Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taur... 352 e-102
>ref|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taurus].
Length = 591
Score = 352 bits (903), Expect(2) = e-102
Identities = 182/216 (84%), Positives = 187/216 (86%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
STESRGTDTESSGEDKDSDSMEDTGHYS+NDE+QVHD S
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSVNDESQVHDRS-----EEEEEEEHPRRRVQRK 115
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 116 RANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 175
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 176 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 211
Score = 40.0 bits (92), Expect(2) = e-102
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 212 VVWDWVRRQPVLDFESGHKS 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,594,180
Number of extensions: 1149140
Number of successful extensions: 4540
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4505
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 297
Effective length of database: 14,240,222
Effective search space: 4229345934
Effective search space used: 4229345934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris]. 355 e-103
Alignment gi|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris]. 141 4e-37
>ref|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris].
Length = 596
Score = 355 bits (911), Expect(2) = e-103
Identities = 183/216 (84%), Positives = 185/216 (85%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSS DGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSADGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
ST SRGTDTESSGEDKDSDSMEDTGHYSINDENQVHD S
Sbjct: 61 STGSRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEEEEEEEEEEEHPRRRVQRK 120
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 216
Score = 40.0 bits (92), Expect(2) = e-103
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 217 VVWDWVRRQPVLDFESGHKS 236
>ref|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris].
Length = 520
Score = 141 bits (355), Expect(2) = 4e-37
Identities = 69/95 (72%), Positives = 77/95 (81%)
Frame = +3
Query: 843 ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 1022
AN DQ SD++RALE+WV SETS LPRPRWQ + ALRER+LGSSARFVYEACGAR+FVQR
Sbjct: 46 ANYDQYLSDEDRALEEWVTSETSTLPRPRWQIVSALRERQLGSSARFVYEACGARLFVQR 105
Query: 1023 FRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
F L H LEGH G + NQRGTWLAS +DDLKV
Sbjct: 106 FHLLHELEGHHGCVNTVHFNQRGTWLASSSDDLKV 140
Score = 33.1 bits (74), Expect(2) = 4e-37
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNK 1183
+VWDW R+ PVL F SG+K
Sbjct: 141 IVWDWVRKHPVLEFMSGHK 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,723,055
Number of extensions: 1082718
Number of successful extensions: 4667
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4637
Number of HSP's successfully gapped: 4
Length of query: 401
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 296
Effective length of database: 15,374,224
Effective search space: 4550770304
Effective search space used: 4550770304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapien... 352 e-102
Alignment gi|NP_001130005.1| DDB1- and CUL4-associated factor 8-like prot... 181 6e-50
Alignment gi|NP_001017930.1| DDB1- and CUL4-associated factor 8-like prot... 169 1e-46
>ref|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapiens].
Length = 597
Score = 352 bits (904), Expect(2) = e-102
Identities = 183/217 (84%), Positives = 187/217 (86%), Gaps = 1/217 (0%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS-XXXXXXXXXXXXXXXXXXXX 836
STESRGTDTESSGEDKDSDSMEDTGHYSINDEN+VHD S
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQR 120
Query: 837 XXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 1016
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFV
Sbjct: 121 KRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 180
Query: 1017 QRFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
QRFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 217
Score = 40.0 bits (92), Expect(2) = e-102
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 218 VVWDWVRRQPVLDFESGHKS 237
>ref|NP_001130005.1| DDB1- and CUL4-associated factor 8-like protein 2 [Homo sapiens].
