Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029695.1| AP-2 complex subunit mu [Bos taurus]. 867 0.0
Alignment gi|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus]. 336 4e-92
Alignment gi|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus]. 328 8e-90
Alignment gi|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus]. 185 1e-46
Alignment gi|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus]. 164 3e-40
Alignment gi|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus]. 157 3e-38
Alignment gi|XP_002698754.1| PREDICTED: adaptor-related protein complex 3... 157 3e-38
Alignment gi|NP_001178147.2| stonin-2 [Bos taurus]. 78 3e-14
Alignment gi|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus]. 78 3e-14
Alignment gi|NP_001191780.1| stonin-1 [Bos taurus]. 58 4e-08
>ref|NP_001029695.1| AP-2 complex subunit mu [Bos taurus].
Length = 435
Score = 867 bits (2239), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus].
Length = 423
Score = 336 bits (862), Expect = 4e-92
Identities = 168/432 (38%), Positives = 271/432 (62%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+FI + KG+ LISR Y+ D+ + +D F ++ ++ +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEGALTPLLSHGRVHFLWIKYSNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A T +N NA++V+ FLYK+ +V + YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQQG K + +S++ VT + WR EGIKY++NE+F+DV+ESVNL
Sbjct: 126 TDSKILQEYITQQGNKLE----TGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L++ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ +
Sbjct: 182 LVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+
Sbjct: 234 EDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEI 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
V K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 294 MVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNTVIWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L ++ RPPI + FE+P F SG++VRY+K+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI +SG Y+ R
Sbjct: 410 RYITQSGDYQLR 421
>ref|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus].
Length = 423
Score = 328 bits (842), Expect = 8e-90
Identities = 169/432 (39%), Positives = 265/432 (61%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 126 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 182 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E
Sbjct: 234 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEY 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
+ KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 294 MIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L + K +PPIS+ FE+P F SG++VRYLK+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI ++G Y+ R
Sbjct: 410 RYITQNGDYQLR 421
>ref|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus].
Length = 452
Score = 185 bits (470), Expect = 1e-46
Identities = 130/463 (28%), Positives = 224/463 (48%), Gaps = 29/463 (6%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 388
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHDDRHFIHIR 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
S ++L A T +N++ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYELLDEVLDYG 120
Query: 569 YPQNSETGALKTFITQQGIKSQ------------HQTKEEQSQIT-SQVTGQIGWRREGI 709
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 121 YVQTTSTEVLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Query: 710 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 889
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
Query: 890 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 1063
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 -----SELRGYGPGIRVDEVSFHSSVYLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
Query: 1064 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1240
LPFR+ P V+ + G +L+V + ++ + P A + + +P P + + K
Sbjct: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLPPKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
Query: 1241 YKASENAIVWKIKRMAGMKESQISAEIEL------LPTNDKKKWARP----PISMNFEVP 1390
+ E A+ W + R+ G SQ+S ++ P + P P S++FE+P
Sbjct: 354 AELGEGALRWDLPRVQG--GSQLSGLFQMDVPGLPGPPGQGPSASAPLGLGPASLSFELP 411
Query: 1391 -FAPSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
SGL+VR+L++ F P N + H KWVR++ S Y R
Sbjct: 412 RHTCSGLQVRFLRLAFRPCGNANPH---KWVRHLSHSDAYVIR 451
>ref|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus].
Length = 418
Score = 164 bits (415), Expect = 3e-40
Identities = 112/451 (24%), Positives = 205/451 (45%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTF-----ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRR 721
LD G+P +E+ LK I + G+ S + + + I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSGVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus].
Length = 418
Score = 157 bits (398), Expect = 3e-38
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPRGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
>ref|XP_002698754.1| PREDICTED: adaptor-related protein complex 3, mu 2 subunit [Bos
taurus].
Length = 418
Score = 157 bits (398), Expect = 3e-38
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPRGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
>ref|NP_001178147.2| stonin-2 [Bos taurus].
