Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 492 e-139
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 375 e-104
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 310 2e-84
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 298 8e-81
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 264 1e-70
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 187 2e-47
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 159 3e-39
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 154 1e-37
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 85 1e-16
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 84 2e-16
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 492 bits (1267), Expect = e-139
Identities = 241/297 (81%), Positives = 261/297 (87%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RW+RERQ+VSHL DK+VFITGCDSGFGN LARQLD+RGLRVLA C
Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGA+QLR QTSDRL+TV+LDVTKTESIAAAT+WVKE VGDRGLWGLVNNAG FH
Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EW+K ET+ TL+VNLIGV EVTLSMLPLV+KAQGRIVNVSSILGR+AFFGAVYS SK
Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD+LR ELQHFGVKVS+VEPGYFRT MTD QK SE MKQ+WKE PAHIK+TYGQ
Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTDWQKFSEIMKQIWKETPAHIKETYGQ 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KFFDAYHD+MKQGL SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFF+PLSYL
Sbjct: 241 KFFDAYHDLMKQGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFVPLSYL 297
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 375 bits (962), Expect = e-104
Identities = 186/298 (62%), Positives = 228/298 (76%), Gaps = 1/298 (0%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DK+VFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA+QLR QTSDRL+TV+LDVTKT+S+AAAT+WVKERVGDRGLWGLVNNAG P
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+GV +VTLS+LPLV+KA+GR+VNVSSI+GRVA G Y SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV ++EPGYF+T +T + S+ + W + IK+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240
Query: 947 KFF-DAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KF + V +SC +L+LVT+CMEHALT+ HPRTRYS GWDA+F ++P+SYL
Sbjct: 241 KFMANLMKSVDLLETTSCQ-DLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYL 297
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus].
Length = 313
Score = 310 bits (794), Expect = 2e-84
Identities = 151/280 (53%), Positives = 205/280 (73%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
RW++ +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T++GAQ+L++ TS
Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
+L+T+LLDVTKTESI AATQWV+++VG++GLW LVNNAG P EWL E ++ +
Sbjct: 72 QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL+G+ EVTL MLP+VKKA+GR+VN+SS GRVA G Y SK GVEAFSD +R EL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELH 191
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
+FGVKVSI+EPG FRT + + M+++W+ +P +++YG+++F Y D +K +
Sbjct: 192 YFGVKVSIIEPGNFRTAILGKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLKSTMQ 251
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS 1111
++ VT+ MEHA+ S PR RY+ G DA+ ++PL+
Sbjct: 252 LADPRISEVTNSMEHAIVSRSPRIRYNPGLDAKLLYLPLA 291
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 298 bits (762), Expect = 8e-81
Identities = 143/282 (50%), Positives = 204/282 (72%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W +RQ+ ++++ DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ A QWVK +VG++GLWGL+NNAG L +WL E + ++
Sbjct: 76 RLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKA+GRI+NVSSI GR+AF G YS SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV V+ +EPG F+T ++D +K++E +WK + IK YG+ + + + +K S
Sbjct: 196 AFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTAS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+LV +CM+HALTS+ P+TRY+AG DA+ F+IPLS++
Sbjct: 256 FVNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHM 297
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 264 bits (675), Expect = 1e-70
Identities = 135/280 (48%), Positives = 189/280 (67%), Gaps = 1/280 (0%)
Frame = +2
Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460
R+RQ + D ++FITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQCLP-ASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640
T LLDVT +SI A +WV+ VG+ GL+GLVNNAG + T W E + L VN
Sbjct: 78 TTLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNT 137
Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820
+G VTL++LPL+ +A+GR++N++S+LGR+A G Y SK G+EAFSD LR ++ FG
Sbjct: 138 LGPIGVTLALLPLLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFG 197
Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSS-C 997
V+VSIVEPG+FRT +T+++ + ++ W +P + YG+ F Y V ++ ++ C
Sbjct: 198 VRVSIVEPGFFRTPVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMIC 257
Query: 998 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DPDLAKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 187 bits (474), Expect = 2e-47
Identities = 112/270 (41%), Positives = 160/270 (59%), Gaps = 12/270 (4%)
Frame = +2
Query: 296 VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLET 463
V +G K V ITGCDSGFG LA+ L G V A CL + G ++L SDRL T
Sbjct: 50 VDPVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRT 109
Query: 464 VLLDVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLK 631
V L+V K+E + A + ++ + D +GLWGLVNNAG TF + E+ ET+ +
Sbjct: 110 VQLNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTFGDV---EFTSMETYKEVAE 166
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 808
VNL G VT + LPL+++A+GR+VN+SS++GR+A + Y +K GVEAFSD LR E+
Sbjct: 167 VNLWGTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEM 226
Query: 809 QHFGVKVSIVEPGYFRTGMT---DVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979
GVKVS+VEPG F + ++ ++W+E+P ++ YG+K+FD M+
Sbjct: 227 HPLGVKVSVVEPGNFIAATSLYGGTERIQAIANKMWEELPEVVRQDYGRKYFDEKVARME 286
Query: 980 QGLSSCSTNLNLVTDCMEHALTSVHPRTRY 1069
+S ST+ + V + HALT+ P TRY
Sbjct: 287 SYCTSGSTDTSPVIKAVTHALTATTPYTRY 316
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 159 bits (403), Expect = 3e-39
Identities = 96/271 (35%), Positives = 152/271 (56%), Gaps = 4/271 (1%)
Frame = +2
Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSD 451
Y Q + + K V ITGCDSGFG+ LA+ LD G V A L EQG A++LR+ S
Sbjct: 72 YFSGQELLPVDQKAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSK 131
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
