Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029695.1| AP-2 complex subunit mu [Bos taurus]. 286 e-154
Alignment gi|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus]. 139 2e-63
Alignment gi|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus]. 142 7e-62
Alignment gi|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus]. 84 1e-32
Alignment gi|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus]. 85 6e-32
Alignment gi|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus]. 83 4e-16
Alignment gi|XP_002698754.1| PREDICTED: adaptor-related protein complex 3... 83 4e-16
Alignment gi|NP_001178147.2| stonin-2 [Bos taurus]. 58 2e-08
Alignment gi|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus]. 58 2e-08
>ref|NP_001029695.1| AP-2 complex subunit mu [Bos taurus].
Length = 435
Score = 286 bits (731), Expect(2) = e-154
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 277 bits (708), Expect(2) = e-154
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus].
Length = 423
Score = 139 bits (349), Expect(2) = 2e-63
Identities = 63/136 (46%), Positives = 96/136 (70%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
+S++ VT + WR EGIKY++NE+F+DV+ESVNLL++ G VL + + G + +K +LS
Sbjct: 146 KSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLS 205
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP ++ G+ND+++ E G +S S+ ++D FHQCVRL++FD++R+ISFIP
Sbjct: 206 GMPELRLGLNDRVLFELTG--------RSKNKSVELEDVKFHQCVRLSRFDNDRTISFIP 257
Query: 949 PDGXFELMRYRTNQDI 996
PDG FELM YR + +
Sbjct: 258 PDGDFELMSYRLSTQV 273
Score = 123 bits (308), Expect(2) = 2e-63
Identities = 58/146 (39%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ + +D F ++ ++ +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEGALTPLLSHGRVHFLWIKYSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK+ +V + YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQHHERRAVP 596
+++ L+ +ITQQG K + + R P
Sbjct: 126 TDSKILQEYITQQGNKLETGKSRVPP 151
>ref|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus].
Length = 423
Score = 142 bits (357), Expect(2) = 7e-62
Identities = 65/129 (50%), Positives = 93/129 (72%)
Frame = +1
Query: 610 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQF 789
VT + WR EGIKYR+NE+FLDV+ESVNLL+S G VL + + G + M+ +LSGMP ++
Sbjct: 153 VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRL 212
Query: 790 GMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFEL 969
G+NDK++ + G+G + S+ ++D FHQCVRL++F+++R+ISFIPPDG FEL
Sbjct: 213 GLNDKVLFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL 264
Query: 970 MRYRTNQDI 996
M YR N +
Sbjct: 265 MSYRLNTHV 273
Score = 114 bits (286), Expect(2) = 7e-62
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIK 566
+++ L+ +ITQ+G K
Sbjct: 126 TDSKILQEYITQEGHK 141
>ref|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus].
Length = 418
Score = 84.3 bits (207), Expect(2) = 1e-32
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 1e-32
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus].
Length = 452
Score = 85.1 bits (209), Expect(2) = 6e-32
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHDDRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L A T +N++ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ 572
Y Q + T L+ FI + + S+
Sbjct: 121 YVQTTSTEVLRNFIQTEAVVSK 142
Score = 71.6 bits (174), Expect(2) = 6e-32
Identities = 36/119 (30%), Positives = 66/119 (55%)
Frame = +1
Query: 652 RRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIEKQGQG 831
++NE+FLDV+E +++L++ G +L V G + +KS+L M+ G+ ++ + K
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKS--- 239
Query: 832 TAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFELMRYRTNQDIILPL 1008
+ I +D+ +FH V L++F+S R + PP G +MRY+ + D+ PL
Sbjct: 240 ----ELRGYGPGIRVDEVSFHSSVYLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPL 294
>ref|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus].
Length = 418
Score = 83.2 bits (204), Expect = 4e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLSYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 1e-13
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|XP_002698754.1| PREDICTED: adaptor-related protein complex 3, mu 2 subunit [Bos
taurus].
