Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015672.1| FAM134B protein [Bos taurus]. 515 e-146
Alignment gi|XP_001788330.2| PREDICTED: FAM134B protein-like, partial [Bo... 318 8e-87
Alignment gi|XP_002696040.1| PREDICTED: hypothetical protein [Bos taurus]. 195 8e-50
Alignment gi|XP_585317.2| PREDICTED: hypothetical protein [Bos taurus]. 195 8e-50
Alignment gi|XP_001255598.1| PREDICTED: hypothetical protein [Bos taurus]. 195 8e-50
Alignment gi|NP_001192537.1| hypothetical protein LOC507475 [Bos taurus]. 113 5e-25
Alignment gi|XP_002685626.1| PREDICTED: hypothetical protein LOC507475 [B... 113 5e-25
>ref|NP_001015672.1| FAM134B protein [Bos taurus].
Length = 356
Score = 515 bits (1326), Expect = e-146
Identities = 264/322 (81%), Positives = 275/322 (85%)
Frame = +3
Query: 606 ESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILG 785
+SWEVINSKPD+RPG SHC+AESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILG
Sbjct: 11 KSWEVINSKPDERPGFSHCLAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILG 70
Query: 786 SYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEA 965
SYIPGVI NDIGQKIYSKIKS LLKLDFGIREYINQK+RERSEA
Sbjct: 71 SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSCLLKLDFGIREYINQKKRERSEA 130
Query: 966 DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 1145
DKEKSHKDDSELDFSALCPKISLT AAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT
Sbjct: 131 DKEKSHKDDSELDFSALCPKISLTTAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 190
Query: 1146 SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERH 1325
SDDLDRPSEEVFSRDLSDFPSLENG GTNDEDELSLGLPTELKRKKEQLD GPR S E+
Sbjct: 191 SDDLDRPSEEVFSRDLSDFPSLENGTGTNDEDELSLGLPTELKRKKEQLDGGPRRSTEKK 250
Query: 1326 SAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPSXXXXXXXXX 1505
SAAGL+LPLSSDQT HLMS+LAG+VITAAVTAA+KDQL G +Q L+ AAPS
Sbjct: 251 SAAGLSLPLSSDQTLHLMSDLAGDVITAAVTAAVKDQLAGVRQALSQAAPSLGEDTDTEE 310
Query: 1506 XXXXXXXXQSELDQIESELGLS 1571
QSELDQIESELGLS
Sbjct: 311 GDDFELLDQSELDQIESELGLS 332
>ref|XP_001788330.2| PREDICTED: FAM134B protein-like, partial [Bos taurus].
Length = 185
Score = 318 bits (815), Expect = 8e-87
Identities = 158/183 (86%), Positives = 161/183 (87%)
Frame = +3
Query: 612 WEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY 791
WEVINSKPD+RPG SHC+AESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY
Sbjct: 1 WEVINSKPDERPGFSHCLAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY 60
Query: 792 IPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADK 971
IPGVI NDIGQKIYSKIKS LLKLDFGIREYINQK+RERSEADK
Sbjct: 61 IPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSCLLKLDFGIREYINQKKRERSEADK 120
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD 1151
EKSHKDDSELDFSALCPKISLT AAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD
Sbjct: 121 EKSHKDDSELDFSALCPKISLTTAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD 180
Query: 1152 DLD 1160
D
Sbjct: 181 APD 183
>ref|XP_002696040.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 466
Score = 195 bits (496), Expect = 8e-50
Identities = 118/341 (34%), Positives = 190/341 (55%), Gaps = 16/341 (4%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R+ L++ + V + K+ + + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRLVFLLAFSSMIIVCIDQWKNKIWPEIKVPRPGVLDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +LG YIPG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGILTFLAVLGRYIPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + ++Y ++K L +LDF +R Y+ K+RER ++
Sbjct: 193 SYLILVTVMMWPLAVYHRLWDRVYVRLKPALQRLDFSVRGYMMSKQRERQLRRRALHPER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
+ DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS G TP T+
Sbjct: 253 AADNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQL--DSGPRP 1310
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R GP
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINVDPTGLDDEDDTSIGMPSLMYRSPPGAGESQGPPA 372
Query: 1311 SKERHSAAGL---TLPLSSDQTFHLMSNLAGNVITAAVTAA 1424
S+E + L LP S+ T +L S ++ +I A++ A
Sbjct: 373 SREEAALPELLLGALPAGSNLTSNLASLVSQGMIQLALSGA 413
>ref|XP_585317.2| PREDICTED: hypothetical protein [Bos taurus].