Length = 897
Score = 77.8 bits (190), Expect = 3e-14
Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 48/308 (15%)
Frame = +2
Query: 704 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 880
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 881 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 1054
+ D + + I + +C FH CV F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRTVFA 681
Query: 1055 DIILPFRVIPLVREVG-----RTKLEVKVVIKSNFKP--SLLAQKIEVRIPTP------- 1192
+ LPF + G ++ L + SN+ P + + + VR P P
Sbjct: 682 EKTLPFTLRTAASIHGAEVEVQSWLRMSAGFSSNWDPLTQVPCENVMVRYPVPSEWVKNF 741
Query: 1193 -----------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRMAGMK 1297
+ SG + + G AKY+ + NAIVW+I R+
Sbjct: 742 RRESVLGEKSLKAKVNRGASFGSASISGSEPVMRVTLGTAKYEHAFNAIVWRINRLPDKN 801
Query: 1298 ESQ-----ISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 1459
+ +EL + +++ F +P + S VR + V +
Sbjct: 802 SASGHPHCFFCHLELGSDREVPSRFANHVNVEFSMPTTSASKAAVRSISVEDKT------ 855
Query: 1460 DVIKWVRY 1483
DV KWV Y
Sbjct: 856 DVRKWVNY 863
>ref|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus].
Length = 965
Score = 77.8 bits (190), Expect = 3e-14
Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 48/308 (15%)
Frame = +2
Query: 704 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 880
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 881 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 1054
+ D + + I + +C FH CV F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRTVFA 681
Query: 1055 DIILPFRVIPLVREVG-----RTKLEVKVVIKSNFKP--SLLAQKIEVRIPTP------- 1192
+ LPF + G ++ L + SN+ P + + + VR P P
Sbjct: 682 EKTLPFTLRTAASIHGAEVEVQSWLRMSAGFSSNWDPLTQVPCENVMVRYPVPSEWVKNF 741
Query: 1193 -----------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRMAGMK 1297
+ SG + + G AKY+ + NAIVW+I R+
Sbjct: 742 RRESVLGEKSLKAKVNRGASFGSASISGSEPVMRVTLGTAKYEHAFNAIVWRINRLPDKN 801
Query: 1298 ESQ-----ISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 1459
+ +EL + +++ F +P + S VR + V +
Sbjct: 802 SASGHPHCFFCHLELGSDREVPSRFANHVNVEFSMPTTSASKAAVRSISVEDKT------ 855
Query: 1460 DVIKWVRY 1483
DV KWV Y
Sbjct: 856 DVRKWVNY 863
>ref|NP_001191780.1| stonin-1 [Bos taurus].
Length = 732
Score = 57.8 bits (138), Expect = 4e-08
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 45/242 (18%)
Frame = +2
Query: 713 YRRNELFLDVLESV-NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 889
Y E+FL+++++ + +G+++ + V ++ +++G EC +ND + ++
Sbjct: 406 YEEQEIFLEIVDNFWGKITKEEGKLVESAVITQISCLCFVNGNTECFLTLNDHELQKRNE 465
Query: 890 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-KDII 1063
+ + K G I I D FH+CV+ +F+ R I F+P D FELMR++T+
Sbjct: 466 RYFEKDPEKKG---IDILDYHFHKCVKAQEFEQSRIIKFVPLDACRFELMRFKTSHSGED 522
Query: 1064 LPFRVIPLVREVGRTKLEVKVVIKSNFKPSL----------LAQKIEVRIPTP------L 1195
LPF + +V G +E++ + N P + I + P P L
Sbjct: 523 LPFSLKSVVVVQG-AYVELQAFV--NMAPLVQRPSHAGSWRSCDNIMIHFPVPSQWIKAL 579
Query: 1196 NTSGVQ--------------------------VICMKGKAKYKASENAIVWKIKRMAGMK 1297
T +Q + G AKY+++ A+VWKI R+
Sbjct: 580 WTMNLQRQKSLKAKMNRRACLGSLHELESEPVIQVTVGSAKYESAYRAVVWKIDRLPDKN 639
Query: 1298 ES 1303
S
Sbjct: 640 SS 641
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 78,959,898
Number of extensions: 2344633
Number of successful extensions: 9721
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9660
Number of HSP's successfully gapped: 10
Length of query: 680
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 571
Effective length of database: 14,074,782
Effective search space: 8036700522
Effective search space used: 8036700522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858515.1| PREDICTED: similar to adaptor-related protein c... 867 0.0
Alignment gi|XP_849091.1| PREDICTED: similar to adaptor-related protein c... 867 0.0
Alignment gi|XP_858405.1| PREDICTED: similar to adaptor-related protein c... 862 0.0
Alignment gi|XP_858593.1| PREDICTED: similar to adaptor-related protein c... 857 0.0
Alignment gi|XP_858087.1| PREDICTED: similar to adaptor-related protein c... 857 0.0
Alignment gi|XP_858550.1| PREDICTED: similar to adaptor-related protein c... 854 0.0
Alignment gi|XP_858327.1| PREDICTED: similar to adaptor-related protein c... 849 0.0
Alignment gi|XP_858479.1| PREDICTED: similar to adaptor-related protein c... 847 0.0
Alignment gi|XP_858757.1| PREDICTED: similar to adaptor-related protein c... 842 0.0
Alignment gi|XP_858719.1| PREDICTED: similar to adaptor-related protein c... 838 0.0
>ref|XP_858515.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 19 [Canis familiaris].
Length = 435
Score = 867 bits (2239), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|XP_849091.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 1 [Canis familiaris].
Length = 435
