
Effective length of database: 14,207,134
Effective search space: 4887254096
Effective search space used: 4887254096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537620.2| PREDICTED: similar to granulin isoform 1 precur... 595 e-170
Alignment gi|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis fam... 62 1e-09
Alignment gi|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple... 59 8e-09
Alignment gi|XP_542124.2| PREDICTED: similar to Fibrillin-3 precursor [Ca... 54 4e-07
Alignment gi|XP_538847.2| PREDICTED: similar to Neurogenic locus notch ho... 52 1e-06
Alignment gi|XP_535946.2| PREDICTED: similar to Low-density lipoprotein r... 49 8e-06
>ref|XP_537620.2| PREDICTED: similar to granulin isoform 1 precursor [Canis
familiaris].
Length = 642
Score = 595 bits (1534), Expect = e-170
Identities = 273/457 (59%), Positives = 310/457 (67%), Gaps = 16/457 (3%)
Frame = +1
Query: 25 PSLQPESGQQDKSEEA*GWTPKKQVEPGVDALQGAA------GIGEERERATGQDWASSA 186
PS + GQ +S + PG G + G + A G +
Sbjct: 36 PSSRGRKGQSPRSTHLALGRCSRCAAPGAQRAHGRSAAAQPVGARQPGRLANGNGGGRAV 95
Query: 187 LPGQETASWRWSLS*ES*PRRRWTMWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGG 366
P S L E R TMWTLVSWVALV GLVAGTQCPDGQ CPVACCLDPGG
Sbjct: 96 APQALVPSCPARLRSERGAGHRQTMWTLVSWVALVAGLVAGTQCPDGQFCPVACCLDPGG 155
Query: 367 ASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGL 546
ASYSCCNP+P KWP LS+HLG PC+ A C PG+SC+LT TS+CCPFPEAVSC DG
Sbjct: 156 ASYSCCNPIPGKWPTELSRHLGRPCQLDAHCSPGYSCLLTILGTSSCCPFPEAVSCADGR 215
Query: 547 HCCPQGFHCSADGWSCLRRPDTK---------PSDDILCPNSQFHCPNSSTCCTMLDGSW 699
HCCP+G+HCSADG SC +R P I CP+SQF CPNSSTCCTMLDGSW
Sbjct: 216 HCCPRGYHCSADGRSCFQRSGAAGVETGLWGFPLGAIQCPDSQFLCPNSSTCCTMLDGSW 275
Query: 700 GCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMA-KIPSQETIKTAVQCPDAE 876
GCCPMPQASCC DKVHCCPHGTSCDLAH+RCLT T +HP+A KIP+Q + + V CPD
Sbjct: 276 GCCPMPQASCCEDKVHCCPHGTSCDLAHARCLTATGSHPLAKKIPAQRSNRAGVICPDGR 335
Query: 877 SQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFT 1056
SQC + STCC+L SGKYGCCP+P+A CCSDH+HCCP VCD V+ KC SKEN A D T
Sbjct: 336 SQCPDGSTCCELPSGKYGCCPMPHAICCSDHLHCCPQDTVCDLVRSKCLSKEN-ATDLLT 394
Query: 1057 KLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKK 1236
KLPAH+VQEVKCD +VSCPD YTCCRLQSG WGCCPF QAVCC DHVHCCP G++C+ K
Sbjct: 395 KLPAHTVQEVKCDMEVSCPDGYTCCRLQSGAWGCCPFAQAVCCEDHVHCCPAGFKCDTAK 454
Query: 1237 GTCDLETQWVPWKEENPXSLXPAELLASGKDVPCDNV 1347
GTC+ +PW + P L A+ DVPCDNV
Sbjct: 455 GTCEQNAPQMPWMVQAPARLQLLNPQATENDVPCDNV 491
Score = 242 bits (617), Expect = 7e-64
Identities = 129/346 (37%), Positives = 170/346 (49%), Gaps = 27/346 (7%)
Frame = +1
Query: 316 CPDGQLCPVAC--CLDPGGASYSCCNPVPDKWPKALSQHLGVPCKT-KAQCPPGHSCILT 486
CP G C +A CL G+ +P+ K P S GV C ++QCP G +C
Sbjct: 293 CPHGTSCDLAHARCLTATGS-----HPLAKKIPAQRSNRAGVICPDGRSQCPDGSTCCEL 347
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPS---------DDILCP 639
+ CCP P A+ C D LHCCPQ C CL + + ++ C
Sbjct: 348 PSGKYGCCPMPHAICCSDHLHCCPQDTVCDLVRSKCLSKENATDLLTKLPAHTVQEVKC- 406
Query: 640 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHP- 816
+ + CP+ TCC + G+WGCCP QA CC D VHCCP G CD A C P
Sbjct: 407 DMEVSCPDGYTCCRLQSGAWGCCPFAQAVCCEDHVHCCPAGFKCDTAKGTCEQNAPQMPW 466
Query: 817 MAKIPSQ------ETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 978
M + P++ + + V C + S C +++TCC+L SG++GCCP P A CC D HC
Sbjct: 467 MVQAPARLQLLNPQATENDVPCDNVTS-CPSSNTCCRLMSGEWGCCPAPEAVCCEDRQHC 525
Query: 979 CPHGFVCDPVKKKCFSKENEAIDFFTKL---PAHSVQEVKCDTKVSCP-----DDYTCCR 1134
CP G+ C+ VK + KE ++ +L P V VKC P D+ TCCR
Sbjct: 526 CPAGYTCN-VKARSCEKEADSTHLAVRLARGPRVGVGNVKCGEGHLPPAPTHHDNQTCCR 584
Query: 1135 LQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPW 1272
G W CCP+ Q VCC D HCCPTG+ C KGT L + + W
Sbjct: 585 DSRGGWACCPYHQGVCCADQRHCCPTGFHCG-AKGTKCLRRESLRW 629
Score = 176 bits (446), Expect = 5e-44
Identities = 102/315 (32%), Positives = 137/315 (43%), Gaps = 60/315 (19%)
Frame = +1
Query: 304 AGTQCPDGQL-CP--VACCLDPGGASYSCCNPVPDKW-------------------PKAL 417
AG CPDG+ CP CC P G Y CC P+P K L
Sbjct: 327 AGVICPDGRSQCPDGSTCCELPSG-KYGCC-PMPHAICCSDHLHCCPQDTVCDLVRSKCL 384
Query: 418 SQHLG--------------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCC 555
S+ V C + CP G++C + CCPF +AV C D +HCC
Sbjct: 385 SKENATDLLTKLPAHTVQEVKCDMEVSCPDGYTCCRLQSGAWGCCPFAQAVCCEDHVHCC 444
Query: 556 PQGFHCSADGWSCLRRPDTKP-----------------SDDILCPNSQFHCPNSSTCCTM 684
P GF C +C + P +D+ C N CP+S+TCC +
Sbjct: 445 PAGFKCDTAKGTCEQNAPQMPWMVQAPARLQLLNPQATENDVPCDNVT-SCPSSNTCCRL 503
Query: 685 LDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRC-LTVTNTHPMAKIPSQETIKTA-V 858
+ G WGCCP P+A CC D+ HCCP G +C++ C +TH ++ + V
Sbjct: 504 MSGEWGCCPAPEAVCCEDRQHCCPAGYTCNVKARSCEKEADSTHLAVRLARGPRVGVGNV 563
Query: 859 QC-----PDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCF 1023
+C P A + H+N TCC+ S G + CCP CC+D HCCP GF C KC
Sbjct: 564 KCGEGHLPPAPTH-HDNQTCCRDSRGGWACCPYHQGVCCADQRHCCPTGFHCGAKGTKCL 622
Query: 1024 SKENEAIDFFTKLPA 1068
+E+ D + PA
Sbjct: 623 RRESLRWDMPLRDPA 637
>ref|XP_531893.2| PREDICTED: similar to MEGF10 protein [Canis familiaris].
Length = 1548
Score = 62.0 bits (149), Expect = 1e-09
Identities = 83/352 (23%), Positives = 118/352 (33%), Gaps = 41/352 (11%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 523 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNGALC---- 571
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 663
N + C C GF GW C R + T +D C + + C N
Sbjct: 572 NPITGACH-------------CAAGFR----GWRCEDRCEQGTYGND---C-HQRCQCQN 610
Query: 664 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM---AKIPS 834
+T C + G C P + C D HG C+ C H + PS
Sbjct: 611 GAT-CDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE-QRCPCQNGGICHHVTGECSCPS 668
Query: 835 QETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH------ 969
Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 669 GWLGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVGTY 727
Query: 970 -IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TKLPAHSVQEVKCDTKVSCPDDYT- 1125
+ C C +G C V C + A + +L + +KCD + C D T
Sbjct: 728 GVRCAETCQCVNGGKCYHVSGSCLCEAGFAGEHCEARLCPEGLYGIKCDKRCPCHLDNTH 787
Query: 1126 CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
C SG+ C P + CN+ + C G C+ G C
Sbjct: 788 SCHPMSGECACKPGWSGLYCNETCSPGFFGEACQQICSCHNGADCDSVTGKC 839
Score = 57.8 bits (138), Expect = 2e-08
Identities = 101/399 (25%), Positives = 130/399 (32%), Gaps = 74/399 (18%)
Frame = +1
Query: 313 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
QC +G LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 564 QCKNGALCNPITGACHCAAGFRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 616
Query: 484 TTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK--------------PS 621
T E C P C D CP G H G C +R + PS
Sbjct: 617 VTGEC-RCPPGYTGAFCED---LCPPGKH----GPQCEQRCPCQNGGICHHVTGECSCPS 668
Query: 622 DDI------LCPNSQF--------HCPNSSTCCTMLDGSWGCCPMPQASCCGDK------ 741
+ CP +F C N TC G C P C D+
Sbjct: 669 GWLGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAATGQCHCSPGYTGERCQDECPVGTY 727
Query: 742 -VHC-----CPHGTSCDLAHSRCLT---VTNTHPMAKIPSQET--IKTAVQCPDAESQCH 888
V C C +G C CL H A++ + IK +CP CH
Sbjct: 728 GVRCAETCQCVNGGKCYHVSGSCLCEAGFAGEHCEARLCPEGLYGIKCDKRCP-----CH 782
Query: 889 -NNSTCCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSK 1029
+N+ C SG+ C P N TC I C +G CD V KC
Sbjct: 783 LDNTHSCHPMSGECACKPGWSGLYCNETCSPGFFGEACQQICSCHNGADCDSVTGKCICA 842
Query: 1030 EN-EAIDFFTKLPAHSVQEVKCDTKVSCPDDYTC------CRLQSGKWGC-----CPF-V 1170
+ ID P + + C + C +D C C ++G G CP
Sbjct: 843 PGFKGIDCSIPCPLETYG-INCSSLCGCKNDAVCSPVDGSCTCKAGWHGVDCSISCPSGT 901
Query: 1171 QAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENP 1287
CN C G CN + GTC W K E P
Sbjct: 902 WGFSCNLTCQCLHGG-ACNTQDGTCTCAPGWRGDKCELP 939
>ref|XP_546739.2| PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris].
Length = 1534
Score = 59.3 bits (142), Expect = 8e-09
Identities = 77/343 (22%), Positives = 104/343 (30%), Gaps = 39/343 (11%)
Frame = +1
Query: 343 ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPE 522
AC PG C N P W G C + QCPPG +C T E
Sbjct: 1112 ACLCPPGWRGSRCENACPHGW-------FGEACAQRCQCPPGAACHHVTGE--------- 1155
Query: 523 AVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQF--------HCPNSSTCC 678
CR CP+GF T P + CP F HCP + C
Sbjct: 1156 ---CR-----CPRGF--------------TGPGCEQACPPGTFGESCGQKCHCPGENQAC 1193
Query: 679 TMLDGSWGCCPMPQASCC-----------GDKVHC-CPHGTSCDLAHSRCLTVTNTHPMA 822
G+ C S C G + C C +G SCD A CL P
Sbjct: 1194 HPALGTCVCAAGYHGSGCRQRCPPGRFGPGCEQPCGCLNGGSCDAATGACLC-----PAG 1248
Query: 823 KIPSQETIKTAVQCPDAE--SQCHNNSTC-----CKLSSGKYGCCPLPNATCCS------ 963
+ + ++ CP C + C C +G C P T C
Sbjct: 1249 FLGAD----CSLSCPQGHFGPGCAHVCGCGQAVTCDPVTGSCACPPGTTGTHCEHGCPQN 1304
Query: 964 ------DHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYT 1125
+H+ C +G +C C + C + SC ++ T
Sbjct: 1305 RFGVNCEHVCSCRNGGLCHASDGSCSCGLGWTGPNCEQACPPGHYGAACRLECSCQNNGT 1364
Query: 1126 CCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLE 1254
C +G C P C H CP G+ + C+ +
Sbjct: 1365 -CEPTTGACRCGPGFYGQACQ---HACPPGFHGAGCRAACECQ 1403
Score = 53.5 bits (127), Expect = 4e-07
Identities = 97/415 (23%), Positives = 122/415 (29%), Gaps = 84/415 (20%)
Frame = +1
Query: 292 TGLVAGTQCPDG-------QLCPV------------ACCLDPGGASYSCCNPVPDKWPKA 414
TG G CP+G ++CP AC PG C + P W
Sbjct: 731 TGDDCGADCPEGRWGLGCQEICPACEHGAACEPGTGACLCRPGYVGSRCQDTCPAGW--- 787
Query: 415 LSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCR----------DGLH---CC 555
G C+ + C C T S C P +SC+ D H C
Sbjct: 788 ----FGPGCQMRCSCANDGLCHPVTGHCS-CAPGWTGLSCQRACDGGRWGPDCSHPCTCS 842
Query: 556 PQGFHCSADGWSCLRRPD-TKPSDDILCPNSQF--------HCPNSSTC------CTMLD 690
P C A C+ T P + CP F C + + C CT
Sbjct: 843 PGHGSCDAVSGLCVCEAGYTGPRCEQRCPQGHFGPGCGRQCQCEHGAACDHVSGACTCPA 902
Query: 691 GSWGC-----CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN-----------THPMA 822
G G CP V C G CD CL H
Sbjct: 903 GWRGALCERACPAGFFGLDCRGVCDCAAGAPCDSVSGSCLCPAGRQGPRCDQACPAHTYG 962
Query: 823 KIPSQE-TIKTAVQCPDAESQCH-----NNSTCCKLSSGKYGCCPLPNATCCSDHIHCCP 984
SQ + C QCH STC + CP + H C
Sbjct: 963 HNCSQTCSCFNGASCDPVHGQCHCGPGWMGSTCLE-------ACPTGSYGQNCQHTCLCQ 1015
Query: 985 HGFVCDPVKKKC--------FSKENEAI-DFFTKLPAHSVQEVK---CDTKVS---CPDD 1119
HG CDPV C + E E + F HS + + CD + CP
Sbjct: 1016 HGGTCDPVSGHCTCPEGWTGLACEEECLPGRFGAGCKHSCRCLNGGDCDRRSGRCLCPAG 1075
Query: 1120 YTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEEN 1284
+T + QS C V C +H C G C+ G C W + EN
Sbjct: 1076 WTGDQCQS---LCAEGTFGVRCEEHC-ACRRGATCHHVTGACLCPPGWRGSRCEN 1126
>ref|XP_542124.2| PREDICTED: similar to Fibrillin-3 precursor [Canis familiaris].