Length = 418
Score = 83.2 bits (204), Expect = 4e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLSYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 1e-13
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|NP_001178147.2| stonin-2 [Bos taurus].
Length = 897
Score = 57.8 bits (138), Expect = 2e-08
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 640 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIE 816
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ + G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 817 KQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDG-XFELMRYRT 984
+ D + I + +C FH CV + F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRT 678
>ref|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus].
Length = 965
Score = 57.8 bits (138), Expect = 2e-08
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 640 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIE 816
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ + G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 817 KQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDG-XFELMRYRT 984
+ D + I + +C FH CV + F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRT 678
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,351,416
Number of extensions: 1203805
Number of successful extensions: 5722
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5696
Number of HSP's successfully gapped: 16
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858515.1| PREDICTED: similar to adaptor-related protein c... 286 e-154
Alignment gi|XP_849091.1| PREDICTED: similar to adaptor-related protein c... 286 e-154
Alignment gi|XP_858550.1| PREDICTED: similar to adaptor-related protein c... 282 e-152
Alignment gi|XP_858405.1| PREDICTED: similar to adaptor-related protein c... 281 e-152
Alignment gi|XP_858327.1| PREDICTED: similar to adaptor-related protein c... 282 e-150
Alignment gi|XP_858479.1| PREDICTED: similar to adaptor-related protein c... 282 e-150
Alignment gi|XP_857916.1| PREDICTED: similar to adaptor-related protein c... 285 e-149
Alignment gi|XP_858757.1| PREDICTED: similar to adaptor-related protein c... 286 e-148
Alignment gi|XP_858719.1| PREDICTED: similar to adaptor-related protein c... 286 e-147
Alignment gi|XP_858250.1| PREDICTED: similar to adaptor-related protein c... 282 e-145
>ref|XP_858515.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 19 [Canis familiaris].
Length = 435
Score = 286 bits (731), Expect(2) = e-154
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 277 bits (708), Expect(2) = e-154
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|XP_849091.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 1 [Canis familiaris].
Length = 435
Score = 286 bits (731), Expect(2) = e-154
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 277 bits (708), Expect(2) = e-154
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|XP_858550.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform b isoform 20 [Canis familiaris].
Length = 440
Score = 282 bits (722), Expect(2) = e-152
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ 572
PQNSETGALKTFITQQGIKSQ
Sbjct: 121 PQNSETGALKTFITQQGIKSQ 141
Score = 277 bits (708), Expect(2) = e-152
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 149 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 208
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 209 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 268
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 269 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 302
>ref|XP_858405.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 16 [Canis familiaris].
Length = 437
Score = 281 bits (718), Expect(2) = e-152
Identities = 142/147 (96%), Positives = 143/147 (97%), Gaps = 2/147 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIG--RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 323
MIGGLFIYNHKGEVLISRVYRDDIG RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGNRRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 60
Query: 324 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 503
KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
Sbjct: 61 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 120
Query: 504 GYPQNSETGALKTFITQQGIKSQHHER 584
GYPQNSETGALKTFITQQGIKSQH +
Sbjct: 121 GYPQNSETGALKTFITQQGIKSQHQTK 147
Score = 277 bits (708), Expect(2) = e-152
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 146 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 205
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 206 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 265
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 266 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 299
>ref|XP_858327.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 14 [Canis familiaris].
Length = 445
Score = 282 bits (722), Expect(2) = e-150
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ 572
PQNSETGALKTFITQQGIKSQ
Sbjct: 121 PQNSETGALKTFITQQGIKSQ 141
Score = 270 bits (690), Expect(2) = e-150
Identities = 140/161 (86%), Positives = 145/161 (90%), Gaps = 7/161 (4%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 147 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 206
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSK-------SGEASIAIDDCTFHQCVRLNK 915
SYLSGMP +FGMNDKIVIEKQG+GTAD SK SG+ SIAIDDCTFHQCVRL+K
Sbjct: 207 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKRPSAPAHSGKQSIAIDDCTFHQCVRLSK 266
Query: 916 FDSERSISFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
FDSERSISFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 267 FDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 307
>ref|XP_858479.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform b isoform 18 [Canis familiaris].
