Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691279.1| PREDICTED: transforming growth factor, alpha... 277 2e-74
Alignment gi|XP_593710.5| PREDICTED: transforming growth factor, alpha [B... 277 2e-74
Alignment gi|NP_776321.2| probetacellulin precursor [Bos taurus]. 64 2e-10
Alignment gi|NP_001192405.1| tomoregulin-1 [Bos taurus]. 52 8e-07
Alignment gi|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus]. 52 8e-07
Alignment gi|NP_001069569.1| tomoregulin-2 precursor [Bos taurus]. 49 7e-06
>ref|XP_002691279.1| PREDICTED: transforming growth factor, alpha [Bos taurus].
Length = 231
Score = 277 bits (708), Expect = 2e-74
Identities = 133/158 (84%), Positives = 136/158 (86%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MVTSAGQ ALFALGI LAVCQALENSTSALS DPP+AAAVVSHFNDCPDSHSQFCFHGTC
Sbjct: 1 MVTSAGQLALFALGIFLAVCQALENSTSALS-DPPVAAAVVSHFNDCPDSHSQFCFHGTC 59
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQE+KPACVCHSGYVGARCEHADLLAVVAASQKKQ CVL
Sbjct: 60 RFLVQEEKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 119
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSET 672
IHCC+VRKHCEWCRALICRHEKPSALLKGRTACCHSET
Sbjct: 120 IHCCEVRKHCEWCRALICRHEKPSALLKGRTACCHSET 157
>ref|XP_593710.5| PREDICTED: transforming growth factor, alpha [Bos taurus].
Length = 231
Score = 277 bits (708), Expect = 2e-74
Identities = 133/158 (84%), Positives = 136/158 (86%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MVTSAGQ ALFALGI LAVCQALENSTSALS DPP+AAAVVSHFNDCPDSHSQFCFHGTC
Sbjct: 1 MVTSAGQLALFALGIFLAVCQALENSTSALS-DPPVAAAVVSHFNDCPDSHSQFCFHGTC 59
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQE+KPACVCHSGYVGARCEHADLLAVVAASQKKQ CVL
Sbjct: 60 RFLVQEEKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 119
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSET 672
IHCC+VRKHCEWCRALICRHEKPSALLKGRTACCHSET
Sbjct: 120 IHCCEVRKHCEWCRALICRHEKPSALLKGRTACCHSET 157
>ref|NP_776321.2| probetacellulin precursor [Bos taurus].
Length = 178
Score = 64.3 bits (155), Expect = 2e-10
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADL 459
HF+ CP + +C G CRF+V E P+CVC GY GARCE DL
Sbjct: 65 HFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYAGARCERVDL 109
>ref|NP_001192405.1| tomoregulin-1 [Bos taurus].
Length = 378
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 273 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 324
>ref|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus].
Length = 378
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 273 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 324
>ref|NP_001069569.1| tomoregulin-2 precursor [Bos taurus].
Length = 374
Score = 49.3 bits (116), Expect = 7e-06
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 456
H CP+ ++ FC HG C + +P+C C +GY G CE D
Sbjct: 261 HHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHCEKKD 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,987,422
Number of extensions: 1638044
Number of successful extensions: 7369
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7351
Number of HSP's successfully gapped: 6
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855490.1| PREDICTED: similar to Transforming growth facto... 226 3e-59
Alignment gi|XP_539798.2| PREDICTED: similar to betacellulin [Canis famil... 64 3e-10
Alignment gi|XP_854753.1| PREDICTED: similar to epithelial mitogen [Canis... 54 2e-07
Alignment gi|XP_867211.1| PREDICTED: similar to transmembrane protein wit... 52 1e-06
Alignment gi|XP_532014.2| PREDICTED: similar to transmembrane protein wit... 52 1e-06
Alignment gi|NP_001003094.1| pro-epidermal growth factor precursor [Canis... 52 1e-06
Alignment gi|XP_536010.2| PREDICTED: similar to Transmembrane protein wit... 49 7e-06
>ref|XP_855490.1| PREDICTED: similar to Transforming growth factor alpha precursor
(TGF-alpha) (EGF-like TGF) (ETGF) (TGF type 1) [Canis
familiaris].