Length = 2801
Score = 53.5 bits (127), Expect = 4e-07
Identities = 79/307 (25%), Positives = 101/307 (32%), Gaps = 43/307 (14%)
Frame = +1
Query: 448 KAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHC----SADGWSCLRRPDTK 615
K QCPPGH+ LT +T+ C + S D L CP G HC A SC +
Sbjct: 1089 KCQCPPGHA--LTAKDTA--CEDVDECSLSDSL--CPHG-HCVNVIGAFQCSCHAGFQST 1141
Query: 616 PSDDILCPNSQFHCPNS--STCCTMLDGSWGC------CPMPQASCCGDKVHCCPHGTSC 771
P ++ H N CT +GS+ C MP C D C + C
Sbjct: 1142 PDRQGCMDINECHSGNGGCDVHCTNTEGSYRCGCGHGYSLMPNGRACADVDECAENPDIC 1201
Query: 772 DLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-C 936
D +C V H + C D N C C+ + G + C C
Sbjct: 1202 D--GGQCANVPGGHHCLCYDGFMATPDSRTCIDVNECDLNPHICLHGDCENTKGSFVCHC 1259
Query: 937 P-----LPNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAH 1071
AT CSD C G CD P C + D F L
Sbjct: 1260 QRGYVIRKGATGCSDVDECELGGHSCDSHASCLNVPGSFSCRCQPGWVGDGFACHDLDEC 1319
Query: 1072 SVQEVKCDTKVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGY 1218
+ E C + C P Y C CR + C C +C N P GY
Sbjct: 1320 AFWEHGCSLRADCLNVPGSYRCVCRQGFMGDGFSCEDRDECAEDVDLCENGQCLNAPGGY 1379
Query: 1219 QCNIKKG 1239
+C + G
Sbjct: 1380 RCECEMG 1386
>ref|XP_538847.2| PREDICTED: similar to Neurogenic locus notch homolog protein 4
precursor (Notch 4) (hNotch4) [Canis familiaris].
Length = 1778
Score = 52.4 bits (124), Expect = 1e-06
Identities = 90/394 (22%), Positives = 124/394 (31%), Gaps = 83/394 (21%)
Frame = +1
Query: 307 GTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHS---C 477
G+ C D L CL P G C D+ A PC +A C G + C
Sbjct: 481 GSTCLD--LLATFHCLCPPGLEGQFCEVETDECASA-------PCLNQADCHDGLNSFLC 531
Query: 478 ILTTNETSNCC----------PFPEAVSCRD---GLHC-CPQGF---HCSADGWSCLRRP 606
+ T + C P C+D HC C GF HC A+ CL P
Sbjct: 532 VCLPGFTGSQCEEDINECASSPCANGGQCQDQPGSFHCECLPGFEGPHCQAEVDECLSGP 591
Query: 607 --------DTKPSDDILCPN------------SQFHCPNSSTC-----CTMLDGSWGCCP 711
D + LCP+ + C C C DGS GC P
Sbjct: 592 CPTGASCLDLPGAFSCLCPSGFTGHLCEVPLCAPSLCQPKQKCQDKAHCLCPDGSPGCAP 651
Query: 712 MPQASCCGDKVHC------CP---HGTSCDLAHSRCLTVTNTHPMAKIPSQETIK----- 849
+ + +C HC C G +C+ C++V H P
Sbjct: 652 I-EDNCTCHHGHCQRSSCVCDVGWTGPACEAELGGCISVPCAHGGTCHPQPSGYNCTCPP 710
Query: 850 --TAVQCPDAESQCHN----NSTCCKLSSGKYGCCPLPNAT---CCSDHIHC----CPHG 990
T C + + CH+ N C S Y C P+ T C + HC C +G
Sbjct: 711 GHTGPTCSEEVTACHSGPCLNGGSCSPSPRGYSCTCPPSHTGPRCQTSTDHCASAPCLNG 770
Query: 991 FVC--DPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSC---PDDYTCCRLQSGKWG 1155
C P C + S + C + +C P C G
Sbjct: 771 GACVNRPGTSSCLCAAGFQGPHCEERTRPSCADNPCRNRATCQDGPQGPHCLCSPGYTGG 830
Query: 1156 CCPFVQAVC----CNDHVHCCPTG--YQCNIKKG 1239
C + +C C + +C TG +QC +G
Sbjct: 831 TCQTLMDLCAQKPCPHNSYCLQTGPSFQCLCLQG 864
Score = 51.2 bits (121), Expect = 2e-06
Identities = 90/383 (23%), Positives = 123/383 (32%), Gaps = 83/383 (21%)
Frame = +1
Query: 316 CPDGQLCPVACCLDPGGASYSC------CNPVPDKWPKALSQHLGV----PCKTKAQCPP 465
C G +C D G +C C VP H G P CPP
Sbjct: 658 CHHGHCQRSSCVCDVGWTGPACEAELGGCISVP-------CAHGGTCHPQPSGYNCTCPP 710
Query: 466 GHSCILTTNETS-----------NCCPFPEAVSC-----RDGLHCCPQGFHCSA----DG 585
GH+ + E + +C P P SC G C HC++ +G
Sbjct: 711 GHTGPTCSEEVTACHSGPCLNGGSCSPSPRGYSCTCPPSHTGPRCQTSTDHCASAPCLNG 770
Query: 586 WSCLRRPDTKPSDDILC------PNSQFH---------CPNSSTC--------CTMLDGS 696
+C+ RP T LC P+ + C N +TC C G
Sbjct: 771 GACVNRPGT---SSCLCAAGFQGPHCEERTRPSCADNPCRNRATCQDGPQGPHCLCSPGY 827
Query: 697 WGCCPMPQASCCGDKVHCCPHGTSC--DLAHSRCLTVTN-THPMAKIPSQETIKTAV-QC 864
G C K CPH + C +CL + T P+ +P K A+ Q
Sbjct: 828 TGGTCQTLMDLCAQKP--CPHNSYCLQTGPSFQCLCLQGWTGPLCNLPLSFCQKAALSQG 885
Query: 865 PDAESQCHNNSTCCKLSSGKYGCCPLP-NATCCSDHIHCC--------------PHGFVC 999
A S C N C S + CP + C D ++ C P+G++C
Sbjct: 886 TAASSLCQNGGLCIDSGSSYFCHCPPGFQGSTCQDRVNPCESRPCQHGATCIAQPNGYLC 945
Query: 1000 DPVK----KKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCP- 1164
+ C SKE+ A C ++ C + TC G + CP
Sbjct: 946 QCAPGYNGQNC-SKESNA----------------CQSQ-PCHNHGTCTPKPGGYYCTCPP 987
Query: 1165 -FVQAVCCNDHVHCC-----PTG 1215
FV C D C PTG
Sbjct: 988 GFVGLRCEGDVDECLDRPCHPTG 1010
>ref|XP_535946.2| PREDICTED: similar to Low-density lipoprotein receptor-related
protein 2 precursor (Megalin) (Glycoprotein 330) (gp330)
[Canis familiaris].
Length = 4646
Score = 49.3 bits (116), Expect = 8e-06
Identities = 73/284 (25%), Positives = 99/284 (34%), Gaps = 54/284 (19%)
Frame = +1
Query: 538 DGLHC-CPQGFHC--SADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM---LDGSW 699
+G C CP FH D CL R C ++QF C NS C + DG
Sbjct: 3483 NGFTCECPDDFHTLRMGDMNICLPR----------CSSTQFLCANSEKCIPIWWKCDGQR 3532
Query: 700 GC---------CPM----------PQASCCGDKVHC-----CPHGTSCD---LAHSRCLT 798
C CP +C C CP G+ D H RC
Sbjct: 3533 DCSDGSDEPVLCPQRYCRLGQFQCKDGNCTSSHFLCNAHQDCPDGSDEDQILCEHHRC-- 3590
Query: 799 VTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCP---LPNATCCSDH 969
+N A ++ I A +C D+E+ C +NS Y C P C+++
Sbjct: 3591 ESNEWQCA---NKRCIPEAWRC-DSENDCGDNS-----DEDVYNCASRICQPGYFKCANN 3641
Query: 970 IHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCD--TKVSCPDDYTC----- 1128
HC P + CD V C +E P +CD T+ SC +Y C
Sbjct: 3642 -HCIPQDWKCD-VDNDCGDYSDE--------PMPECMSHRCDNHTEFSCRTNYRCIPQWS 3691
Query: 1129 -------CRLQSGKWGC----CPFVQAVCCNDHVHCCPTGYQCN 1227
CR S + GC C CN+H C P ++C+
Sbjct: 3692 VCNGFDDCRDNSDEQGCEERTCKPSGEFRCNNH-RCIPLRWRCD 3734
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,995,945
Number of extensions: 1735079
Number of successful extensions: 8194
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7953
Number of HSP's successfully gapped: 12
Length of query: 449
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 343
Effective length of database: 15,340,888
Effective search space: 5261924584
Effective search space used: 5261924584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002078.1| granulins precursor [Homo sapiens]. 578 e-165
Alignment gi|NP_941965.2| keratin-associated protein 10-11 [Homo sapiens]. 61 3e-09
Alignment gi|NP_941964.2| keratin-associated protein 10-1 [Homo sapiens]. 59 1e-08
Alignment gi|NP_115822.1| multiple epidermal growth factor-like domains p... 58 2e-08
Alignment gi|NP_061027.2| low-density lipoprotein receptor-related protei... 55 1e-07
Alignment gi|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens]. 54 3e-07
Alignment gi|NP_004516.2| low-density lipoprotein receptor-related protei... 54 4e-07
Alignment gi|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens]. 52 1e-06
Alignment gi|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens]. 52 1e-06
Alignment gi|NP_115823.3| fibrillin-3 precursor [Homo sapiens]. 51 2e-06
>ref|NP_002078.1| granulins precursor [Homo sapiens].
Length = 593
Score = 578 bits (1490), Expect = e-165
Identities = 243/369 (65%), Positives = 282/369 (76%), Gaps = 6/369 (1%)
Frame = +1
Query: 259 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 438
MWTLVSWVAL GLVAGT+CPDGQ CPVACCLDPGGASYSCC P+ DKWP LS+HLG P
Sbjct: 1 MWTLVSWVALTAGLVAGTRCPDGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGP 60
Query: 439 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 618
C+ A C GHSCI T + TS+CCPFPEAV+C DG HCCP+GFHCSADG SC +R
Sbjct: 61 CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNS 120
Query: 619 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 798
I CP+SQF CP+ STCC M+DGSWGCCPMPQASCC D+VHCCPHG CDL H+RC+T
Sbjct: 121 VGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCIT 180
Query: 799 VTNTHPMA-KIPSQET-----IKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 960
T THP+A K+P+Q T + ++V CPDA S+C + STCC+L SGKYGCCP+PNATCC
Sbjct: 181 PTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCC 240
Query: 961 SDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQ 1140
SDH+HCCP VCD ++ KC SKEN D TKLPAH+V +VKCD +VSCPD YTCCRLQ
Sbjct: 241 SDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQ 300
Query: 1141 SGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLXPAELLAS 1320
SG WGCCPF QAVCC DH+HCCP G+ C+ +KGTC+ VPW E+ P L + A
Sbjct: 301 SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQAL 360
Query: 1321 GKDVPCDNV 1347
+DVPCDNV
Sbjct: 361 KRDVPCDNV 369
Score = 255 bits (651), Expect = 8e-68
Identities = 132/376 (35%), Positives = 178/376 (47%), Gaps = 35/376 (9%)
Frame = +1
Query: 316 CPDGQLCPVAC--CLDPGGASYSCCNPVPDKWP-----KALSQHLGVPCK-TKAQCPPGH 471
CP G C + C+ P G +P+ K P +A++ V C +++CP G
Sbjct: 165 CPHGAFCDLVHTRCITPTGT-----HPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGS 219
Query: 472 SCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPS---------- 621
+C + CCP P A C D LHCCPQ C CL + +
Sbjct: 220 TCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTV 279
Query: 622 DDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTV 801
D+ C + + CP+ TCC + G+WGCCP QA CC D +HCCP G +CD C
Sbjct: 280 GDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQG 338
Query: 802 TNTHPMAK-------IPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 960
+ P + +P + +K V C D S C ++ TCC+L+SG++GCCP+P A CC
Sbjct: 339 PHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCC 397
Query: 961 SDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSV-----QEVKCDTKVSCPDDYT 1125
SDH HCCP G+ C V + + +E + K+PA +++ CD SCP T
Sbjct: 398 SDHQHCCPQGYTC--VAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQT 455
Query: 1126 CCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLXPA 1305
CC G W CC AVCC D HCCP GY CN+K +C+ E S PA
Sbjct: 456 CCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEV----------VSAQPA 505
Query: 1306 ELLASG-----KDVPC 1338
LA KDV C
Sbjct: 506 TFLARSPHVGVKDVEC 521
Score = 232 bits (592), Expect = 5e-61
Identities = 121/368 (32%), Positives = 164/368 (44%), Gaps = 54/368 (14%)
Frame = +1
Query: 304 AGTQCPDGQLC------PVACCLDPGGASYS----CC-----------------NPVPDK 402
A ++CPDG C CC P S CC N D
Sbjct: 211 ARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDL 270
Query: 403 WPKALSQHLG-VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSA 579
K + +G V C + CP G++C + CCPF +AV C D +HCCP GF C
Sbjct: 271 LTKLPAHTVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDT 330
Query: 580 DGWSCLRRPDTKP-----------------SDDILCPNSQFHCPNSSTCCTMLDGSWGCC 708
+C + P P D+ C N CP+S TCC + G WGCC
Sbjct: 331 QKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVS-SCPSSDTCCQLTSGEWGCC 389
Query: 709 PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTN-THPMAKIPSQETIKTA---VQCPDAE 876
P+P+A CC D HCCP G +C +A +C + + K+P++ + + C D
Sbjct: 390 PIPEAVCCSDHQHCCPQGYTC-VAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQH 447
Query: 877 SQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAID--- 1047
+ C TCC G + CC LP+A CC D HCCP G+ C+ + C E E +
Sbjct: 448 TSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSC---EKEVVSAQP 504
Query: 1048 --FFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQ 1221
F + P V++V+C C D+ TCCR W CCP+ Q VCC D HCCP G++
Sbjct: 505 ATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFR 564
Query: 1222 CNIKKGTC 1245
C + C
Sbjct: 565 CAARGTKC 572
Score = 167 bits (423), Expect = 2e-41
Identities = 99/304 (32%), Positives = 126/304 (41%), Gaps = 53/304 (17%)
Frame = +1
Query: 316 CPDGQLC--------------PVACCLD-----PGGASYSC------CNPVPDK--WPKA 414
CPDG C CC D P G ++C C P + W +
Sbjct: 290 CPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAG--FTCDTQKGTCEQGPHQVPWMEK 347
Query: 415 LSQHLG----------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQG 564
HL VPC + CP +C T+ CCP PEAV C D HCCPQG
Sbjct: 348 APAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQG 407
Query: 565 FHCSADGWSC--------------LRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWG 702
+ C A+G C RR DI C + CP TCC L GSW
Sbjct: 408 YTCVAEG-QCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWA 465
Query: 703 CCPMPQASCCGDKVHCCPHGTSCDLAHSRC-LTVTNTHPMAKIPSQETIKTA-VQCPDAE 876
CC +P A CC D+ HCCP G +C++ C V + P + + V+C +
Sbjct: 466 CCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGH 525
Query: 877 SQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFT 1056
CH+N TCC+ + + CCP CC+D HCCP GF C KC +E D
Sbjct: 526 F-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPL 584
Query: 1057 KLPA 1068
+ PA
Sbjct: 585 RDPA 588
>ref|NP_941965.2| keratin-associated protein 10-11 [Homo sapiens].