Length = 431
Score = 282 bits (722), Expect(2) = e-150
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ 572
PQNSETGALKTFITQQGIKSQ
Sbjct: 121 PQNSETGALKTFITQQGIKSQ 141
Score = 269 bits (688), Expect(2) = e-150
Identities = 136/150 (90%), Positives = 141/150 (94%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS
Sbjct: 144 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 203
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSISFIP
Sbjct: 204 GMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIP 263
Query: 949 PDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
PDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 PDGEFELMRYRTTKDIILPFRVIPLVREVG 293
>ref|XP_857916.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 4 [Canis familiaris].
Length = 362
Score = 285 bits (730), Expect(2) = e-149
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQH 575
PQNSETGALKTFITQQGIKSQH
Sbjct: 121 PQNSETGALKTFITQQGIKSQH 142
Score = 262 bits (670), Expect(2) = e-149
Identities = 136/157 (86%), Positives = 141/157 (89%), Gaps = 7/157 (4%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS
Sbjct: 149 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 208
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSK-------SGEASIAIDDCTFHQCVRLNKFDSE 927
GMP +FGMNDKIVIEKQG+GTAD SK SG+ SIAIDDCTFHQCVRL+KFDSE
Sbjct: 209 GMPECKFGMNDKIVIEKQGKGTADETSKRPSAPAHSGKQSIAIDDCTFHQCVRLSKFDSE 268
Query: 928 RSISFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
RSISFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 269 RSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 305
>ref|XP_858757.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 25 [Canis familiaris].
Length = 426
Score = 286 bits (731), Expect(2) = e-148
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 259 bits (662), Expect(2) = e-148
Identities = 134/154 (87%), Positives = 138/154 (89%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GT SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGT---------QSIAIDDCTFHQCVRLSKFDSERSI 254
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 255 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 288
>ref|XP_858719.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform 24 [Canis familiaris].
Length = 430
Score = 286 bits (731), Expect(2) = e-147
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 254 bits (650), Expect(2) = e-147
Identities = 132/154 (85%), Positives = 137/154 (88%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEK + SG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKPSA-----PAHSGKQSIAIDDCTFHQCVRLSKFDSERSI 258
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 259 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 292
>ref|XP_858250.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1
subunit isoform b isoform 12 [Canis familiaris].
Length = 422
Score = 282 bits (722), Expect(2) = e-145
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ 572
PQNSETGALKTFITQQGIKSQ
Sbjct: 121 PQNSETGALKTFITQQGIKSQ 141
Score = 251 bits (642), Expect(2) = e-145
Identities = 130/150 (86%), Positives = 134/150 (89%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS
Sbjct: 144 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 203
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP +FGMNDKIVIEKQG+GT SIAIDDCTFHQCVRL+KFDSERSISFIP
Sbjct: 204 GMPECKFGMNDKIVIEKQGKGT---------QSIAIDDCTFHQCVRLSKFDSERSISFIP 254
Query: 949 PDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
PDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 255 PDGEFELMRYRTTKDIILPFRVIPLVREVG 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,180,246
Number of extensions: 1243004
Number of successful extensions: 6200
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 6095
Number of HSP's successfully gapped: 101
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens]. 286 e-154
Alignment gi|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapi... 286 2e-77
Alignment gi|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens]. 139 3e-62
Alignment gi|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapie... 142 8e-62
Alignment gi|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sa... 133 3e-59
Alignment gi|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens]. 84 1e-32
Alignment gi|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens]. 84 1e-32
Alignment gi|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens]. 83 1e-31
Alignment gi|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens]. 83 4e-16
Alignment gi|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens]. 83 4e-16
>ref|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens].
