Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029656.1| eukaryotic translation initiation factor 3 s... 882 0.0
>ref|NP_001029656.1| eukaryotic translation initiation factor 3 subunit D [Bos taurus].
Length = 548
Score = 882 bits (2279), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 159
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 160 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 219
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 220 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 279
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN
Sbjct: 280 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 339
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 340 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 399
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 400 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 459
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 460 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 519
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSSD
Sbjct: 520 YSLPDGTFSSD 530
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,415,052
Number of extensions: 1179232
Number of successful extensions: 4547
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4531
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 392
Effective length of database: 14,174,046
Effective search space: 5556226032
Effective search space used: 5556226032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850595.1| PREDICTED: similar to eukaryotic translation in... 882 0.0
Alignment gi|XP_861890.1| PREDICTED: similar to eukaryotic translation in... 876 0.0
Alignment gi|XP_861865.1| PREDICTED: similar to eukaryotic translation in... 844 0.0
>ref|XP_850595.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 1 [Canis familiaris].
Length = 548
Score = 882 bits (2278), Expect = 0.0
Identities = 430/431 (99%), Positives = 431/431 (100%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 159
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 160 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 219
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 220 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 279
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN
Sbjct: 280 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 339
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNE+ASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 340 PNPFVEDDMDKNEVASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 399
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 400 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 459
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 460 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 519
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSSD
Sbjct: 520 YSLPDGTFSSD 530
>ref|XP_861890.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 3 [Canis familiaris].
Length = 551
Score = 876 bits (2264), Expect = 0.0
Identities = 430/434 (99%), Positives = 431/434 (99%), Gaps = 3/434 (0%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQ---K 171
FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQ K
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQVHLK 159
Query: 172 PRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKP 351
PRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKP
Sbjct: 160 PRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKP 219
Query: 352 LRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKL 531
LRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKL
Sbjct: 220 LRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKL 279
Query: 532 FFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYN 711
FFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYN
Sbjct: 280 FFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYN 339
Query: 712 FPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTL 891
FPNPNPFVEDDMDKNE+ASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTL
Sbjct: 340 FPNPNPFVEDDMDKNEVASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTL 399
Query: 892 NEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYH 1071
NEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYH
Sbjct: 400 NEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYH 459
Query: 1072 VKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQV 1251
VKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQV
Sbjct: 460 VKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQV 519
Query: 1252 IRVYSLPDGTFSSD 1293
IRVYSLPDGTFSSD
Sbjct: 520 IRVYSLPDGTFSSD 533
>ref|XP_861865.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 2 [Canis familiaris].
Length = 538
Score = 844 bits (2180), Expect = 0.0
Identities = 414/431 (96%), Positives = 418/431 (96%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKE + + G+ QKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKESQAL----------GLTQKWDQKSQKPRD 149
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 150 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 209
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 210 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 269
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN
Sbjct: 270 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 329
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNE+ASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 330 PNPFVEDDMDKNEVASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 389
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 390 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 449
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 450 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 509
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSSD
Sbjct: 510 YSLPDGTFSSD 520
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,397,509
Number of extensions: 1183280
Number of successful extensions: 5063
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5031
Number of HSP's successfully gapped: 3
Length of query: 498
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 391
Effective length of database: 15,307,552
Effective search space: 5985252832
Effective search space used: 5985252832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003744.1| eukaryotic translation initiation factor 3 subu... 880 0.0
>ref|NP_003744.1| eukaryotic translation initiation factor 3 subunit D [Homo sapiens].
Length = 548
Score = 880 bits (2273), Expect = 0.0
Identities = 430/431 (99%), Positives = 430/431 (99%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNMLQFNLQ LPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 159
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 160 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 219
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 220 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 279
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN
Sbjct: 280 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 339
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 340 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 399
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 400 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 459
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 460 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 519
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSSD
Sbjct: 520 YSLPDGTFSSD 530
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,311,229
Number of extensions: 1151531
Number of successful extensions: 4746
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4726
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 391
Effective length of database: 14,770,016
Effective search space: 5775076256
Effective search space used: 5775076256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061219.2| eukaryotic translation initiation factor 3 subu... 878 0.0
>ref|NP_061219.2| eukaryotic translation initiation factor 3 subunit D [Mus musculus].
