Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076967.1| rho-related GTP-binding protein RhoJ [Bos ta... 394 e-110
Alignment gi|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos ta... 301 7e-82
Alignment gi|XP_002691351.1| PREDICTED: ras homolog gene family, member Q... 301 7e-82
Alignment gi|NP_001039797.1| cell division control protein 42 homolog pre... 244 7e-65
Alignment gi|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [... 233 2e-61
Alignment gi|NP_776588.1| ras-related C3 botulinum toxin substrate 1 prec... 233 3e-61
Alignment gi|NP_786986.1| ras-related C3 botulinum toxin substrate 2 prec... 228 7e-60
Alignment gi|XP_002700065.1| PREDICTED: ras homolog gene family, member G... 198 6e-51
Alignment gi|XP_609522.3| PREDICTED: ras homolog gene family, member G-li... 198 6e-51
Alignment gi|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos ta... 196 2e-50
>ref|NP_001076967.1| rho-related GTP-binding protein RhoJ [Bos taurus].
Length = 214
Score = 394 bits (1013), Expect = e-110
Identities = 190/195 (97%), Positives = 191/195 (97%), Gaps = 1/195 (0%)
Frame = +3
Query: 516 MNCQEGKDRSCGCG-HEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 692
MNCQEG D SCGCG HEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
Sbjct: 1 MNCQEGNDSSCGCGGHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 60
Query: 693 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELR 872
TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL+
Sbjct: 61 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK 120
Query: 873 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 1052
CMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
Sbjct: 121 GCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 180
Query: 1053 KGLKAVFDEAILTIF 1097
KGLKAVFDEAILTIF
Sbjct: 181 KGLKAVFDEAILTIF 195
>ref|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos taurus].
Length = 205
Score = 301 bits (771), Expect = 7e-82
Identities = 146/174 (83%), Positives = 160/174 (91%)
Frame = +3
Query: 573 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQE 752
MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV+VTVGGKQ+LLGLYDTAGQE
Sbjct: 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68
Query: 753 DYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDD 932
DY++LRPLSYP TDVFLICFSVVNPAS+ NV+EEWVPEL++ P+VP++LIGTQIDLRDD
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 933 PKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
PKTLARL MKEKP+ E G KLAK IGA CY+ECSALTQKGLK VFDEAI+ I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>ref|XP_002691351.1| PREDICTED: ras homolog gene family, member Q-like [Bos taurus].
Length = 205
Score = 301 bits (771), Expect = 7e-82
Identities = 146/174 (83%), Positives = 160/174 (91%)
Frame = +3
Query: 573 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQE 752
MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV+VTVGGKQ+LLGLYDTAGQE
Sbjct: 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68
Query: 753 DYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDD 932
DY++LRPLSYP TDVFLICFSVVNPAS+ NV+EEWVPEL++ P+VP++LIGTQIDLRDD
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 933 PKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
PKTLARL MKEKP+ E G KLAK IGA CY+ECSALTQKGLK VFDEAI+ I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>ref|NP_001039797.1| cell division control protein 42 homolog precursor [Bos taurus].
Length = 191
Score = 244 bits (624), Expect = 7e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [Bos taurus].
Length = 192
Score = 233 bits (594), Expect = 2e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R PH P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ RL K P+TY G+ +A+ IG+ YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_776588.1| ras-related C3 botulinum toxin substrate 1 precursor [Bos taurus].
Length = 192
Score = 233 bits (593), Expect = 3e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_786986.1| ras-related C3 botulinum toxin substrate 2 precursor [Bos taurus].
Length = 192
Score = 228 bits (581), Expect = 7e-60
Identities = 109/173 (63%), Positives = 134/173 (77%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE+R P P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|XP_002700065.1| PREDICTED: ras homolog gene family, member G-like [Bos taurus].