Length = 466
Score = 195 bits (496), Expect = 8e-50
Identities = 118/341 (34%), Positives = 190/341 (55%), Gaps = 16/341 (4%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R+ L++ + V + K+ + + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRLVFLLAFSSMIIVCIDQWKNKIWPEIKVPRPGVLDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +LG YIPG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGILTFLAVLGRYIPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + ++Y ++K L +LDF +R Y+ K+RER ++
Sbjct: 193 SYLILVTVMMWPLAVYHRLWDRVYVRLKPALQRLDFSVRGYMMSKQRERQLRRRALHPER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
+ DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS G TP T+
Sbjct: 253 AADNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQL--DSGPRP 1310
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R GP
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINVDPTGLDDEDDTSIGMPSLMYRSPPGAGESQGPPA 372
Query: 1311 SKERHSAAGL---TLPLSSDQTFHLMSNLAGNVITAAVTAA 1424
S+E + L LP S+ T +L S ++ +I A++ A
Sbjct: 373 SREEAALPELLLGALPAGSNLTSNLASLVSQGMIQLALSGA 413
>ref|XP_001255598.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 466
Score = 195 bits (496), Expect = 8e-50
Identities = 118/341 (34%), Positives = 190/341 (55%), Gaps = 16/341 (4%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R+ L++ + V + K+ + + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRLVFLLAFSSMIIVCIDQWKNKIWPEIKVPRPGVLDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +LG YIPG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGILTFLAVLGRYIPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + ++Y ++K L +LDF +R Y+ K+RER ++
Sbjct: 193 SYLILVTVMMWPLAVYHRLWDRVYVRLKPALQRLDFSVRGYMMSKQRERQLRRRALHPER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
+ DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS G TP T+
Sbjct: 253 AADNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQL--DSGPRP 1310
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R GP
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINVDPTGLDDEDDTSIGMPSLMYRSPPGAGESQGPPA 372
Query: 1311 SKERHSAAGL---TLPLSSDQTFHLMSNLAGNVITAAVTAA 1424
S+E + L LP S+ T +L S ++ +I A++ A
Sbjct: 373 SREEAALPELLLGALPAGSNLTSNLASLVSQGMIQLALSGA 413
>ref|NP_001192537.1| hypothetical protein LOC507475 [Bos taurus].
Length = 541
Score = 113 bits (282), Expect = 5e-25
Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Frame = +3
Query: 459 NLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEV-INSKP 635
N LFW L+ + R + L+S+ +L ++ + + L + S+S ++P
Sbjct: 86 NGLFWLLSSSSLRPFFLLSISLLAYFLLDLWQPRFLPDISASSPEEPHSDSEGAGSGARP 145
Query: 636 D--DRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
P L +AESW+ F I LQE+ +K+Q+P +FC VCS C +LG Y+PG++
Sbjct: 146 HLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMI 205
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIR---EYINQKRRERSEADKE-- 974
+++ Q++Y++++ L++LD+ ++ + ++ K +R K
Sbjct: 206 SYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNAP 265
Query: 975 -------KSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGY 1127
+ +SE + + P + + A L+++D+++S E S ++G F++S
Sbjct: 266 PGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRAT 325
Query: 1128 TPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----LGLPTELK 1274
TPQ TD S+DLD+ S EE SR+L G +E +L+ LG P L
Sbjct: 326 TPQLTDVSEDLDQQSLPSEPEEALSREL----------GEGEETDLAPPEDLLGPPQALS 375
Query: 1275 RKKEQLD 1295
R+ L+
Sbjct: 376 RQDLDLE 382
>ref|XP_002685626.1| PREDICTED: hypothetical protein LOC507475 [Bos taurus].
Length = 541
Score = 113 bits (282), Expect = 5e-25
Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Frame = +3
Query: 459 NLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEV-INSKP 635
N LFW L+ + R + L+S+ +L ++ + + L + S+S ++P
Sbjct: 86 NGLFWLLSSSSLRPFFLLSISLLAYFLLDLWQPRFLPDISASSPEEPHSDSEGAGSGARP 145
Query: 636 D--DRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
P L +AESW+ F I LQE+ +K+Q+P +FC VCS C +LG Y+PG++
Sbjct: 146 HLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMI 205
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIR---EYINQKRRERSEADKE-- 974
+++ Q++Y++++ L++LD+ ++ + ++ K +R K
Sbjct: 206 SYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNAP 265
Query: 975 -------KSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGY 1127
+ +SE + + P + + A L+++D+++S E S ++G F++S
Sbjct: 266 PGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRAT 325
Query: 1128 TPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----LGLPTELK 1274
TPQ TD S+DLD+ S EE SR+L G +E +L+ LG P L
Sbjct: 326 TPQLTDVSEDLDQQSLPSEPEEALSREL----------GEGEETDLAPPEDLLGPPQALS 375
Query: 1275 RKKEQLD 1295
R+ L+
Sbjct: 376 RQDLDLE 382
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,585,691
Number of extensions: 1241839
Number of successful extensions: 4279
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4226
Number of HSP's successfully gapped: 7
Length of query: 524
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,140,958
Effective search space: 5896779486
Effective search space used: 5896779486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536520.2| PREDICTED: hypothetical protein XP_536520 [Cani... 505 e-143
Alignment gi|XP_548087.2| PREDICTED: hypothetical protein XP_548087 [Cani... 176 6e-44
Alignment gi|XP_545655.2| PREDICTED: similar to Protein C2orf17 homolog [... 105 2e-22
>ref|XP_536520.2| PREDICTED: hypothetical protein XP_536520 [Canis familiaris].