Length = 548
Score = 878 bits (2269), Expect = 0.0
Identities = 428/431 (99%), Positives = 431/431 (100%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNM+QFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMVQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 159
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 160 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 219
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 220 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 279
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMG+ERYNFPN
Sbjct: 280 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGRERYNFPN 339
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 340 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 399
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 400 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 459
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 460 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 519
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSS+
Sbjct: 520 YSLPDGTFSSE 530
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,884,938
Number of extensions: 966195
Number of successful extensions: 3940
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3921
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 392
Effective length of database: 12,433,743
Effective search space: 4874027256
Effective search space used: 4874027256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126092.1| PREDICTED: eukaryotic translation initiation... 882 0.0
>ref|XP_003126092.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like
[Sus scrofa].
Length = 548
Score = 882 bits (2279), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Frame = +1
Query: 1 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 180
FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD
Sbjct: 100 FAQRNLRRDKDRRNMLQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRD 159
Query: 181 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 360
SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS
Sbjct: 160 SSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRS 219
Query: 361 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 540
IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD
Sbjct: 220 IKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFD 279
Query: 541 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 720
KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN
Sbjct: 280 KRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPN 339
Query: 721 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 900
PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW
Sbjct: 340 PNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEW 399
Query: 901 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 1080
DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD
Sbjct: 400 DSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKD 459
Query: 1081 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 1260
SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV
Sbjct: 460 SSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRV 519
Query: 1261 YSLPDGTFSSD 1293
YSLPDGTFSSD
Sbjct: 520 YSLPDGTFSSD 530
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,953,999
Number of extensions: 821119
Number of successful extensions: 2889
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2870
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,779,541
Effective search space: 3467918695
Effective search space used: 3467918695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007174
(1496 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 472 e-130
>Sscrofa_Chr05
|| Length = 111506441
Score = 472 bits (238), Expect = e-130
Identities = 241/242 (99%)
Strand = Plus / Plus
Query: 1052 ggtacgtgtcccggtaccacgtgaaagactcctcccgccacgtcatcctgggcacccagc 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910736 ggtacgtgtcccggtaccacgtgaaagactcctcccgccacgtcatcctgggcacccagc 8910795
Query: 1112 agttcaagccgaacgaattcgccagccagatcaacctgagcgtggagaacgcctggggca 1171
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910796 agttcaagccaaacgaattcgccagccagatcaacctgagcgtggagaacgcctggggca 8910855
Query: 1172 tcctgcgctgcgtcatcgacatctgcatgaagctggaggagggcaagtacctcatcctca 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910856 tcctgcgctgcgtcatcgacatctgcatgaagctggaggagggcaagtacctcatcctca 8910915
Query: 1232 aagaccccaacaagcaggtcatccgcgtctacagcctgcccgacggcaccttcagctccg 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910916 aagaccccaacaagcaggtcatccgcgtctacagcctgcccgacggcaccttcagctccg 8910975
Query: 1292 at 1293
||
Sbjct: 8910976 at 8910977
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 413 agctggcaaaaactcaggggaacgtgtttgccaccgacgccatcctggccacactgatga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905513 agctggcaaaaactcaggggaacgtgtttgccaccgacgccatcctggccacactgatga 8905572