Length = 435
Score = 286 bits (731), Expect(2) = e-154
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 277 bits (708), Expect(2) = e-154
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapiens].
Length = 433
Score = 286 bits (732), Expect = 2e-77
Identities = 145/163 (88%), Positives = 148/163 (90%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDRADWLAAG 638
PQNSETGALKTFITQQGIKSQ E ++ Q + W G
Sbjct: 121 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREG 163
Score = 277 bits (708), Expect = 1e-74
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 142 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 201
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 202 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 261
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 262 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 295
>ref|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens].
Length = 423
Score = 139 bits (349), Expect(2) = 3e-62
Identities = 63/136 (46%), Positives = 96/136 (70%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
+S++ VT + WR EGIKY++NE+F+DV+ESVNLL++ G VL + + G + +K +LS
Sbjct: 146 KSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLS 205
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP ++ G+ND+++ E G +S S+ ++D FHQCVRL++FD++R+ISFIP
Sbjct: 206 GMPELRLGLNDRVLFELTG--------RSKNKSVELEDVKFHQCVRLSRFDNDRTISFIP 257
Query: 949 PDGXFELMRYRTNQDI 996
PDG FELM YR + +
Sbjct: 258 PDGDFELMSYRLSTQV 273
Score = 119 bits (297), Expect(2) = 3e-62
Identities = 55/146 (37%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ + ++ F ++ ++ +P+ + + F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQHHERRAVP 596
+++ L+ +ITQQ K + + R P
Sbjct: 126 TDSKILQEYITQQSNKLETGKSRVPP 151
>ref|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapiens].
Length = 423
Score = 142 bits (357), Expect(2) = 8e-62
Identities = 65/129 (50%), Positives = 93/129 (72%)
Frame = +1
Query: 610 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQF 789
VT + WR EGIKYR+NE+FLDV+ESVNLL+S G VL + + G + M+ +LSGMP ++
Sbjct: 153 VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRL 212
Query: 790 GMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFEL 969
G+NDK++ + G+G + S+ ++D FHQCVRL++F+++R+ISFIPPDG FEL
Sbjct: 213 GLNDKVLFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL 264
Query: 970 MRYRTNQDI 996
M YR N +
Sbjct: 265 MSYRLNTHV 273
Score = 114 bits (286), Expect(2) = 8e-62
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIK 566
+++ L+ +ITQ+G K
Sbjct: 126 TDSKILQEYITQEGHK 141
>ref|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sapiens].
Length = 435
Score = 133 bits (334), Expect(2) = 3e-59
Identities = 65/141 (46%), Positives = 93/141 (65%), Gaps = 12/141 (8%)
Frame = +1
Query: 610 VTGQIGWRREGIKYRRNELFLDVLESVNLL------------MSPQGQVLSAHVSGRVVM 753
VT + WR EGIKYR+NE+FLDV+ESVNLL +S G VL + + G + M
Sbjct: 153 VTNAVSWRSEGIKYRKNEVFLDVIESVNLLGKYPGVGWLGHTVSANGNVLRSEIVGSIKM 212
Query: 754 KSYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERS 933
+ +LSGMP ++ G+NDK++ + G+G + S+ ++D FHQCVRL++F+++R+
Sbjct: 213 RVFLSGMPELRLGLNDKVLFDNTGRGKSK--------SVELEDVKFHQCVRLSRFENDRT 264
Query: 934 ISFIPPDGXFELMRYRTNQDI 996
ISFIPPDG FELM YR N +
Sbjct: 265 ISFIPPDGEFELMSYRLNTHV 285
Score = 114 bits (286), Expect(2) = 3e-59
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIK 566
+++ L+ +ITQ+G K
Sbjct: 126 TDSKILQEYITQEGHK 141
>ref|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 84.3 bits (207), Expect(2) = 1e-32
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 1e-32
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 84.3 bits (207), Expect(2) = 1e-32
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 1e-32
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens].