Length = 191
Score = 198 bits (504), Expect = 6e-51
Identities = 94/173 (54%), Positives = 128/173 (73%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFPEEY+PTVFD+Y+ +V G+ +L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVILNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T++F+ICFS+ NP+SY NV+ +W PE+ P+VP +L+GT+ DLR D
Sbjct: 64 YDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDL 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
+T+ +L P + + G LAK +GA YLECSAL G++ VF EAI +
Sbjct: 124 ETVKKLKEQSLVPTSPQQGTSLAKQVGAVKYLECSALMHDGVREVFLEAIRAV 176
>ref|XP_609522.3| PREDICTED: ras homolog gene family, member G-like [Bos taurus].
Length = 191
Score = 198 bits (504), Expect = 6e-51
Identities = 94/173 (54%), Positives = 128/173 (73%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFPEEY+PTVFD+Y+ +V G+ +L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVILNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T++F+ICFS+ NP+SY NV+ +W PE+ P+VP +L+GT+ DLR D
Sbjct: 64 YDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDL 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
+T+ +L P + + G LAK +GA YLECSAL G++ VF EAI +
Sbjct: 124 ETVKKLKEQSLVPTSPQQGTSLAKQVGAVKYLECSALMHDGVREVFLEAIRAV 176
>ref|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos taurus].
Length = 191
Score = 196 bits (499), Expect = 2e-50
Identities = 96/173 (55%), Positives = 124/173 (71%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+ Y +AFP+EY+PTVFD+Y+ V G+ L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T+VF+ICFS+ +P SY NV+ +W PE+ P VP +L+GT+ DLR P
Sbjct: 64 YDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
TL RL + P+T + G LAK I A YLECSAL Q G+K VF EA+ +
Sbjct: 124 DTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAV 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,826,997
Number of extensions: 1197634
Number of successful extensions: 4441
Number of sequences better than 1.0e-05: 140
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 140
Length of query: 366
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,240,222
Effective search space: 3730938164
Effective search space used: 3730938164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854125.1| PREDICTED: similar to TC10-like Rho GTPase [Can... 389 e-108
Alignment gi|NP_001003254.1| cell division control protein 42 homolog pre... 244 8e-65
Alignment gi|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis fam... 244 8e-65
Alignment gi|XP_849332.1| PREDICTED: similar to cell division cycle 42 [C... 243 3e-64
Alignment gi|XP_858543.1| PREDICTED: similar to cell division cycle 42 is... 239 3e-63
Alignment gi|XP_849344.1| PREDICTED: similar to cell division cycle 42 is... 239 3e-63
Alignment gi|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 p... 233 3e-61
Alignment gi|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis fami... 229 3e-60
Alignment gi|XP_853772.1| PREDICTED: similar to cell division cycle 42 [C... 222 6e-58
Alignment gi|XP_531808.2| PREDICTED: similar to ras-like protein TC10 [Ca... 221 7e-58
>ref|XP_854125.1| PREDICTED: similar to TC10-like Rho GTPase [Canis familiaris].
Length = 357
Score = 389 bits (1000), Expect = e-108
Identities = 188/195 (96%), Positives = 191/195 (97%), Gaps = 1/195 (0%)
Frame = +3
Query: 516 MNCQEGKDRSCGC-GHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 692
M+C EG DRSCGC G E+KKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
Sbjct: 144 MHCPEGGDRSCGCSGTEDKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 203
Query: 693 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELR 872
TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL+
Sbjct: 204 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK 263
Query: 873 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 1052
DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
Sbjct: 264 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 323
Query: 1053 KGLKAVFDEAILTIF 1097
KGLKAVFDEAILTIF
Sbjct: 324 KGLKAVFDEAILTIF 338
>ref|NP_001003254.1| cell division control protein 42 homolog precursor [Canis lupus
familiaris].
Length = 191
Score = 244 bits (624), Expect = 8e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis familiaris].
Length = 191
Score = 244 bits (624), Expect = 8e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|XP_849332.1| PREDICTED: similar to cell division cycle 42 [Canis familiaris].
Length = 191
Score = 243 bits (619), Expect = 3e-64
Identities = 114/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVP VFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|XP_858543.1| PREDICTED: similar to cell division cycle 42 isoform 3 [Canis
familiaris].
