Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192476.1| ganglioside GM2 activator [Bos taurus]. 268 9e-72
Alignment gi|XP_002689357.1| PREDICTED: GM2 activator protein-like [Bos t... 268 9e-72
>ref|NP_001192476.1| ganglioside GM2 activator [Bos taurus].
Length = 193
Score = 268 bits (684), Expect = 9e-72
Identities = 117/160 (73%), Positives = 139/160 (86%)
Frame = +1
Query: 274 FSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVAGF 453
FSW NCD GKDPAVINSLT++PDPIAIPGNL ++AE +TS +L+DPLKVELTVEK +AGF
Sbjct: 34 FSWNNCDAGKDPAVINSLTVEPDPIAIPGNLTITAEAKTSAILSDPLKVELTVEKHIAGF 93
Query: 454 WVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESEFI 633
WV IPCV+ +GSCTYDN C+ILE+LIP+E+ CPEPLHTYGLPCHCPFK G YSLP+S+F+
Sbjct: 94 WVKIPCVDNIGSCTYDNFCNILEMLIPIEEPCPEPLHTYGLPCHCPFKEGAYSLPKSDFM 153
Query: 634 LPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
LP LELP WLS+GNYR+Q I+S++ K L C IS SLKGK
Sbjct: 154 LPDLELPSWLSTGNYRLQTILSNSAKRLACVNISASLKGK 193
>ref|XP_002689357.1| PREDICTED: GM2 activator protein-like [Bos taurus].
Length = 193
Score = 268 bits (684), Expect = 9e-72
Identities = 117/160 (73%), Positives = 139/160 (86%)
Frame = +1
Query: 274 FSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVAGF 453
FSW NCD GKDPAVINSLT++PDPIAIPGNL ++AE +TS +L+DPLKVELTVEK +AGF
Sbjct: 34 FSWNNCDAGKDPAVINSLTVEPDPIAIPGNLTITAEAKTSAILSDPLKVELTVEKHIAGF 93
Query: 454 WVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESEFI 633
WV IPCV+ +GSCTYDN C+ILE+LIP+E+ CPEPLHTYGLPCHCPFK G YSLP+S+F+
Sbjct: 94 WVKIPCVDNIGSCTYDNFCNILEMLIPIEEPCPEPLHTYGLPCHCPFKEGAYSLPKSDFM 153
Query: 634 LPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
LP LELP WLS+GNYR+Q I+S++ K L C IS SLKGK
Sbjct: 154 LPDLELPSWLSTGNYRLQTILSNSAKRLACVNISASLKGK 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,622,388
Number of extensions: 1471736
Number of successful extensions: 5070
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5057
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536462.1| PREDICTED: similar to GM2 ganglioside activator... 239 3e-63
>ref|XP_536462.1| PREDICTED: similar to GM2 ganglioside activator protein [Canis
familiaris].
Length = 196
Score = 239 bits (611), Expect = 3e-63
Identities = 106/160 (66%), Positives = 124/160 (77%)
Frame = +1
Query: 274 FSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVAGF 453
F W NCD KDP + SL+L PDP+ PGN+ EVRTSV LNDP KVE+ VEKE+AGF
Sbjct: 37 FFWNNCDRAKDPVLFRSLSLLPDPVLFPGNMTFGFEVRTSVPLNDPQKVEIIVEKELAGF 96
Query: 454 WVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESEFI 633
WV +PCVE++GSCTY++IC +L+ IP CPEPLHTYGLPCHCP KAG YSLP ++FI
Sbjct: 97 WVKVPCVEELGSCTYEDICQVLDTFIPPGQPCPEPLHTYGLPCHCPIKAGIYSLPRTDFI 156
Query: 634 LPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
LP +ELP WLS G+YRIQGI+SS GK LGC KIS SL GK
Sbjct: 157 LPNMELPSWLSFGHYRIQGILSSGGKRLGCVKISASLMGK 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,867,880
Number of extensions: 1516078
Number of successful extensions: 5018
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5009
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000396.2| ganglioside GM2 activator isoform 1 precursor [... 243 3e-64
Alignment gi|NP_001161079.1| ganglioside GM2 activator isoform 2 precurso... 165 7e-41
>ref|NP_000396.2| ganglioside GM2 activator isoform 1 precursor [Homo sapiens].
Length = 193
Score = 243 bits (619), Expect = 3e-64
Identities = 105/161 (65%), Positives = 133/161 (82%)
Frame = +1
Query: 268 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVA 447
S FSW+NCD GKDPAVI SLTL+PDPI +PGN+ +S TSV L+ PLKV+L +EKEVA
Sbjct: 32 SSFSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVA 91
Query: 448 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE 627
G W+ IPC + +GSCT+++ CD+L++LIP + CPEPL TYGLPCHCPFK GTYSLP+SE
Sbjct: 92 GLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSE 151
Query: 628 FILPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKG 750
F++P LELP WL++GNYRI+ ++SS+GK LGC KI+ SLKG
Sbjct: 152 FVVPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKG 192
>ref|NP_001161079.1| ganglioside GM2 activator isoform 2 precursor [Homo sapiens].