Length = 453
Score = 83.2 bits (204), Expect(2) = 1e-31
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L T +NV+ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ 572
Y Q + T L+ FI + + S+
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSK 142
Score = 72.4 bits (176), Expect(2) = 1e-31
Identities = 36/119 (30%), Positives = 66/119 (55%)
Frame = +1
Query: 652 RRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIEKQGQG 831
++NE+FLDV+E +++L++ G +L V G + +KS+L M+ G+ ++ + K
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGKS--- 239
Query: 832 TAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFELMRYRTNQDIILPL 1008
+ I +D+ +FH V L++F+S R + PP G +MRY+ + D+ PL
Sbjct: 240 ----ELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPL 294
>ref|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 83.2 bits (204), Expect = 4e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLSYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 1e-13
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 83.2 bits (204), Expect = 4e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLSYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 1e-13
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,325,857
Number of extensions: 1217747
Number of successful extensions: 5614
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5579
Number of HSP's successfully gapped: 21
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033809.1| AP-2 complex subunit mu [Mus musculus]. 286 e-154
Alignment gi|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus mus... 139 2e-63
Alignment gi|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus muscul... 139 2e-63
Alignment gi|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus]. 140 1e-61
Alignment gi|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus]. 84 1e-32
Alignment gi|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus]. 85 3e-31
Alignment gi|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus]. 82 5e-16
Alignment gi|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus]. 82 5e-16
Alignment gi|NP_780576.1| stonin-2 [Mus musculus]. 59 5e-09
Alignment gi|NP_084134.2| stonin-1 [Mus musculus]. 57 3e-08
>ref|NP_033809.1| AP-2 complex subunit mu [Mus musculus].
Length = 435
Score = 286 bits (731), Expect(2) = e-154
Identities = 142/145 (97%), Positives = 143/145 (98%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTFITQQGIKSQH +
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTK 145
Score = 277 bits (708), Expect(2) = e-154
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FGMNDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus musculus].
Length = 425
Score = 139 bits (349), Expect(2) = 2e-63
Identities = 64/136 (47%), Positives = 96/136 (70%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
+S++ VT + WR EGIKY++NE+F+DV+ESVNLL++ G VL + + G + +K +LS
Sbjct: 146 KSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLS 205
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP ++ G+ND+++ E G S S S+ ++D FHQCVRL++FD++R+ISFIP
Sbjct: 206 GMPELRLGLNDRVLFELTGL------SGSKNKSVELEDVKFHQCVRLSRFDNDRTISFIP 259
Query: 949 PDGXFELMRYRTNQDI 996
PDG FELM YR + +
Sbjct: 260 PDGDFELMSYRLSTQV 275
Score = 123 bits (308), Expect(2) = 2e-63
Identities = 59/146 (40%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQHHERRAVP 596
+++ L+ +ITQQG K + + R P
Sbjct: 126 TDSKILQEYITQQGNKLETGKSRVPP 151
>ref|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus musculus].
Length = 423
Score = 139 bits (349), Expect(2) = 2e-63
Identities = 63/136 (46%), Positives = 96/136 (70%)
Frame = +1
Query: 589 QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLS 768
+S++ VT + WR EGIKY++NE+F+DV+ESVNLL++ G VL + + G + +K +LS
Sbjct: 146 KSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLS 205
Query: 769 GMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIP 948
GMP ++ G+ND+++ E G +S S+ ++D FHQCVRL++FD++R+ISFIP
Sbjct: 206 GMPELRLGLNDRVLFELTG--------RSKNKSVELEDVKFHQCVRLSRFDNDRTISFIP 257
Query: 949 PDGXFELMRYRTNQDI 996
PDG FELM YR + +
Sbjct: 258 PDGDFELMSYRLSTQV 273
Score = 123 bits (308), Expect(2) = 2e-63
Identities = 59/146 (40%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQHHERRAVP 596
+++ L+ +ITQQG K + + R P
Sbjct: 126 TDSKILQEYITQQGNKLETGKSRVPP 151
>ref|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus].