Length = 193
Score = 239 bits (611), Expect = 3e-63
Identities = 115/173 (66%), Positives = 143/173 (82%), Gaps = 2/173 (1%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EY+PTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYMPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL-RDCM-PHVPYVLIGTQIDLRD 929
Y++LRPLSYP TDVFL+CFSVV+P+SY NV+E+WVPE+ C P P++L+GTQIDLRD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSYENVKEKWVPEITHHCQKPKTPFLLVGTQIDLRD 123
Query: 930 DPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
DP T+ +L K+KP+T E KLA+ + A Y++CSALTQKGLK VFDEAIL
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVKCSALTQKGLKNVFDEAIL 176
>ref|XP_849344.1| PREDICTED: similar to cell division cycle 42 isoform 2 [Canis
familiaris].
Length = 193
Score = 239 bits (611), Expect = 3e-63
Identities = 115/173 (66%), Positives = 143/173 (82%), Gaps = 2/173 (1%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EY+PTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYMPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL-RDCM-PHVPYVLIGTQIDLRD 929
Y++LRPLSYP TDVFL+CFSVV+P+SY NV+E+WVPE+ C P P++L+GTQIDLRD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSYENVKEKWVPEITHHCQKPKTPFLLVGTQIDLRD 123
Query: 930 DPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
DP T+ +L K+KP+T E KLA+ + A Y++CSALTQKGLK VFDEAIL
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVKCSALTQKGLKNVFDEAIL 176
>ref|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 precursor [Canis lupus
familiaris].
Length = 192
Score = 233 bits (593), Expect = 3e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis familiaris].
Length = 192
Score = 229 bits (585), Expect = 3e-60
Identities = 109/173 (63%), Positives = 136/173 (78%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVV DGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVEDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|XP_853772.1| PREDICTED: similar to cell division cycle 42 [Canis familiaris].
Length = 237
Score = 222 bits (565), Expect = 6e-58
Identities = 105/170 (61%), Positives = 133/170 (78%)
Frame = +3
Query: 579 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDY 758
+C+VVGDGA+GKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ H LGL DTAGQEDY
Sbjct: 5 ECIVVGDGAIGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPHTLGLSDTAGQEDY 64
Query: 759 NQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDPK 938
++L+ LSYP TDVF +CFSV +P+S+ NV+E+WVPE+ P P++L+ TQIDLRDDP
Sbjct: 65 DRLQLLSYPQTDVFRVCFSVFSPSSFENVKEKWVPEITHHCPKTPFLLVRTQIDLRDDPS 124
Query: 939 TLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ + K+KP+T E KLA + A Y+ECSALT+KGLK VFDE IL
Sbjct: 125 TIEKPAKNKQKPITPETAEKLACDLKAVKYVECSALTEKGLKNVFDEGIL 174
>ref|XP_531808.2| PREDICTED: similar to ras-like protein TC10 [Canis familiaris].
Length = 207
Score = 221 bits (564), Expect = 7e-58
Identities = 108/136 (79%), Positives = 122/136 (89%)
Frame = +3
Query: 687 AVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPE 866
AV+VTVGGKQ+LLGLYDTAGQEDY++LRPLSYP TDVFLICFSVVNPAS+ NV+EEWVPE
Sbjct: 49 AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 108
Query: 867 LRDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSAL 1046
L++ P+VP++LIGTQIDLRDDPKTLARL MKEKP+ E G KLAK IGA CY+ECSAL
Sbjct: 109 LKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 168
Query: 1047 TQKGLKAVFDEAILTI 1094
TQKGLK VFDEAI+ I
Sbjct: 169 TQKGLKTVFDEAIIAI 184
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,690,949
Number of extensions: 1241491
Number of successful extensions: 4911
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 4798
Number of HSP's successfully gapped: 133
Length of query: 366
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 262
Effective length of database: 15,407,560
Effective search space: 4036780720
Effective search space used: 4036780720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065714.1| rho-related GTP-binding protein RhoJ precursor ... 391 e-109
Alignment gi|NP_036381.2| rho-related GTP-binding protein RhoQ precursor ... 301 7e-82
Alignment gi|NP_001034891.1| cell division control protein 42 homolog iso... 244 8e-65
Alignment gi|NP_001782.1| cell division control protein 42 homolog isofor... 244 8e-65
Alignment gi|NP_426359.1| cell division control protein 42 homolog isofor... 243 2e-64
Alignment gi|NP_005043.1| ras-related C3 botulinum toxin substrate 3 prec... 233 2e-61
Alignment gi|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isof... 233 3e-61
Alignment gi|NP_002863.1| ras-related C3 botulinum toxin substrate 2 prec... 228 8e-60
Alignment gi|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isof... 221 9e-58
Alignment gi|NP_067028.1| rho-related GTP-binding protein RhoU [Homo sapi... 198 8e-51
>ref|NP_065714.1| rho-related GTP-binding protein RhoJ precursor [Homo sapiens].