Length = 298
Score = 60.8 bits (146), Expect = 3e-09
Identities = 77/306 (25%), Positives = 104/306 (33%), Gaps = 9/306 (2%)
Frame = +1
Query: 334 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCP 513
CP +CC P A SCC P P C P SC+ +S CC
Sbjct: 22 CPESCCEPPCSAP-SCCAPAPS---------------LSLVCTPV-SCV-----SSPCCQ 59
Query: 514 FP-EAVSCRDGL--HCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM 684
E +C+ G C P SC ++ +P+ P Q C CC
Sbjct: 60 AACEPSACQSGCTSSCTP----------SCCQQSSCQPACCTSSPCQQACCV--PVCCKT 107
Query: 685 LDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQ 861
+ CC CCG CC +SC A C ++ P +P + +
Sbjct: 108 VCCKPVCCV---PVCCGAASSCCRQ-SSCQPA---CCASSSCQPACCVPVCCKPVCCVST 160
Query: 862 CPDAESQCHNNSTC----CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSK 1029
C + S C S+C C SS + CC CC ++C P C PV + S
Sbjct: 161 CSEDSSSCCQQSSCQPACCTSSSYQQACCV---PVCCKT-VYCKP--ICCVPVCSRASS- 213
Query: 1030 ENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSG-KWGCCPFVQAVCCNDHVHCC 1206
++ S Q C T +CCR S C P ++ CC CC
Sbjct: 214 --------SRCQQPSCQPACCTT--------SCCRPSSSVSLLCHPVCRSTCCVPVSSCC 257
Query: 1207 PTGYQC 1224
C
Sbjct: 258 APTSSC 263
>ref|NP_941964.2| keratin-associated protein 10-1 [Homo sapiens].
Length = 282
Score = 58.5 bits (140), Expect = 1e-08
Identities = 80/330 (24%), Positives = 108/330 (32%), Gaps = 15/330 (4%)
Frame = +1
Query: 280 VALVTGLVAGTQCPDG---QLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTK 450
+A T V + C D CP +CC +P + SCC P P C T
Sbjct: 1 MAASTMSVCSSACSDSWQVDACPESCC-EPHCCALSCCAPAP--------------CLTL 45
Query: 451 AQCPPGHSCILTTNETSNCCPFP-EAVSCRDGL--HCCPQGFHCSADGWSCLRRPDTKPS 621
C + +S CC E C+ G C P SC ++ +P+
Sbjct: 46 V-------CTPVSRVSSPCCQAACEPSPCQSGCTSSCTP----------SCCQQSSCQPA 88
Query: 622 DDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHG----TSCDLAHSR 789
C +S P CC + CC +P +C D CC T C + S+
Sbjct: 89 ---CCTSS----PCQQACCVPVCCKPVCC-LP--TCSKDSSSCCQQSSCQPTCCASSSSQ 138
Query: 790 --CLTVTNTHPMAKIPS-QETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCC-PLPNATC 957
C P+ +P+ E + Q +S CH CC S + CC P+
Sbjct: 139 QSCCVPVCCKPVCYVPTCSEDSSSCCQ----QSSCH--PACCTSSPCQQACCVPVRCKPV 192
Query: 958 CSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRL 1137
C I C P VC C + S Q C T +CCR
Sbjct: 193 CCKPICCVP---VCSGASTSCCQQS-------------SCQPACCTT--------SCCRP 228
Query: 1138 QSG-KWGCCPFVQAVCCNDHVHCCPTGYQC 1224
S C P + CC CC C
Sbjct: 229 SSSVSLLCRPVCRPACCMPVSSCCAPASSC 258
>ref|NP_115822.1| multiple epidermal growth factor-like domains protein 10 precursor
[Homo sapiens].
Length = 1140
Score = 58.2 bits (139), Expect = 2e-08
Identities = 82/352 (23%), Positives = 118/352 (33%), Gaps = 41/352 (11%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC G C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCTSRCQCKNGALC---- 160
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD--TKPSDDILCPNSQFHCPN 663
N + C C GF GW C R + T +D C + + C N
Sbjct: 161 NPITGACH-------------CAAGFR----GWRCEDRCEQGTYGND---C-HQRCQCQN 199
Query: 664 SSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM---AKIPS 834
+T C + G C P + C D HG C+ C H + PS
Sbjct: 200 GAT-CDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCE-QRCPCQNGGVCHHVTGECSCPS 257
Query: 835 QETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH------ 969
Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 258 GWMGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVGTY 316
Query: 970 -IHC-----CPHGFVCDPVKKKCFSKENEAID-FFTKLPAHSVQEVKCDTKVSCPDDYT- 1125
+ C C +G C V C + A + +L + +KCD + C + T
Sbjct: 317 GVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTH 376
Query: 1126 CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
C SG+ C P + CN+ + C G C+ G C
Sbjct: 377 SCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKC 428
Score = 55.5 bits (132), Expect = 1e-07
Identities = 101/397 (25%), Positives = 124/397 (31%), Gaps = 72/397 (18%)
Frame = +1
Query: 313 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
QC +G LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 153 QCKNGALCNPITGACHCAAGFRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 205
Query: 484 TTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK--------------PS 621
T E C P C D CP G H G C +R + PS
Sbjct: 206 VTGEC-RCPPGYTGAFCED---LCPPGKH----GPQCEQRCPCQNGGVCHHVTGECSCPS 257
Query: 622 DDI------LCPNSQF--------HCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPH 759
+ CP +F C N TC G C P C D+ CP
Sbjct: 258 GWMGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAATGQCHCSPGYTGERCQDE---CPV 313
Query: 760 GTSCDLAHSRCLTVTNT---HPMAKIPSQETIK----TAVQCP--------DAESQCH-N 891
GT L C V H + A CP D CH
Sbjct: 314 GTYGVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLE 373
Query: 892 NSTCCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSKEN 1035
N+ C SG+ C P N TC I C +G CD V KC
Sbjct: 374 NTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTCAPG 433
Query: 1036 -EAIDFFTKLPAHSVQEVKCDTKVSCPDDYTC------CRLQSGKWGC-----CPF-VQA 1176
+ ID T P + C ++ C +D C C ++G G CP
Sbjct: 434 FKGIDCSTPCPL-GTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWG 492
Query: 1177 VCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENP 1287
CN C G CN GTC W K E P
Sbjct: 493 FGCNLTCQCL-NGGACNTLDGTCTCAPGWRGEKCELP 528
>ref|NP_061027.2| low-density lipoprotein receptor-related protein 1B precursor [Homo
sapiens].
Length = 4599
Score = 55.5 bits (132), Expect = 1e-07
Identities = 79/325 (24%), Positives = 111/325 (34%), Gaps = 60/325 (18%)
Frame = +1
Query: 457 CPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDIL- 633
C + C +E++ C A +C+ C G C W C R D D +
Sbjct: 905 CDGANDCGSNEDESNQTCT---ARTCQVDQFSCGNG-RCIPRAWLCDREDDCGDQTDEMA 960
Query: 634 -------------------CPNSQFHCPNSSTCCTMLDGS--WGC---CPMPQASCCGDK 741
C +S++HC + C DGS GC C Q C +
Sbjct: 961 SCEFPTCEPLTQFVCKSGRCISSKWHCDSDDDCG---DGSDEVGCVHSCFDNQFRCSSGR 1017
Query: 742 VHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQCPDAESQCHNNSTC----- 903
C P +CD + C ++ A+I ++E I + C E QCH + C
Sbjct: 1018 --CIPGHWACD-GDNDCGDFSDE---AQINCTKEEIHSPAGCNGNEFQCHPDGNCVPDLW 1071
Query: 904 -------CKLSSGKYGC------CPLPNATCCSDHIHCCPHGFVCD-PVKKKCFSKENEA 1041
C+ S + GC C C C +VCD + + S E++
Sbjct: 1072 RCDGEKDCEDGSDEKGCNGTIRLCDHKTKFSCWSTGRCINKAWVCDGDIDCEDQSDEDDC 1131
Query: 1042 IDFFTKLPAHSVQ---------EVKCDTKVSCPDD----YTC--CRLQSGKWGCCPFVQA 1176
F P H E C+ K CPD Y C C L +G GC
Sbjct: 1132 DSFLCGPPKHPCANDTSVCLQPEKLCNGKKDCPDGSDEGYLCDECSLNNG--GCSNHCSV 1189
Query: 1177 VCCNDHVHCCPTGYQCNIKKGTCDL 1251
V V CP G Q N TC++
Sbjct: 1190 VPGRGIVCSCPEGLQLNKDNKTCEI 1214
>ref|NP_941962.1| keratin-associated protein 10-7 [Homo sapiens].
Length = 370
Score = 54.3 bits (129), Expect = 3e-07
Identities = 66/257 (25%), Positives = 92/257 (35%), Gaps = 25/257 (9%)
Frame = +1
Query: 550 CCPQGFHCSADGW-------SCLRRPDTKPSD--DILCPNSQFHCPNSSTCCTMLDGSWG 702
C P +D W SC P P+ ++C + SS CC +
Sbjct: 20 CLPGSCDSCSDSWQVDDCPESCCEPPCCAPAPCLSLVCTPVSYV---SSPCCRVT----- 71
Query: 703 CCPMP-QASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAES 879
C P P Q+ C C +SC LA C A P Q+ V C
Sbjct: 72 CEPSPCQSGCTSSCTPSCCQQSSCQLA---CC--------ASSPCQQACCVPVCCKTVCC 120
Query: 880 Q-------CHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDPVKKKCFSKEN 1035
+ C +S+CC+ SS + CC P C I C P VC + C +++
Sbjct: 121 KPVYCVPVCSGDSSCCQQSSCQSACCTSSPCQQACCVPICCKP---VCSGISSSC-CQQS 176
Query: 1036 EAIDFFTKLPAHSVQEVK-CDTKVSCPDDYTCCRLQSGKWGCC---PFVQAVC---CNDH 1194
+ + +V E C + +CC+ S K CC P QA C C
Sbjct: 177 SCVSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSSCKPACCTSSPCQQACCVPVCCKP 236
Query: 1195 VHCCPTGYQCNIKKGTC 1245
V C PT C+ G+C
Sbjct: 237 VCCVPT---CSDDSGSC 250
>ref|NP_004516.2| low-density lipoprotein receptor-related protein 2 precursor [Homo
sapiens].
Length = 4655
Score = 53.5 bits (127), Expect = 4e-07
Identities = 70/294 (23%), Positives = 93/294 (31%), Gaps = 30/294 (10%)
Frame = +1
Query: 454 QCPPGHSCILTTNETS---NCCPFPEAVSC--RDGLHCCPQGFHCSADG------WSCLR 600
+C G CI TN +C + C R C F C DG W C
Sbjct: 1193 KCASGDKCIGVTNRCDGVFDCSDNSDEAGCPTRPPGMCHSDEFQCQEDGICIPNFWECDG 1252
Query: 601 RPDTKPSDDI-------LCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVH--CC 753
PD D CP+S FHC N + + +W C + + CGD C
Sbjct: 1253 HPDCLYGSDEHNACVPKTCPSSYFHCDNGNC----IHRAWLC---DRDNDCGDMSDEKDC 1305
Query: 754 PHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLS---SGK 924
P T P +CP + QC ++ C LS G
Sbjct: 1306 P-----------------TQPF-------------RCPSWQWQCLGHNICVNLSVVCDGI 1335
Query: 925 YGC------CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEV 1086
+ C PL N CSD C H V +P KC + F + + +++
Sbjct: 1336 FDCPNGTDESPLCNGNSCSDFNGGCTHECVQEPFGAKCLC----PLGFLLANDSKTCEDI 1391
Query: 1087 -KCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTC 1245
+CD SC C G + C C TGY TC
Sbjct: 1392 DECDILGSCSQH---CYNMRGSFRC--------------SCDTGYMLESDGRTC 1428
>ref|NP_941961.2| keratin-associated protein 10-6 [Homo sapiens].