Length = 574
Score = 505 bits (1301), Expect = e-143
Identities = 258/321 (80%), Positives = 273/321 (85%)
Frame = +3
Query: 609 SWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGS 788
+WEV+NSKPD+RP SHCIAESWMNFS+FLQEMS+FKQQSPGKFCLLVCSVCTFFTILGS
Sbjct: 230 AWEVVNSKPDERPRFSHCIAESWMNFSLFLQEMSLFKQQSPGKFCLLVCSVCTFFTILGS 289
Query: 789 YIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEAD 968
YIPGVI NDIGQKIYSKIKS LLKLDFGI EYINQK+R+RSEAD
Sbjct: 290 YIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRKRSEAD 349
Query: 969 KEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS 1148
KEKSHKDDSELD SALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS
Sbjct: 350 KEKSHKDDSELDLSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS 409
Query: 1149 DDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHS 1328
DDLDRPSEEVFSRDLSDFPS+ENGMGTNDEDE SLGLPTE +R+KEQLDSG R S+ER S
Sbjct: 410 DDLDRPSEEVFSRDLSDFPSVENGMGTNDEDEFSLGLPTEQRRRKEQLDSGVRTSRERQS 469
Query: 1329 AAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPSXXXXXXXXXX 1508
AAGL+LPLSSDQTFHLM NLAG+ ITAAVTAAIK+QLEGAQQ L+ AAPS
Sbjct: 470 AAGLSLPLSSDQTFHLMRNLAGDAITAAVTAAIKEQLEGAQQALSQAAPSPGDDTDTEEG 529
Query: 1509 XXXXXXXQSELDQIESELGLS 1571
QSELDQIESELGLS
Sbjct: 530 DDFELLDQSELDQIESELGLS 550
>ref|XP_548087.2| PREDICTED: hypothetical protein XP_548087 [Canis familiaris].
Length = 369
Score = 176 bits (446), Expect = 6e-44
Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 11/295 (3%)
Frame = +3
Query: 603 SESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTIL 782
+ESW ++ + P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +L
Sbjct: 27 NESWGFVHPRLLSVPELCHHVAEVWVSGTIFIRNLVLFKKQNPGKFCLLSCGILTFLAVL 86
Query: 783 GSYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS- 959
G YIPG++ + + + Y ++K L +LDF +R Y+ K+RER
Sbjct: 87 GRYIPGLLLSYLILVTVMTWPLAVYHRLWDRAYVRLKPALQRLDFSVRGYMMSKQRERQL 146
Query: 960 -----EADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLS 1118
++ + DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS
Sbjct: 147 CRRALYPERALDNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLS 206
Query: 1119 EGYTPQTDTSDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQ 1289
G TP T+ S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P + R
Sbjct: 207 RGQTPLTEGSEDLDGHSDPEESFARDLPDFPSINVDPAGLDDEDDTSIGMPNLMYRSPPG 266
Query: 1290 LDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQ 1454
P + A L L S SNL N+ + I L GA Q
Sbjct: 267 AGELQNPPASQDEAVLPELLLGS---LPAGSNLTSNLASLVSQGMIHLALSGASQ 318
>ref|XP_545655.2| PREDICTED: similar to Protein C2orf17 homolog [Canis familiaris].
Length = 513
Score = 105 bits (261), Expect = 2e-22
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 20/238 (8%)
Frame = +3
Query: 645 PGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIXXXXXX 824
P L +AESW+ F I LQE+ +K+Q+P +FC VCS C +LG Y+PG++
Sbjct: 121 PELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVL 180
Query: 825 XXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYI-------NQKRRERSEA-----D 968
+++ Q++Y++++ L++LD+ ++ ++K+R+ A +
Sbjct: 181 LSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKKKRQGKNAPPGGDE 240
Query: 969 KEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQ-T 1139
+ +SE + + P + + A L+++D+++S E S ++G F++S TPQ T
Sbjct: 241 PLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLT 300
Query: 1140 DTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDS 1298
D S+DLD+ S EE SR+L + E E LG P L R + LDS
Sbjct: 301 DVSEDLDQQSLPSEPEEALSRELGEGEETEPA-----PPEDLLGPPQALSR--QDLDS 351
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,319,924
Number of extensions: 1230346
Number of successful extensions: 4135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4118
Number of HSP's successfully gapped: 3
Length of query: 524
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,307,552
Effective search space: 6383249184
Effective search space used: 6383249184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030022.1| FAM134B protein isoform 1 [Homo sapiens]. 659 0.0
Alignment gi|NP_061873.2| FAM134B protein isoform 2 [Homo sapiens]. 523 e-148
Alignment gi|NP_835227.1| hypothetical protein LOC162427 [Homo sapiens]. 196 4e-50
Alignment gi|NP_077269.3| hypothetical protein LOC79137 [Homo sapiens]. 118 1e-26
>ref|NP_001030022.1| FAM134B protein isoform 1 [Homo sapiens].
Length = 497
Score = 659 bits (1700), Expect = 0.0
Identities = 338/405 (83%), Positives = 347/405 (85%)
Frame = +3
Query: 357 TWLLGEPVLWLGCRADEXXXXXXXXXXXXAFIGANLLFWFLALTPWRVYHLISVIILGRV 536
TWLLGEPVLWLGCRADE F+ ANLLFWFLALTPWRVYHLISV+ILGRV
Sbjct: 69 TWLLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRV 128
Query: 537 IMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVF 716
IMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPD+RP LSHCIAESWMNFSIFLQEMS+F
Sbjct: 129 IMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLF 188
Query: 717 KQQSPGKFCLLVCSVCTFFTILGSYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKS 896
KQQSPGKFCLLVCSVCTFFTILGSYIPGVI NDIGQKIYSKIKS
Sbjct: 189 KQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKS 248
Query: 897 FLLKLDFGIREYINQKRRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV 1076
LLKLDFGI EYINQK+RERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV
Sbjct: 249 VLLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV 308
Query: 1077 SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLG 1256
SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLG
Sbjct: 309 SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLG 368
Query: 1257 LPTELKRKKEQLDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQ 1436
LPTELKRKKEQLDSG RPSKE SAAGLTLPL+SDQTFHLMSNLAG+VITAAVTAAIKDQ
Sbjct: 369 LPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAAVTAAIKDQ 428
Query: 1437 LEGAQQVLTXAAPSXXXXXXXXXXXXXXXXXQSELDQIESELGLS 1571
LEG QQ L+ AAP QSELDQIESELGL+
Sbjct: 429 LEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLT 473
>ref|NP_061873.2| FAM134B protein isoform 2 [Homo sapiens].