Length = 214
Score = 391 bits (1005), Expect = e-109
Identities = 188/195 (96%), Positives = 192/195 (98%), Gaps = 1/195 (0%)
Frame = +3
Query: 516 MNCQEGKDRSCGC-GHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 692
MNC+EG D SCGC G++EKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
Sbjct: 1 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 60
Query: 693 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELR 872
TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL+
Sbjct: 61 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK 120
Query: 873 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 1052
DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
Sbjct: 121 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 180
Query: 1053 KGLKAVFDEAILTIF 1097
KGLKAVFDEAILTIF
Sbjct: 181 KGLKAVFDEAILTIF 195
>ref|NP_036381.2| rho-related GTP-binding protein RhoQ precursor [Homo sapiens].
Length = 205
Score = 301 bits (771), Expect = 7e-82
Identities = 146/174 (83%), Positives = 160/174 (91%)
Frame = +3
Query: 573 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQE 752
MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV+VTVGGKQ+LLGLYDTAGQE
Sbjct: 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68
Query: 753 DYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDD 932
DY++LRPLSYP TDVFLICFSVVNPAS+ NV+EEWVPEL++ P+VP++LIGTQIDLRDD
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 933 PKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
PKTLARL MKEKP+ E G KLAK IGA CY+ECSALTQKGLK VFDEAI+ I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>ref|NP_001034891.1| cell division control protein 42 homolog isoform 1 [Homo sapiens].
Length = 191
Score = 244 bits (624), Expect = 8e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|NP_001782.1| cell division control protein 42 homolog isoform 1 [Homo sapiens].
Length = 191
Score = 244 bits (624), Expect = 8e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|NP_426359.1| cell division control protein 42 homolog isoform 2 [Homo sapiens].
Length = 191
Score = 243 bits (621), Expect = 2e-64
Identities = 114/171 (66%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQ+GLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
>ref|NP_005043.1| ras-related C3 botulinum toxin substrate 3 precursor [Homo sapiens].
Length = 192
Score = 233 bits (594), Expect = 2e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R PH P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ RL K P+TY G+ +A+ IG+ YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isoform Rac1 [Homo
sapiens].
Length = 192
Score = 233 bits (593), Expect = 3e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_002863.1| ras-related C3 botulinum toxin substrate 2 precursor [Homo sapiens].
Length = 192
Score = 228 bits (581), Expect = 8e-60
Identities = 109/173 (63%), Positives = 134/173 (77%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE+R P P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isoform Rac1b [Homo
sapiens].
Length = 211
Score = 221 bits (563), Expect = 9e-58
Identities = 110/192 (57%), Positives = 137/192 (71%), Gaps = 19/192 (9%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNT-------------------DVFLICFSVVNPASYHNVQEEWVPELRDC 878
Y++LRPLSYP T DVFLICFS+V+PAS+ NV+ +W PE+R
Sbjct: 64 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 123
Query: 879 MPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKG 1058
P+ P +L+GT++DLRDD T+ +L K P+TY G+ +AK IGA YLECSALTQ+G
Sbjct: 124 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 183
Query: 1059 LKAVFDEAILTI 1094
LK VFDEAI +
Sbjct: 184 LKTVFDEAIRAV 195
>ref|NP_067028.1| rho-related GTP-binding protein RhoU [Homo sapiens].