Length = 365
Score = 52.0 bits (123), Expect = 1e-06
Identities = 75/298 (25%), Positives = 104/298 (34%), Gaps = 14/298 (4%)
Frame = +1
Query: 334 CPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCP 513
CP +CC P A C + V + S V C+ + C G T++ T +CC
Sbjct: 37 CPESCCEPPCCAPAPCLSLVCTPVSRVSSPCCPVTCE-PSPCQSG----CTSSCTPSCC- 90
Query: 514 FPEAVSCRDGLHCC---PQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTM 684
+ SC+ L CC P C C + KP + C + C S+CC
Sbjct: 91 --QQSSCQ--LACCASSPCQQACCVP--VCCKTVCCKP---VCCVSV---CCGDSSCCQQ 138
Query: 685 LDGSWGCC---PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTA 855
CC P QA C V C P C S C ++ P + +
Sbjct: 139 SSCQSACCTSSPCQQACCV--PVCCKP---VCSGISSSCCQQSSCVSCVSSPCCQAVCEP 193
Query: 856 VQCPDAESQCHNNST--CCKLSSGKYGCC---PLPNATC---CSDHIHCCPHGFVCDPVK 1011
C +S C ++ T CC+ SS + CC P A C C + C P C
Sbjct: 194 SPC---QSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP---TCSEDS 247
Query: 1012 KKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCC 1185
C + + T P C V +CC+ S + CC A CC
Sbjct: 248 SSCCQQSSCQPACCTSSPCQHA----CCVPVCSGASTSCCQQSSCQPACC---TASCC 298
Score = 50.8 bits (120), Expect = 3e-06
Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 20/260 (7%)
Frame = +1
Query: 550 CCPQGFHCSADGW-------SCLRRPDTKPSD--DILC-PNSQFHCPNSSTCCTMLDGSW 699
C P +D W SC P P+ ++C P S+ SS CC +
Sbjct: 20 CLPGSCDSCSDSWQVDDCPESCCEPPCCAPAPCLSLVCTPVSRV----SSPCCPVT---- 71
Query: 700 GCCPMP-QASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP-SQETIKTAVQCPDA 873
C P P Q+ C C +SC LA C + +P +T+ C
Sbjct: 72 -CEPSPCQSGCTSSCTPSCCQQSSCQLA---CCASSPCQQACCVPVCCKTVCCKPVC--C 125
Query: 874 ESQCHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDF 1050
S C +S+CC+ SS + CC P C + C P VC + C +++ +
Sbjct: 126 VSVCCGDSSCCQQSSCQSACCTSSPCQQACCVPVCCKP---VCSGISSSC-CQQSSCVSC 181
Query: 1051 FTKLPAHSVQEVK-CDTKVSCPDDYTCCRLQSGKWGCC---PFVQAVC---CNDHVHCCP 1209
+ +V E C + + +CC+ S + CC P QA C C V C P
Sbjct: 182 VSSPCCQAVCEPSPCQSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP 241
Query: 1210 TGYQCNIKKGTCDLETQWVP 1269
T C+ +C ++ P
Sbjct: 242 T---CSEDSSSCCQQSSCQP 258
Score = 49.7 bits (117), Expect = 6e-06
Identities = 64/257 (24%), Positives = 85/257 (33%), Gaps = 27/257 (10%)
Frame = +1
Query: 316 CPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNE 495
C C ACC+ P CC PV C C C ++ +
Sbjct: 99 CCASSPCQQACCV-PVCCKTVCCKPV---------------CCVSVCCGDSSCCQQSSCQ 142
Query: 496 TSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD-----TKPSDDILCPNS--QFH 654
++ C P +C + C P CS SC ++ + P +C S Q
Sbjct: 143 SACCTSSPCQQACCVPVCCKPV---CSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQSG 199
Query: 655 CPNSST--CCTMLDGSWGCC---PMPQASC---CGDKVHCCPHGTSCDLAHSRCLTVTNT 810
C +S T CC CC P QA C C V C P +C S C ++
Sbjct: 200 CTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVCCVPVCCVP---TCSEDSSSCCQQSSC 256
Query: 811 HPMA--KIPSQETIKTAVQCPDAESQCHNNSTC---------CKLSSG-KYGCCPLPNAT 954
P P Q V C A + C S+C C+ SS C P+ +T
Sbjct: 257 QPACCTSSPCQHACCVPV-CSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKST 315
Query: 955 CCSDHIHCCPHGFVCDP 1005
CC C C P
Sbjct: 316 CCVPVPSCGASASSCQP 332
>ref|NP_941960.1| keratin-associated protein 10-4 [Homo sapiens].
Length = 401
Score = 52.0 bits (123), Expect = 1e-06
Identities = 64/260 (24%), Positives = 86/260 (33%), Gaps = 28/260 (10%)
Frame = +1
Query: 310 TQCPDGQLCPVACCLDP--GGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPG----- 468
T P Q C V C P G S SCC + + PC +A C P
Sbjct: 147 TSSPCQQACCVPICCKPVCSGISSSCCQQ------SSCVSCVSSPC-CQAVCEPSPCQSG 199
Query: 469 --HSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFH-------CSADGWSCLRRPDTKPS 621
SC + + S+C P S C P CS D SC ++ +P+
Sbjct: 200 CISSCTPSCCQQSSCQPACCTSSSCQQACCVPVCCKTVCCKPVCSEDSSSCCQQSSCQPA 259
Query: 622 DDILCPNSQFHCPNSSTCCTMLDGSWGCC-PMPQASCCGDKVHCCPHGTSCDLAHSRCLT 798
C +S P CC + CC P+ C C +SC A C T
Sbjct: 260 ---CCTSS----PCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQSSCQPA---CCT 309
Query: 799 VTNTHPMAKIP-SQETIKTAVQCPDAESQCHNNSTC---------CKLSSG-KYGCCPLP 945
+ + +P + + C A S C S+C C+ SS C P+
Sbjct: 310 SSQSQQGCCVPVCCKPVSCVPVCSGASSSCCQQSSCQPACCTTSCCRPSSSVSLLCRPVC 369
Query: 946 NATCCSDHIHCCPHGFVCDP 1005
CC CC C P
Sbjct: 370 RPACCVPVPSCCAPTSSCQP 389
Score = 50.4 bits (119), Expect = 4e-06
Identities = 81/342 (23%), Positives = 110/342 (32%), Gaps = 30/342 (8%)
Frame = +1
Query: 334 CPVACCLDPGGASYSCCNPVPDKWPKALS------QHLGVPCKTKAQCPPGHSCILTTNE 495
CP +CC +P + SCC P P LS + PC P T++
Sbjct: 32 CPESCC-EPPCCAPSCCAPAP-----CLSLVCTPVSRVSSPCCPVTCEPSPCQSGCTSSC 85
Query: 496 TSNCCPFPEAVSCRDGLHCC---PQGFHCSADGWSCLRRPDTKPSDDI-LCPNSQFHCPN 663
T +CC + SC+ L CC P C C + KP + +C C
Sbjct: 86 TPSCC---QQSSCQ--LACCASSPCQQACCVP--VCCKTVCCKPVCCVPVCCGDSSCCQQ 138
Query: 664 S---STCCTMLDGSWGCCPMP---QASCCGDKVHCCPHGTSCDLAHSRCL-TVTNTHPMA 822
S S CCT CC +P + C G CC + S C V P
Sbjct: 139 SSCQSACCTSSPCQQACC-VPICCKPVCSGISSSCCQQSSCVSCVSSPCCQAVCEPSPCQ 197
Query: 823 KIPSQETIKTAVQCPDAESQCHNNST----CCKLSSGKYGCCPLPNATCCSDHIHCC--- 981
+ Q + C +S+ CC K CC C D CC
Sbjct: 198 SGCISSCTPSCCQQSSCQPACCTSSSCQQACCVPVCCKTVCC---KPVCSEDSSSCCQQS 254
Query: 982 ---PHGFVCDPVKKKC---FSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQS 1143
P P ++ C + +P S C + SC CC
Sbjct: 255 SCQPACCTSSPCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQSSCQP--ACCTSSQ 312
Query: 1144 GKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVP 1269
+ GCC VCC V C P C+ +C ++ P
Sbjct: 313 SQQGCC---VPVCCKP-VSCVPV---CSGASSSCCQQSSCQP 347
>ref|NP_115823.3| fibrillin-3 precursor [Homo sapiens].
Length = 2809
Score = 51.2 bits (121), Expect = 2e-06
Identities = 75/307 (24%), Positives = 95/307 (30%), Gaps = 43/307 (14%)
Frame = +1
Query: 448 KAQCPPGHSCILTTNETS-----------NCCPFPEAVSCRDGLHC-CPQGFHCSADGWS 591
K QCPPGH LT T+ CP + V+ C C GF + D
Sbjct: 1095 KCQCPPGHE--LTAKGTACEDIDECSLSDGLCPHGQCVNVIGAFQCSCHAGFQSTPDRQG 1152
Query: 592 CLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSC 771
C+ + + + HC N+ G G MP C D C + C
Sbjct: 1153 CVDINECRVQNG----GCDVHCINTEGSYRCSCGQ-GYSLMPDGRACADVDECEENPRVC 1207
Query: 772 DLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-C 936
D H C + H C D + N C C+ + G + C C
Sbjct: 1208 DQGH--CTNMPGGHRCLCYDGFMATPDMRTCVDVDECDLNPHICLHGDCENTKGSFVCHC 1265
Query: 937 PL-----PNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAH 1071
L AT CSD C G CD P C D F L
Sbjct: 1266 QLGYMVRKGATGCSDVDECEVGGHNCDSHASCLNIPGSFSCRCLPGWVGDGFECHDLDEC 1325
Query: 1072 SVQEVKCDTKVSC---PDDYTC-CRLQSGKWGC-------CPFVQAVCCNDHVHCCPTGY 1218
QE +C + C P Y C CR G C +C N P GY
Sbjct: 1326 VSQEHRCSPRGDCLNVPGSYRCTCRQGFAGDGFFCEDRDECAENVDLCDNGQCLNAPGGY 1385
Query: 1219 QCNIKKG 1239
+C + G
Sbjct: 1386 RCECEMG 1392
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,106,716
Number of extensions: 1724326
Number of successful extensions: 8552
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8144
Number of HSP's successfully gapped: 22
Length of query: 449
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 343
Effective length of database: 14,802,980
Effective search space: 5077422140
Effective search space used: 5077422140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032201.2| granulins [Mus musculus]. 537 e-153
Alignment gi|NP_001001979.1| multiple epidermal growth factor-like domain... 61 2e-09
Alignment gi|NP_001156449.1| multiple epidermal growth factor-like domain... 59 9e-09
Alignment gi|NP_001078996.1| keratin-associated protein 9-1 [Mus musculus]. 55 2e-07
Alignment gi|NP_079689.2| RIKEN cDNA 1110058A15 [Mus musculus]. 53 5e-07
Alignment gi|NP_032600.2| sperm mitochondrial-associated cysteine-rich pr... 51 2e-06
Alignment gi|NP_001004157.2| scavenger receptor class F member 1 [Mus mus... 51 2e-06
Alignment gi|NP_080670.2| late cornified envelope 1F [Mus musculus]. 50 3e-06
Alignment gi|NP_082898.1| late cornified envelope 1C [Mus musculus]. 50 3e-06
Alignment gi|NP_081098.1| late cornified envelope 1B [Mus musculus]. 50 4e-06
>ref|NP_032201.2| granulins [Mus musculus].