Query: 473 gctgcacccgctccgtgtactcctgggacattgtcgtccagagggtcgggtccaagctct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905573 gctgcacccgctccgtgtactcctgggacattgtcgtccagagggtcgggtccaagctct 8905632
Query: 533 tctttgacaagagggacaactctgactttg 562
||||||||||||||||||||||||||||||
Sbjct: 8905633 tctttgacaagagggacaactctgactttg 8905662
Score = 281 bits (142), Expect = 5e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 909 gcactgtaacggcgtcgactggcgtcagaagctggattcccagcgaggggccgtcatcgc 968
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8910404 gcactgtaacggcgtcgactggcgtcagaagctggattcccagcgaggagccgtcatcgc 8910463
Query: 969 caccgagttgaagaacaacagctacaagttggcccgatggacctgctgtgcgctgctggc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910464 caccgagttgaagaacaacagctacaagttggcccgatggacctgctgtgcgctgctggc 8910523
Query: 1029 cgggtccgagtacctcaagcttgggt 1054
||||||||||||||||||||||||||
Sbjct: 8910524 cgggtccgagtacctcaagcttgggt 8910549
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 282 cgagtgctgcggggccctggagtactacgacaaagccttcgaccgcatcaccaccaggag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904942 cgagtgctgcggggccctggagtactacgacaaagccttcgaccgcatcaccaccaggag 8905001
Query: 342 tgagaagccgctgcggagcatcaagcgcatcttccacaccgtcaccaccacggacgaccc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905002 tgagaagccgctgcggagcatcaagcgcatcttccacaccgtcaccaccacggacgaccc 8905061
Query: 402 cgtcatccggaag 414
|||||||||||||
Sbjct: 8905062 cgtcatccggaag 8905074
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 562 gacctcctgaccgtgagtgagacagccaacgagccccctcaagacgaaggtaactccttc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906336 gacctcctgaccgtgagtgagacagccaacgagccccctcaagacgaaggtaactccttc 8906395
Query: 622 aactcgccccgcaacctggccatggaagccacctacatcaaccacaacttctcccagcag 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906396 aactcgccccgcaacctggccatggaagccacctacatcaaccacaacttctcccagcag 8906455
Query: 682 tgcttgaggatgg 694
|||||||||||||
Sbjct: 8906456 tgcttgaggatgg 8906468
Score = 264 bits (133), Expect = 1e-67
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 1344 aacttaaaccagatggcgacgtggagccggagtctgtactcccgcggagcctgcgagggc 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8911480 aacttaaaccagatggcgacgtggagccggagtctgtactcccgcggagcctgcgagggc 8911539
Query: 1404 tttgggtgcctgctggagtgtttgtctgatccttgctctctgaagcctgacagttggaat 1463
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8911540 tttgggtgcctgctggagtgtttgtctgatccttgctctctgaaacctgacagttggaat 8911599
Query: 1464 aaagtaaaagtctgtgt 1480
|||||||||||||||||
Sbjct: 8911600 aaagtaaaagtctgtgt 8911616
Score = 252 bits (127), Expect = 5e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 779 gttaccgcaggtggaagctgggagacgacatcgacctcatcgtccgctgtgagcacgacg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8907306 gttaccgcaggtggaagctgggagacgacatcgacctcatcgtccgctgtgagcatgacg 8907365
Query: 839 gcgtcatgaccggagccaacggggaggtgtccttcatcaacatcaagacgctcaacgagt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8907366 gcgtcatgaccggagccaacggggaggtgtccttcatcaacatcaagacgctcaacgagt 8907425
Query: 899 gggactcgcgg 909
|||||||||||
Sbjct: 8907426 gggactcgcgg 8907436
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 165 gcagaagccccgagactcttcggtggaggtgcgcagtgactgggaggtgaaggaggagat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904032 gcagaagccccgagactcttcggtggaggtgcgcagtgactgggaggtgaaggaggagat 8904091
Query: 225 ggacttcccgcagttgatgaagatgcgctacttagaagtgtccgagccccaggacat 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904092 ggacttcccgcagttgatgaagatgcgctacttagaagtgtccgagccccaggacat 8904148
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 7 cagcggaacctccgcagagacaaagatcgacggaacatgttgcagttcaacctgcagacc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8902125 cagcggaacctccgcagagacaaagatcgacggaacatgttgcagttcaacctgcagacc 8902184
Query: 67 ctgcctaagagcgccaagcagaaggagag 95
|||||||||||||||||||||||||||||
Sbjct: 8902185 ctgcctaagagcgccaagcagaaggagag 8902213
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 693 ggggaaggaaaggtacaacttccccaacccaaacccatttgtggaggacgacatggacaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8907130 ggggaaggaaaggtacaacttccccaacccaaacccatttgtggaggacgacatggacaa 8907189
Query: 753 gaacgagatcgcctccgtggcctaccg 779
|||||||||||||||||||||||||||
Sbjct: 8907190 gaacgagatcgcctccgtggcctaccg 8907216
Score = 101 bits (51), Expect = 1e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 94 agagaacgcattcgactgcnnnnnnnnttccagaaacagtttggagtgaggcagaaatgg 153
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8903020 agagaacgcattcgactgcaaaaaaaattccagaaacagtttggagtgaggcagaaatgg 8903079
Query: 154 gaccaaaaatcgcag 168
|||||||||||||||
Sbjct: 8903080 gaccaaaaatcgcag 8903094
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,918,164
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 11
Length of query: 1496
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1475
Effective length of database: 2,808,413,156
Effective search space: 4142409405100
Effective search space used: 4142409405100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)