Length = 258
Score = 198 bits (503), Expect = 8e-51
Identities = 96/178 (53%), Positives = 128/178 (71%)
Frame = +3
Query: 555 GHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLY 734
G E + +KCV+VGDGAVGKT L++SY + +P EY+PT FD+++ V+V G+ L L
Sbjct: 43 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLC 102
Query: 735 DTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQ 914
DTAGQ+++++LRPL Y NTD+FL+CFSVV+P+S+ NV E+WVPE+R P P +L+GTQ
Sbjct: 103 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 162
Query: 915 IDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
DLR+D K L L KEKP+ E A+ I A Y+ECSALTQK LK VFD AI+
Sbjct: 163 SDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIV 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,896,314
Number of extensions: 1219670
Number of successful extensions: 4389
Number of sequences better than 1.0e-05: 161
Number of HSP's gapped: 4250
Number of HSP's successfully gapped: 161
Length of query: 366
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,868,908
Effective search space: 3895653896
Effective search space used: 3895653896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075764.1| rho-related GTP-binding protein RhoJ precursor ... 385 e-107
Alignment gi|NP_663466.2| rho-related GTP-binding protein RhoQ precursor ... 301 8e-82
Alignment gi|NP_033991.1| cell division control protein 42 homolog isofor... 244 7e-65
Alignment gi|NP_001230698.1| cell division control protein 42 homolog iso... 243 1e-64
Alignment gi|NP_573486.1| ras-related C3 botulinum toxin substrate 3 prec... 233 2e-61
Alignment gi|NP_033033.1| ras-related C3 botulinum toxin substrate 1 prec... 233 3e-61
Alignment gi|NP_033034.1| ras-related C3 botulinum toxin substrate 2 prec... 228 8e-60
Alignment gi|NP_062512.1| rho-related GTP-binding protein RhoG precursor ... 196 2e-50
Alignment gi|NP_598716.1| rho-related GTP-binding protein RhoU [Mus muscu... 196 2e-50
Alignment gi|NP_001155245.1| ras homolog gene family, member A [Mus muscu... 189 3e-48
>ref|NP_075764.1| rho-related GTP-binding protein RhoJ precursor [Mus musculus].
Length = 214
Score = 385 bits (990), Expect = e-107
Identities = 185/195 (94%), Positives = 190/195 (97%), Gaps = 1/195 (0%)
Frame = +3
Query: 516 MNCQEGKDRSCGC-GHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 692
M+C+E D SCGC GHEE ++LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
Sbjct: 1 MSCRERTDSSCGCNGHEENRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV 60
Query: 693 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELR 872
TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPEL+
Sbjct: 61 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK 120
Query: 873 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 1052
DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
Sbjct: 121 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ 180
Query: 1053 KGLKAVFDEAILTIF 1097
KGLKAVFDEAILTIF
Sbjct: 181 KGLKAVFDEAILTIF 195
>ref|NP_663466.2| rho-related GTP-binding protein RhoQ precursor [Mus musculus].
Length = 205
Score = 301 bits (770), Expect = 8e-82
Identities = 146/174 (83%), Positives = 160/174 (91%)
Frame = +3
Query: 573 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQE 752
MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV+VTVGGKQ+LLGLYDTAGQE
Sbjct: 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68
Query: 753 DYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDD 932
DY++LRPLSYP TDVFLICFSVVNPAS+ NV+EEWVPEL++ P+VP++LIGTQIDLRDD
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 933 PKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
PKTLARL MKEKP+ E G KLAK IGA CY+ECSALTQKGLK VFDEAI+ I
Sbjct: 129 PKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>ref|NP_033991.1| cell division control protein 42 homolog isoform 1 precursor [Mus
musculus].
Length = 191
Score = 244 bits (624), Expect = 7e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|NP_001230698.1| cell division control protein 42 homolog isoform 2 [Mus musculus].
Length = 191
Score = 243 bits (621), Expect = 1e-64
Identities = 114/171 (66%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQ+GLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
>ref|NP_573486.1| ras-related C3 botulinum toxin substrate 3 precursor [Mus musculus].
Length = 192
Score = 233 bits (594), Expect = 2e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R PH P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ RL K P+TY G+ +A+ IG+ YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_033033.1| ras-related C3 botulinum toxin substrate 1 precursor [Mus musculus].