Length = 602
Score = 537 bits (1383), Expect = e-153
Identities = 227/376 (60%), Positives = 279/376 (74%), Gaps = 8/376 (2%)
Frame = +1
Query: 241 PRRRWTMWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALS 420
PRRR TMW L+SW+A GLVAGTQCPDGQ CPVACCLD GGA+YSCCNP+ D WP+ S
Sbjct: 8 PRRRQTMWVLMSWLAFAAGLVAGTQCPDGQFCPVACCLDQGGANYSCCNPLLDTWPRITS 67
Query: 421 QHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLR 600
HL C+T CP G+SC+LT + TS+CCPF + VSC DG HCCPQGFHCSADG SC +
Sbjct: 68 HHLDGSCQTHGHCPAGYSCLLTVSGTSSCCPFSKGVSCGDGYHCCPQGFHCSADGKSCFQ 127
Query: 601 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 780
D P + CP SQF CP+S+TCC M+DGSWGCCPMPQASCC D+VHCCPHG SCDL
Sbjct: 128 MSD-NPLGAVQCPGSQFECPDSATCCIMVDGSWGCCPMPQASCCEDRVHCCPHGASCDLV 186
Query: 781 HSRCLTVTNTHP-MAKIPSQET-----IKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPL 942
H+RC++ T TH + K P+Q+T + +V CPDA++QC ++STCC+L +GKYGCCP+
Sbjct: 187 HTRCVSPTGTHTLLKKFPAQKTNRAVSLPFSVVCPDAKTQCPDDSTCCELPTGKYGCCPM 246
Query: 943 PNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDY 1122
PNA CCSDH+HCCP VCD ++ KC SK N D TKLP + V+EVKCD +VSCP+ Y
Sbjct: 247 PNAICCSDHLHCCPQDTVCDLIQSKCLSK-NYTTDLLTKLPGYPVKEVKCDMEVSCPEGY 305
Query: 1123 TCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEE--NPXSL 1296
TCCRL +G WGCCPF +AVCC DH+HCCP G+QC+ +KGTC++ VPW ++ P L
Sbjct: 306 TCCRLNTGAWGCCPFAKAVCCEDHIHCCPAGFQCHTEKGTCEMGILQVPWMKKVIAPLRL 365
Query: 1297 XPAELLASGKDVPCDN 1344
++L S D PCD+
Sbjct: 366 PDPQILKS--DTPCDD 379
Score = 250 bits (638), Expect = 2e-66
Identities = 122/341 (35%), Positives = 161/341 (47%), Gaps = 24/341 (7%)
Frame = +1
Query: 316 CPDGQLCPVAC--CLDPGGASYSCCNPVPDKWPKALSQHLGVPCK-TKAQCPPGHSCILT 486
CP G C + C+ P G K +A+S V C K QCP +C
Sbjct: 177 CPHGASCDLVHTRCVSPTGTHTLLKKFPAQKTNRAVSLPFSVVCPDAKTQCPDDSTCCEL 236
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK---------PSDDILCP 639
CCP P A+ C D LHCCPQ C CL + T P ++ C
Sbjct: 237 PTGKYGCCPMPNAICCSDHLHCCPQDTVCDLIQSKCLSKNYTTDLLTKLPGYPVKEVKC- 295
Query: 640 NSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPM 819
+ + CP TCC + G+WGCCP +A CC D +HCCP G C C P
Sbjct: 296 DMEVSCPEGYTCCRLNTGAWGCCPFAKAVCCEDHIHCCPAGFQCHTEKGTCEMGILQVPW 355
Query: 820 AK-------IPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 978
K +P + +K+ C D ++C N+TCCKL+SG +GCCP+P A CCSD+ HC
Sbjct: 356 MKKVIAPLRLPDPQILKSDTPCDDF-TRCPTNNTCCKLNSGDWGCCPIPEAVCCSDNQHC 414
Query: 979 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHS-----VQEVKCDTKVSCPDDYTCCRLQS 1143
CP GF C + + K + + K+PA + ++ CD SCP TCC
Sbjct: 415 CPQGFTC--LAQGYCQKGDTMVAGLEKIPARQTTPLQIGDIGCDQHTSCPVGQTCCPSLK 472
Query: 1144 GKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWV 1266
G W CC AVCC D HCCP GY CN+K TC+ + ++
Sbjct: 473 GSWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKDVDFI 513
Score = 227 bits (579), Expect = 1e-59
Identities = 127/374 (33%), Positives = 168/374 (44%), Gaps = 60/374 (16%)
Frame = +1
Query: 304 AGTQCPDGQLCPVACCLDPGGASYSCCNPVPDK-------------------WPKALSQH 426
A TQCPD CC P G Y CC P+P+ K LS++
Sbjct: 223 AKTQCPDDS----TCCELPTG-KYGCC-PMPNAICCSDHLHCCPQDTVCDLIQSKCLSKN 276
Query: 427 LG--------------VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQG 564
V C + CP G++C CCPF +AV C D +HCCP G
Sbjct: 277 YTTDLLTKLPGYPVKEVKCDMEVSCPEGYTCCRLNTGAWGCCPFAKAVCCEDHIHCCPAG 336
Query: 565 FHCSADGWSC----------------LRRPDTK------PSDDILCPNSQFHCPNSSTCC 678
F C + +C LR PD + P DD CP ++TCC
Sbjct: 337 FQCHTEKGTCEMGILQVPWMKKVIAPLRLPDPQILKSDTPCDDFT------RCPTNNTCC 390
Query: 679 TMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTV-TNTHPMAKIPSQETIKTA 855
+ G WGCCP+P+A CC D HCCP G +C LA C T + KIP+++T
Sbjct: 391 KLNSGDWGCCPIPEAVCCSDNQHCCPQGFTC-LAQGYCQKGDTMVAGLEKIPARQTTPLQ 449
Query: 856 VQ---CPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFS 1026
+ C D + C TCC G + CC LP+A CC D HCCP G+ C+ VK +
Sbjct: 450 IGDIGC-DQHTSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTCN-VKARTCE 507
Query: 1027 KENEAIDFFTKLP-AHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHC 1203
K+ + I L V V+C C D+ TCC+ +G W CCP+++ VCC D HC
Sbjct: 508 KDVDFIQPPVLLTLGPKVGNVECGEGHFCHDNQTCCKDSAGVWACCPYLKGVCCRDGRHC 567
Query: 1204 CPTGYQCNIKKGTC 1245
CP G+ C+ + C
Sbjct: 568 CPGGFHCSARGTKC 581
Score = 166 bits (420), Expect = 4e-41
Identities = 84/226 (37%), Positives = 107/226 (47%), Gaps = 16/226 (7%)
Frame = +1
Query: 436 PCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK 615
PC +CP ++C + CCP PEAV C D HCCPQGF C A G+ ++ DT
Sbjct: 376 PCDDFTRCPTNNTCCKLNSGDWGCCPIPEAVCCSDNQHCCPQGFTCLAQGYC--QKGDTM 433
Query: 616 PSD---------------DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHC 750
+ DI C + CP TCC L GSW CC +P A CC D+ HC
Sbjct: 434 VAGLEKIPARQTTPLQIGDIGC-DQHTSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHC 492
Query: 751 CPHGTSCDLAHSRC-LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKY 927
CP G +C++ C V P + + V+C + CH+N TCCK S+G +
Sbjct: 493 CPAGYTCNVKARTCEKDVDFIQPPVLLTLGPKVGN-VECGEGHF-CHDNQTCCKDSAGVW 550
Query: 928 GCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLP 1065
CCP CC D HCCP GF C KC K+ D F + P
Sbjct: 551 ACCPYLKGVCCRDGRHCCPGGFHCSARGTKCLRKKIPRWDMFLRDP 596
Score = 65.9 bits (159), Expect = 7e-11
Identities = 46/129 (35%), Positives = 53/129 (41%), Gaps = 31/129 (24%)
Frame = +1
Query: 310 TQCPDGQLC------PVACCLDPGG-----------ASYSC------CNPVPDKWPKALS 420
T CP GQ C ACC P A Y+C C D +
Sbjct: 459 TSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKDVDFIQPPVL 518
Query: 421 QHLGVPCKTKAQCPPGHSCILTTNETS--------NCCPFPEAVSCRDGLHCCPQGFHCS 576
LG P +C GH C N+T CCP+ + V CRDG HCCP GFHCS
Sbjct: 519 LTLG-PKVGNVECGEGHFC--HDNQTCCKDSAGVWACCPYLKGVCCRDGRHCCPGGFHCS 575
Query: 577 ADGWSCLRR 603
A G CLR+
Sbjct: 576 ARGTKCLRK 584
>ref|NP_001001979.1| multiple epidermal growth factor-like domains protein 10 precursor
[Mus musculus].
Length = 1147
Score = 61.2 bits (147), Expect = 2e-09
Identities = 82/354 (23%), Positives = 119/354 (33%), Gaps = 43/354 (12%)
Frame = +1
Query: 313 QCPDGQ-LCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
+C G+ + P C +PG +C + H G C ++ QC C
Sbjct: 112 KCVHGRCIAPNTCQCEPGWGGTNCSSACD-------GDHWGPHCSSRCQCKNRALC---- 160
Query: 490 NETSNCCPFPEAVSCRDGLHCCPQGFHCSAD--GWSCLRRPD--TKPSDDILCPNSQFHC 657
N + C HC+A GW C R + T +D C + + C
Sbjct: 161 NPITGAC-------------------HCAAGYRGWRCEDRCEQGTYGND---C-HQRCQC 197
Query: 658 PNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMA---KI 828
N +TC + G C P + C D HG C+ C H +
Sbjct: 198 QNGATC-DHITGECRCSPGYTGAFCEDLCPPGKHGPHCE-QRCPCQNGGVCHHVTGECSC 255
Query: 829 PSQETIKTAVQ-CPDA--------ESQCHNNSTCCKLSSGKYGCCPLPNATCCSDH---- 969
PS Q CP+ E QCHN T C ++G+ C P C D
Sbjct: 256 PSGWMGTVCGQPCPEGRFGKNCSQECQCHNGGT-CDAATGQCHCSPGYTGERCQDECPVG 314
Query: 970 ---IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TKLPAHSVQEVKCDTKVSCPDDY 1122
+ C C +G C V C + + + +L + +KCD + C D
Sbjct: 315 SYGVRCAEACRCVNGGKCYHVSGTCLCEAGFSGELCEARLCPEGLYGIKCDKRCPCHLDN 374
Query: 1123 T-CCRLQSGKWGCCPFVQAVCCND------------HVHCCPTGYQCNIKKGTC 1245
T C SG+ GC P + CN+ + C G C+ G C
Sbjct: 375 THSCHPMSGECGCKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGRC 428
Score = 55.1 bits (131), Expect = 1e-07
Identities = 95/401 (23%), Positives = 126/401 (31%), Gaps = 76/401 (18%)
Frame = +1
Query: 313 QCPDGQLC-PV--ACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
QC + LC P+ AC G + C D+ + G C + QC G +C
Sbjct: 153 QCKNRALCNPITGACHCAAGYRGWRC----EDRCEQGT---YGNDCHQRCQCQNGATCDH 205
Query: 484 TTNETSNCCPFPEAVSCRD-------GLHC--------------------CPQGFHCSAD 582
T E C P C D G HC CP G+ +
Sbjct: 206 ITGEC-RCSPGYTGAFCEDLCPPGKHGPHCEQRCPCQNGGVCHHVTGECSCPSGWMGTVC 264
Query: 583 GWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHG 762
G C P+ + + + + C N TC G C P C D+ +G
Sbjct: 265 GQPC---PEGRFGKNC---SQECQCHNGGTC-DAATGQCHCSPGYTGERCQDECPVGSYG 317
Query: 763 TSCDLA-----HSRCLTVTNTHPMAKIPSQETIKTAVQCP--------DAESQCH-NNST 900
C A +C V+ T S E + + CP D CH +N+
Sbjct: 318 VRCAEACRCVNGGKCYHVSGTCLCEAGFSGELCEARL-CPEGLYGIKCDKRCPCHLDNTH 376
Query: 901 CCKLSSGKYGCCP-----LPNATC-------CSDHIHCCPHGFVCDPVKKKCFSKEN-EA 1041
C SG+ GC P N TC I C +G CD V +C +
Sbjct: 377 SCHPMSGECGCKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGRCACAPGFKG 436
Query: 1042 IDFFTKLPAHSVQEVKCDTKVSCPDDYTCC-------------------RLQSGKWGCCP 1164
D T P + C ++ C +D C R SG WG
Sbjct: 437 TDCSTPCPLGRYG-INCSSRCGCKNDAVCSPVDGSCICKAGWHGVDCSIRCPSGTWG--- 492
Query: 1165 FVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENP 1287
F + C C G CN GTC W K E P
Sbjct: 493 FGCNLTCQ-----CLNGGACNTLDGTCTCAPGWRGAKCEFP 528
>ref|NP_001156449.1| multiple epidermal growth factor-like domains protein 6 precursor
[Mus musculus].
Length = 1572
Score = 58.9 bits (141), Expect = 9e-09
Identities = 87/372 (23%), Positives = 116/372 (31%), Gaps = 58/372 (15%)
Frame = +1
Query: 325 GQLCPVACCLDPGGASYSCCNPV------PDKWP------KALSQHLGVPCKTKAQCPPG 468
G+ C +C GG C+P+ P+ W + L H G C+ C G
Sbjct: 1041 GKNCQHSCLCRNGGN----CDPILGQCTCPEGWTGLACENECLPGHHGAGCRLNCSCLNG 1096
Query: 469 HSCILTTNE-------TSNCCPFPEAVSCRDGLHC-----CPQGFHCSADGWSCLRRPDT 612
+C T T + C P VS G+HC C +G C +CL P
Sbjct: 1097 GTCDRLTGHCRCPTGWTGDKCQSP-CVSGMFGVHCEEHCACRKGATCHHVTGACLCPPGW 1155
Query: 613 KPSD-DILCPNSQF--------HCPNSSTC------CTMLDGSWG------CCPMPQASC 729
+ S + CP F HCP ++C C G G C P
Sbjct: 1156 RGSHCEQACPRGWFGEACAQRCHCPPGASCHHVSGECHCPPGFTGPGCEQACQPGTFGKD 1215
Query: 730 CGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAES--QCHNNSTC 903
C C +C A C+ H Q+ + P E +C N TC
Sbjct: 1216 CEHPCQCPGETWACHPASGACVCAAGYHGT---DCQQRCPSGRYGPGCEQICKCLNGGTC 1272
Query: 904 ------CKLSSGKYGC-----CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDF 1050
C +G G CP H+ C G CDPV C
Sbjct: 1273 DPATGACYCPAGFLGADCSLACPQGRFGPSCAHVCTCGQGAACDPVSGTCICPPG----- 1327
Query: 1051 FTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNI 1230
K H C+ CP D + GK GC +H C G C+
Sbjct: 1328 --KTGGH------CER--GCPQD------RFGK-GC----------EHKCACRNGGLCHA 1360
Query: 1231 KKGTCDLETQWV 1266
G+C W+
Sbjct: 1361 TNGSCSCPLGWM 1372
Score = 53.1 bits (126), Expect = 5e-07
Identities = 71/306 (23%), Positives = 98/306 (32%), Gaps = 30/306 (9%)
Frame = +1
Query: 430 GVPCKTKAQCPPGHSCILTTNE-TSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRP 606
G C+ + C PG +C + E + C P + C G +CS SC+ P
Sbjct: 694 GPGCRNRCTCRPGVACDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSG-SCSCVGAP 752
Query: 607 DTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHS 786
+ + + LCP + + C +G WG C + C HG SCD
Sbjct: 753 CHRVTGECLCPPGKTGEDCGADC---PEGRWGL-------GCQEICPACEHGASCDPETG 802
Query: 787 RCLTVTNTHPMAKIPSQETIKTAVQCPDA--ESQCHNNSTC-----CKLSSGKYGCCPLP 945
CL +P + CP + C C C ++G+ C P
Sbjct: 803 TCLC---------LPGFVGSRCQDACPAGWFGTGCQMRCACANDGHCHPATGRCSCAPGW 853
Query: 946 NATCCS----------DHIHCC----PHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQE 1083
C D IH C HG CD V C + +
Sbjct: 854 TGLSCQRACDSGHWGPDCIHPCNCSAGHG-NCDAVSGLCLCEAGYEGPQCEQWCRQGYFG 912
Query: 1084 VKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGY-------QCNIKKGT 1242
C+ K C TC + SG C + C H CP G+ CN G
Sbjct: 913 PGCEQKCRCEHGATCDHV-SGACTCPAGWRGSFCE---HACPAGFFGLDCGSACNCSAGA 968
Query: 1243 -CDLET 1257
CD T
Sbjct: 969 PCDAVT 974
Score = 52.0 bits (123), Expect = 1e-06
Identities = 87/378 (23%), Positives = 117/378 (30%), Gaps = 67/378 (17%)
Frame = +1
Query: 316 CPDGQLC--PVACCLDPGGASYSCCNPV--PDKWPKALSQHLGVPCKTKAQCPPGHSCIL 483
C +G C + C P G + CN PD + G C + C G +C
Sbjct: 529 CRNGGTCFPGLDGCDCPEGWTGIICNETCPPDTF--------GKNCSSPCICQNGGTC-- 578
Query: 484 TTNETSNCCPFPEAVSCRDGLHC---CPQGF---------HCSADG------WSCLRRPD 609
+ S C P VS G HC CP+GF HC+ G +CL P
Sbjct: 579 --DPVSGACRCPPGVS---GAHCEDGCPKGFYGKHCRKKCHCANRGRCHRLYGACLCDPG 633
Query: 610 TKP----------------SDDILCPNSQFH-CPNSSTCCTMLDGSWG------CCPMPQ 720
S+D LC S C + C+ G G C P
Sbjct: 634 LYGRFCHLACPPWAFGPGCSEDCLCEQSHTRSCNSKDGSCSCKAGFQGERCEAECEPGSF 693
Query: 721 ASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQET------IKTAVQCPDAESQ 882
C ++ C P G +CD C T + QE + + C +
Sbjct: 694 GPGCRNRCTCRP-GVACDPVSGECRTQCPPGYQGEDCGQECPVGTFGVNCSGSCSCVGAP 752
Query: 883 CHNNSTCCKLSSGKYG--C---CPLPN-ATCCSDHIHCCPHGFVCDPVKKKCFSKENEAI 1044
CH + C GK G C CP C + C HG CDP C
Sbjct: 753 CHRVTGECLCPPGKTGEDCGADCPEGRWGLGCQEICPACEHGASCDPETGTCLCLPGFVG 812
Query: 1045 DFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCN----------DH 1194
C + +C +D C +G+ C P + C D
Sbjct: 813 SRCQDACPAGWFGTGCQMRCACAND-GHCHPATGRCSCAPGWTGLSCQRACDSGHWGPDC 871
Query: 1195 VHCCPTGYQCNIKKGTCD 1248
+H C C+ G CD
Sbjct: 872 IHPC----NCSAGHGNCD 885
>ref|NP_001078996.1| keratin-associated protein 9-1 [Mus musculus].