L + L++T T+ I AA VKE++ ++GLW ++NNAG E + + +
Sbjct: 132 NLSVLQLNITNTQEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMA 191
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 808
VN G EVT LPL++K++GR+VN+SS+ G V A Y SSK + FS +LR EL
Sbjct: 192 VNFFGAVEVTKVFLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQEL 251
Query: 809 QHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQ-VWKEVPAHIKDTYGQKFFDAYHDVMKQG 985
+GVKVS+++PG F+T ++ + E +++ V + +++ YGQ + + +
Sbjct: 252 SKWGVKVSVIQPGGFKTNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILSERSFLNLM 311
Query: 986 LSSCSTNLNLVTDCMEHALTSVHPRTRYSAG 1078
+S +++ V + HA+++ P Y+ G
Sbjct: 312 KTSTDPDISPVLLDVRHAISAQSPFAFYAPG 342
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 154 bits (389), Expect = 1e-37
Identities = 97/274 (35%), Positives = 142/274 (51%), Gaps = 4/274 (1%)
Frame = +2
Query: 320 VFITGCDSGFGNLLARQLDVRGLRVLAACL--TEQGAQQLRKQTSDRLETVLLDVTKTES 493
V ITGCDSGFGN A++LD G VLA L GA +LR S RL+ + +D+TK
Sbjct: 85 VLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPGALELRACCSSRLKLLQMDLTKPGD 144
Query: 494 IAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSML 673
I+ ++ K GLWGLVNNAG + E T+ ++VN G E+T +L
Sbjct: 145 ISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFFGALEMTKGLL 204
Query: 674 PLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGY 850
PL++++ GRIV VSS G + F A Y +SK + CEL +GVKVSI++P
Sbjct: 205 PLLRRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALALLMGNFSCELLPWGVKVSIIQPAC 264
Query: 851 FRT-GMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSCSTNLNLVTDC 1027
F+T + DV + E +Q+ +P + YG+ + + + LS +L+ V D
Sbjct: 265 FKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPDLSPVVDA 324
Query: 1028 MEHALTSVHPRTRYSAGWDAQFFFIPLSYLLHHW 1129
+ AL + P RY G + L Y +H++
Sbjct: 325 ITDALLAAQPLRRYYPGHG-----LGLIYFIHYY 353
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLA----ACLTEQGAQQLRK 439
+W R R +++ + V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 440 QTSDRLET-----VLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLK 604
+ ++T V D+ +IA A + + G + L+NNAG + I +
Sbjct: 99 SRAPEVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVD-TS 155
Query: 605 TETWIHTLKVNLIGVTEVTLSMLP-LVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVE 778
+ ++ N G +T ++LP ++++ QG +V +SSI G+++ F + Y++SKH +
Sbjct: 156 PDVDKRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 779 AFSDVLRCELQHFGVKVSIVEPGYFRTGMT 868
AF D LR E++ ++V+++ PGY T ++
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLS 245
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 84.3 bits (207), Expect = 2e-16
Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLA----ACLTEQGAQQLRK 439
+W R R +++ + V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 440 QTSDRLET-----VLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLK 604
+ ++T V D+ +IA A + + G + L+NNAG + I +
Sbjct: 99 SRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVD-TS 155
Query: 605 TETWIHTLKVNLIGVTEVTLSMLP-LVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVE 778
+ ++ N G +T ++LP ++++ QG +V +SSI G+++ F + Y++SKH +
Sbjct: 156 PDVDKRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 779 AFSDVLRCELQHFGVKVSIVEPGYFRTGMT 868
AF D LR E++ ++V+++ PGY T ++
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLS 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,423,165
Number of extensions: 1105311
Number of successful extensions: 4407
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4363
Number of HSP's successfully gapped: 43
Length of query: 382
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,240,222
Effective search space: 3958781716
Effective search space used: 3958781716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 474 e-134
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 463 e-130
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 379 e-105
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 371 e-103
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 315 7e-86
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 295 7e-80
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 275 6e-74
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 186 5e-47
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 154 2e-37
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 145 7e-35
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 474 bits (1219), Expect = e-134
Identities = 229/297 (77%), Positives = 254/297 (85%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+ERVGDRGLWGLVNNAG FHP C
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
+EWLK E ++ KVNL G+ EVTLSMLPL+++A+GRIVNVSSILGR+AFFG Y SSK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL+HFGVK+SIVEPGYFRTGMT V E +KQ W+EVP HIK+ YGQ
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KFFDA+H+ +KQGL CSTNLNLVTDCMEHALTSVHPRTRYSAGWD+QFFFIPLSYL
Sbjct: 241 KFFDAHHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYL 297
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 463 bits (1192), Expect = e-130
Identities = 227/303 (74%), Positives = 253/303 (83%), Gaps = 6/303 (1%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+ERVGDRGLWGLVNNAG FHP C
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
+EWLK E ++ KVNL G+ EVTLSMLPL+++A+GRIVNVSSILGR+AFFG Y SSK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL+HFGVK+SIVEPGYFRTGMT V E +KQ W+EVP HIK+ YGQ
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 947 KFFDAY------HDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPL 1108
KFF ++ H+ +KQGL CSTNLNLVTDCMEHALTSVHPRTRYSAGWD+QFFFIPL
Sbjct: 241 KFFASFLFLYTDHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPL 300
Query: 1109 SYL 1117
SYL
Sbjct: 301 SYL 303
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 1 [Canis familiaris].
Length = 317
Score = 379 bits (972), Expect = e-105
Identities = 183/297 (61%), Positives = 227/297 (76%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+E VGDRGLWGLVNNAG P
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+G+ EVTLS+L LV+KA+GR+VNVSSI+GR++ G Y SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPGYF T +T+ +K S ++ W + +++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+F + +++ S C TNL LVT+CMEHALT+ HPRTRYS GWDA+ ++P+SYL
Sbjct: 241 EFLASARKPIEKLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYL 297
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 2 [Canis familiaris].