Length = 479
Score = 226 bits (577), Expect = 3e-59
Identities = 110/165 (66%), Positives = 114/165 (69%)
Frame = +1
Query: 298 PPIAAAVVSHFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAA 477
PP+AAAVVSHFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAA
Sbjct: 149 PPVAAAVVSHFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAA 208
Query: 478 SQKKQXXXXXXXXXXXXXXXXXXXCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTAC 657
SQKKQ CVLIHCCQVRKHCEWC+AL+CRHEKPSALLKGR AC
Sbjct: 209 SQKKQAITALVVVSIVALAVLIIACVLIHCCQVRKHCEWCQALLCRHEKPSALLKGRAAC 268
Query: 658 CHSETVV*GXXXXXXXXXXXXXXXXKDFLRSGQQGRPGTCPQTFP 792
CHSET + LR G G CPQ P
Sbjct: 269 CHSETDARVRATVVPVELRGRSGQLR--LRDGPGRTAGQCPQAAP 311
>ref|XP_539798.2| PREDICTED: similar to betacellulin [Canis familiaris].
Length = 190
Score = 63.9 bits (154), Expect = 3e-10
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADL 459
HF CP + +C G CRF+V E P+CVC GY GARCE DL
Sbjct: 77 HFGRCPQRYEHYCLKGRCRFVVAEQTPSCVCDEGYTGARCERVDL 121
>ref|XP_854753.1| PREDICTED: similar to epithelial mitogen [Canis familiaris].
Length = 362
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +1
Query: 271 NSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEH 450
N T S + PIA + + C + H+ +C +G C F + +K C C +GY G RCEH
Sbjct: 26 NKTEVDSTEGPIA---LKFSHPCLEDHNSYCINGVCAFHHELEKAICTCFTGYTGERCEH 82
Query: 451 ADLLAVVAASQKK 489
L + S +K
Sbjct: 83 LTLTSYAVDSYEK 95
>ref|XP_867211.1| PREDICTED: similar to transmembrane protein with EGF-like and two
follistatin-like domains 1 isoform 2 [Canis familiaris].
Length = 455
Score = 52.0 bits (123), Expect = 1e-06
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 350 CPENLNGYCIHGKCEFVYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 401
>ref|XP_532014.2| PREDICTED: similar to transmembrane protein with EGF-like and two
follistatin-like domains 1 isoform 1 [Canis familiaris].
Length = 454
Score = 52.0 bits (123), Expect = 1e-06
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 349 CPENLNGYCIHGKCEFVYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 400
>ref|NP_001003094.1| pro-epidermal growth factor precursor [Canis lupus familiaris].
Length = 1216
Score = 52.0 bits (123), Expect = 1e-06
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +1
Query: 142 LGHHR*GRRLECLLPAARKMVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVV 321
LG H G C G + G L Q +ST +V
Sbjct: 921 LGMHTCGENATC--------TNMEGNYTCMCAGSLSEPGQICADSTPPSHPMEDSHYSVR 972
Query: 322 SHFNDCPDSHSQFC-FHGTCRFLVQEDKPACVCHSGYVGARCEHADL 459
+ + +CP S+ +C ++G C ++ D+ AC C GYVG RC+H DL
Sbjct: 973 NGYRECPSSYDGYCLYNGVCMYIEAVDRYACNCVFGYVGERCQHRDL 1019
>ref|XP_536010.2| PREDICTED: similar to Transmembrane protein with EGF-like and two
follistatin-like domains 2 precursor (Tomoregulin) (TR)
[Canis familiaris].
Length = 374
Score = 49.3 bits (116), Expect = 7e-06
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 456
H CP+ ++ FC HG C + +P+C C +GY G CE D
Sbjct: 261 HHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHCEKKD 304
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,741,682
Number of extensions: 1652517
Number of successful extensions: 7573
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7543
Number of HSP's successfully gapped: 7
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003227.1| protransforming growth factor alpha isoform 1 p... 282 4e-76
Alignment gi|NP_001093161.1| protransforming growth factor alpha isoform ... 276 3e-74
Alignment gi|NP_001720.1| probetacellulin precursor [Homo sapiens]. 68 2e-11
Alignment gi|NP_003683.2| tomoregulin-1 precursor [Homo sapiens]. 52 9e-07
Alignment gi|NP_001185741.1| C9orf30-TMEFF1 fusion protein [Homo sapiens]. 52 9e-07
Alignment gi|NP_001013460.1| epigen [Homo sapiens]. 52 1e-06
Alignment gi|NP_057276.2| tomoregulin-2 precursor [Homo sapiens]. 49 7e-06
Alignment gi|NP_001171602.1| pro-epidermal growth factor isoform 3 prepro... 49 7e-06
Alignment gi|NP_001171601.1| pro-epidermal growth factor isoform 2 prepro... 49 7e-06
Alignment gi|NP_001954.2| pro-epidermal growth factor isoform 1 prepropro... 49 7e-06
>ref|NP_003227.1| protransforming growth factor alpha isoform 1 preproprotein [Homo
sapiens].