Length = 356
Score = 523 bits (1347), Expect = e-148
Identities = 270/322 (83%), Positives = 278/322 (86%)
Frame = +3
Query: 606 ESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILG 785
+SWEVINSKPD+RP LSHCIAESWMNFSIFLQEMS+FKQQSPGKFCLLVCSVCTFFTILG
Sbjct: 11 KSWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG 70
Query: 786 SYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEA 965
SYIPGVI NDIGQKIYSKIKS LLKLDFGI EYINQK+RERSEA
Sbjct: 71 SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEA 130
Query: 966 DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 1145
DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT
Sbjct: 131 DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 190
Query: 1146 SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERH 1325
SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSG RPSKE
Sbjct: 191 SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQ 250
Query: 1326 SAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPSXXXXXXXXX 1505
SAAGLTLPL+SDQTFHLMSNLAG+VITAAVTAAIKDQLEG QQ L+ AAP
Sbjct: 251 SAAGLTLPLNSDQTFHLMSNLAGDVITAAVTAAIKDQLEGVQQALSQAAPIPEEDTDTEE 310
Query: 1506 XXXXXXXXQSELDQIESELGLS 1571
QSELDQIESELGL+
Sbjct: 311 GDDFELLDQSELDQIESELGLT 332
>ref|NP_835227.1| hypothetical protein LOC162427 [Homo sapiens].
Length = 466
Score = 196 bits (499), Expect = 4e-50
Identities = 120/354 (33%), Positives = 190/354 (53%), Gaps = 11/354 (3%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R+ L++ ++ V + K+ + + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRLVFLLAFGLMIIVCIDQWKNKIWPEIKVPRPDALDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +LG Y+PG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNVLLFKKQNPGKFCLLSCGILTFLAVLGRYVPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + + Y ++K L +LDF +R Y+ K+RER ++
Sbjct: 193 SYLMLVTVMMWPLAVYHRLWDRAYVRLKPALQRLDFSVRGYMMSKQRERQLRRRALHPER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
+ DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS G TP T+
Sbjct: 253 AMDNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSK 1316
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R + P
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINMDPAGLDDEDDTSIGMPSLMYRSPPGAEEPQAPPA 372
Query: 1317 ERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPS 1478
R AA LP + SNL N+ + I+ L GA Q AP+
Sbjct: 373 SRDEAA---LPELLLGALPVGSNLTSNLASLVSQGMIQLALSGASQPGPSGAPA 423
>ref|NP_077269.3| hypothetical protein LOC79137 [Homo sapiens].
Length = 543
Score = 118 bits (296), Expect = 1e-26
Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 28/332 (8%)
Frame = +3
Query: 459 NLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEV-INSKP 635
N LFW L+ + R + L+SV +L ++ + + L + S+S ++P
Sbjct: 90 NGLFWLLSSSSLRPFFLLSVSLLAYFLLDLWQPRFLPDVSASSPEEPHSDSEGAGSGARP 149
Query: 636 D--DRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
P L +AESW+ F I LQE+ +K+Q+P +FC+ VCS C +LG Y+PG++
Sbjct: 150 HLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMI 209
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADKEKSH-- 983
+++ Q++Y++++ L++LD+ ++ N + + ++ +
Sbjct: 210 SYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEANALHHKHDKRKRQGKNAP 269
Query: 984 ----------KDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGY 1127
+ +SE + + P + + A L+++D+++S E S ++G F++S
Sbjct: 270 PGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRAT 329
Query: 1128 TPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----LGLPTELK 1274
TPQ TD S+DLD+ S EE SRDL G +E EL+ LG P L
Sbjct: 330 TPQLTDVSEDLDQQSLPSEPEETLSRDL----------GEGEEGELAPPEDLLGRPQALS 379
Query: 1275 RKKEQLDSGPRPSKERHSAAGLTLPLSSDQTF 1370
R + LDS +E +A L LSS F
Sbjct: 380 R--QALDS--EEEEEDVAAKETLLRLSSPLHF 407
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,339,584
Number of extensions: 1204455
Number of successful extensions: 4238
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4215
Number of HSP's successfully gapped: 4
Length of query: 524
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,770,016
Effective search space: 6159096672
Effective search space used: 6159096672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030023.1| family with sequence similarity 134, member ... 636 0.0
Alignment gi|NP_079735.2| family with sequence similarity 134, member B i... 504 e-143
Alignment gi|NP_080777.1| hypothetical protein LOC67998 isoform 1 [Mus mu... 188 9e-48
Alignment gi|NP_083209.1| hypothetical protein LOC67998 isoform 2 [Mus mu... 122 1e-27
Alignment gi|NP_739561.2| hypothetical protein LOC227298 [Mus musculus]. 109 7e-24
>ref|NP_001030023.1| family with sequence similarity 134, member B isoform 1 [Mus
musculus].