Length = 358
Score = 54.7 bits (130), Expect = 2e-07
Identities = 65/238 (27%), Positives = 85/238 (35%), Gaps = 6/238 (2%)
Frame = +1
Query: 310 TQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTT 489
T C C CC AS CC+P P P C+T PP C+ +
Sbjct: 153 TSCCQPSCCETTCCKPACVAS--CCSP-PCCQPSCCETTC---CRTTCYKPP---CVTSC 203
Query: 490 NETSNC---CPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCP 660
+SNC C P ++ CC SC R KP+ I C Q C
Sbjct: 204 CHSSNCETTCYKPTCITSCCQPSCCET---------SCCRTTCCKPTCVISC--CQPSCC 252
Query: 661 NSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQE 840
++ C T C P SCC + CC T+C C+T + P + E
Sbjct: 253 ETTCCRTTC-----CKPTCVISCC--QPSCCE--TTC--CKPVCVTSCYSPPCCQPSCCE 301
Query: 841 TIKTAVQC--PDAESQCHNNSTCCKLSSGKYGCC-PLPNATCCSDHIHCCPHGFVCDP 1005
T C P + C S CC+ + + CC P +CCS CC C P
Sbjct: 302 TTCCRTTCCKPTCVTSCCQPS-CCETTCCRSTCCKPACVTSCCSP--PCCCESSSCKP 356
>ref|NP_079689.2| RIKEN cDNA 1110058A15 [Mus musculus].
Length = 139
Score = 53.1 bits (126), Expect = 5e-07
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 2/147 (1%)
Frame = +1
Query: 526 VSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC 705
+SC+ C C + P P CP CP S+CC++ GS GC
Sbjct: 1 MSCQQSQQQCQAPAKCPPK----CQTPKCPPKCPPKCPPK---CPPVSSCCSL--GSGGC 51
Query: 706 CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQC 885
C CC C G C L+H R H + + S C
Sbjct: 52 CGSSSGGCCSSGGCCSSGGGGCCLSHHRPRRSLRRHRHS---------SGCCSSGGSSGC 102
Query: 886 HNNSTCCKLSSGKYGCCPLPNAT--CC 960
+S CC S G GCC + CC
Sbjct: 103 CGSSGCCGSSGGSSGCCGSSGGSSGCC 129
>ref|NP_032600.2| sperm mitochondrial-associated cysteine-rich protein [Mus
musculus].
Length = 197
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/153 (28%), Positives = 52/153 (33%)
Frame = +1
Query: 436 PCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTK 615
P KT QCPP CCP C CCPQ C C +
Sbjct: 58 PSKTN-QCPPP------------CCP---PKPCCPPKPCCPQKPPCCPKSPCCPPKSPCC 101
Query: 616 PSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCL 795
P CP CP +TC L CCP + SCC K CCP C A C
Sbjct: 102 PPKPCPCP-PPCPCPCPATCPCPLKPP--CCPQ-KCSCCPKKCTCCPQPPPC-CAQPTCC 156
Query: 796 TVTNTHPMAKIPSQETIKTAVQCPDAESQCHNN 894
+ N S +T++ Q P + N
Sbjct: 157 SSENKTESDSDTSGQTLEKGSQSPQSPPGAQGN 189
>ref|NP_001004157.2| scavenger receptor class F member 1 [Mus musculus].
Length = 820
Score = 50.8 bits (120), Expect = 2e-06
Identities = 67/264 (25%), Positives = 86/264 (32%), Gaps = 39/264 (14%)
Frame = +1
Query: 316 CPDGQLC--PVACCLDPGGASYSCCNPVPDK-WPKALSQHLGVPCKTKAQCPPGHS-CIL 483
C ++C P C PG C + P + W + PC + QC P C
Sbjct: 66 CRKEEVCVKPGLCRCKPGFFGAQCSSRCPGQYWGHDCRETC--PCHPRGQCEPATGDCQC 123
Query: 484 TTNETSNCCPFPEAVSCRDGLH--CCPQGFHCSAD-GW---SCLRRPDTKPSD------- 624
N C FP C G H C P+ C D GW +C R P+
Sbjct: 124 QPNYWGRLCEFP----CTCGPHGQCDPKTGLCHCDPGWWSPTCRRPCQCNPASRCDQATG 179
Query: 625 DILCPNSQF--HCPNSSTC-----------CTMLDGSWG--C---CPMPQASCCGDKVHC 750
+CP + C S C C L G WG C C + C HC
Sbjct: 180 TCVCPPGWWGRRCSFSCNCHTSPCMQDSGRCVCLPGWWGPECSRKCQCVRGQCSVTSGHC 239
Query: 751 -CP---HGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSS 918
CP HG C+L + P QC ++ C N+TC ++
Sbjct: 240 SCPPGFHGIRCELPCN--------------PGHY----GAQCKESCGHCELNATCSPVTG 281
Query: 919 GKYGCCPLPNATCCSDHIHCCPHG 990
C P N T C CP G
Sbjct: 282 NCESCKPGWNGTQCKQP---CPAG 302
>ref|NP_080670.2| late cornified envelope 1F [Mus musculus].
Length = 147
Score = 50.4 bits (119), Expect = 3e-06
Identities = 38/150 (25%), Positives = 51/150 (34%), Gaps = 5/150 (3%)
Frame = +1
Query: 526 VSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC 705
+SC+ C C+ + P P CP CP S+CC++ GS GC
Sbjct: 1 MSCQQSQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPK---CPPVSSCCSL--GSGGC 55
Query: 706 CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQC 885
C CC C G C L+H R P + + C
Sbjct: 56 CGSSSGGCCSSGGCCSSGGGGCCLSHHR--------PRRSLRRHRHSSGCCSSGGSSGCC 107
Query: 886 HN---NSTCCKLSSGKYGCCPLPNAT--CC 960
+ +S CC S G GCC + CC
Sbjct: 108 GSSGGSSGCCGSSGGSSGCCGSSGGSSGCC 137
>ref|NP_082898.1| late cornified envelope 1C [Mus musculus].
Length = 147
Score = 50.4 bits (119), Expect = 3e-06
Identities = 38/150 (25%), Positives = 51/150 (34%), Gaps = 5/150 (3%)
Frame = +1
Query: 526 VSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC 705
+SC+ C C+ + P P CP CP S+CC++ GS GC
Sbjct: 1 MSCQQSQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPK---CPPVSSCCSL--GSGGC 55
Query: 706 CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQC 885
C CC C G C L+H R P + + C
Sbjct: 56 CGSSSGGCCSSGGCCSSGGGGCCLSHHR--------PRRSLHRHRHSSGCCSSGGSSGCC 107
Query: 886 HN---NSTCCKLSSGKYGCCPLPNAT--CC 960
+ +S CC S G GCC + CC
Sbjct: 108 GSSGGSSGCCGSSGGSSGCCGSSGGSSGCC 137
>ref|NP_081098.1| late cornified envelope 1B [Mus musculus].
Length = 137
Score = 50.1 bits (118), Expect = 4e-06
Identities = 36/140 (25%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Frame = +1
Query: 526 VSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGC 705
+SC+ C C+ + P P CP CP S+CC++ GS GC
Sbjct: 1 MSCQQNQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPK---CPPVSSCCSL--GSGGC 55
Query: 706 CPMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQC 885
C CC C G C L+H R P + + C
Sbjct: 56 CGSSSGGCCSSGGCCSSGGGGCCLSHHR--------PRRSLRRHRHSSGCCSSGGSSGCC 107
Query: 886 HN---NSTCCKLSSGKYGCC 936
+ +S CC S G GCC
Sbjct: 108 GSSGGSSGCCGSSGGSSGCC 127
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,289,058
Number of extensions: 1457775
Number of successful extensions: 7515
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6771
Number of HSP's successfully gapped: 17
Length of query: 449
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 344
Effective length of database: 12,463,779
Effective search space: 4287539976
Effective search space used: 4287539976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038043.1| granulins [Sus scrofa]. 811 0.0
Alignment gi|XP_003356178.1| PREDICTED: multiple epidermal growth factor-... 59 5e-09
Alignment gi|XP_003354310.1| PREDICTED: multiple epidermal growth factor-... 59 5e-09
Alignment gi|XP_003358240.1| PREDICTED: scavenger receptor class F member... 55 7e-08
Alignment gi|XP_003354093.1| PREDICTED: fibrillin-3-like [Sus scrofa]. 51 2e-06
Alignment gi|XP_003123232.2| PREDICTED: fibrillin-3 [Sus scrofa]. 51 2e-06
Alignment gi|XP_003128799.2| PREDICTED: protein jagged-2 [Sus scrofa]. 50 3e-06
Alignment gi|XP_003359017.1| PREDICTED: keratin-associated protein 10-8-l... 49 5e-06
Alignment gi|XP_003134230.2| PREDICTED: prolow-density lipoprotein recept... 49 6e-06
>ref|NP_001038043.1| granulins [Sus scrofa].
Length = 583
Score = 811 bits (2096), Expect = 0.0
Identities = 349/363 (96%), Positives = 356/363 (98%)
Frame = +1
Query: 259 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 438
MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP
Sbjct: 1 MWTLVSWVALVTGLVAGTQCPDGQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVP 60
Query: 439 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 618
CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP
Sbjct: 61 CKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKP 120
Query: 619 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 798
SDDILCPNSQFHCPNSSTCCTMLDGSWGCCP+PQASCCGDKVHCCPHGTSCDLAHSRCLT
Sbjct: 121 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPLPQASCCGDKVHCCPHGTSCDLAHSRCLT 180
Query: 799 VTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 978
VTNTHPMAKIPSQETIKTA+QCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC
Sbjct: 181 VTNTHPMAKIPSQETIKTAIQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHC 240
Query: 979 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWGC 1158
CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDT+VSCPDDYTCCRLQSGKWGC
Sbjct: 241 CPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTEVSCPDDYTCCRLQSGKWGC 300
Query: 1159 CPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLXPAELLASGKDVPC 1338
CPFVQAVCCNDHVHCCPTGYQCNI+KGTCDLETQWVPWKE+ P SL +LLA +DVPC
Sbjct: 301 CPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQWVPWKEKIPASLSRPDLLAMERDVPC 360
Query: 1339 DNV 1347
DNV
Sbjct: 361 DNV 363
Score = 235 bits (599), Expect = 5e-62
Identities = 133/373 (35%), Positives = 170/373 (45%), Gaps = 32/373 (8%)
Frame = +1
Query: 316 CPDGQLCPVACCLDPGGASYSCCNPVPDKWPKAL--SQHLGVPCKTKAQCPPGHS----- 474
CP G C +A +S C V + P A SQ KT QCP S
Sbjct: 165 CPHGTSCDLA---------HSRCLTVTNTHPMAKIPSQET---IKTAIQCPDAESQCHNN 212
Query: 475 --CILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPD----------TKP 618
C ++ CCP P A C D +HCCP GF C C + +
Sbjct: 213 STCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHS 272
Query: 619 SDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLAHSRCLT 798
++ C +++ CP+ TCC + G WGCCP QA CC D VHCCP G C++ C
Sbjct: 273 VQEVKC-DTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDL 331
Query: 799 VTNTHPMA-KIPSQET------IKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATC 957
T P KIP+ + ++ V C D S C ++STCC ++ G++GCCP P A C
Sbjct: 332 ETQWVPWKEKIPASLSRPDLLAMERDVPC-DNVSSCPSSSTCCPVTPGEWGCCPAPEAVC 390
Query: 958 CSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVK------CDTKVSCPDD 1119
CSDH +CCP G C V K ++ + + K+P + CD SCP
Sbjct: 391 CSDHQYCCPKGHTC--VGKGHCKRKKDMVTGLNKMPTRRASASQPGNTTGCDQHTSCPVG 448
Query: 1120 YTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENPXSLX 1299
TCC S W CC AVCC D HCCP GY CN+K TC+ KEE+ S
Sbjct: 449 QTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCE--------KEED--SAL 498
Query: 1300 PAELLASGKDVPC 1338
PA LA DV C
Sbjct: 499 PATHLARVGDVAC 511
Score = 223 bits (568), Expect = 2e-58
Identities = 111/306 (36%), Positives = 152/306 (49%), Gaps = 26/306 (8%)
Frame = +1
Query: 433 VPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSC------ 594
V C T+ CP ++C + CCPF +AV C D +HCCP G+ C+ + +C
Sbjct: 276 VKCDTEVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIEKGTCDLETQW 335
Query: 595 ----------LRRPDTKPSD-DILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDK 741
L RPD + D+ C N CP+SSTCC + G WGCCP P+A CC D
Sbjct: 336 VPWKEKIPASLSRPDLLAMERDVPCDNVS-SCPSSSTCCPVTPGEWGCCPAPEAVCCSDH 394
Query: 742 VHCCPHGTSCDLAHSRC------LTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC 903
+CCP G +C + C +T N P + + + T C D + C TC
Sbjct: 395 QYCCPKGHTC-VGKGHCKRKKDMVTGLNKMPTRRASASQPGNTT-GC-DQHTSCPVGQTC 451
Query: 904 CKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHS--- 1074
C S + CC LP+A CC D HCCP G+ C+ + C +E+ A LPA
Sbjct: 452 CPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDSA------LPATHLAR 505
Query: 1075 VQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLE 1254
V +V C + C ++YTCCR G W CCP+ Q +CC D HCCP G++C +GT L
Sbjct: 506 VGDVACGERRFCHNNYTCCRDSLGGWACCPYRQGICCADGRHCCPAGFRCG-ARGTKCLH 564
Query: 1255 TQWVPW 1272
+ + W
Sbjct: 565 KEALRW 570
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 25/129 (19%)
Frame = +1
Query: 292 TGLVAGTQCPDGQLC------PVACCLDPGG-----------ASYSC------CNPVPDK 402
TG T CP GQ C ACC P A Y+C C D
Sbjct: 437 TGCDQHTSCPVGQTCCPSLSKGWACCQLPHAVCCEDRQHCCPAGYTCNVKARTCEKEEDS 496
Query: 403 WPKA--LSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCS 576
A L++ V C + C ++C + CCP+ + + C DG HCCP GF C
Sbjct: 497 ALPATHLARVGDVACGERRFCHNNYTCCRDSLGGWACCPYRQGICCADGRHCCPAGFRCG 556
Query: 577 ADGWSCLRR 603
A G CL +
Sbjct: 557 ARGTKCLHK 565
>ref|XP_003356178.1| PREDICTED: multiple epidermal growth factor-like domains protein
6-like [Sus scrofa].