Length = 192
Score = 233 bits (593), Expect = 3e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_033034.1| ras-related C3 botulinum toxin substrate 2 precursor [Mus musculus].
Length = 192
Score = 228 bits (580), Expect = 8e-60
Identities = 109/173 (63%), Positives = 134/173 (77%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE+R P P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|NP_062512.1| rho-related GTP-binding protein RhoG precursor [Mus musculus].
Length = 191
Score = 196 bits (499), Expect = 2e-50
Identities = 96/173 (55%), Positives = 124/173 (71%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+ Y +AFP+EY+PTVFD+Y+ V G+ L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T+VF+ICFS+ +P SY NV+ +W PE+ P VP +L+GT+ DLR P
Sbjct: 64 YDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
TL RL + P+T + G LAK I A YLECSAL Q G+K VF EA+ +
Sbjct: 124 DTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAV 176
>ref|NP_598716.1| rho-related GTP-binding protein RhoU [Mus musculus].
Length = 261
Score = 196 bits (499), Expect = 2e-50
Identities = 95/178 (53%), Positives = 127/178 (71%)
Frame = +3
Query: 555 GHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLY 734
G E + +KCV+VGDGAVGKT L++SY + +P EY+PT FD+++ V+V G+ L L
Sbjct: 46 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLC 105
Query: 735 DTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQ 914
DTAGQ+++++LRPL Y NTD+FL+CFSVV+P S+ NV E+WVPE+R P P +L+GTQ
Sbjct: 106 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPEIRRHCPKAPIILVGTQ 165
Query: 915 IDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
DLR+D K L L KEKP+ E A+ + A Y+ECSALTQK LK VFD AI+
Sbjct: 166 SDLREDVKVLIELDKCKEKPVPEEAAKLCAEEVKAVSYIECSALTQKNLKEVFDAAIV 223
>ref|NP_001155245.1| ras homolog gene family, member A [Mus musculus].
Length = 193
Score = 189 bits (481), Expect = 3e-48
Identities = 89/168 (52%), Positives = 124/168 (73%)
Frame = +3
Query: 579 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDY 758
K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V GKQ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 759 NQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDPK 938
++LRPLSYP+TDV L+CFS+ NP S+ N+ +W+PE++ P+VP +L+G++ DLR+D
Sbjct: 67 DRLRPLSYPDTDVLLLCFSIGNPDSFGNIPHKWIPEVKHFCPNVPIILVGSKKDLRNDFY 126
Query: 939 TLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEA 1082
T+ L K+ P+ E G LA +IGA Y+ECSA T+ G++ VF++A
Sbjct: 127 TIQELAKRKQAPVRPEQGQGLANSIGAFEYVECSAKTKDGVRRVFEKA 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,197,429
Number of extensions: 1020967
Number of successful extensions: 3568
Number of sequences better than 1.0e-05: 124
Number of HSP's gapped: 3474
Number of HSP's successfully gapped: 124
Length of query: 366
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 263
Effective length of database: 12,523,851
Effective search space: 3293772813
Effective search space used: 3293772813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161889.1| rho-related GTP-binding protein RhoJ [Sus sc... 405 e-113
Alignment gi|XP_003356236.1| PREDICTED: cell division control protein 42 ... 244 5e-65
Alignment gi|NP_001072148.1| cell division control protein 42 homolog pre... 244 8e-65
Alignment gi|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (... 233 2e-61
Alignment gi|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin su... 228 5e-60
Alignment gi|XP_003362241.1| PREDICTED: rho-related GTP-binding protein R... 200 1e-51
Alignment gi|XP_003135221.2| PREDICTED: rho-related GTP-binding protein R... 200 1e-51
Alignment gi|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus sc... 197 9e-51
Alignment gi|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus sc... 188 5e-48
Alignment gi|XP_003125894.1| PREDICTED: rho-related GTP-binding protein R... 187 1e-47
>ref|NP_001161889.1| rho-related GTP-binding protein RhoJ [Sus scrofa].