Length = 480
Score = 636 bits (1640), Expect = 0.0
Identities = 325/405 (80%), Positives = 342/405 (84%)
Frame = +3
Query: 357 TWLLGEPVLWLGCRADEXXXXXXXXXXXXAFIGANLLFWFLALTPWRVYHLISVIILGRV 536
TWLLGEPVLWLG RADE F+GANLLFWFLALTPWRVYHLISV+ILGRV
Sbjct: 52 TWLLGEPVLWLGWRADELLSWKRPLRSLLTFLGANLLFWFLALTPWRVYHLISVMILGRV 111
Query: 537 IMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVF 716
IMQIIK+MVLSRTRGAQLWRSL+ESWEVINSKPD+R LS CIAESWMNFS+FLQEMS+F
Sbjct: 112 IMQIIKEMVLSRTRGAQLWRSLTESWEVINSKPDERARLSQCIAESWMNFSMFLQEMSLF 171
Query: 717 KQQSPGKFCLLVCSVCTFFTILGSYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKS 896
KQQSPGKFCLLVCSVCTFFTILGSYIPGVI NDIGQKIYSK+KS
Sbjct: 172 KQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLFAFLCPLFKCNDIGQKIYSKVKS 231
Query: 897 FLLKLDFGIREYINQKRRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV 1076
LLKLDFGI EYINQK+RERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV
Sbjct: 232 ILLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDV 291
Query: 1077 SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLG 1256
SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENG GTNDEDELSLG
Sbjct: 292 SEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGTGTNDEDELSLG 351
Query: 1257 LPTELKRKKEQLDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQ 1436
LPTELKRKK+QLDS RPSKER SAAGL+LPL SDQ HLMSNLAG+VITAA+TAAIKDQ
Sbjct: 352 LPTELKRKKQQLDSAHRPSKERQSAAGLSLPLKSDQALHLMSNLAGDVITAAMTAAIKDQ 411
Query: 1437 LEGAQQVLTXAAPSXXXXXXXXXXXXXXXXXQSELDQIESELGLS 1571
LEGA+Q LT AP+ Q+ELDQIESELGL+
Sbjct: 412 LEGARQALTQVAPTAGEDTDTEEGDDFELLDQAELDQIESELGLT 456
>ref|NP_079735.2| family with sequence similarity 134, member B isoform 2 [Mus
musculus].
Length = 356
Score = 504 bits (1299), Expect = e-143
Identities = 259/321 (80%), Positives = 272/321 (84%)
Frame = +3
Query: 609 SWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGS 788
SWEVINSKPD+R LS CIAESWMNFS+FLQEMS+FKQQSPGKFCLLVCSVCTFFTILGS
Sbjct: 12 SWEVINSKPDERARLSQCIAESWMNFSMFLQEMSLFKQQSPGKFCLLVCSVCTFFTILGS 71
Query: 789 YIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEAD 968
YIPGVI NDIGQKIYSK+KS LLKLDFGI EYINQK+RERSEAD
Sbjct: 72 YIPGVILSYLLLLFAFLCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERSEAD 131
Query: 969 KEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS 1148
KEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS
Sbjct: 132 KEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTS 191
Query: 1149 DDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHS 1328
DDLDRPSEEVFSRDLSDFPSLENG GTNDEDELSLGLPTELKRKK+QLDS RPSKER S
Sbjct: 192 DDLDRPSEEVFSRDLSDFPSLENGTGTNDEDELSLGLPTELKRKKQQLDSAHRPSKERQS 251
Query: 1329 AAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPSXXXXXXXXXX 1508
AAGL+LPL SDQ HLMSNLAG+VITAA+TAAIKDQLEGA+Q LT AP+
Sbjct: 252 AAGLSLPLKSDQALHLMSNLAGDVITAAMTAAIKDQLEGARQALTQVAPTAGEDTDTEEG 311
Query: 1509 XXXXXXXQSELDQIESELGLS 1571
Q+ELDQIESELGL+
Sbjct: 312 DDFELLDQAELDQIESELGLT 332
>ref|NP_080777.1| hypothetical protein LOC67998 isoform 1 [Mus musculus].
Length = 466
Score = 188 bits (478), Expect = 9e-48
Identities = 116/340 (34%), Positives = 184/340 (54%), Gaps = 12/340 (3%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R L++ ++ V + K+ + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRFVFLLAFSLMIIVCIDQWKNKIWPEINVPRPDALDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C V TF +LG YIPG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGVLTFLAMLGRYIPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + + Y ++K L +LDF +R Y+ K+RER +++
Sbjct: 193 SYLMLVIIMMWPLAVYHRLWDRAYVRLKPVLQRLDFSVRGYMMSKQRERQLRRRALHSER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
DSE + +A CP++ + A+EL+++D++ S EVS T+NGTFNLS G TP T+
Sbjct: 253 ATDSHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTENGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKKEQL-DSGPRPS 1313
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R D+ P+
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINVDPAGLDDEDDTSIGMPSLMYRSPPGAGDTQVLPA 372
Query: 1314 KERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKD 1433
+A L S +L SNLA V + A+ +
Sbjct: 373 SRNEAALPELLLSSLPGGSNLTSNLASLVSQGMIQLALSE 412
>ref|NP_083209.1| hypothetical protein LOC67998 isoform 2 [Mus musculus].