Length = 1982
Score = 59.3 bits (142), Expect = 5e-09
Identities = 92/371 (24%), Positives = 116/371 (31%), Gaps = 53/371 (14%)
Frame = +1
Query: 292 TGLVAGTQCPDG-------QLCPV------------ACCLDPGGASYSCCNPVPDKWPKA 414
TG G +CP+G ++CP AC PG C + P
Sbjct: 1251 TGDDCGAECPEGRWGLGCQEICPACEHGATCEPETGACLCRPGFTGSRCQDGCPQG---- 1306
Query: 415 LSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGF--------- 567
H G C + QC G +C + S C P CP GF
Sbjct: 1307 ---HYGPGCGQQCQCEHGAAC----DHVSGACTCPAGWRGTFCERACPAGFFGVDCHHAC 1359
Query: 568 HCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVH 747
+CSA G SC S LCP + P S C C +V
Sbjct: 1360 NCSA-GASC-----DAVSGSCLCPPGR-QGPRCSQTCPAHTYGHNC----------SQVC 1402
Query: 748 CCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC------CK 909
C +G SCD H +C A + + C + C N TC C
Sbjct: 1403 SCSNGASCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHS-CLCQNGGTCDPVSGHCS 1461
Query: 910 LSSGKYG------CCP-LPNATCCSDHIHCCPHGFVCDPVKKKCFSKENEAIDFFTKLPA 1068
G G C P L A+C H C +G +CDP C D A
Sbjct: 1462 CPEGWAGLACEKECLPGLFGASC--QHSCRCLNGGLCDPRTGHCLCLAGWTGDECQSPCA 1519
Query: 1069 HSVQEVKCDTKVSCPDDYTCCRLQSGKWGCCPFVQAVCCNDHV-----------HC-CPT 1212
V+CD +C + R Q G C P +A C HC CP
Sbjct: 1520 EGTFGVRCDEPCACRWEAAATR-QRGLL-CPPGWRARMCPTACPPGWFGEGCAQHCQCPP 1577
Query: 1213 GYQCNIKKGTC 1245
G C+ G C
Sbjct: 1578 GAACHHVSGEC 1588
Score = 53.5 bits (127), Expect = 3e-07
Identities = 77/333 (23%), Positives = 100/333 (30%), Gaps = 23/333 (6%)
Frame = +1
Query: 325 GQLCPVACCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNET-- 498
G LCP PG + C P W G C QCPPG +C + E
Sbjct: 1544 GLLCP------PGWRARMCPTACPPGW-------FGEGCAQHCQCPPGAACHHVSGECHC 1590
Query: 499 ----------SNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSD-DILCPNS 645
C P SC C + C +C+ S CP
Sbjct: 1591 PPGFTGPGCEQACPPGTFGESCGQKCQCPGENQACHPASGACVCAAGYHGSGCRQRCPPG 1650
Query: 646 QFHCPNSSTCCTMLDG-----SWGCCPMPQASCCGDKVHCCPHGT-SCDLAH-SRCLTVT 804
+F P C L+G + G C P D CPHG AH RC
Sbjct: 1651 RFG-PGCEQLCACLNGGSCDPATGACRCPAGFLGTDCGLACPHGRFGLGCAHVCRCGQGA 1709
Query: 805 NTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC---CKLSSGKYGCCPLPNATCCSDHIH 975
P+ + +T V C Q C C +G G C N +C
Sbjct: 1710 ACDPVTGTCTCPPGRTGVHCEHGCPQNRFGVNCEGTCSCRNG--GLCHATNGSCSCGLGW 1767
Query: 976 CCPHGFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSCPDDYTCCRLQSGKWG 1155
PH + P + C + SC + TC SG
Sbjct: 1768 TGPHCELACPAGR---------------------YGAACHLECSCRNQGTC-EPASGACH 1805
Query: 1156 CCPFVQAVCCNDHVHCCPTGYQCNIKKGTCDLE 1254
C P C H CP+G+ +GTC+ +
Sbjct: 1806 CGPGFYGQACE---HPCPSGFHGAGCRGTCECQ 1835
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/311 (23%), Positives = 92/311 (29%), Gaps = 33/311 (10%)
Frame = +1
Query: 430 GVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQ---GFHCSADGWSCLR 600
G C CPPG +C + E C P +D CP G +CS SC
Sbjct: 1178 GPGCLQTCTCPPGVACDPISGECGKEC--PAGYRGKDCGQECPAGTFGLNCSG-SCSCRG 1234
Query: 601 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 780
P + LCP + + C +G WG C + C HG +C+
Sbjct: 1235 APCDPVTGQCLCPPGRTGDDCGAEC---PEGRWGL-------GCQEICPACEHGATCEPE 1284
Query: 781 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTC------CKLSS 918
CL P + CP + QC + + C C +
Sbjct: 1285 TGACLC---------RPGFTGSRCQDGCPQGHYGPGCGQQCQCEHGAACDHVSGACTCPA 1335
Query: 919 GKYG-----CCPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKE-NEAIDFFTKLPAHSV- 1077
G G CP H C G CD V C + PAH+
Sbjct: 1336 GWRGTFCERACPAGFFGVDCHHACNCSAGASCDAVSGSCLCPPGRQGPRCSQTCPAHTYG 1395
Query: 1078 ----QEVKCDTKVSCPDDYTCCRLQSGKWG--CCPFVQAVCCND---HVHCCPTGYQCNI 1230
Q C SC + CR G G C A D H C G C+
Sbjct: 1396 HNCSQVCSCSNGASCDPVHGQCRCGPGWTGPACLQACPAGLYGDNCQHSCLCQNGGTCDP 1455
Query: 1231 KKGTCDLETQW 1263
G C W
Sbjct: 1456 VSGHCSCPEGW 1466
>ref|XP_003354310.1| PREDICTED: multiple epidermal growth factor-like domains protein 10
[Sus scrofa].
Length = 1152
Score = 59.3 bits (142), Expect = 5e-09
Identities = 75/315 (23%), Positives = 102/315 (32%), Gaps = 41/315 (13%)
Frame = +1
Query: 424 HLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRR 603
H G C ++ QC + C P A C G GW C R
Sbjct: 80 HWGPHCSSRCQC----------KNRALCNPITGACHCAAGFR-----------GWRCEER 118
Query: 604 PD--TKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDL 777
+ T +D C + + C N +TC + G C P + C D HG C+
Sbjct: 119 CEQGTYGND---C-HQRCQCQNGATC-DHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQ 173
Query: 778 A-----HSRCLTVTNTHPMAKIPSQETIKTAVQCPDA--------ESQCHNNSTCCKLSS 918
C VT P P CP+ E QCHN TC ++
Sbjct: 174 RCPCQNGGVCHHVTGECPCP--PGWLGTVCGQPCPEGRFGKNCSQECQCHNGGTC-DAAT 230
Query: 919 GKYGCCPLPNATCCSDH-------IHC-----CPHGFVCDPVKKKCFSKENEAIDFF-TK 1059
G+ C P C D + C C +G C V C + A D +
Sbjct: 231 GQCHCSPGYTGERCQDECPVGTYGVGCAETCQCVNGGKCYHVSGSCLCEAGFAGDRCEAR 290
Query: 1060 LPAHSVQEVKCDTKVSC-PDDYTCCRLQSGKWGCCPFVQAVCCND------------HVH 1200
L + +KCD C PD+ C SG+ C P + CN+ +
Sbjct: 291 LCPEGLYGIKCDKHCPCHPDNTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQIC 350
Query: 1201 CCPTGYQCNIKKGTC 1245
C G C+ G C
Sbjct: 351 SCQNGADCDSVTGKC 365
Score = 52.8 bits (125), Expect = 4e-07
Identities = 88/345 (25%), Positives = 110/345 (31%), Gaps = 21/345 (6%)
Frame = +1
Query: 316 CPDGQLCPVA---CCLDPGGASYSCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILT 486
C +G +C C PG C P P+ G C + QC G +C
Sbjct: 177 CQNGGVCHHVTGECPCPPGWLGTVCGQPCPEG-------RFGKNCSQECQCHNGGTCDAA 229
Query: 487 TNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNS 666
T + +C P C+D CP G + +C C N
Sbjct: 230 TGQC-HCSPGYTGERCQDE---CPVGTYGVGCAETC-------------------QCVNG 266
Query: 667 STCCTMLDGSWGCCPMPQASCCGDKVHC--CP---HGTSCDLAHSRCLTVTNTHPMAKIP 831
C + GS C +A GD+ CP +G CD H C NTH
Sbjct: 267 GKCYHV-SGSCLC----EAGFAGDRCEARLCPEGLYGIKCD-KHCPCHP-DNTH------ 313
Query: 832 SQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIHCCPHGFVCDPVK 1011
S + C S + N TC S G YG C I C +G CD V
Sbjct: 314 SCHPMSGECACKPGWSGLYCNETC---SPGFYG-------EACQQ-ICSCQNGADCDSVT 362
Query: 1012 KKCFSKEN-EAIDFFTKLPAHSVQEVKCDTKVSCPDDYTC------CRLQSGKWGC---- 1158
KC + ID T V C + C +D C C ++G G
Sbjct: 363 GKCTCAPGFKGIDCSTPCSL-GTYGVNCSSLCGCKNDAMCSPVDGSCTCKAGWHGVDCSI 421
Query: 1159 -CPF-VQAVCCNDHVHCCPTGYQCNIKKGTCDLETQWVPWKEENP 1287
CP CN C G CN GTC W K E P
Sbjct: 422 SCPSGTWGFGCNLTCQCL-NGGACNTLDGTCTCAPGWRGEKCEFP 465
>ref|XP_003358240.1| PREDICTED: scavenger receptor class F member 1 [Sus scrofa].
Length = 830
Score = 55.5 bits (132), Expect = 7e-08
Identities = 86/356 (24%), Positives = 112/356 (31%), Gaps = 39/356 (10%)
Frame = +1
Query: 295 GLVAGTQCPD---GQLCPVACCLDPGGA---SYSCCNPVPDKWPKALSQHLGVPCKTKAQ 456
G ++CP G C C P G + C PD+W G C+
Sbjct: 83 GAQCNSRCPGQYWGPDCRETCTCHPHGQCEPATGVCRCQPDRW--------GSRCEFPCA 134
Query: 457 CPPGHSCILTTNETSNCCPFPEAVSCRDGLHCCPQGFHCSADGWSCLRRPDTKPSD-DIL 633
C P C T +C P + +CR C P C SCL P
Sbjct: 135 CGPHGRCDPETG-ACHCEPGWWSSTCRRPCQCNPAAARCDPATGSCLCEPGWWGRRCSFR 193
Query: 634 CPNSQFHCPNSSTCCTMLDGSWG--C---CPMPQASCCGDKVHC-CPHGTSCDLAHSRCL 795
CP C S C G WG C C + C C CP G +RC
Sbjct: 194 CPCHGSPCAQESGRCACRPGWWGPECRQPCECVRGRCSAASGQCICPPG----FRGARC- 248
Query: 796 TVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCCSDHIH 975
++P + QC D+ C N C + C P N T C H
Sbjct: 249 ---------ELPCAPG-RYGPQCRDSCGHCKQNEPCSADTGRCESCEPGWNGTQC--HQP 296
Query: 976 C------------CPH---GFVCDPVKKKCFSKENEAIDFFTKLPAHSVQEVKCDTKVSC 1110
C CPH G C P C S + + + P + + D +C
Sbjct: 297 CPPGTFGESCRQQCPHCRLGEACQPDTGHCQSCDPGRLGLRCEDPCPTGTFGE-DCGSTC 355
Query: 1111 PDDYTC----CRLQSGKWGCCPFVQAVCCNDHVHCCPTGYQ-------CNIKKGTC 1245
P TC C +G+ C CN CP+G+ C +GTC
Sbjct: 356 P---TCVQGACDAVTGECVCNTGYWGPSCN---ISCPSGFHGNNCSLPCECPEGTC 405
>ref|XP_003354093.1| PREDICTED: fibrillin-3-like [Sus scrofa].
Length = 1816
Score = 50.8 bits (120), Expect = 2e-06
Identities = 73/311 (23%), Positives = 98/311 (31%), Gaps = 40/311 (12%)
Frame = +1
Query: 448 KAQCPPGHSCILTT--NETSNC------CPFPEAVSCRDGLHC-CPQGFHCSADGWSCLR 600
+ CPPGH+ + T + C CP V+ C C GF +AD C+
Sbjct: 228 ECHCPPGHALAMGTACEDIDECSLSDGLCPHGHCVNVIGAFQCSCHHGFQSTADLQGCVD 287
Query: 601 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 780
+ + + Q HC N+ G G MP C D C + CD
Sbjct: 288 TDECRAGNG----GCQVHCVNTEGSYQCSCGQ-GYSLMPDGRACADVNECEENPDICD-- 340
Query: 781 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-CPL- 942
+ +C H C D + N C C+ + G + C C L
Sbjct: 341 NGQCTNEPGGHRCLCYNGFVATLDMRTCVDVDECDLNPHICLHGDCENTRGSFVCHCQLG 400
Query: 943 ----PNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAHSVQ 1080
AT CSD C G CD P C + D F + Q
Sbjct: 401 YVIRKGATGCSDLDECELGGHSCDSHASCLNIPGSFSCRCQPGWVGDGFECHDRDECAFQ 460
Query: 1081 EVKCDTKVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGYQCN 1227
E C + C P Y C C + C C +C N P GY+C
Sbjct: 461 EHGCSPRADCLNIPGSYRCSCHPGFTGDGFSCEDRDECAENVDLCENGQCLNAPGGYRCE 520
Query: 1228 IKKGTCDLETQ 1260
+ G E Q
Sbjct: 521 CEMGFNPTEDQ 531
>ref|XP_003123232.2| PREDICTED: fibrillin-3 [Sus scrofa].