Length = 319
Score = 371 bits (952), Expect = e-103
Identities = 184/302 (60%), Positives = 227/302 (75%), Gaps = 5/302 (1%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GAQQLR QTSDRL+TV+LDVTKTESI AATQWV+E VGDRGLWGLVNNAG P
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+G+ EVTLS+L LV+KA+GR+VNVSSI+GR++ G Y SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPGYF T +T+ +K S ++ W + +++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 947 KFFD-----AYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS 1111
+ A +++K S C TNL LVT+CMEHALT+ HPRTRYS GWDA+ ++P+S
Sbjct: 241 EHARTPGKLAVKELLK---SMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMS 297
Query: 1112 YL 1117
YL
Sbjct: 298 YL 299
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 315 bits (806), Expect = 7e-86
Identities = 155/282 (54%), Positives = 204/282 (72%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL+T LLDVT+TESI AATQWV+++VG++GLW LVNNAG P EWL E ++ +
Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL+G+ EVTL MLP+VKKA+GR+VN+SS GRVA G Y SK GVEAFSD +R EL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
+FGVKVSI+EPG +RT + + M+++W+ +P KD+YG+++F Y D +K +
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQ 251
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
S + VT+ MEHA+ S PR RY+ G DA+ ++PL+ L
Sbjct: 252 SAEPRIREVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKL 293
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
[Canis familiaris].
Length = 753
Score = 295 bits (754), Expect = 7e-80
Identities = 142/282 (50%), Positives = 201/282 (71%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE + L+ +TS+
Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 510 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL++LPLVKKA+GRI+NVSSI GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 570 VNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVEGFNDSLRRDMK 629
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV VS +EPG F+TG++D K++E +WK + IK YG+ + + D +K S
Sbjct: 630 AFGVHVSCIEPGLFKTGLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEKSLDKLKDTTS 689
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+LV +CM+HALTS+ P+TRY+AG DA+ F+IPLS++
Sbjct: 690 FVNVDLSLVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHM 731
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 275 bits (703), Expect = 6e-74
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Frame = +2
Query: 191 LPNKHFSGGPHTMWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQ 370
LP SG MW W R++Q + D +VFITGCDSGFG LLA +
Sbjct: 12 LPPAGHSGS--AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALR 68
Query: 371 LDVRGLRVLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWG 550
LD RG RVLA+CLT GA+ L++ S RL T LLDVT+ +S+ A +WV+ VG+ GL+G
Sbjct: 69 LDQRGFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFG 128
Query: 551 LVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGR 730
LVNNAG + T WL + + L VN +G VTL++LPL+++++GR+VN+SS+LGR
Sbjct: 129 LVNNAGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGR 188
Query: 731 VAFFGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWK 910
+A G Y SK G+EAFSD LR ++ HFGV+VSIVEPG+FRT +T+++ +++ W
Sbjct: 189 LAANGGGYCVSKFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRTPVTNLEHLENTLQECWA 248
Query: 911 EVPAHIKDTYGQKFFDAYHDVMKQGLS-SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDA 1087
+P + YG+ F Y V + +S C +L V+ C+EHALT+ +PRTRYS GWDA
Sbjct: 249 RLPPSTQAHYGEAFLPKYLQVQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDA 308
Query: 1088 QFFFIPLSYL 1117
+ ++P SYL
Sbjct: 309 KLLWLPASYL 318
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 186 bits (471), Expect = 5e-47
Identities = 111/270 (41%), Positives = 163/270 (60%), Gaps = 11/270 (4%)
Frame = +2
Query: 293 MVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLE 460
++ +G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL
Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64
Query: 461 TVLLDVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTL 628
T+ L+V K E + + V+ + D +G+WGLVNNAG TF + E+ ET+
Sbjct: 65 TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFGEV---EFTSMETYKEVA 121
Query: 629 KVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCE 805
+VNL G ++T + LPL+++A+GRIVN+SS+LGR+A + Y +K GVEAFSD LR E
Sbjct: 122 EVNLWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYE 181
Query: 806 LQHFGVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMK 979
+ GVKVS+VEPG F T + + ++ ++W E+P ++ YG+K+FD M+
Sbjct: 182 MYPLGVKVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQ 241
Query: 980 QGLSSCSTNLNLVTDCMEHALTSVHPRTRY 1069
+S ST+++ V + HALTS P TRY
Sbjct: 242 AYCNSGSTDISPVVSAVTHALTSRSPYTRY 271
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis
familiaris].
Length = 382
Score = 154 bits (388), Expect = 2e-37
Identities = 98/284 (34%), Positives = 154/284 (54%), Gaps = 6/284 (2%)
Frame = +2
Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSD 451
Y Q + + K V ITG DSGFG+ L++ LD G V L E+G A++LR+ S
Sbjct: 72 YLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSK 131
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL + +D+T + I A V E++ DRGLW +VNNAG E + + +
Sbjct: 132 RLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMA 191
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDVLRCEL 808
VN G EVT + LPL++K++GR+VN+SS+ V A YSSSK + FS V+R EL
Sbjct: 192 VNFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQEL 251
Query: 809 QHFGVKVSIVEPGYFRTGMTDVQKS-SEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQG 985
+GVKVS+++PG FRT + + S+ K + + + +++ YG+ + + +K
Sbjct: 252 SKWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSI 311
Query: 986 LSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQ--FFFIPLS 1111
+T+++ V + HA+++ P Y+ G A FF+ S
Sbjct: 312 NIKTNTDISPVLQDIRHAVSAKSPFAFYAPGALAYCLLFFVSFS 355
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2
(11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 145 bits (366), Expect = 7e-35
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 4/269 (1%)
Frame = +2
Query: 335 CDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKTESIAAAT 508
CDSGFG A++LD G VLA L G A +LR S RL + +D+TK I+ A
Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67
Query: 509 QWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKK 688
++ K GLWGLVNNAG + E T+ ++VN G E+T +LPL+++
Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127
Query: 689 AQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRT-G 862
++GRIV V S G + + A Y +SK + D CEL +GVKVS+++PG F+T
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187
Query: 863 MTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHAL 1042
+ +V + + + +P + YG+ + + H L +L+ V D + AL
Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDAL 247
Query: 1043 TSVHPRTRYSAGWDAQFFFIPLSYLLHHW 1129
+ PR RY G + L Y +H++
Sbjct: 248 LAAQPRRRYYPGRG-----LGLMYFIHYY 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,029,184
Number of extensions: 1124118
Number of successful extensions: 4595
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4554
Number of HSP's successfully gapped: 43
Length of query: 382
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 277
Effective length of database: 15,374,224
Effective search space: 4258660048
Effective search space used: 4258660048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 pre... 461 e-130
Alignment gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens]. 363 e-100
Alignment gi|NP_683695.1| short-chain dehydrogenase/reductase family 9C m... 298 5e-81
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 286 2e-77
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre... 286 2e-77
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 286 2e-77
Alignment gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 pre... 286 2e-77
Alignment gi|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens]. 263 2e-70
Alignment gi|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens]. 263 2e-70
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 189 4e-48
>ref|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens].