Length = 285
Score = 122 bits (305), Expect = 1e-27
Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 12/231 (5%)
Frame = +3
Query: 777 ILGSYIPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRER 956
+LG YIPG++ + + + Y ++K L +LDF +R Y+ K+RER
Sbjct: 1 MLGRYIPGLLLSYLMLVIIMMWPLAVYHRLWDRAYVRLKPVLQRLDFSVRGYMMSKQRER 60
Query: 957 S------EADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFN 1112
+++ DSE + +A CP++ + A+EL+++D++ S EVS T+NGTFN
Sbjct: 61 QLRRRALHSERATDSHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTENGTFN 120
Query: 1113 LSEGYTPQTDTSDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKK 1283
LS G TP T+ S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ + R
Sbjct: 121 LSRGQTPLTEGSEDLDGHSDPEESFARDLPDFPSINVDPAGLDDEDDTSIGMPSLMYRSP 180
Query: 1284 EQL-DSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKD 1433
D+ P+ +A L S +L SNLA V + A+ +
Sbjct: 181 PGAGDTQVLPASRNEAALPELLLSSLPGGSNLTSNLASLVSQGMIQLALSE 231
>ref|NP_739561.2| hypothetical protein LOC227298 [Mus musculus].
Length = 541
Score = 109 bits (272), Expect = 7e-24
Identities = 85/327 (25%), Positives = 153/327 (46%), Gaps = 29/327 (8%)
Frame = +3
Query: 459 NLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPD 638
N LFW L+ + R + L+S+ +L ++ + L S+S E S
Sbjct: 85 NGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSAPPPEEPHSDS-EGAGSGAQ 143
Query: 639 DR----PGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVI 806
P L +AESW+ F I LQE+ +K+Q+P +FC C+ C +LG Y+PGV+
Sbjct: 144 PHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVM 203
Query: 807 XXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIR---EYINQKRRERSEADKE- 974
+++ Q++Y++++ L++LD+ ++ + ++ K +R K
Sbjct: 204 ISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSA 263
Query: 975 --------KSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEG 1124
+ +SE + + P + + A L+++D+++S E S ++G F++S
Sbjct: 264 PPAGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRA 323
Query: 1125 YTPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----LGLPTEL 1271
TPQ TD S+DLD+ S EE +R+L G +E EL+ L P L
Sbjct: 324 TTPQLTDVSEDLDQQSLPSEPEEALNREL----------GEGEETELASPEDLLSAPPAL 373
Query: 1272 KRKKEQLDSGPRPSKERHSAAGLTLPL 1352
K+ LD+ + ++ + L+ PL
Sbjct: 374 --SKQALDTEEEGAADKEALLQLSSPL 398
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,866,518
Number of extensions: 1018136
Number of successful extensions: 3829
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3806
Number of HSP's successfully gapped: 5
Length of query: 524
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,433,743
Effective search space: 5197304574
Effective search space used: 5197304574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359776.1| PREDICTED: protein FAM134B-like, partial [Su... 553 e-158
Alignment gi|XP_003131432.1| PREDICTED: protein FAM134C-like [Sus scrofa]. 194 1e-49
Alignment gi|XP_003359778.1| PREDICTED: protein FAM134B-like [Sus scrofa]. 183 2e-46
Alignment gi|XP_001925601.2| PREDICTED: protein FAM134A [Sus scrofa]. 114 2e-25
>ref|XP_003359776.1| PREDICTED: protein FAM134B-like, partial [Sus scrofa].
Length = 344
Score = 553 bits (1426), Expect = e-158
Identities = 285/320 (89%), Positives = 285/320 (89%)
Frame = +3
Query: 612 WEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY 791
WEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY
Sbjct: 1 WEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSY 60
Query: 792 IPGVIXXXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADK 971
IPGVI NDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADK
Sbjct: 61 IPGVILSYLLLLCAFLCPLLKCNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADK 120
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD 1151
EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD
Sbjct: 121 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD 180
Query: 1152 DLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSA 1331
DLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSA
Sbjct: 181 DLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSA 240
Query: 1332 AGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTXAAPSXXXXXXXXXXX 1511
AGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLT AAPS
Sbjct: 241 AGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTQAAPSLGEDTDTEEGD 300
Query: 1512 XXXXXXQSELDQIESELGLS 1571
QSELDQIESELGLS
Sbjct: 301 DFELLDQSELDQIESELGLS 320
>ref|XP_003131432.1| PREDICTED: protein FAM134C-like [Sus scrofa].
Length = 466
Score = 194 bits (492), Expect = 1e-49
Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 16/341 (4%)
Frame = +3
Query: 450 IGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINS 629
+G N FWF ALT R+ L++ + V + K+ + + + +ESW ++
Sbjct: 73 LGLNAAFWFFALTSLRLVFLLAFSSMIIVCIDQWKNKIWPEIKVPRPDALDNESWGFVHP 132
Query: 630 KPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
+ P L H +AE W++ +IF++ + +FK+Q+PGKFCLL C + TF +LG YIPG++
Sbjct: 133 RLLSVPELCHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGILTFLAVLGRYIPGLLL 192
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERS------EADK 971
+ + + Y ++K L +LDF +R Y+ K+RER ++
Sbjct: 193 SYFILVAAMMWPLAVYHRLWDRAYVRLKPALQRLDFSVRGYMMSKQRERQSRRRALHPER 252
Query: 972 EKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGYTPQTDT 1145
+ DSE + +A CP++ + A+EL+++D++ S EVS TDNGTFNLS G TP T+
Sbjct: 253 AVDNHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTDNGTFNLSRGQTPLTEG 312
Query: 1146 SDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDELSLGLPTELKRKK--EQLDSGPRP 1310
S+DLD S EE F+RDL DFPS+ + G +DED+ S+G+P+ L R + GP
Sbjct: 313 SEDLDGHSDPEESFARDLPDFPSINVDPAGLDDEDDTSIGMPSLLYRSPPGAEAPQGPPA 372
Query: 1311 SKERHSAAGL---TLPLSSDQTFHLMSNLAGNVITAAVTAA 1424
S++ + L LP S T +L S ++ +I A++ A
Sbjct: 373 SRDEAALPELLLGALPTGSSLTSNLASLVSQGMIQLALSGA 413
>ref|XP_003359778.1| PREDICTED: protein FAM134B-like [Sus scrofa].