Length = 160
Score = 282 bits (722), Expect = 4e-76
Identities = 134/160 (83%), Positives = 137/160 (85%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MV SAGQ ALFALGI+LA CQALENSTS LSADPP+AAAVVSHFNDCPDSH+QFCFHGTC
Sbjct: 1 MVPSAGQLALFALGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQFCFHGTC 60
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQ CVL
Sbjct: 61 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 120
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 678
IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
Sbjct: 121 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 160
>ref|NP_001093161.1| protransforming growth factor alpha isoform 2 preproprotein [Homo
sapiens].
Length = 159
Score = 276 bits (706), Expect = 3e-74
Identities = 133/160 (83%), Positives = 136/160 (85%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MV SAGQ ALFALGI+LA CQALENSTS LS DPP+AAAVVSHFNDCPDSH+QFCFHGTC
Sbjct: 1 MVPSAGQLALFALGIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQFCFHGTC 59
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQ CVL
Sbjct: 60 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 119
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 678
IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
Sbjct: 120 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 159
>ref|NP_001720.1| probetacellulin precursor [Homo sapiens].
Length = 178
Score = 67.8 bits (164), Expect = 2e-11
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Frame = +1
Query: 232 ALGILLAVCQALE-NSTSA------LSADPPIAAAVVS-------HFNDCPDSHSQFCFH 369
ALG+++ C + NST + L DP A + HF+ CP + +C
Sbjct: 20 ALGLVILHCVVADGNSTRSPETNGLLCGDPEENCAATTTQSKRKGHFSRCPKQYKHYCIK 79
Query: 370 GTCRFLVQEDKPACVCHSGYVGARCEHADL 459
G CRF+V E P+CVC GY+GARCE DL
Sbjct: 80 GRCRFVVAEQTPSCVCDEGYIGARCERVDL 109
>ref|NP_003683.2| tomoregulin-1 precursor [Homo sapiens].
Length = 380
Score = 52.4 bits (124), Expect = 9e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 275 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 326
>ref|NP_001185741.1| C9orf30-TMEFF1 fusion protein [Homo sapiens].
Length = 454
Score = 52.4 bits (124), Expect = 9e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 349 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 400
>ref|NP_001013460.1| epigen [Homo sapiens].
Length = 133
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Frame = +1
Query: 232 ALGILLAVCQALENSTS-----ALSADPPIAAAVVSHFND---------CPDSHSQFCFH 369
ALG+ ++V T+ A++ PPI A + C + H+ +C +
Sbjct: 2 ALGVPISVYLLFNAMTALTEEAAVTVTPPITAQQADNIEGPIALKFSHLCLEDHNSYCIN 61
Query: 370 GTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKK 489
G C F + +K C C +GY G RCEH L + S +K
Sbjct: 62 GACAFHHELEKAICRCFTGYTGERCEHLTLTSYAVDSYEK 101
>ref|NP_057276.2| tomoregulin-2 precursor [Homo sapiens].
Length = 374
Score = 49.3 bits (116), Expect = 7e-06
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 456
H CP+ ++ FC HG C + +P+C C +GY G CE D
Sbjct: 261 HHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHCEKKD 304
>ref|NP_001171602.1| pro-epidermal growth factor isoform 3 preproprotein [Homo sapiens].
Length = 1165
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 331 NDCPDSHSQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHADL 459
++CP SH +C H G C ++ DK AC C GY+G RC++ DL
Sbjct: 932 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 975
>ref|NP_001171601.1| pro-epidermal growth factor isoform 2 preproprotein [Homo sapiens].
Length = 1166
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 331 NDCPDSHSQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHADL 459
++CP SH +C H G C ++ DK AC C GY+G RC++ DL
Sbjct: 933 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 976
>ref|NP_001954.2| pro-epidermal growth factor isoform 1 preproprotein [Homo sapiens].
Length = 1207
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 331 NDCPDSHSQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHADL 459
++CP SH +C H G C ++ DK AC C GY+G RC++ DL
Sbjct: 974 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 1017
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,869,667
Number of extensions: 1622597
Number of successful extensions: 7298
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7266
Number of HSP's successfully gapped: 10
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112476.1| protransforming growth factor alpha preproprote... 262 4e-70
Alignment gi|NP_031594.1| betacellulin preproprotein [Mus musculus]. 69 6e-12
Alignment gi|NP_444317.1| epigen precursor [Mus musculus]. 54 3e-07
Alignment gi|NP_067411.1| tomoregulin-1 precursor [Mus musculus]. 52 7e-07
Alignment gi|NP_062764.1| tomoregulin-2 precursor [Mus musculus]. 49 6e-06
>ref|NP_112476.1| protransforming growth factor alpha preproprotein [Mus musculus].