Length = 317
Score = 461 bits (1186), Expect = e-130
Identities = 226/297 (76%), Positives = 253/297 (85%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW WYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA+QLR QTSDRLETV LDVTK ESIAAATQWVKE VGDRGLWGLVNNAG P+
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
+ EWL TE ++ LKVNLIGV +VTLSMLPLV++A+GRIVNVSSILGRVAFF Y SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD+LR E+QHFGVK+SIVEPGYFRTGMT++ +S E MKQ WKE P HIK+TYGQ
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
++FDA +++MK+GL +CSTNLNLVTDCMEHALTSVHPRTRYSAGWDA+FFFIPLSYL
Sbjct: 241 QYFDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYL 297
>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
Length = 317
Score = 363 bits (933), Expect = e-100
Identities = 176/297 (59%), Positives = 222/297 (74%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW WYRERQ++SHL DKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA+QLR QTSDRLETV LDVTKTES+AAA QWVKE V D+GLWGLVNNAG P
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
E L + ++ L VNL+GV +VTLS+LPLV++A+GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNELLTKQDFVTILDVNLLGVIDVTLSLLPLVRRARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPGYF+T +T ++ ++ ++W +K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KF Y +Q C+ +L+LVT+CMEHAL + HPRTRYSAGWDA+ ++P+SY+
Sbjct: 241 KFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYM 297
>ref|NP_683695.1| short-chain dehydrogenase/reductase family 9C member 7 [Homo
sapiens].
Length = 313
Score = 298 bits (764), Expect = 5e-81
Identities = 145/282 (51%), Positives = 200/282 (70%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS
Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL+T LLDVTK+ESI AA QWV+++VG++GLW LVNNAG P EWL + ++ +
Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL+G+ EVTL MLP+VK+A+GR+VN+SS GRVA G Y SK GVEAFSD +R EL
Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
+FGVKV I+EPG +RT + + M+++W+ +P +D+YG+ +F Y D +K +
Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQ 251
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ V + MEHA+ S PR RY+ G DA+ +IPL+ L
Sbjct: 252 VAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKL 293
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 286 bits (733), Expect = 2e-77
Identities = 139/282 (49%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 286 bits (733), Expect = 2e-77
Identities = 139/282 (49%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 286 bits (733), Expect = 2e-77
Identities = 139/282 (49%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297
>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 286 bits (733), Expect = 2e-77
Identities = 139/282 (49%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKAQGR++NVSS+ GR+A G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV VS +EPG F+T + D K E +W+++ IK YG+ + + D +K S
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+ V +CM+HALTS+ P+T Y+AG DA+ F+IPLS++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHM 297
>ref|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 263 bits (672), Expect = 2e-70
Identities = 132/280 (47%), Positives = 190/280 (67%), Gaps = 1/280 (0%)
Frame = +2
Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640
T LLD+T +S+ A +WV+ V + GL+GLVNNAG + T WL + + L VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820
+G VTL++LPL+++A+GR++N++S+LGR+A G Y SK G+EAFSD LR ++ HFG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS-SC 997
++VSIVEPG+FRT +T+++ + ++ W +P + YG F Y + ++ ++ C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 998 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
>ref|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 263 bits (672), Expect = 2e-70
Identities = 132/280 (47%), Positives = 190/280 (67%), Gaps = 1/280 (0%)
Frame = +2
Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640
T LLD+T +S+ A +WV+ V + GL+GLVNNAG + T WL + + L VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820
+G VTL++LPL+++A+GR++N++S+LGR+A G Y SK G+EAFSD LR ++ HFG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS-SC 997
++VSIVEPG+FRT +T+++ + ++ W +P + YG F Y + ++ ++ C
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 998 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 189 bits (480), Expect = 4e-48
Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 11/266 (4%)
Frame = +2
Query: 305 LGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLL 472
+G K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L
Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112
Query: 473 DVTKTESIAAATQWVKERVGD--RGLWGLVNNAG--TFHPLCITEWLKTETWIHTLKVNL 640
+V +E + + V+ + D +G+WGLVNNAG TF + E+ ET+ +VNL
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEV---EFTSLETYKQVAEVNL 169
Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHF 817
G +T S LPL+++A+GR+VN+SS+LGR+A + Y +K GVEAFSD LR E+
Sbjct: 170 WGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPL 229
Query: 818 GVKVSIVEPGYF--RTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
GVKVS+VEPG F T + + K++W+E+P ++ YG+K+FD M+ S
Sbjct: 230 GVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCS 289
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRY 1069
S ST+ + V D + HALT+ P TRY
Sbjct: 290 SGSTDTSPVIDAVTHALTATTPYTRY 315
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,440,573
Number of extensions: 1120787
Number of successful extensions: 4361
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4309
Number of HSP's successfully gapped: 42
Length of query: 382
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 278
Effective length of database: 14,868,908
Effective search space: 4133556424
Effective search space used: 4133556424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mu... 425 e-119
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 380 e-105
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]. 377 e-105
Alignment gi|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus]. 377 e-105
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 374 e-104
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]. 372 e-103
Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]. 370 e-102
Alignment gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de... 360 1e-99
Alignment gi|NP_081577.1| short-chain dehydrogenase/reductase family 9C m... 296 3e-80
Alignment gi|NP_780721.1| dehydrogenase/reductase SDR family member 9 pre... 293 1e-79
>ref|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus].