Length = 631
Score = 181 bits (458), Expect(2) = 6e-50
Identities = 109/252 (43%), Positives = 138/252 (54%), Gaps = 36/252 (14%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD-----DG 644
MS + STDG DL SL SSPEE SGA E SS I++ S+LS+++TGD DG
Sbjct: 1 MSHQEGSTDGLPDLGTESLFSSPEEQSGAVAATEASSDIDIATSELSVTVTGDGSDSRDG 60
Query: 645 G-PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDP---------------- 773
G PN STE+R +D ES+ ED + +S+ED H+ ++ E+ H P
Sbjct: 61 GFPNDASTENRSSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEI 120
Query: 774 --------------SXXXXXXXXXXXXXXXXXXXXXXANRDQDSSDDERALEDWVASETS 911
N +Q S ++++ALE+WV+SETS
Sbjct: 121 QEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGGNHEQYSLEEDQALEEWVSSETS 180
Query: 912 ALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGLC*YLALNQRG 1091
ALPRPRWQ + AL +R+LGS RFVYEACGAR FVQRFRLQ+ L H G + NQRG
Sbjct: 181 ALPRPRWQVVTALHQRQLGSRPRFVYEACGARAFVQRFRLQYRLADHVGCVNTVHFNQRG 240
Query: 1092 TWLASGNDDLKV 1127
T LAS DDLKV
Sbjct: 241 TRLASSGDDLKV 252
Score = 36.2 bits (82), Expect(2) = 6e-50
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGN 1180
+VWDW R++PVLNFESG+
Sbjct: 253 IVWDWVRQRPVLNFESGH 270
>ref|NP_001017930.1| DDB1- and CUL4-associated factor 8-like protein 1 [Homo sapiens].
Length = 600
Score = 169 bits (429), Expect(2) = 1e-46
Identities = 105/220 (47%), Positives = 127/220 (57%), Gaps = 4/220 (1%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD--DGG-P 650
MS + ST G DL SL SSPEE SG SS IE+ A++ S GD DGG
Sbjct: 1 MSHQEGSTGGLPDLVTESLFSSPEEQSGVAAVTAASSDIEMAATEPSTGDGGDTRDGGFL 60
Query: 651 NRTSTESRGTDTESSGEDKDSDSM-EDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXX 827
N STE++ TD+ESS ED + +SM E Y + E +
Sbjct: 61 NDASTENQNTDSESSSEDVELESMGEGLFGYPLVGEETEREEEEEEMEEEGEEEEQPRMC 120
Query: 828 XXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGAR 1007
N DQ D+++ALE+W++SETSALPR RWQ L ALR+R+LGSSARFVYEACGAR
Sbjct: 121 PRCGGTNHDQCLLDEDQALEEWISSETSALPRSRWQVLTALRQRQLGSSARFVYEACGAR 180
Query: 1008 VFVQRFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
FVQRFRLQ+ L H G + NQRGT LAS DDL+V
Sbjct: 181 TFVQRFRLQYLLGSHAGSVSTIHFNQRGTRLASSGDDLRV 220
Score = 36.2 bits (82), Expect(2) = 1e-46
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGN 1180
+VWDW R++PVLNFESG+
Sbjct: 221 IVWDWVRQKPVLNFESGH 238
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,991,942
Number of extensions: 1062771
Number of successful extensions: 4721
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4692
Number of HSP's successfully gapped: 7
Length of query: 401
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 296
Effective length of database: 14,835,944
Effective search space: 4391439424
Effective search space used: 4391439424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculu... 330 9e-96
Alignment gi|NP_032847.2| plasmacytoma expressed transcript 2 [Mus muscul... 120 8e-31
>ref|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculus].
Length = 591
Score = 330 bits (845), Expect(2) = 9e-96
Identities = 170/215 (79%), Positives = 182/215 (84%)
Frame = +3
Query: 483 SSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 662
+ + ++TDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS
Sbjct: 3 NKRPNTTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 62
Query: 663 TESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXXX 842
TESRGTDTESSGE+KDSDSMEDTGHYSINDE++ H S
Sbjct: 63 TESRGTDTESSGEEKDSDSMEDTGHYSINDESRGHGHSDEEDEEQPRHRGQRKR------ 116
Query: 843 ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 1022
A+RDQDSSDDERALEDWV+SET+ALPRPRWQALPALRERELGSSARFVYEACGARVFVQR
Sbjct: 117 ASRDQDSSDDERALEDWVSSETTALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 176
Query: 1023 FRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
FRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 177 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 211
Score = 40.0 bits (92), Expect(2) = 9e-96
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 212 VVWDWVRRQPVLDFESGHKS 231
>ref|NP_032847.2| plasmacytoma expressed transcript 2 [Mus musculus].