Length = 2799
Score = 50.8 bits (120), Expect = 2e-06
Identities = 73/311 (23%), Positives = 98/311 (31%), Gaps = 40/311 (12%)
Frame = +1
Query: 448 KAQCPPGHSCILTT--NETSNC------CPFPEAVSCRDGLHC-CPQGFHCSADGWSCLR 600
+ CPPGH+ + T + C CP V+ C C GF +AD C+
Sbjct: 1089 ECHCPPGHALAMGTACEDIDECSLSDGLCPHGHCVNVIGAFQCSCHHGFQSTADLQGCVD 1148
Query: 601 RPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCGDKVHCCPHGTSCDLA 780
+ + + Q HC N+ G G MP C D C + CD
Sbjct: 1149 TDECRAGNG----GCQVHCVNTEGSYQCSCGQ-GYSLMPDGRACADVNECEENPDICD-- 1201
Query: 781 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTC----CKLSSGKYGC-CPL- 942
+ +C H C D + N C C+ + G + C C L
Sbjct: 1202 NGQCTNEPGGHRCLCYNGFVATLDMRTCVDVDECDLNPHICLHGDCENTRGSFVCHCQLG 1261
Query: 943 ----PNATCCSDHIHCCPHGFVCD--------PVKKKCFSKENEAIDFFT--KLPAHSVQ 1080
AT CSD C G CD P C + D F + Q
Sbjct: 1262 YVIRKGATGCSDLDECELGGHSCDSHASCLNIPGSFSCRCQPGWVGDGFECHDRDECAFQ 1321
Query: 1081 EVKCDTKVSC---PDDYTC-CR--LQSGKWGC-----CPFVQAVCCNDHVHCCPTGYQCN 1227
E C + C P Y C C + C C +C N P GY+C
Sbjct: 1322 EHGCSPRADCLNIPGSYRCSCHPGFTGDGFSCEDRDECAENVDLCENGQCLNAPGGYRCE 1381
Query: 1228 IKKGTCDLETQ 1260
+ G E Q
Sbjct: 1382 CEMGFNPTEDQ 1392
>ref|XP_003128799.2| PREDICTED: protein jagged-2 [Sus scrofa].
Length = 1072
Score = 50.1 bits (118), Expect = 3e-06
Identities = 72/294 (24%), Positives = 98/294 (33%), Gaps = 21/294 (7%)
Frame = +1
Query: 436 PCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHC--CPQGFHCSAD-GWSCLRRP 606
P + + CP G+S C P C +G C P GF C GWS
Sbjct: 334 PDQYRCVCPDGYSGRNCERAEHACASNP----CANGGSCHEVPSGFECHCPAGWS----G 385
Query: 607 DTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQ--ASCCGDKVHCCPHGTSCDLA 780
T D C +S C TC +DG CP A+C D C G C A
Sbjct: 386 PTCALDIDECASSP--CAAGGTCVDQVDGFECICPEQWVGATCQLDANEC--EGKPCLNA 441
Query: 781 HSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCHNNSTCCKLSSGKYGCCPLPNATCC 960
S C + + +P + + D QC + TC L +G Y C
Sbjct: 442 FS-CKNLIGGYYCDCVPGWMGVNCHININDCRGQCQHGGTCKDLVNG-YQC--------- 490
Query: 961 SDHIHCCPHGF---VCDPVKKKCFSKE------NEAIDFFTKLPAHSVQEVKCDTKVS-- 1107
CP GF C+ +C S + +D F C+ +
Sbjct: 491 -----VCPRGFGGRHCERELDECASSPCHGGFCQDLVDGFRCHCPQGFSGPLCEVDIDFC 545
Query: 1108 ----CPDDYTCCRLQSGKWGCCP-FVQAVCCNDHVHCCPTGYQCNIKKGTCDLE 1254
C + C L+ + CP V C++ CP G C + G C LE
Sbjct: 546 EPSPCQNGAPCYNLEGDYYCACPDHVSGKNCSELREPCPGG-ACRVVDG-CGLE 597
>ref|XP_003359017.1| PREDICTED: keratin-associated protein 10-8-like [Sus scrofa].
Length = 255
Score = 49.3 bits (116), Expect = 5e-06
Identities = 54/225 (24%), Positives = 73/225 (32%), Gaps = 15/225 (6%)
Frame = +1
Query: 376 SCCNPVPDKWPKALSQHLGVPCKTKAQCPPGHSCILTTNETSNCCPFPEAVSCRDGLHCC 555
SCC P PC + C P SC+ ++C P C
Sbjct: 41 SCCEP---------------PCCAPSGCAPA-SCLTLICTPASCVSNPCLSGCTSS---- 80
Query: 556 PQGFHCSADGWSCLRRPDTKPSDDILCPNSQFHCPNSSTCCTMLDGSWGCCPMPQASCCG 735
C+ SC ++ +PS P Q C S CCT + CC +AS C
Sbjct: 81 -----CTT---SCCQQSSCQPSCCTSSPCQQDCCV--SLCCTPVCCKPVCC---EASPCS 127
Query: 736 DKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIP--SQETIKTAVQCPDA--ESQCHNNSTC 903
D +C P + C P+ P + T V C A E+ + S+C
Sbjct: 128 DSSYCQPSCCTSSPCQQACCVPVCCRPVCCRPVCCRPVCCTPVCCTPACCEASPCSASSC 187
Query: 904 CKLSSGKYGCC-----------PLPNATCCSDHIHCCPHGFVCDP 1005
C+ S CC P+ CC CC C P
Sbjct: 188 CQPSPCPSSCCRPSSSVSLLCRPVCRPACCVPVSSCCAPASSCQP 232
>ref|XP_003134230.2| PREDICTED: prolow-density lipoprotein receptor-related protein 1-like
[Sus scrofa].
Length = 1977
Score = 48.9 bits (115), Expect = 6e-06
Identities = 59/230 (25%), Positives = 74/230 (32%), Gaps = 15/230 (6%)
Frame = +1
Query: 388 PVPDKWPKALSQHLGVPCKTKAQCPP------GHSCILTTNETSNC---CPFPEAVSCRD 540
P P P L VPC+ +C G ++ NC C P C D
Sbjct: 1739 PPPPPRPPLLCTRSSVPCRDGQECVSREYLCDGKRDCEDGSDEENCSYFCNKPGIFQCLD 1798
Query: 541 GLHCCPQGFHCSADGWSCLRRPDT----KPSDDILCPNSQFHCPNSSTCCTMLDGSWGCC 708
G C +HC CL D KP +D HC NSS C + SW C
Sbjct: 1799 GNKCIEVKYHCDGTP-QCLDGSDELDCWKPVED-----CSLHCDNSSRC---VPKSWLCD 1849
Query: 709 PMPQASCCGDKVHCCPHGTSCDLAHSRCLTVTNTHPMAKIPSQETIKTAVQCPDAESQCH 888
P S D+ C H +C + E QC + +C
Sbjct: 1850 GKPDCSDKKDEQGC---------IHEKC------------SASEFKCENGQCVSSSLRCD 1888
Query: 889 NNSTCCKLSSGKYGC--CPLPNATCCSDHIHCCPHGFVCDPVKKKCFSKE 1032
N C S + GC PLP CP G V P ++C E
Sbjct: 1889 GNRDCLDYSD-EEGCPARPLP-----------CPSGEVLCPRSRECVLAE 1926
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,137,381
Number of extensions: 1101958
Number of successful extensions: 5520
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5334
Number of HSP's successfully gapped: 15
Length of query: 449
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 347
Effective length of database: 8,804,438
Effective search space: 3055139986
Effective search space used: 3055139986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007159
(1347 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 434 e-119
>Sscrofa_Chr12
|| Length = 63588571
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 16 gcagacaggccctccctccagcctgagtcaggccagcaggacaagtctgaggaggcttga 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19210468 gcagacaggccctccctccagcctgagtcaggccagcaggacaagtctgaggaggcttga 19210527
Query: 76 ggctggactcccaagaagcaggtggagccaggtgtagatgccttgcagggagctgcgggc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19210528 ggctggactcccaagaagcaggtggagccaggtgtagatgccttgcagggagctgcgggc 19210587
Query: 136 attggagaagagcgtgaaagggccacaggccaggactgggcttcttcagccttacccggc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19210588 attggagaagagcgtgaaagggccacaggccaggactgggcttcttcagccttacccggc 19210647
Query: 196 caggagacggcctcgtggaggtggtctttgagctgagag 234
|||||||||||||||||||||||||||||||||||||||
Sbjct: 19210648 caggagacggcctcgtggaggtggtctttgagctgagag 19210686
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 248 gcaggtggaccatgtggaccctggtgagctgggtggccttggtgacagggctggtggctg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212414 gcaggtggaccatgtggaccctggtgagctgggtggccttggtgacagggctggtggctg 19212473
Query: 308 gaacacagtgcccggatggtcagctctgccccgtggcctgctgcctggacccgggaggag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212474 gaacacagtgcccggatggtcagctctgccccgtggcctgctgcctggacccgggaggag 19212533
Query: 368 ccagctacagctgctgcaatcccgttccgg 397
||||||||||||||||||||||||||||||
Sbjct: 19212534 ccagctacagctgctgcaatcccgttccgg 19212563
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 718 caggcttcctgctgtggagacaaggtgcactgctgcccccacggcacctcctgtgacctg 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213528 caggcttcctgctgtggagacaaggtgcactgctgcccccacggcacctcctgtgacctg 19213587
Query: 778 gcccattcccgctgcctcacagtgaccaacacccaccccatggcaaagatcccttcacaa 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213588 gcccattcccgctgcctcacagtgaccaacacccaccccatggcaaagatcccttcacaa 19213647
Query: 838 gagactataaagacag 853
||||||||||||||||
Sbjct: 19213648 gagactataaagacag 19213663
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 396 ggacaagtggcccaaggcactgagccagcatctgggcgtaccctgcaagactaaagccca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212686 ggacaagtggcccaaggcactgagccagcatctgggcgtaccctgcaagactaaagccca 19212745
Query: 456 gtgccctcctggccactcctgcatcctcaccaccaatgagacctccaactgctgcccgtt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212746 gtgccctcctggccactcctgcatcctcaccaccaatgagacctccaactgctgcccgtt 19212805
Query: 516 cccagagg 523
||||||||
Sbjct: 19212806 cccagagg 19212813
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 949 gccacctgctgctccgatcacatacactgctgcccccacggctttgtgtgtgacccggtc 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214091 gccacctgctgctccgatcacatacactgctgcccccacggctttgtgtgtgacccggtc 19214150
Query: 1009 aagaagaagtgcttctccaaggagaatgaagccatagacttcttcaccaagttgccagcg 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214151 aagaagaagtgcttctccaaggagaatgaagccatagacttcttcaccaagttgccagcg 19214210
Query: 1069 cactcag 1075
|||||||
Sbjct: 19214211 cactcag 19214217
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 605 cagataccaagccctcggatgacatcctgtgccccaacagccagttccattgccccaact 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213319 cagataccaagccctcggatgacatcctgtgccccaacagccagttccattgccccaact 19213378
Query: 665 cctccacgtgctgcactatgcttgacggctcctggggctgctgccccatgccccagg 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213379 cctccacgtgctgcactatgcttgacggctcctggggctgctgccccatgccccagg 19213435
Score = 212 bits (107), Expect = 4e-52
Identities = 161/177 (90%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 1172 aggctgtctgctgtaacgaccacgtacactgctgcccgaccggatatcagtgtaacataa 1231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214659 aggctgtctgctgtaacgaccacgtacactgctgcccgaccggatatcagtgtaacatag 19214718
Query: 1232 agaagggcacctgtgacctggaaacccagtgggtgccctggaaagaagagaatccggnca 1291
|||||||||||||||||||||| |||||||||||||||||||| || ||| |||| ||
Sbjct: 19214719 agaagggcacctgtgacctggagacccagtgggtgccctggaaggagaagatcccggcca 19214778
Query: 1292 gcctcaanccggcggaactcctagccagtgga-aaagatgtcccctgtgataacgtc 1347
|||||| | | |||| |||||||||| |||| | ||||||||||||||||||||||
Sbjct: 19214779 gcctcagccggccggacctcctagcca-tggagagagatgtcccctgtgataacgtc 19214834
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 851 cagccgtccagtgcccagatgcagagtcccagtgccacaataattccacctgctgcaagc 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19213752 cagccgtccagtgcccagatgcagagtcccagtgccacaataattccacctgctgcaagc 19213811
Query: 911 tgtccagtggaaagtatggctgctgcccgttgcccaatg 949
|||||||||||||||||||||||||||||||||||||||
Sbjct: 19213812 tgtccagtggaaagtatggctgctgcccgttgcccaatg 19213850
Score = 194 bits (98), Expect = 9e-47
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 1073 cagtgcaggaggtgaagtgtgacacaaaggtgagctgcccggacgactacacctgctgcc 1132
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 19214470 cagtgcaggaggtgaagtgtgacacagaggtgagctgcccggacgactacacctgctgcc 19214529
Query: 1133 gcctgcagtccggaaaatggggctgctgcccttttgtccagg 1174
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19214530 gcctgcagtccggaaaatggggctgctgcccttttgtccagg 19214571
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 521 aggccgtgtcatgcagggatggcctccactgctgcccgcagggcttccactgcagtgctg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212904 aggccgtgtcatgcagggatggcctccactgctgcccgcagggcttccactgcagtgctg 19212963
Query: 581 atgggtggtcctgcctccgaagaccag 607
|||||||||||||||||||||||||||
Sbjct: 19212964 atgggtggtcctgcctccgaagaccag 19212990
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,662,687
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 10
Length of query: 1347
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1326
Effective length of database: 2,808,413,156
Effective search space: 3723955844856
Effective search space used: 3723955844856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)