Length = 159
Score = 262 bits (670), Expect = 4e-70
Identities = 125/160 (78%), Positives = 132/160 (82%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MV + GQ AL ALGILLAVCQALENSTS LS D P+AAAVVSHFN CPDSH+Q+CFHGTC
Sbjct: 1 MVPATGQLALLALGILLAVCQALENSTSPLS-DSPVAAAVVSHFNKCPDSHTQYCFHGTC 59
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQE+KPACVCHSGYVG RCEHADLLAVVAASQKKQ CVL
Sbjct: 60 RFLVQEEKPACVCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 119
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 678
IHCCQ+RKHCEWCRAL+CRHEKPSALLKGRTACCHSETVV
Sbjct: 120 IHCCQLRKHCEWCRALVCRHEKPSALLKGRTACCHSETVV 159
>ref|NP_031594.1| betacellulin preproprotein [Mus musculus].
Length = 177
Score = 69.3 bits (168), Expect = 6e-12
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Frame = +1
Query: 202 VTSAGQFALFALGILLAVCQALE-NSTSALSADPPIAAA-------------VVSHFNDC 339
V+S + ALG+ + C + N+T + + A V +HF+ C
Sbjct: 10 VSSLPLLLVLALGLAILHCVVADGNTTRTPETNGSLCGAPGENCTGTTPRQKVKTHFSRC 69
Query: 340 PDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADL 459
P + +C HG CRF+V E P+C+C GY GARCE DL
Sbjct: 70 PKQYKHYCIHGRCRFVVDEQTPSCICEKGYFGARCERVDL 109
>ref|NP_444317.1| epigen precursor [Mus musculus].
Length = 152
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Frame = +1
Query: 232 ALGILLAVCQALENSTSALSAD----PPIAA------------------AVVSHFNDCPD 345
ALG+L+AVC + +ALS + PP A + + C +
Sbjct: 2 ALGVLIAVCLLFKAMKAALSEEAEVIPPSTAQQSNWTFNNTEADYIEEPVALKFSHPCLE 61
Query: 346 SHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKK 489
H+ +C +G C F + + C C +GY G RCEH L + S +K
Sbjct: 62 DHNSYCINGACAFHHELKQAICRCFTGYTGQRCEHLTLTSYAVDSYEK 109
>ref|NP_067411.1| tomoregulin-1 precursor [Mus musculus].
Length = 372
Score = 52.4 bits (124), Expect = 7e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 267 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 318
>ref|NP_062764.1| tomoregulin-2 precursor [Mus musculus].
Length = 374
Score = 49.3 bits (116), Expect = 6e-06
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 456
H CP+ ++ FC HG C + +P+C C +GY G CE D
Sbjct: 261 HHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHCEKKD 304
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,804,465
Number of extensions: 1355515
Number of successful extensions: 5789
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5770
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999416.1| protransforming growth factor alpha precursor [... 291 7e-79
Alignment gi|XP_003357025.1| PREDICTED: probetacellulin [Sus scrofa]. 64 1e-10
Alignment gi|NP_999185.1| pro-epidermal growth factor precursor [Sus scro... 54 2e-07
Alignment gi|XP_003122088.1| PREDICTED: UPF0439 protein C9orf30 homolog i... 52 5e-07
Alignment gi|XP_003122087.1| PREDICTED: UPF0439 protein C9orf30 homolog i... 52 5e-07
Alignment gi|NP_999464.1| proheparin-binding EGF-like growth factor precu... 49 7e-06
>ref|NP_999416.1| protransforming growth factor alpha precursor [Sus scrofa].
Length = 160
Score = 291 bits (744), Expect = 7e-79
Identities = 140/160 (87%), Positives = 140/160 (87%)
Frame = +1
Query: 199 MVTSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 378
MV SAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC
Sbjct: 1 MVPSAGQFALFALGILLAVCQALENSTSALSADPPIAAAVVSHFNDCPDSHSQFCFHGTC 60
Query: 379 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQXXXXXXXXXXXXXXXXXXXCVL 558
RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQ CVL
Sbjct: 61 RFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVL 120
Query: 559 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 678
IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
Sbjct: 121 IHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV 160
>ref|XP_003357025.1| PREDICTED: probetacellulin [Sus scrofa].