Length = 317
Score = 425 bits (1093), Expect = e-119
Identities = 209/297 (70%), Positives = 239/297 (80%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVGDRGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EW + E ++ +VNLIG+T+VT+SML LVKKA+GRIVNVSS LGRVA FG YS SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSDVLR E+Q FGVKVSI+EPG F+T MTD + + E K+VW+ P HIK++YGQ
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+FFD + K+ L CS NL+LVTDCMEHALTS HPRTRYSAGWDA+FFFIPLSYL
Sbjct: 241 QFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYL 297
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 380 bits (975), Expect = e-105
Identities = 186/297 (62%), Positives = 230/297 (77%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GR++FFG Y SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+I+EPG F+T +T + S K +W + + +K+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KF Y + + C+ +L++VTDCMEHALT+ HPRTRYSAGWDA+F F+PLSYL
Sbjct: 241 KFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKFLFLPLSYL 297
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 377 bits (969), Expect = e-105
Identities = 183/297 (61%), Positives = 234/297 (78%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA+QLR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
I EWLK E + + L VNL+G+ EVTLSMLPLV+KA+GR+VN+SS +GRV+ G Y SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR E+ +FGVKV+I+EPG FRT +++ ++ S +++++W + + +K+ Y +
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F D+Y ++ +CS +L++VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSY+
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYM 296
>ref|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 377 bits (969), Expect = e-105
Identities = 183/297 (61%), Positives = 234/297 (78%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA+QLR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
I EWLK E + + L VNL+G+ EVTLSMLPLV+KA+GR+VN+SS +GRV+ G Y SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR E+ +FGVKV+I+EPG FRT +++ ++ S +++++W + + +K+ Y +
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F D+Y ++ +CS +L++VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSY+
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYM 296
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 374 bits (961), Expect = e-104
Identities = 185/298 (62%), Positives = 230/298 (77%), Gaps = 1/298 (0%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++RERQ+VSHL DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVSLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA++LR +TSDRLETV+LDVTKTESI AATQWVKERVG+RGLWGLVNNAG PL
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSS 763
+++W+ + + L VNL+G+ EVTL+MLPLV+KA+GR+VNVSSI+GRV+ G Y S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180
Query: 764 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 943
K+GVEAFSD LR EL +FGVKV+I+EPG+F TGM + S + +W + + I++ YG
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240
Query: 944 QKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+K+ Y + + C+ +L+LVTDCMEHALT+ HPRTRYSAGWDA+ FFIPLSYL
Sbjct: 241 EKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYL 298
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
Length = 317
Score = 372 bits (954), Expect = e-103
Identities = 178/281 (63%), Positives = 226/281 (80%)
Frame = +2
Query: 275 WYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDR 454
++RERQ+VS+L DKYVFITGCDSGFGNLLARQLD RG+RVLAACLTE+GA++LR +TSDR
Sbjct: 17 FFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELRNKTSDR 76
Query: 455 LETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKV 634
LETV+LDVTKTESI ATQWVKERVG+RGLWGLVNNAG P EW+K + + H L V
Sbjct: 77 LETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDV 136
Query: 635 NLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQH 814
NL+G+ EVTLSMLPLV+KA+GR++NV+S+LGRV+ G Y SK+GVEAFSD LR EL +
Sbjct: 137 NLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISKYGVEAFSDSLRRELSY 196
Query: 815 FGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSS 994
FGVKV+I+EPG+F TG+T + + +W + + I++ YG+K+ +Y + +
Sbjct: 197 FGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKR 256
Query: 995 CSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
C+ +L+LVTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL
Sbjct: 257 CNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297
>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].
Length = 317
Score = 370 bits (949), Expect = e-102
Identities = 180/297 (60%), Positives = 226/297 (76%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++R RQ+VSHL DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTE+GA++LR +TSDRLETV+LDVTKTESI ATQWVKE VG+RGLWGLVNNAG P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EW+K + + H L VNL+G+ EVTLSMLPLV+KA+GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+I+EPG+F TG+T + + +W + + I++ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
K+ +Y + + C+ +L+ VTDCMEHALT+ HPRTRYSAGWDA+ F++PLSYL
Sbjct: 241 KYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYL 297
>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus
musculus].
Length = 318
Score = 360 bits (924), Expect = 1e-99
Identities = 178/298 (59%), Positives = 227/298 (76%), Gaps = 1/298 (0%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW R++RERQ+V HL DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
E+GA++LR++TS+RLETV+LDVTKTE+I AATQWVKERVG+RGLWGLVNNAG P
Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGA-VYSSS 763
EW+K + + L VNL+G+ EVTLSMLPLV+KA+GR+VNVSSILGRV+ G+ Y S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180
Query: 764 KHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYG 943
K+G+EAFSD LR EL++FGVKV+I+EPG+F TGM + ++ +W + + I++ YG
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240
Query: 944 QKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+K+ +Y + + C+ +L++VTDCMEHALT+ HPRTRYSAGWDA+ FF PLSYL
Sbjct: 241 EKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYL 298
>ref|NP_081577.1| short-chain dehydrogenase/reductase family 9C member 7 [Mus
musculus].
Length = 313
Score = 296 bits (757), Expect = 3e-80
Identities = 141/282 (50%), Positives = 201/282 (71%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
RW++ +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS
Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
+L+T LLDVTK+E++ A QWV+++VG++GLW LVNNAG P EWL + ++ +
Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
+NL+G+ +VTL+MLP++KKA+GR+VN+SS GRVA FG Y SK GVEAFSD +R EL
Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGVKVSI+EPG ++T + + MK++W +P +D+YG+++F Y + +
Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMR 251
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
S ++ VT+ MEHA+ S PR RY+ G D +F ++ L+ L
Sbjct: 252 SAEPRISDVTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKL 293
>ref|NP_780721.1| dehydrogenase/reductase SDR family member 9 precursor [Mus musculus].