Length = 186
Score = 165 bits (418), Expect = 7e-41
Identities = 70/111 (63%), Positives = 89/111 (80%)
Frame = +1
Query: 268 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVA 447
S FSW+NCD GKDPAVI SLTL+PDPI +PGN+ +S TSV L+ PLKV+L +EKEVA
Sbjct: 32 SSFSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVA 91
Query: 448 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKA 600
G W+ IPC + +GSCT+++ CD+L++LIP + CPEPL TYGLPCHCPF +
Sbjct: 92 GLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFSS 142
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,834,293
Number of extensions: 1489431
Number of successful extensions: 5338
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5248
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034429.1| ganglioside GM2 activator precursor [Mus muscul... 251 6e-67
>ref|NP_034429.1| ganglioside GM2 activator precursor [Mus musculus].
Length = 193
Score = 251 bits (642), Expect = 6e-67
Identities = 113/160 (70%), Positives = 134/160 (83%)
Frame = +1
Query: 274 FSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVAGF 453
FSW+NCD GKDPAVI SLT++PDPI +PG++ VS E +TSV L P KVELTVEKEVAGF
Sbjct: 34 FSWDNCDEGKDPAVIKSLTIQPDPIVVPGDVVVSLEGKTSVPLTAPQKVELTVEKEVAGF 93
Query: 454 WVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESEFI 633
WV IPCVE++GSC+Y+NICD+++ IP ++CPEPLHTYGLPCHCPFK GTYSLP S F
Sbjct: 94 WVKIPCVEQLGSCSYENICDLIDEYIPPGESCPEPLHTYGLPCHCPFKEGTYSLPTSNFT 153
Query: 634 LPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
+P LELP WLS+GNYRIQ I+SS GK LGC KI+ SLKG+
Sbjct: 154 VPDLELPSWLSTGNYRIQSILSSGGKRLGCIKIAASLKGR 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,768,098
Number of extensions: 1245622
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4177
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359891.1| PREDICTED: ganglioside GM2 activator-like is... 339 2e-93
Alignment gi|XP_003134190.1| PREDICTED: ganglioside GM2 activator-like is... 339 2e-93
>ref|XP_003359891.1| PREDICTED: ganglioside GM2 activator-like isoform 2 [Sus scrofa].
Length = 193
Score = 339 bits (869), Expect = 2e-93
Identities = 160/162 (98%), Positives = 161/162 (99%)
Frame = +1
Query: 268 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVA 447
SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLL+DPLKVELTVEKEVA
Sbjct: 32 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLDDPLKVELTVEKEVA 91
Query: 448 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE 627
GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE
Sbjct: 92 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE 151
Query: 628 FILPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
FILPQLELPGWLSSGNYRIQGIMS NGKHLGCAKISLSLKGK
Sbjct: 152 FILPQLELPGWLSSGNYRIQGIMSRNGKHLGCAKISLSLKGK 193
>ref|XP_003134190.1| PREDICTED: ganglioside GM2 activator-like isoform 1 [Sus scrofa].
Length = 193
Score = 339 bits (869), Expect = 2e-93
Identities = 160/162 (98%), Positives = 161/162 (99%)
Frame = +1
Query: 268 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLNDPLKVELTVEKEVA 447
SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLL+DPLKVELTVEKEVA
Sbjct: 32 SHFSWENCDGGKDPAVINSLTLKPDPIAIPGNLNVSAEVRTSVLLDDPLKVELTVEKEVA 91
Query: 448 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE 627
GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE
Sbjct: 92 GFWVTIPCVEKMGSCTYDNICDILEVLIPLEDTCPEPLHTYGLPCHCPFKAGTYSLPESE 151
Query: 628 FILPQLELPGWLSSGNYRIQGIMSSNGKHLGCAKISLSLKGK 753
FILPQLELPGWLSSGNYRIQGIMS NGKHLGCAKISLSLKGK
Sbjct: 152 FILPQLELPGWLSSGNYRIQGIMSRNGKHLGCAKISLSLKGK 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,685,159
Number of extensions: 951690
Number of successful extensions: 3303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3299
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007171
(1208 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 985 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 985 bits (497), Expect = 0.0
Identities = 580/610 (95%), Gaps = 3/610 (0%)
Strand = Plus / Minus
Query: 601 ggcacctactcactgcctgagtccgaattcatcctgcctcaactggagctacccggctgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976240 ggcacctactcactgcctgagtccgaattcatcctgcctcaactggagctacccggctgg 77976181
Query: 661 ctcagctccgggaactaccgcatccagggcatcatgagcagcaatgggaagcacctgggc 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77976180 ctcagctccgggaactaccgcatccagggcatcatgagcaggaatgggaagcacctgggc 77976121