Length = 184
Score = 64.3 bits (155), Expect = 1e-10
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +1
Query: 325 HFNDCPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADL 459
HF+ CP + +C G CRF+V E P+CVC GY GARCE DL
Sbjct: 71 HFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYAGARCERVDL 115
>ref|NP_999185.1| pro-epidermal growth factor precursor [Sus scrofa].
Length = 1214
Score = 53.5 bits (127), Expect = 2e-07
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 313 AVVSHFNDCPDSHSQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHADL 459
+V + +++CP SH +C HG C ++ D AC C GYVG RC+H DL
Sbjct: 967 SVRNSYSECPPSHDGYCLHGGVCMYIEAVDSYACNCVFGYVGERCQHRDL 1016
>ref|XP_003122088.1| PREDICTED: UPF0439 protein C9orf30 homolog isoform 2 [Sus scrofa].
Length = 454
Score = 52.4 bits (124), Expect = 5e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 349 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 400
>ref|XP_003122087.1| PREDICTED: UPF0439 protein C9orf30 homolog isoform 1 [Sus scrofa].
Length = 378
Score = 52.4 bits (124), Expect = 5e-07
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHAD--LLAVVAASQK 486
CP++ + +C HG C F+ K +C C SGY G CE D +L VV + QK
Sbjct: 273 CPENLNGYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQK 324
>ref|NP_999464.1| proheparin-binding EGF-like growth factor precursor [Sus scrofa].
Length = 208
Score = 48.5 bits (114), Expect = 7e-06
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Frame = +1
Query: 337 CPDSHSQFCFHGTCRFLVQEDKPACVCHSGYVGARC--------------EHADLLAVVA 474
C + FC HG C+++ + P+C+CH GY G RC +H +LAVVA
Sbjct: 108 CLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHGLSLPVKNRLYTYDHTTILAVVA 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,653,496
Number of extensions: 1068891
Number of successful extensions: 4940
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4917
Number of HSP's successfully gapped: 6
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007187
(1223 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 289 2e-75
>Sscrofa_Chr03
|| Length = 144787322
Score = 289 bits (146), Expect = 2e-75
Identities = 149/150 (99%)
Strand = Plus / Minus
Query: 414 ctgccactctgggtacgtcggcgcgcgctgtgaacacgcagacctcctggcggtggtggc 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 75429986 ctgccactctgggtacgtcggcgcacgctgtgaacacgcagacctcctggcggtggtggc 75429927
Query: 474 cgccagccagaagaagcaggccattaccgccttggtggtggtctccatagtggccctggc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75429926 cgccagccagaagaagcaggccattaccgccttggtggtggtctccatagtggccctggc 75429867
Query: 534 tgtcctcatcatcacatgtgtgctgataca 563
||||||||||||||||||||||||||||||
Sbjct: 75429866 tgtcctcatcatcacatgtgtgctgataca 75429837
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 292 gcagacccgcccatagctgcagctgtggtgtcccattttaatgactgcccagattcccac 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75437891 gcagacccgcccatagctgcagctgtggtgtcccattttaatgactgcccagattcccac 75437832
Query: 352 agtcagttctgcttccatggaacctgcaggtttttggtgcaggaggacaagccagcatgt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75437831 agtcagttctgcttccatggaacctgcaggtttttggtgcaggaggacaagccagcatgt 75437772
Query: 412 gt 413
||
Sbjct: 75437771 gt 75437770
Score = 157 bits (79), Expect = 2e-35
Identities = 91/95 (95%)
Strand = Plus / Minus
Query: 575 tccgaaaacactgtgagtggtgccgggccctcatctgccggcacgagaagcccagtgccc 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75427217 tccgaaaacactgtgagtggtgccgggccctcatctgccggcacgagaagcccagtgcct 75427158
Query: 635 tcctgaagggaaggaccgcttgctgccactcagaa 669
|| ||||||||||||||||||||||||||||||
Sbjct: 75427157 tctgaaagggaaggaccgcttgctgccactcagaa 75427123
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 238 ggtatcttgttggccgtgtgccaggccctggagaacagcacgtccgccctgagtg 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75420656 ggtatcttgttggccgtgtgccaggccctggagaacagcacgtccgccctgagtg 75420602
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,396,754
Number of extensions: 255
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 4
Length of query: 1223
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1202
Effective length of database: 2,808,413,156
Effective search space: 3375712613512
Effective search space used: 3375712613512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)