Length = 319
Score = 293 bits (751), Expect = 1e-79
Identities = 142/280 (50%), Positives = 197/280 (70%)
Frame = +2
Query: 278 YRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRL 457
Y+ + ++ + DKYVFITGCD+GFGNL AR D +G RV+AACLTE G+ L+ +TS+RL
Sbjct: 18 YKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTESGSAALKAKTSERL 77
Query: 458 ETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVN 637
TVLLDVT E++ QWVK VG++GLWGL+NNAG L T+WL + + ++VN
Sbjct: 78 HTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVN 137
Query: 638 LIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHF 817
L G+ VTL+MLPLVKKA+GR++NVSSI GR+AF G Y+ SK+ VE F+D LR +++ F
Sbjct: 138 LFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSKYAVEGFNDSLRRDMKAF 197
Query: 818 GVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSC 997
GV VS +EPG F+T + D K++E +WK + IK YG+ + + +K SS
Sbjct: 198 GVHVSCIEPGLFKTELADPIKTTEKKLAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSV 257
Query: 998 STNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+LV CM+HALTS+ P+TRY AG DA+ F+IPLS++
Sbjct: 258 NLDLSLVVGCMDHALTSLFPKTRYIAGKDAKTFWIPLSHM 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,107,973
Number of extensions: 953445
Number of successful extensions: 3637
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3593
Number of HSP's successfully gapped: 41
Length of query: 382
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 279
Effective length of database: 12,523,851
Effective search space: 3494154429
Effective search space used: 3494154429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 588 e-168
Alignment gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 575 e-164
Alignment gi|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Su... 382 e-106
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 382 e-106
Alignment gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso... 380 e-105
Alignment gi|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like iso... 380 e-105
Alignment gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta... 309 2e-84
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 292 2e-79
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 261 7e-70
Alignment gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil... 243 1e-64
>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2
[Sus scrofa].
Length = 337
Score = 588 bits (1515), Expect = e-168
Identities = 289/302 (95%), Positives = 289/302 (95%)
Frame = +2
Query: 212 GGPHTMWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLR 391
GGPHTMW RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLR
Sbjct: 16 GGPHTMWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLR 75
Query: 392 VLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGT 571
VLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGT
Sbjct: 76 VLAACLTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGT 135
Query: 572 FHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAV 751
FHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAV
Sbjct: 136 FHPLCITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAV 195
Query: 752 YSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIK 931
YSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIK
Sbjct: 196 YSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIK 255
Query: 932 DTYGQKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS 1111
DTYGQKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS
Sbjct: 256 DTYGQKFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLS 315
Query: 1112 YL 1117
YL
Sbjct: 316 YL 317
>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 1
[Sus scrofa].
Length = 317
Score = 575 bits (1483), Expect = e-164
Identities = 284/297 (95%), Positives = 284/297 (95%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC
Sbjct: 1 MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK
Sbjct: 121 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ
Sbjct: 181 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL
Sbjct: 241 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 297
>ref|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Sus scrofa].
Length = 317
Score = 382 bits (980), Expect = e-106
Identities = 190/300 (63%), Positives = 230/300 (76%), Gaps = 3/300 (1%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG PL
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICTPLA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
+EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PSEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPG+F T MT + + ++ W++ +KD YG
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 240
Query: 947 KF---FDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F F +D++K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 241 AFVANFMKTYDLLK---PQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 297
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 382 bits (980), Expect = e-106
Identities = 187/297 (62%), Positives = 224/297 (75%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWVYLAVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPG+F+T +T + S+ K W + IKD YG
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 240
Query: 947 KFFDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F + +SC+ +L+LVTDCMEHALTS HPRTRYS GWDA+ F++P+SYL
Sbjct: 241 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAKLFYLPMSYL 297
>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 380 bits (975), Expect = e-105
Identities = 190/300 (63%), Positives = 228/300 (76%), Gaps = 3/300 (1%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG PL
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPG+F T MT + ++ W++ +KD YG
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 947 KF---FDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F F +D++K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 241 AFVANFMKTYDLLK---PQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 297
>ref|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
Length = 317
Score = 380 bits (975), Expect = e-105
Identities = 190/300 (63%), Positives = 228/300 (76%), Gaps = 3/300 (1%)
Frame = +2
Query: 227 MWXXXXXXXXXXXXXRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 406
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 407 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 586
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG PL
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 587 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 766
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 767 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 946
+GVEAFSD LR EL +FGVKV+++EPG+F T MT + ++ W++ +KD YG
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 947 KF---FDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
F F +D++K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 241 AFVANFMKTYDLLK---PQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 297
>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
7-like [Sus scrofa].
Length = 313
Score = 309 bits (791), Expect = 2e-84
Identities = 153/282 (54%), Positives = 201/282 (71%)
Frame = +2
Query: 272 RWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
RW++ +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWFKNCNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTEEGAQKLQQDTSY 71
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL+T LLDVTKTESI AA QWV+++V ++GLW LVNNAG P EWL E ++ +
Sbjct: 72 RLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL+G+ EVTL MLP+VKKA+GR+VN+SS GRVA G Y SK GVEAFSD +R EL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
+FGVKVSI+EPG +RT + + M+++W +P +D+YG+++F Y D +K +
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKESLEMRMRKMWARLPQETRDSYGEEYFHIYTDKLKNMMQ 251
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ VT+ MEHA+ S PR RY+ G DA+ +IPL+ L
Sbjct: 252 LAEPRIRDVTNSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKL 293
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform 1
[Sus scrofa].
Length = 319
Score = 292 bits (748), Expect = 2e-79
Identities = 140/282 (49%), Positives = 200/282 (70%), Gaps = 1/282 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKA+GR++NVSSI GR+AF G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLS 991
FGV V+ +EPG F+TG+ D K++E +W + I+ YG+ + + +K S
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKS 255
Query: 992 SCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+ +L+LV +CM+HALTS+ P+TRY+AG DA+ F+IPLS++
Sbjct: 256 FMNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHM 297
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 261 bits (666), Expect = 7e-70
Identities = 137/280 (48%), Positives = 186/280 (66%), Gaps = 1/280 (0%)
Frame = +2
Query: 281 RERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSDRLE 460
R+RQ + D +VFITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-TSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 461 TVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNL 640
T LLDVT +SI A +WV+ VG+ GL+GLVNNAG + T W E + L VN
Sbjct: 78 TTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNT 137
Query: 641 IGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQHFG 820
+G VTL++LPL+++A+GR+VNVSS+LGR+A G Y SK GVEAFSD LR ++ FG
Sbjct: 138 LGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFG 197
Query: 821 VKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAYHDVMKQGLSSCS 1000
++VSIVEPG+F+T +T+ + +K W +P + YG+ + Y + ++ S
Sbjct: 198 IRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLS 257
Query: 1001 -TNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 1117
+L V+ C+EHALT+ HPRTRYS GWDA+ ++P SYL
Sbjct: 258 DLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYL 297
>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
partial [Sus scrofa].