Length = 747
Score = 120 bits (300), Expect(2) = 8e-31
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +3
Query: 852 DQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRL 1031
+Q +D+ +++W+A ETS LPRPRW L ALR+R+LGSS RFVYEACGAR+FVQRF L
Sbjct: 286 EQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRDRQLGSSGRFVYEACGARLFVQRFSL 345
Query: 1032 QHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
+H EGH+G + NQ GT LASG+DDLKV
Sbjct: 346 EHVFEGHSGCVNTVHFNQHGTLLASGSDDLKV 377
Score = 32.7 bits (73), Expect(2) = 8e-31
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNK 1183
+VWDW +++ VLNF+SG+K
Sbjct: 378 IVWDWLKKRSVLNFDSGHK 396
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,914,610
Number of extensions: 893998
Number of successful extensions: 4141
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4101
Number of HSP's successfully gapped: 4
Length of query: 401
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 297
Effective length of database: 12,493,815
Effective search space: 3710663055
Effective search space used: 3710663055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor ... 364 e-106
Alignment gi|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor ... 364 e-106
Alignment gi|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor ... 364 e-106
Alignment gi|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor ... 364 e-106
Alignment gi|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor ... 193 3e-53
>ref|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Sus scrofa].
Length = 596
Score = 364 bits (935), Expect(2) = e-106
Identities = 187/216 (86%), Positives = 188/216 (87%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 216
Score = 40.0 bits (92), Expect(2) = e-106
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 217 VVWDWVRRQPVLDFESGHKS 236
>ref|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 3 [Sus scrofa].
Length = 596
Score = 364 bits (935), Expect(2) = e-106
Identities = 187/216 (86%), Positives = 188/216 (87%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 216
Score = 40.0 bits (92), Expect(2) = e-106
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 217 VVWDWVRRQPVLDFESGHKS 236
>ref|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 2 [Sus scrofa].
Length = 596
Score = 364 bits (935), Expect(2) = e-106
Identities = 187/216 (86%), Positives = 188/216 (87%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 216
Score = 40.0 bits (92), Expect(2) = e-106
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 217 VVWDWVRRQPVLDFESGHKS 236
>ref|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 1 [Sus scrofa].
Length = 596
Score = 364 bits (935), Expect(2) = e-106
Identities = 187/216 (86%), Positives = 188/216 (87%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 659
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 660 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 839
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 840 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 1019
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 1020 RFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
RFRLQHGLEGHTG L NQRGTWLASG+DDLKV
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKV 216
Score = 40.0 bits (92), Expect(2) = e-106
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNKA 1186
VVWDW RRQPVL+FESG+K+
Sbjct: 217 VVWDWVRRQPVLDFESGHKS 236
>ref|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Sus scrofa].
Length = 604
Score = 193 bits (491), Expect(2) = 3e-53
Identities = 112/227 (49%), Positives = 135/227 (59%), Gaps = 11/227 (4%)
Frame = +3
Query: 480 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGG---- 647
M+ SSTDG DL N LS PEE SG E GRE E+ LS++ G D G
Sbjct: 1 MADDESSTDGPPDLENRGLSDHPEESSGVEAGREACPDTEII---LSVTRGGGDFGSGGI 57
Query: 648 PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVH-------DPSXXXXXXXXXX 806
P STE++GT +E S ED D + +ED ++ INDENQ H
Sbjct: 58 PEHASTENQGTSSERSSEDIDIECVEDADNFFINDENQFHYREEEELREEEEFGEEEQEE 117
Query: 807 XXXXXXXXXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFV 986
AN + S +++ALE+WV+SETSALP PRW+ L ALRER+LGSSARFV
Sbjct: 118 LAEEQPQVQCGEANHGECLSAEDQALEEWVSSETSALPLPRWRVLNALRERQLGSSARFV 177
Query: 987 YEACGARVFVQRFRLQHGLEGHTGLC*YLALNQRGTWLASGNDDLKV 1127
YEACGARVFVQ F+LQ+GLEGH G L NQRGTWLA+ +DDLKV
Sbjct: 178 YEACGARVFVQHFQLQYGLEGHNGCVNTLHFNQRGTWLATSSDDLKV 224
Score = 33.9 bits (76), Expect(2) = 3e-53
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 1127 VVWDWGRRQPVLNFESGNK 1183
++WDW R+QPVL FESG++
Sbjct: 225 ILWDWVRQQPVLVFESGHR 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,428,023
Number of extensions: 879698
Number of successful extensions: 3012
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2984
Number of HSP's successfully gapped: 10
Length of query: 401
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,829,335
Effective search space: 2648800500
Effective search space used: 2648800500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007191
(1204 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 660 0.0
Sscrofa_ChrX 172 3e-40