Length = 221
Score = 183 bits (465), Expect = 2e-46
Identities = 106/202 (52%), Positives = 106/202 (52%)
Frame = +3
Query: 3 PGRRPASAGADVTRHPXXXXXXXXXXTRTRRPLCXXXXXXXXXXXXXXXXXXLLKMASPA 182
PGRRPASAGADVTRHP TRTRRPLC LLKMASPA
Sbjct: 19 PGRRPASAGADVTRHPAARAPRCAPRTRTRRPLCATPRHARARARARPRPPALLKMASPA 78
Query: 183 PKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTW 362
PK TW
Sbjct: 79 PKEPAAQGCPAPAAAEQAPPPRAPAEEQEKEAPEEGAAAAAGAGPQVEEAAGGVAAAVTW 138
Query: 363 LLGEPVLWLGCRADEXXXXXXXXXXXXAFIGANLLFWFLALTPWRVYHLISVIILGRVIM 542
LLGEPVLWLGCRADE AFIGANLLFWFLALTPWRVYHLISVIILGRVIM
Sbjct: 139 LLGEPVLWLGCRADELLSWRRPLRSLLAFIGANLLFWFLALTPWRVYHLISVIILGRVIM 198
Query: 543 QIIKDMVLSRTRGAQLWRSLSE 608
QIIKDMVLSRTRGAQLWRSLSE
Sbjct: 199 QIIKDMVLSRTRGAQLWRSLSE 220
>ref|XP_001925601.2| PREDICTED: protein FAM134A [Sus scrofa].
Length = 543
Score = 114 bits (285), Expect = 2e-25
Identities = 84/315 (26%), Positives = 152/315 (48%), Gaps = 28/315 (8%)
Frame = +3
Query: 459 NLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEV-INSKP 635
N LFW L+ + R L+S+ +L ++ + + L + + S+S ++P
Sbjct: 88 NGLFWLLSSSSLRPIFLLSISLLAYFLLDLWQPRFLPAIQASSPEEPHSDSEGAGSGARP 147
Query: 636 D--DRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVIX 809
P L +AESW+ F I LQE+ +K+Q+P +FC VCS C +LG Y+PG++
Sbjct: 148 HLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMI 207
Query: 810 XXXXXXXXXXXXXXXXNDIGQKIYSKIKSFLLKLDFGIR---EYINQKRRERSEADKE-- 974
+++ Q++Y++++ L++LD+ ++ + ++ K +R K
Sbjct: 208 SYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAP 267
Query: 975 -------KSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGTFNLSEGY 1127
+ +SE + + P + + A L+++D+++S E S ++G F++S
Sbjct: 268 PGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRAT 327
Query: 1128 TPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----LGLPTELK 1274
TPQ TD S+DLD+ S EE SR+L G +E +L+ LG P L
Sbjct: 328 TPQLTDVSEDLDQQSLPSEPEEALSREL----------GEGEETDLAPPEDLLGPPQALS 377
Query: 1275 RKKEQLDSGPRPSKE 1319
R+ L+ S+E
Sbjct: 378 RQNLDLEEEQVASEE 392
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,725,763
Number of extensions: 856044
Number of successful extensions: 2515
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2504
Number of HSP's successfully gapped: 5
Length of query: 524
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 420
Effective length of database: 8,754,644
Effective search space: 3676950480
Effective search space used: 3676950480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007178
(1573 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 823 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 823 bits (415), Expect = 0.0
Identities = 420/422 (99%)
Strand = Plus / Minus
Query: 1152 gatcttgaccgacctagtgaggaagttttctctcgagacctttcagattttccatctcta 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172626 gatcttgaccgacctagtgaggaagttttctctcgagacctttcagattttccatctcta 6172567
Query: 1212 gaaaatggcatgggaacaaatgatgaggatgaattaagccttggcttgcccactgagctc 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172566 gaaaatggcatgggaacaaatgatgaggatgaattaagccttggcttgcccactgagctc 6172507
Query: 1272 aagagaaaaaaggaacagttggacagcggtcccagaccaagcaaagagaggcactcagcc 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172506 aagagaaaaaaggaacagttggacagcggtcccagaccaagcaaagagaggcactcagcc 6172447
Query: 1332 gctggtctcacccttcctctgagcagtgaccaaaccttccacttgatgagcaacctggcc 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172446 gctggtctcacccttcctctgagcagtgaccaaaccttccacttgatgagcaacctggcc 6172387
Query: 1392 gggaatgtcatcaccgctgcagtgacggccgccatcaaagaccagttagagggcgcgcag 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172386 gggaatgtcatcaccgctgcagtgacggccgccatcaaagaccagttagagggcgcgcag 6172327
Query: 1452 caagtgctgacgcangctgcacccagcctgggggaagacacagacactgaggaaggggat 1511
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6172326 caagtgctgacgcaggctgcacccagcctgggggaggacacagacactgaggaaggggat 6172267
Query: 1512 gactttgaactccttgaccagtcagagctcgatcagattgagagtgaactgggactttca 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172266 gactttgaactccttgaccagtcagagctcgatcagattgagagtgaactgggactttca 6172207
Query: 1572 ca 1573
||
Sbjct: 6172206 ca 6172205
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 81 accaggacccgccgccctctctgcgcgactcccaggcacgcccgcgcgcgtgcccgtgcc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324457 accaggacccgccgccctctctgcgcgactcccaggcacgcccgcgcgcgtgcccgtgcc 6324398
Query: 141 cgtccccgcccgccagcgctgctgaagatggcgagcccggcgcccaaggagccagccgcg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324397 cgtccccgcccgccagcgctgctgaagatggcgagcccggcgcccaaggagccagccgcg 6324338