Length = 213
Score = 405 bits (1041), Expect = e-113
Identities = 193/194 (99%), Positives = 193/194 (99%)
Frame = +3
Query: 516 MNCQEGKDRSCGCGHEEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVT 695
MNCQEGKDRSCGCGHEEKKML CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVT
Sbjct: 1 MNCQEGKDRSCGCGHEEKKMLNCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVT 60
Query: 696 VTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRD 875
VTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRD
Sbjct: 61 VTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRD 120
Query: 876 CMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQK 1055
CMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQK
Sbjct: 121 CMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQK 180
Query: 1056 GLKAVFDEAILTIF 1097
GLKAVFDEAILTIF
Sbjct: 181 GLKAVFDEAILTIF 194
>ref|XP_003356236.1| PREDICTED: cell division control protein 42 homolog [Sus scrofa].
Length = 191
Score = 244 bits (624), Expect = 5e-65
Identities = 115/171 (67%), Positives = 142/171 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL 1088
T+ +L K+KP+T E KLA+ + A Y+ECSALTQKGLK VFDEAIL
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>ref|NP_001072148.1| cell division control protein 42 homolog precursor [Sus scrofa].
Length = 191
Score = 244 bits (622), Expect = 8e-65
Identities = 114/172 (66%), Positives = 143/172 (83%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAVTV +GG+ + LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFL+CFSVV+P+S+ NV+E+WVPE+ P P++L+GTQIDLRDDP
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILT 1091
T+ +L K+KP+T E KLA+ + A Y+ECSALTQ+GLK VFDEAIL+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILS 175
>ref|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP
binding protein Rac1) [Sus scrofa].
Length = 192
Score = 233 bits (593), Expect = 2e-61
Identities = 110/173 (63%), Positives = 137/173 (79%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V GK LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PAS+ NV+ +W PE+R P+ P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ +AK IGA YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin substrate 2-like [Sus
scrofa].
Length = 192
Score = 228 bits (581), Expect = 5e-60
Identities = 109/173 (63%), Positives = 134/173 (77%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFP EY+PTVFD+Y+ V V K LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LRPLSYP TDVFLICFS+V+PASY NV+ +W PE+R P P +L+GT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
T+ +L K P+TY G+ LAK I + YLECSALTQ+GLK VFDEAI +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>ref|XP_003362241.1| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 200 bits (509), Expect = 1e-51
Identities = 95/173 (54%), Positives = 127/173 (73%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFPEEY+PTVFD+Y+ +V G+ L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T++F+ICFS+ NP+SY NV+ +W PE+ P+VP +L+GT+ DLR D
Sbjct: 64 YDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDL 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
+T+ +L P T + G LAK +GA YLECSAL Q G+ VF EA+ +
Sbjct: 124 ETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALMQDGVHEVFSEAVRAV 176
>ref|XP_003135221.2| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 200 bits (509), Expect = 1e-51
Identities = 95/173 (54%), Positives = 127/173 (73%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+SY +AFPEEY+PTVFD+Y+ +V G+ L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T++F+ICFS+ NP+SY NV+ +W PE+ P+VP +L+GT+ DLR D
Sbjct: 64 YDRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDL 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
+T+ +L P T + G LAK +GA YLECSAL Q G+ VF EA+ +
Sbjct: 124 ETVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSALMQDGVHEVFSEAVRAV 176
>ref|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus scrofa].
Length = 191
Score = 197 bits (501), Expect = 9e-51
Identities = 96/173 (55%), Positives = 124/173 (71%)
Frame = +3
Query: 576 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQED 755
+KCVVVGDGAVGKTCLL+ Y +AFP+EY+PTVFD+Y+ V G+ L L+DTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEE 63
Query: 756 YNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDP 935
Y++LR LSYP T+VF+ICFS+ +P SY NV+ +W PE+ P VP +L+GT+ DLR P
Sbjct: 64 YDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRSQP 123
Query: 936 KTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 1094
TL RL + P+T + G LAK I A YLECSAL Q G+K VF EA+ +
Sbjct: 124 DTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAV 176
>ref|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus scrofa].