Length = 423
Score = 140 bits (354), Expect(2) = 1e-61
Identities = 64/129 (49%), Positives = 93/129 (72%)
Frame = +1
Query: 610 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQF 789
VT + WR EGIKYR+NE+FLDV+E+VNLL+S G VL + + G + M+ +LSGMP ++
Sbjct: 153 VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRL 212
Query: 790 GMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFEL 969
G+NDK++ + G+G + S+ ++D FHQCVRL++F+++R+ISFIPPDG FEL
Sbjct: 213 GLNDKVLFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL 264
Query: 970 MRYRTNQDI 996
M YR N +
Sbjct: 265 MSYRLNTHV 273
Score = 114 bits (286), Expect(2) = 1e-61
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIK 566
+++ L+ +ITQ+G K
Sbjct: 126 TDSKILQEYITQEGHK 141
>ref|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus].
Length = 418
Score = 84.3 bits (207), Expect(2) = 1e-32
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 1e-32
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus].
Length = 449
Score = 84.7 bits (208), Expect(2) = 3e-31
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI-ARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L A T +NV+ + E L ++ ++ Y G ++E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTLENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ 572
Y Q + T L+ FI + + S+
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSK 142
Score = 69.3 bits (168), Expect(2) = 3e-31
Identities = 35/119 (29%), Positives = 65/119 (54%)
Frame = +1
Query: 652 RRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIEKQGQG 831
++NE+FLDV+E +++L++ G +L V G + +KS+L + G+ ++ + K
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGKS--- 239
Query: 832 TAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFELMRYRTNQDIILPL 1008
+ I +D+ +FH V L++F+S R + PP G +MRY+ + D+ PL
Sbjct: 240 ----ELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPL 294
>ref|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 82.4 bits (202), Expect = 5e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLAYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 9e-14
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 82.4 bits (202), Expect = 5e-16
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTGVKYTNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ Y + ++ + V
Sbjct: 257 FRLLAYHVSAQNLVAIPV 274
Score = 75.1 bits (183), Expect = 9e-14
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|NP_780576.1| stonin-2 [Mus musculus].
Length = 895
Score = 59.3 bits (142), Expect = 5e-09
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +1
Query: 640 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIE 816
G+ Y E+ +DV + + + Q+L HV R+ + S+LSG+ + G+ND ++
Sbjct: 560 GLNYLEEEITVDVRDEFSGTVGKGDNQILQHHVLTRIHILSFLSGLAECRLGLNDILIKG 619
Query: 817 KQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDG-XFELMRYRT 984
+ D + I + +C FH CV + F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRT 676
>ref|NP_084134.2| stonin-1 [Mus musculus].
Length = 730
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Frame = +1
Query: 649 YRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIEKQGQ 828
Y E+ LD+ +S+ ++ +GQ++ + V ++ +L+G +ND+ E Q +
Sbjct: 405 YEEQEICLDIQDSLWGKVTKEGQLVESAVVTQICCLCFLNGPAECFLALNDR---ELQKR 461
Query: 829 GTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDG-XFELMRYRTNQDI-IL 1002
+ + IAI D FH CV+ +F+ R I F+P D FELMR++T+ + L
Sbjct: 462 DECYFEKEPEKKGIAILDYHFHTCVKAEEFEQSRIIKFVPLDACRFELMRFKTSYEAGEL 521
Query: 1003 PLXVIPLVREVGA 1041
P V +V GA
Sbjct: 522 PFAVKSVVTVQGA 534
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,727,267
Number of extensions: 1010334
Number of successful extensions: 4381
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4355
Number of HSP's successfully gapped: 18
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230573.1| adaptor-related protein complex 2, mu 1 subu... 284 e-153
Alignment gi|NP_001230846.1| adaptor-related protein complex 1, mu 1 subu... 142 5e-62
Alignment gi|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [S... 84 7e-33
Alignment gi|NP_001230445.1| adaptor-related protein complex 3, mu 1 subu... 84 7e-33
Alignment gi|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus sc... 79 4e-15
Alignment gi|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-lik... 59 3e-09
>ref|NP_001230573.1| adaptor-related protein complex 2, mu 1 subunit [Sus scrofa].
