Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029656.1| eukaryotic translation initiation factor 3 s... 830 0.0
>ref|NP_001029656.1| eukaryotic translation initiation factor 3 subunit D [Bos taurus].
Length = 548
Score = 830 bits (2143), Expect = 0.0
Identities = 403/415 (97%), Positives = 405/415 (97%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 180
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 181 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 240
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 241 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 300
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NEIASVA
Sbjct: 301 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRY 360
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 415
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,401,168
Number of extensions: 1663213
Number of successful extensions: 5847
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5810
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 475
Effective length of database: 14,107,870
Effective search space: 6701238250
Effective search space used: 6701238250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850595.1| PREDICTED: similar to eukaryotic translation in... 829 0.0
Alignment gi|XP_861890.1| PREDICTED: similar to eukaryotic translation in... 824 0.0
Alignment gi|XP_861865.1| PREDICTED: similar to eukaryotic translation in... 791 0.0
>ref|XP_850595.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 1 [Canis familiaris].
Length = 548
Score = 829 bits (2142), Expect = 0.0
Identities = 402/415 (96%), Positives = 405/415 (97%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 180
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 181 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 240
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 241 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 300
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NE+ASVA
Sbjct: 301 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEVASVAYRY 360
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 415
>ref|XP_861890.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 3 [Canis familiaris].
Length = 551
Score = 824 bits (2128), Expect = 0.0
Identities = 402/418 (96%), Positives = 405/418 (96%), Gaps = 3/418 (0%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQ---KPRDSSVEVRSDWEVKEEMDFP 1036
TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQ KPRDSSVEVRSDWEVKEEMDFP
Sbjct: 121 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQVHLKPRDSSVEVRSDWEVKEEMDFP 180
Query: 1037 QLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRK 1216
QLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRK
Sbjct: 181 QLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRK 240
Query: 1217 LAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANE 1396
LAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANE
Sbjct: 241 LAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANE 300
Query: 1397 PPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVA 1576
PPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NE+ASVA
Sbjct: 301 PPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEVASVA 360
Query: 1577 PTLRXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 YRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 418
>ref|XP_861865.1| PREDICTED: similar to eukaryotic translation initiation factor 3
subunit 7 isoform 2 [Canis familiaris].
Length = 538
Score = 791 bits (2044), Expect = 0.0
Identities = 386/415 (93%), Positives = 392/415 (94%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
TLPKSAKQKE + + G+ QKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 TLPKSAKQKESQAL----------GLTQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 170
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 171 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 230
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 231 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 290
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NE+ASVA
Sbjct: 291 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEVASVAYRY 350
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 351 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 405
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,354,289
Number of extensions: 1726990
Number of successful extensions: 6494
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6431
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 475
Effective length of database: 15,274,216
Effective search space: 7255252600
Effective search space used: 7255252600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003744.1| eukaryotic translation initiation factor 3 subu... 826 0.0
>ref|NP_003744.1| eukaryotic translation initiation factor 3 subunit D [Homo sapiens].
Length = 548
Score = 826 bits (2133), Expect = 0.0
Identities = 401/415 (96%), Positives = 404/415 (97%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDE+SFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
LPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 ILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 180
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 181 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 240
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 241 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 300
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NEIASVA
Sbjct: 301 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRY 360
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 415
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,899,016
Number of extensions: 1680923
Number of successful extensions: 6050
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6017
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 475
Effective length of database: 14,737,052
Effective search space: 7000099700
Effective search space used: 7000099700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061219.2| eukaryotic translation initiation factor 3 subu... 827 0.0
>ref|NP_061219.2| eukaryotic translation initiation factor 3 subunit D [Mus musculus].
Length = 548
Score = 827 bits (2137), Expect = 0.0
Identities = 401/415 (96%), Positives = 405/415 (97%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNM+QFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMVQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 180
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 181 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 240
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 241 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 300
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMG+ERYNFP PNPFVEDDM +NEIASVA
Sbjct: 301 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGRERYNFPNPNPFVEDDMDKNEIASVAYRY 360
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 415
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,879,107
Number of extensions: 1408703
Number of successful extensions: 5074
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5032
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 476
Effective length of database: 12,403,707
Effective search space: 5904164532
Effective search space used: 5904164532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126092.1| PREDICTED: eukaryotic translation initiation... 830 0.0
>ref|XP_003126092.1| PREDICTED: eukaryotic translation initiation factor 3 subunit D-like
[Sus scrofa].