Length = 193
Score = 188 bits (477), Expect = 5e-48
Identities = 89/168 (52%), Positives = 121/168 (72%)
Frame = +3
Query: 579 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDY 758
K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V GKQ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 759 NQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDPK 938
++LRPLSYP+TDV L+CFS+ +P S N+ E+W PE++ P+VP +L+G + DLR+D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 939 TLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEA 1082
T L MK++P+ E G +A IGA Y+ECSA T+ G++ VF+ A
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
>ref|XP_003125894.1| PREDICTED: rho-related GTP-binding protein RhoC-like [Sus scrofa].
Length = 193
Score = 187 bits (474), Expect = 1e-47
Identities = 89/168 (52%), Positives = 120/168 (71%)
Frame = +3
Query: 579 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDY 758
K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V GKQ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 759 NQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELRDCMPHVPYVLIGTQIDLRDDPK 938
++LRPLSYP+TDV L+CFS+ +P S N+ E+W PE++ P+VP +L+G + DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 939 TLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEA 1082
T L MK++P+ E G +A I A YLECSA T++G++ VF+ A
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,611,295
Number of extensions: 771290
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 2889
Number of HSP's successfully gapped: 105
Length of query: 366
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,854,232
Effective search space: 2355225712
Effective search space used: 2355225712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007176
(1098 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 333 1e-88
Sscrofa_Chr03 109 3e-21
>Sscrofa_Chr01
|| Length = 315321322
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 747 caggaggactataaccagctgaggccgctctcctaccccaacacggatgtgtttttgatc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216785974 caggaggactataaccagctgaggccgctctcctaccccaacacggatgtgtttttgatc 216786033
Query: 807 tgcttctcggtggtaaatcctgcctcttaccacaacgtccaggaggagtgggtcccggag 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216786034 tgcttctcggtggtaaatcctgcctcttaccacaacgtccaggaggagtgggtcccggag 216786093
Query: 867 ctgagggactgcatgcctcacgtgccttacgtcctcatagggacccag 914
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216786094 ctgagggactgcatgcctcacgtgccttacgtcctcatagggacccag 216786141
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 911 ccagattgatctccgagatgaccccaaaaccttggcccgtttgctgtacatgaaagagaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216788912 ccagattgatctccgagatgaccccaaaaccttggcccgtttgctgtacatgaaagagaa 216788971
Query: 971 acctctcacttacgagcatggtgtgaagctggcaaaagcg 1010
||||||||||||||||||||||||||||||||||||||||
Sbjct: 216788972 acctctcacttacgagcatggtgtgaagctggcaaaagcg 216789011
Score = 167 bits (84), Expect = 2e-38
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1010 gatcggagcccagtgctacttggaatgctcggccctgacacaaaaaggtctcaaggcagt 1069
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 216796620 gatcggagcccagtgctacttggaatgctcggccctgacacagaaaggtctcaaggcagt 216796679
Query: 1070 ttttgatgaagcgatcctcaccattttc 1097
||||||||||||||||||||||||||||
Sbjct: 216796680 ttttgatgaagcgatcctcaccattttc 216796707
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 689 agttaccgtgacagtgggaggcaagcagcacttgctcggcctgtacgacactgcaggaca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216775655 agttaccgtgacagtgggaggcaagcagcacttgctcggcctgtacgacactgcaggaca 216775714
Query: 749 gg 750
||
Sbjct: 216775715 gg 216775716
>Sscrofa_Chr03
|| Length = 144787322
Score = 109 bits (55), Expect = 3e-21
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 572 gatgctcaagtgtgtggtggtgggggatggcgccgtggggaagacctgtctgctgatgag 631
|||||||||||| |||||||| || || || || ||||| ||||| || || || |||||
Sbjct: 100096689 gatgctcaagtgcgtggtggtcggcgacggggcggtgggcaagacttgcctactcatgag 100096630
Query: 632 ctacgccaatgacgccttcccagaggagtacgtgcccaccgtgtttgaccactacgcag 690
||| ||||| ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 100096629 ctatgccaacgacgccttcccggaggagtacgtgcccaccgtcttcgaccactacgcag 100096571
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,556,907
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 5
Length of query: 1098
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1077
Effective length of database: 2,808,413,156
Effective search space: 3024660969012
Effective search space used: 3024660969012
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)