Length = 435
Score = 284 bits (726), Expect(2) = e-153
Identities = 141/145 (97%), Positives = 142/145 (97%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQHHER 584
PQNSETGALKTF TQQGIKSQH +
Sbjct: 121 PQNSETGALKTFTTQQGIKSQHQTK 145
Score = 275 bits (704), Expect(2) = e-153
Identities = 139/154 (90%), Positives = 145/154 (94%)
Frame = +1
Query: 577 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 756
TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK
Sbjct: 144 TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 203
Query: 757 SYLSGMP*MQFGMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSI 936
SYLSGMP +FG+NDKIVIEKQG+GTAD SKSG+ SIAIDDCTFHQCVRL+KFDSERSI
Sbjct: 204 SYLSGMPECKFGINDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSI 263
Query: 937 SFIPPDGXFELMRYRTNQDIILPLXVIPLVREVG 1038
SFIPPDG FELMRYRT +DIILP VIPLVREVG
Sbjct: 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG 297
>ref|NP_001230846.1| adaptor-related protein complex 1, mu 1 subunit [Sus scrofa].
Length = 423
Score = 142 bits (357), Expect(2) = 5e-62
Identities = 65/129 (50%), Positives = 93/129 (72%)
Frame = +1
Query: 610 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*MQF 789
VT + WR EGIKYR+NE+FLDV+ESVNLL+S G VL + + G + M+ +LSGMP ++
Sbjct: 153 VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRL 212
Query: 790 GMNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGXFEL 969
G+NDK++ + G+G + S+ ++D FHQCVRL++F+++R+ISFIPPDG FEL
Sbjct: 213 GLNDKVLFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL 264
Query: 970 MRYRTNQDI 996
M YR N +
Sbjct: 265 MSYRLNTHV 273
Score = 114 bits (286), Expect(2) = 5e-62
Identities = 54/136 (39%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIK 566
+++ L+ +ITQ+G K
Sbjct: 126 TDSKILQEYITQEGHK 141
>ref|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [Sus scrofa].
Length = 418
Score = 84.3 bits (207), Expect(2) = 7e-33
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 7e-33
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|NP_001230445.1| adaptor-related protein complex 3, mu 1 subunit [Sus scrofa].
Length = 418
Score = 84.3 bits (207), Expect(2) = 7e-33
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR G+KY NE + DV+E ++ ++ G + A + G + LSGMP +
Sbjct: 159 TGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH C+R +++SER +SFIPPDG
Sbjct: 219 SLSFMNPRL----------------------LDDVSFHPCIRFKRWESERVLSFIPPDGN 256
Query: 961 FELMRYRTNQDIILPLXV 1014
F L+ YR + ++ + V
Sbjct: 257 FRLISYRVSSQNLVAIPV 274
Score = 74.7 bits (182), Expect(2) = 7e-33
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI 548
LD G+P +E+ LK I
Sbjct: 117 LDNGFPLATESNILKELI 134
>ref|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus scrofa].
Length = 268
Score = 79.0 bits (193), Expect = 4e-15
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Frame = +1
Query: 613 TGQIG---WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP*M 783
TGQ+ WRR +KY NE + DV+E ++ ++ G ++A + G + L+GMP +
Sbjct: 159 TGQLSVVPWRRTRVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDL 218
Query: 784 QFG-MNDKIVIEKQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDGX 960
MN ++ +DD +FH CVR +++SER +SFIPPDG
Sbjct: 219 TLSFMNPRL----------------------LDDVSFHPCVRFKRWESERILSFIPPDGN 256
Query: 961 FELMRYRTN 987
F L+ Y +
Sbjct: 257 FRLLSYHVS 265
Score = 75.1 bits (183), Expect = 6e-14
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKSQHHERRAVPNHQPGDR--ADWLAAGRHQVSPKR 662
+P +E+ LK I I R V N G D L G+ V P R
Sbjct: 121 FPLATESNILKELIKPPTI------LRTVVNTITGSTNVGDQLPTGQLSVVPWR 168
>ref|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-like [Sus scrofa].