>Sscrofa_Chr04
|| Length = 143465943
Score = 660 bits (333), Expect = 0.0
Identities = 379/389 (97%), Gaps = 4/389 (1%)
Strand = Plus / Plus
Query: 813 catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125404 catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 98125463
Query: 873 gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125464 gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 98125523
Query: 933 caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125524 caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 98125583
Query: 993 gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125584 gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 98125643
Query: 1053 actggtttgtgttaataccttgcac-ttaaccagcgcggcacctggctggccagtggcaa 1111
||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 98125644 actgg-ttgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcag 98125702
Query: 1112 cgatgacctgaaagt-gtggtttgggactgggggcggcgacagccagtattgaactttga 1170
||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 98125703 cgatgacctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttga 98125762
Query: 1171 aagtggcaac-aaagcaatgtcttccagg 1198
|||||| || ||||||||||||||||||
Sbjct: 98125763 gagtggccacaaaagcaatgtcttccagg 98125791
Score = 494 bits (249), Expect = e-137
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 528 ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125119 ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 98125178
Query: 588 tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125179 tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 98125238
Query: 648 cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125239 cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 98125298
Query: 708 gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125299 gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 98125358
Query: 768 gacccctca 776
|||||||||
Sbjct: 98125359 gacccctca 98125367
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 329 agtttaaaacaatactggtgtttcaaaagcaaacggactagtagaagacattctatagtc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98108441 agtttaaaacaatactggtgtttcaaaagcaaacggactagtagaagacattctatagtc 98108500
Query: 389 gtgtgccttcttgtgggagactgagatcttcagtgttttgcgctctaggtcctgttttct 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98108501 gtgtgccttcttgtgggagactgagatcttcagtgttttgcgctctaggtcctgttttct 98108560
Query: 449 gtcagg 454
||||||
Sbjct: 98108561 gtcagg 98108566
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 128 tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104511 tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 98104570
Query: 188 tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 234
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104571 tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 98104617
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 451 caggctggctacagtaaacatcattcaagatgtccagcaaagggagcagcacagatggca 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98120652 caggctggctacagtaaacatcattcaagatgtccagcaaagggagcagcacagatggca 98120711
Query: 511 aaacagacttagctaatgg 529
|||||||||||||||||||
Sbjct: 98120712 aaacagacttagctaatgg 98120730
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 257 gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98105500 gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 98105559
Query: 317 ataaaggaggaaag 330
||||||||||||||
Sbjct: 98105560 ataaaggaggaaag 98105573
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 8 aacggggccggaaagcgtggcagcgcaggcgcaagcgcagaga 50
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104391 aacggggccggaaagcgtggcagcgcaggcgcaagcgcagaga 98104433
>Sscrofa_ChrX
|| Length = 144288218
Score = 172 bits (87), Expect = 3e-40
Identities = 194/227 (85%), Gaps = 2/227 (0%)
Strand = Plus / Plus
Query: 879 gccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctggcaagcc 938
||||||||||| ||||| | ||||||||||| ||||| |||| |||||||||| | |
Sbjct: 25346105 gccctggaggaatgggtgtcttcagagacatctgccctaccccttcctcgctggcgggtc 25346164
Query: 939 cttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgaggcttgt 998
||| |||||| || || ||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 25346165 cttaatgctctgcgagaacggcagctgggttcaagtgcccgctttgtgtatgaggcctgc 25346224
Query: 999 ggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccatactggt 1058
|||||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||
Sbjct: 25346225 ggggcaagagtctttgtgcagcatttccagttgcagtatgggcttgagggccacaatgg- 25346283
Query: 1059 ttgtgttaataccttgcac-ttaaccagcgcggcacctggctggcca 1104
|||||| ||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 25346284 ttgtgtcaatactctgcactttaaccagcgtggcacctggctggcca 25346330
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,496,102
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 8
Length of query: 1204
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1183
Effective length of database: 2,808,413,156
Effective search space: 3322352763548
Effective search space used: 3322352763548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)