Length = 245
Score = 243 bits (621), Expect = 1e-64
Identities = 115/229 (50%), Positives = 162/229 (70%), Gaps = 1/229 (0%)
Frame = +2
Query: 275 WYRERQM-VSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQGAQQLRKQTSD 451
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 452 RLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLK 631
RL TVLLDVT E++ QWVK +VG++GLWGL+NNAG L T+WL E + ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 632 VNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSKHGVEAFSDVLRCELQ 811
VNL G+ VTL+MLPLVKKA+GR++NVSSI GR+AF G Y+ SK+ VE F+D LR +++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 812 HFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFD 958
FGV V+ +EPG F+TG+ D K++E +W + I+ YG+ + +
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYIE 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,262,117
Number of extensions: 706578
Number of successful extensions: 2835
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 2795
Number of HSP's successfully gapped: 38
Length of query: 382
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 281
Effective length of database: 8,829,335
Effective search space: 2481043135
Effective search space used: 2481043135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007165
(1146 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 630 e-178
>Sscrofa_Chr05
|| Length = 111506441
Score = 630 bits (318), Expect = e-178
Identities = 327/330 (99%)
Strand = Plus / Minus
Query: 211 aggaggcccccataccatgtggctgtacctggctgtcctcgtgggcctgtactacctcct 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785650 aggaggcccccataccatgtggctgtacctggctgtcctcgtgggcctgtactacctcct 23785591
Query: 271 tcgctggtaccgggaaaggcagatggttagccaccttggggataagtatgtcttcatcac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785590 tcgctggtaccgggaaaggcagatggttagccaccttggggataagtatgtcttcatcac 23785531
Query: 331 gggctgtgactcgggctttgggaacctgctggcgaggcagctggatgtgaggggcttgag 390
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23785530 gggctgtgactcgggcttcgggaacctgctggccaggcagctggatgtgaggggcttgag 23785471
Query: 391 ggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgtcaga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785470 ggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgtcaga 23785411
Query: 451 caggctggagacggtgctcttggacgtgaccaagacagagagcattgctgcggccaccca 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 23785410 caggctggagacggtgctcttggacgtgaccaagacagagagcattgctgcagccaccca 23785351
Query: 511 gtgggtgaaggagcgtgtcggggacagagg 540
||||||||||||||||||||||||||||||
Sbjct: 23785350 gtgggtgaaggagcgtgtcggggacagagg 23785321
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 538 aggactctggggtctggtcaacaatgcaggcacttttcacccactgtgcatcactgagtg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782352 aggactctggggtctggtcaacaatgcaggcacttttcacccactgtgcatcactgagtg 23782293
Query: 598 gctgaagactgagacctggatacataccctcaaagtgaacctcattggtgtgacagaggt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782292 gctgaagactgagacctggatacataccctcaaagtgaacctcattggtgtgacagaggt 23782233
Query: 658 gaccttgagcatgcttcccttggtgaagaaagcacaggggagaattgtcaatgtctccag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782232 gaccttgagcatgcttcccttggtgaagaaagcacaggggagaattgtcaatgtctccag 23782173
Query: 718 cattctgggaagagttgctttctttggagcagtctactctagctccaagcatggagtgga 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782172 cattctgggaagagttgctttctttggagcagtctactctagctccaagcatggagtgga 23782113
Query: 778 agccttttcagatgtcctgag 798
|||||||||||||||||||||
Sbjct: 23782112 agccttttcagatgtcctgag 23782092
Score = 444 bits (224), Expect = e-122
Identities = 293/316 (92%)
Strand = Plus / Plus
Query: 225 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 284
|||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 24089441 ccatgtggctgtacctggtggtcctcgtgggcctgtactacctcctgcgctggcagcggg 24089500
Query: 285 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 344
| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 24089501 agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 24089560
Query: 345 gctttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcat 404
|||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24089561 gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 24089620
Query: 405 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089621 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 24089680
Query: 465 tgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagc 524
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 24089681 tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 24089740
Query: 525 gtgtcggggacagagg 540
|||| |||||||||||
Sbjct: 24089741 gtgtgggggacagagg 24089756
Score = 444 bits (224), Expect = e-122
Identities = 293/316 (92%)
Strand = Plus / Plus
Query: 225 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 284
|||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 24100741 ccatgtggctgtacctggtggtcctcgtgggcctgtactacctcctgcgctggcagcggg 24100800
Query: 285 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 344
| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 24100801 agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 24100860
Query: 345 gctttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcat 404
|||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24100861 gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 24100920
Query: 405 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100921 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 24100980
Query: 465 tgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagc 524
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 24100981 tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 24101040
Query: 525 gtgtcggggacagagg 540
|||| |||||||||||
Sbjct: 24101041 gtgtgggggacagagg 24101056
Score = 444 bits (224), Expect = e-122
Identities = 293/316 (92%)
Strand = Plus / Minus
Query: 225 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 284
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 24139005 ccatgtgggtgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcggg 24138946
Query: 285 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 344
| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 24138945 agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 24138886
Query: 345 gctttgggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcat 404
|||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24138885 gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 24138826
Query: 405 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138825 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 24138766