Length = 548
Score = 830 bits (2143), Expect = 0.0
Identities = 403/415 (97%), Positives = 405/415 (97%)
Frame = +2
Query: 506 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 685
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS
Sbjct: 1 MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYS 60
Query: 686 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 865
SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ
Sbjct: 61 SQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQ 120
Query: 866 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 1045
TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM
Sbjct: 121 TLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLM 180
Query: 1046 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 1225
KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK
Sbjct: 181 KMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAK 240
Query: 1226 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 1405
TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ
Sbjct: 241 TQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQ 300
Query: 1406 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPXPNPFVEDDMXQNEIASVAPTL 1585
DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFP PNPFVEDDM +NEIASVA
Sbjct: 301 DEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRY 360
Query: 1586 RXWKLGDDIDLIVRCEHDGVMTGATGEVSFHQHQTLNEWDSRHCNGVDWRQKLDS 1750
R WKLGDDIDLIVRCEHDGVMTGA GEVSF +TLNEWDSRHCNGVDWRQKLDS
Sbjct: 361 RRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDS 415
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,887,614
Number of extensions: 1072403
Number of successful extensions: 3776
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3736
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 479
Effective length of database: 8,754,644
Effective search space: 4193474476
Effective search space used: 4193474476
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007175
(1750 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 839 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 839 bits (423), Expect = 0.0
Identities = 436/439 (99%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 60 gcgggacacagaggggccgaagcgtcccgcgaggcattgtgggacataaaggcgctgtca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895475 gcgggacacagaggggccgaagcgtcccgcgaggcattgtgggacataaaggcgctgtca 8895534
Query: 120 gccactcgtcacctccagcttcaactgagagccgccacgttttaaaaaacttgaacgcct 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895535 gccactcgccacctccagcttcaactgagagccgccacgttttaaaaaacttgaacgcct 8895594
Query: 180 tctcggagcgtccccggataccccatgacgtaactgcaaacatcctctggagtcttgcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895595 tctcggagcgtccccggataccccatgacgtaactgcaaacatcctctggagtcttgcag 8895654
Query: 240 cctcggaggctaataagaacacctcgaaaagaacaccgatatacttccgggtgtgccttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895655 cctcggaggctaataagaacacctcgaaaagaacaccgatatacttccgggtgtgccttc 8895714
Query: 300 actttacgactcgtgcgttccgccgccgaaccggaaggaagctggcgagctatttacgac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895715 actttacgactcgtgcgttccgccgccgaaccggaaggaagctggcgagctatttacgac 8895774
Query: 360 atagcgggtcgtgtttacggcaccggccgctgcgcgcgcatctctcctcc-tttcccgat 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8895775 atagcgggtcgtgtttacggcaccggccgctgcgcgcgcatctctcctccttttcccgat 8895834
Query: 419 tccttgaaacgcaggctgtggcgcggtctccggcctgcactatctctcgccatcggggcc 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895835 tccttgaagcgcaggctgtggcgcggtctccggcctgcactatctctcgccatcggggcc 8895894
Query: 479 ggctaaagccgttgcgggt 497
|||||||||||||||||||
Sbjct: 8895895 ggctaaagccgttgcgggt 8895913
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1215 agctggcaaaaactcaggggaacgtgtttgccaccgacgccatcctggccacactgatga 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905513 agctggcaaaaactcaggggaacgtgtttgccaccgacgccatcctggccacactgatga 8905572
Query: 1275 gctgcacccgctccgtgtactcctgggacattgtcgtccagagggtcgggtccaagctct 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905573 gctgcacccgctccgtgtactcctgggacattgtcgtccagagggtcgggtccaagctct 8905632
Query: 1335 tctttgacaagagggacaactctgactttg 1364
||||||||||||||||||||||||||||||
Sbjct: 8905633 tctttgacaagagggacaactctgactttg 8905662
Score = 272 bits (137), Expect = 6e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 675 ataagtactcctctcagtttggaggtgggagtcagtatgcctacttccacgaggaggacg 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8900681 ataagtactcctctcagtttggaggtgggagtcagtatgcctacttccacgaggaggacg 8900740
Query: 735 aaactagcttccagctggtggacacggcgcgcacacagaagaccgcctaccagcggaatc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8900741 aaactagcttccagctggtggacacggcgcgcacacagaagaccgcctaccagcggaatc 8900800
Query: 795 ggatgcgatttgcacag 811