Query: 721 tgtgccaagatctccctctccctaaagggcaaataaggtggcacccgccactccagaatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976120 tgtgccaagatctccctctccctaaagggcaaataaggtggcacccgccactccagaatg 77976061
Query: 781 aagggggtgcaaagacggcatcatcttcttctgtcttacgttgaccaaggccaagttcct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976060 aagggggtgcaaagacggcatcatcttcttctgtcttacgttgaccaaggccaagttcct 77976001
Query: 841 ttttcaagcacctttctagaaacaatgacactctctcactgaaagttgttttatgccctc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976000 ttttcaagcacctttctagaaacaatgacactctctcactgaaagttgttttatgccctc 77975941
Query: 901 tatgcaatttttaggcatgatccagcagccttaacccaagggaggttgagcctggtggtc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77975940 tatgcaatttttaggcatgatccagcagccttaacccaagggaggttgagcctggtggtc 77975881
Query: 961 tgtgacagcccaggacctctgctgggctggccactgcattttcctcctca-cccatggca 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 77975880 tgtgacagcccaggacctctgctgggctggccactgcattttcctcctcaccccatggca 77975821
Query: 1020 tcctctttaagaacttaacttttcttctaaaccatcaaggaggggggctaacacgctttg 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77975820 tcctctttaagaacttaacttttcttctaaaccatcaaggaggggggctaacacgctttg 77975761
Query: 1080 tgannnnnnnnnnagagttcagactgaaccaatcctggtctcctg-agtacatttatggt 1138
||| |||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct: 77975760 tgacccccccctccaagttcagactgacccaatcttggtctcctgaagtacatttatggt 77975701
Query: 1139 tttctcaatgannnnnnnnngggtgcactgacctaaaagcattgtgagggtactaacagt 1198
||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 77975700 tttctcattgattttttttt-ggtgcactgacctaaaagcagtgtgagggtactaacagt 77975642
Query: 1199 ttttaatttt 1208
||||| ||||
Sbjct: 77975641 ttttattttt 77975632
Score = 521 bits (263), Expect = e-145
Identities = 263/263 (100%)
Strand = Plus / Minus
Query: 2 aattcccggccaggaaatctcatatccagagagggcggggcgaacagggaagtggctgca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77987605 aattcccggccaggaaatctcatatccagagagggcggggcgaacagggaagtggctgca 77987546
Query: 62 ttcagccttgcatagcaatgcacagctttgcataagcaatagaggtaggcttttaaaggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77987545 ttcagccttgcatagcaatgcacagctttgcataagcaatagaggtaggcttttaaaggc 77987486
Query: 122 gtcgtcaccagcacgaatcttgtagttatcccggcgcgaacccatctttcgtgatgagcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77987485 gtcgtcaccagcacgaatcttgtagttatcccggcgcgaacccatctttcgtgatgagcc 77987426
Query: 182 ctctgatgcaggctccgcttctgatcgccctgggcttgcttctcacctgcccagcggctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77987425 ctctgatgcaggctccgcttctgatcgccctgggcttgcttctcacctgcccagcggctc 77987366
Query: 242 ctgcactcctcctcccgaaccag 264
|||||||||||||||||||||||
Sbjct: 77987365 ctgcactcctcctcccgaaccag 77987343
Score = 361 bits (182), Expect = 6e-97
Identities = 185/186 (99%)
Strand = Plus / Minus
Query: 416 aggtagaattaactgtggagaaggaagttgctggcttctgggtcacaatcccatgtgtgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976770 aggtagaattaactgtggagaaggaagttgctggcttctgggtcacaatcccatgtgtgg 77976711
Query: 476 aaaagatggggagctgcacctacgacaacatctgtgatatccttgaagtcttaattcccc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976710 aaaagatggggagctgcacctacgacaacatctgtgatatccttgaagtcttaattcccc 77976651
Query: 536 ttgaggatacctgcccagaacctctgcacacctatggccttccctgccactgtcccttca 595
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77976650 tcgaggatacctgcccagaacctctgcacacctatggccttccctgccactgtcccttca 77976591
Query: 596 aagccg 601
||||||
Sbjct: 77976590 aagccg 77976585
Score = 307 bits (155), Expect = 8e-81
Identities = 158/159 (99%)
Strand = Plus / Minus
Query: 261 ccagctcagtcacttctcctgggaaaactgtgatggcgggaaggaccctgcggtgatcaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77981989 ccagctcagtcacttctcctgggaaaactgtgatggcgggaaggaccctgcggtgatcaa 77981930
Query: 321 cagcctgactctgaaacccgaccctattgccattcctgggaacttgaatgtcagtgctga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77981929 cagcctgactctgaaacccgaccctattgccattcctgggaacttgaatgtcagtgctga 77981870
Query: 381 ggtcaggaccagtgttctccttaatgatcctctgaaggt 419
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 77981869 ggtcaggaccagtgttctccttgatgatcctctgaaggt 77981831
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,521,635
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 6
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)