Query: 465 tgctcttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagc 524
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 24138765 tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 24138706
Query: 525 gtgtcggggacagagg 540
|||| |||||||||||
Sbjct: 24138705 gtgtgggggacagagg 24138690
Score = 418 bits (211), Expect = e-114
Identities = 286/311 (91%)
Strand = Plus / Minus
Query: 230 tggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccgggaaagg 289
|||||||||||||| |||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct: 24131803 tggctgtacctggcagtcctcgtgggcctgtactacctcctgcgctggcagcgggagagg 24131744
Query: 290 cagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgggcttt 349
||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 24131743 caggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttc 24131684
Query: 350 gggaacctgctggcgaggcagctggatgtgaggggcttgagggtcctggctgcatgtctg 409
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 24131683 gggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctg 24131624
Query: 410 acggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131623 acggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctc 24131564
Query: 470 ttggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagcgtgtc 529
||||||||||||||||||||||| | ||||| |||| |||||||||||||| |||
Sbjct: 24131563 ctggacgtgaccaagacagagagcgtcgctgcagccaaggagtgggtgaaggagtatgtg 24131504
Query: 530 ggggacagagg 540
|||||||||||
Sbjct: 24131503 ggggacagagg 24131493
Score = 351 bits (177), Expect = 5e-94
Identities = 184/185 (99%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 963 atcacgatgttatgaaacaagggctgtctagttgtagcacaaacctgaacctggtcacgg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23776952 atcacgatgttatgaaacaagggctgtctagttgtagcacaaacctgaacctggtcacgg 23776893
Query: 1023 actgcatggaacacgctctgacatctgtgcatccccgcactcggtactcagctggctggg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23776892 actgcatggaacacgctctgacatctgtgcatccccgcactcggtactcagctggctggg 23776833
Query: 1083 atgctcaatttttcttcatccctctgtcttattta-ctacatcactggcagactacatac 1141
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23776832 atgctcaatttttcttcatccctctgtcttatttacctacatcactggcagactacatac 23776773
Query: 1142 tgact 1146
|||||
Sbjct: 23776772 tgact 23776768
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 797 agatgtgagcttcagcattttggggtgaaagtcagcatagttgaacctggttacttcaga 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23778345 agatgtgagcttcagcattttggggtgaaagtcagcatagttgaacctggttacttcaga 23778286
Query: 857 acaggaatgacagatgtgcagaagtcctcagaggcaatgaagcaagtctggaaagaagtc 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23778285 acaggaatgacagatgtgcagaagtcctcagaggcaatgaagcaagtctggaaagaagtc 23778226
Query: 917 cctgctcatattaaggacacctatggacagaagttttttgatgcct 962
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23778225 cctgctcatattaaggacacctatggacagaagttttttgatgcct 23778180
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 54 agacccacgtggccagtaaacaaaggtttcatagtctcagtatttccttctcacttgtta 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23798080 agacccacgtggccagtaaacaaaggtttcatagtctcagtatttccttctcacttgtta 23798021
Query: 114 catttctaatcctttggagaacagagaagtaaaattcaaaggcagttaaatcagaagtgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23798020 catttctaatcctttggagaacagagaagtaaaattcaaaggcagttaaatcagaagtgt 23797961
Query: 174 ttgaaatctgacatctactcccaaacaagcatttctcagg 213
||||||||||||||||||||||||||||||||||||||||
Sbjct: 23797960 ttgaaatctgacatctactcccaaacaagcatttctcagg 23797921
Score = 295 bits (149), Expect = 3e-77
Identities = 215/237 (90%)
Strand = Plus / Minus
Query: 304 ccttggggataagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggc 363
||||| ||| || ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 23894212 ccttgaggacaaatatgtcttcatcacgggctgtgacttaggctttgggaatctgctggc 23894153
Query: 364 gaggcagctggatgtgaggggcttgagggtcctggctgcatgtctgacggagcagggggc 423
||||||||||| || ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 23894152 caggcagctggacctgcggggcttgaaggtcctggctgcatgtctgacagagcagggggc 23894093
Query: 424 ccagcagctgaggaagcagacgtcagacaggctggagacggtgctcttggacgtgaccaa 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 23894092 ccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaa 23894033
Query: 484 gacagagagcattgctgcggccacccagtgggtgaaggagcgtgtcggggacagagg 540
|||||||||| ||| ||| ||||| ||||||| ||||||| ||| || ||||||||
Sbjct: 23894032 gacagagagcgttgttgcagccactcagtgggaaaaggagcatgtgggagacagagg 23893976
Score = 200 bits (101), Expect = 1e-48
Identities = 122/129 (94%)
Strand = Plus / Plus
Query: 412 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctctt 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24097806 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 24097865
Query: 472 ggacgtgaccaagacagagagcattgctgcggccacccagtgggtgaaggagcgtgtcgg 531
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||
Sbjct: 24097866 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 24097925
Query: 532 ggacagagg 540
|||||||||
Sbjct: 24097926 ggacagagg 24097934
Score = 180 bits (91), Expect = 1e-42
Identities = 136/151 (90%)
Strand = Plus / Plus
Query: 225 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 284
|||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 24097648 ccatgtggctgtacctggtggtcctcgtgggcctgtactacctcctgcgctggcagcggg 24097707
Query: 285 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 344
| |||||| |||| |||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct: 24097708 agaggcaggtggtgagccacctgagggacaagtatgtcctcatcacgggctgtgactcgg 24097767
Query: 345 gctttgggaacctgctggcgaggcagctgga 375
||| |||||||||||||| |||||||||||
Sbjct: 24097768 ccttcgggaacctgctggccaggcagctgga 24097798
Score = 89.7 bits (45), Expect = 3e-15
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 314 aagtatgtcttcatcacgggctgtgactcgggctttgggaacctgctggcgaggcagctg 373
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 24125267 aagtatgtctttatcacgggctgtgactcgggctttggaaacctcctggccaggcagctg 24125208
Query: 374 g 374
|
Sbjct: 24125207 g 24125207
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 1 ctgtgagtgaactatttgaagtggaagtggtgaaatcttatcc 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23798151 ctgtgagtgaactatttgaagtggaagtggtgaaatcttatcc 23798109
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,652,381
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 14
Length of query: 1146
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1125
Effective length of database: 2,808,413,156
Effective search space: 3159464800500
Effective search space used: 3159464800500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)