Query: 201 cagggatgcccggctccagccgccgcggagcaggcgccgccgccccgggctcccgccgag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324337 cagggatgcccggctccagccgccgcggagcaggcgccgccgccccgggctcccgccgag 6324278
Query: 261 gagcaggagaaggaagcgccagaggaa 287
|||||||||||||||||||||||||||
Sbjct: 6324277 gagcaggagaaggaagcgccagaggaa 6324251
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 319 aggtggaggaggccgcaggcggggtggccgccgcggtgacctggctgctgggggagcccg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324219 aggtggaggaggccgcaggcggggtggccgccgcggtgacctggctgctgggggagcccg 6324160
Query: 379 tgctgtggctgggctgccgcgccgacgagctcctgagctggaggaggccgctgcgcagcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324159 tgctgtggctgggctgccgcgccgacgagctcctgagctggaggaggccgctgcgcagcc 6324100
Query: 439 tgcttgccttcatcggggccaacctgctgttctggt 474
||||||||||||||||||||||||||||||||||||
Sbjct: 6324099 tgcttgccttcatcggggccaacctgctgttctggt 6324064
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 823 tattgtgtgcatttttgtgtccactgcttaagtgtaatgatattggacaaaaaatataca 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175246 tattgtgtgcatttttgtgtccactgcttaagtgtaatgatattggacaaaaaatataca 6175187
Query: 883 gcaaaatcaagtcatttctcctgaaactagattttggaatcagagaatacattaaccaga 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175186 gcaaaatcaagtcatttctcctgaaactagattttggaatcagagaatacattaaccaga 6175127
Query: 943 agagacgtgagagatctg 960
||||||||||||||||||
Sbjct: 6175126 agagacgtgagagatctg 6175109
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1024 agattagcctcactgttgccgccaaggagttgtctgtgtctgacacggacgtgtccgagg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6173734 agattagcctcactgttgccgccaaggagttgtctgtgtctgacacggacgtgtccgagg 6173675
Query: 1084 tctcctggactgacaacgggaccttcaacctttcagaaggatacactccacagacagaca 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6173674 tctcctggactgacaacgggaccttcaacctttcagaaggatacactccacagacagaca 6173615
Query: 1144 cttctgatg 1152
|||||||||
Sbjct: 6173614 cttctgatg 6173606
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 609 agctgggaagttatcaattccaaaccagacgacagacccgggctcagccactgtatcgca 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6186596 agctgggaagttatcaattccaaaccagacgacagacccgggctcagccactgtatcgca 6186537
Query: 669 gaatcatggatgaatttcagcatatttcttcaagaaatgtctgtttttaaacagcaaagc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6186536 gaatcatggatgaatttcagcatatttcttcaagaaatgtctgtttttaaacagcaaagc 6186477
Query: 729 cctggcaag 737
|||||||||
Sbjct: 6186476 cctggcaag 6186468
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 472 ggttccttgccctgactccgtggagagtgtatcacctgatttccgtcataatacttgggc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6280232 ggttccttgccctgactccgtggagagtgtatcacctgatttccgtcataatacttgggc 6280173
Query: 532 gtgttattatgcaaataataaaggatatggttttgtctagaacaagaggt 581
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6280172 gtgttattatgcaaataataaaggatatggttttgtctagaacaagaggt 6280123
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 736 agttttgtctcctggtctgcagtgtgtgcacatttttcacaatcttgggaagttacattc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6184107 agttttgtctcctggtctgcagtgtgtgcacatttttcacaatcttgggaagttacattc 6184048
Query: 796 ctggggttatactcagctatctactgt 822
|||||||||||||||||||||||||||
Sbjct: 6184047 ctggggttatactcagctatctactgt 6184021
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 960 gaagcagataaagaaaaaagtcacaaagatgacagtgaattagacttttcagctctttgc 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174041 gaagcagataaagaaaaaagtcacaaagatgacagtgaattagacttttcagctctttgc 6173982
Query: 1020 cctaag 1025
||||||
Sbjct: 6173981 cctaag 6173976
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 1 cccccgggaggcgccccgcctcggccggggctgacgtcacaaggcaccca 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6324537 cccccgggaggcgccccgcctcggccggggctgacgtcacaaggcaccca 6324488
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 578 aggtgcacagctgtggagaagcctcagcgaaag 610
|||||||||||||||||||||||||||||||||
Sbjct: 6273841 aggtgcacagctgtggagaagcctcagcgaaag 6273809
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,342,972
Number of extensions: 347
Number of successful extensions: 347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 11
Length of query: 1573
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1551
Effective length of database: 2,808,408,574
Effective search space: 4355841698274
Effective search space used: 4355841698274
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)