|||||||||||||||||
Sbjct: 8900801 ggatgcgatttgcacag 8900817
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 495 ggttttagaagatggcgaagttcatgacacctgtgatccaagacaacccttcaggctggg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8899086 ggttttagaagatggcgaagttcatgacacctgtgatccaagacaacccttcaggctggg 8899145
Query: 555 gtccctgtgcggttcctgagcagtttcgggatatgccctaccagccattcagcaaaggag 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8899146 gtccctgtgcggttcctgagcagtttcgggatatgccctaccagccattcagcaaaggag 8899205
Query: 615 atcggctcggaaaggt 630
||||||||||||||||
Sbjct: 8899206 atcggctcggaaaggt 8899221
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1084 cgagtgctgcggggccctggagtactacgacaaagccttcgaccgcatcaccaccaggag 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904942 cgagtgctgcggggccctggagtactacgacaaagccttcgaccgcatcaccaccaggag 8905001
Query: 1144 tgagaagccgctgcggagcatcaagcgcatcttccacaccgtcaccaccacggacgaccc 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905002 tgagaagccgctgcggagcatcaagcgcatcttccacaccgtcaccaccacggacgaccc 8905061
Query: 1204 cgtcatccggaag 1216
|||||||||||||
Sbjct: 8905062 cgtcatccggaag 8905074
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1364 gacctcctgaccgtgagtgagacagccaacgagccccctcaagacgaaggtaactccttc 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906336 gacctcctgaccgtgagtgagacagccaacgagccccctcaagacgaaggtaactccttc 8906395
Query: 1424 aactcgccccgcaacctggccatggaagccacctacatcaaccacaacttctcccagcag 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906396 aactcgccccgcaacctggccatggaagccacctacatcaaccacaacttctcccagcag 8906455
Query: 1484 tgcttgaggatgg 1496
|||||||||||||
Sbjct: 8906456 tgcttgaggatgg 8906468
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 967 gcagaagccccgagactcttcggtggaggtgcgcagtgactgggaggtgaaggaggagat 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904032 gcagaagccccgagactcttcggtggaggtgcgcagtgactgggaggtgaaggaggagat 8904091
Query: 1027 ggacttcccgcagttgatgaagatgcgctacttagaagtgtccgagccccaggacat 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8904092 ggacttcccgcagttgatgaagatgcgctacttagaagtgtccgagccccaggacat 8904148
Score = 204 bits (103), Expect = 1e-49
Identities = 122/126 (96%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 1586 cgcangtggaagctgggagacgacatcgacctcatcgtccgctgtgagcatgacggcgtc 1645
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8907311 cgcaggtggaagctgggagacgacatcgacctcatcgtccgctgtgagcatgacggcgtc 8907370
Query: 1646 atgaccggagccaccggggaggtgtcctttcatcaacatc-agacgctcaacgagtggga 1704
||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 8907371 atgaccggagccaacggggaggtgtcc-ttcatcaacatcaagacgctcaacgagtggga 8907429
Query: 1705 ctcgcg 1710
||||||
Sbjct: 8907430 ctcgcg 8907435
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 809 cagcggaacctccgcagagacaaagatcgacggaacatgttgcagttcaacctgcagacc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8902125 cagcggaacctccgcagagacaaagatcgacggaacatgttgcagttcaacctgcagacc 8902184
Query: 869 ctgcctaagagcgccaagcagaaggagag 897
|||||||||||||||||||||||||||||
Sbjct: 8902185 ctgcctaagagcgccaagcagaaggagag 8902213
Score = 119 bits (60), Expect = 5e-24
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1495 ggggaaggaaaggtacaacttcccccancccaacccatttgtggaggacgacatggnaca 1554
||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
Sbjct: 8907130 ggggaaggaaaggtacaacttccccaacccaaacccatttgtggaggacgacatggacaa 8907189
Query: 1555 gaacgagatcgcctccgtggcc 1576
||||||||||||||||||||||
Sbjct: 8907190 gaacgagatcgcctccgtggcc 8907211
Score = 101 bits (51), Expect = 1e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 896 agagaacgcattcgactgcnnnnnnnnttccagaaacagtttggagtgaggcagaaatgg 955
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8903020 agagaacgcattcgactgcaaaaaaaattccagaaacagtttggagtgaggcagaaatgg 8903079
Query: 956 gaccaaaaatcgcag 970
|||||||||||||||
Sbjct: 8903080 gaccaaaaatcgcag 8903094
Score = 99.6 bits (50), Expect = 5e-18
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 627 aggttgccgactggacgggggccacgtaccaagacaagaggtacacaaataagt 680
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8899478 aggttgccgactggacgggggccacgtaccaagacaagaggtacacaagtaagt 8899531
Score = 69.9 bits (35), Expect = 4e-09
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1712 cactgtaacggcgtcgactggcgtcaaaagctggattcc 1750
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 8910405 cactgtaacggcgtcgactggcgtcagaagctggattcc 8910443
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,226,174
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 14
Length of query: 1750
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1728
Effective length of database: 2,808,408,574
Effective search space: 4852930015872
Effective search space used: 4852930015872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)