Length = 895
Score = 59.3 bits (142), Expect = 3e-09
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +1
Query: 640 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMP*MQFGMNDKIVIE 816
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ + G+ND +V
Sbjct: 560 GLNYLEEEITVDVRDEFSGLVSKGDNQILQHCVLTRIHILSFLSGLAECRLGLNDVLVKG 619
Query: 817 KQGQGTAD*NSKSGEASIAIDDCTFHQCVRLNKFDSERSISFIPPDG-XFELMRYRT 984
+ D + I + +C FH CV + F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRT 676
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,689,431
Number of extensions: 775828
Number of successful extensions: 3613
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3594
Number of HSP's successfully gapped: 11
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007200
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 529 e-147
>Sscrofa_Chr13
|| Length = 218635234
Score = 529 bits (267), Expect = e-147
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 223 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538220 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 131538279
Query: 283 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538280 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 131538339
Query: 343 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538340 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 131538399
Query: 403 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538400 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 131538459
Query: 463 ttgtgctcatatatgagttgcttgatg 489
|||||||||||||||||||||||||||
Sbjct: 131538460 ttgtgctcatatatgagttgcttgatg 131538486
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 577 acgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcggcgg 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539870 acgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcggcgg 131539929
Query: 637 gaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaacctc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539930 gaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaacctc 131539989
Query: 697 ctcatgtccccacaggg 713
|||||||||||||||||
Sbjct: 131539990 ctcatgtccccacaggg 131540006
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 105 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536253 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 131536312
Query: 165 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536313 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 131536372
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534171 tactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttggga 131534230
Query: 61 tccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534231 tccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 131534278
Score = 210 bits (106), Expect = 1e-51
Identities = 111/113 (98%)
Strand = Plus / Plus
Query: 864 atcaattgccattgatgactgcaccttccaccagtgtgttcgactcaacaagtttgactc 923
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 131540754 atcaattgccattgatgactgcaccttccaccagtgtgttcgactcagcaagtttgactc 131540813
Query: 924 tgaacgcagcatcagcttcatcccaccagatgganaatttgagctcatgaggt 976
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 131540814 tgaacgcagcatcagcttcatcccaccagatggagaatttgagctcatgaggt 131540866
Score = 202 bits (102), Expect = 3e-49
Identities = 125/130 (96%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 712 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540094 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 131540153
Query: 772 atgccctgaatgc-agtttgggatgaatgacaagattgtcattgagaagcaggggcaagg 830
||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 131540154 atg-cctgagtgcaagtttgggatgaatgacaagattgtcattgagaagcagggcaaagg 131540212
Query: 831 cacagccgat 840
||||||||||
Sbjct: 131540213 cacagccgat 131540222
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 489 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539185 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 131539244
Query: 549 acccagcagggcatcaaaagccag 572
||||||||||||||||||||||||
Sbjct: 131539245 acccagcagggcatcaaaagccag 131539268
Score = 123 bits (62), Expect = 2e-25
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 973 aggtatcgcaccaaccaggacatcatccttcccctccnagtgatcccgctagttcgggaa 1032
||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 131540967 aggtatcgcaccaccaaggacatcatccttcccttccgagtgatcccgctagttcgggaa 131541026
Query: 1033 gt-gggcgcaccaagctggaggtca 1056
|| ||||||||||||||||||||||
Sbjct: 131541027 gtggggcgcaccaagctggaggtca 131541051
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,556,654
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 8
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)