Score = 867 bits (2239), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|XP_858405.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 16 [Canis familiaris].
Length = 437
Score = 862 bits (2226), Expect = 0.0
Identities = 435/437 (99%), Positives = 435/437 (99%), Gaps = 2/437 (0%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIG--RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 385
MIGGLFIYNHKGEVLISRVYRDDIG RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGNRRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 60
Query: 386 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 565
KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
Sbjct: 61 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 120
Query: 566 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL 745
GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
Sbjct: 121 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL 180
Query: 746 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 925
ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK
Sbjct: 181 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 240
Query: 926 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 1105
QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR
Sbjct: 241 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 300
Query: 1106 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 1285
TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM
Sbjct: 301 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 360
Query: 1286 AGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDV 1465
AGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDV
Sbjct: 361 AGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDV 420
Query: 1466 IKWVRYIGRSGIYETRC 1516
IKWVRYIGRSGIYETRC
Sbjct: 421 IKWVRYIGRSGIYETRC 437
>ref|XP_858593.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 21 [Canis familiaris].
Length = 433
Score = 857 bits (2213), Expect = 0.0
Identities = 433/435 (99%), Positives = 433/435 (99%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 178
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 179 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 238
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 239 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 298
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 299 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 358
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 359 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 418
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 419 WVRYIGRSGIYETRC 433
>ref|XP_858087.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 8 [Canis familiaris].
Length = 433
Score = 857 bits (2213), Expect = 0.0
Identities = 433/435 (99%), Positives = 433/435 (99%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 178
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 179 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 238
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 239 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 298
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 299 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 358
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 359 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 418
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 419 WVRYIGRSGIYETRC 433
>ref|XP_858550.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 20 [Canis familiaris].
Length = 440
Score = 854 bits (2207), Expect = 0.0
Identities = 433/440 (98%), Positives = 433/440 (98%), Gaps = 5/440 (1%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQ-----HQTKEEQSQITSQVTGQIGWRREGIKYRRNELFL 736
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFL
Sbjct: 121 PQNSETGALKTFITQQGIKSQVLPCIATTKEEQSQITSQVTGQIGWRREGIKYRRNELFL 180
Query: 737 DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 916
DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK
Sbjct: 181 DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 240
Query: 917 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE 1096
SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE
Sbjct: 241 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE 300
Query: 1097 VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI 1276
VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI
Sbjct: 301 VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI 360
Query: 1277 KRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSD 1456
KRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSD
Sbjct: 361 KRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSD 420
Query: 1457 HDVIKWVRYIGRSGIYETRC 1516
HDVIKWVRYIGRSGIYETRC
Sbjct: 421 HDVIKWVRYIGRSGIYETRC 440
>ref|XP_858327.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 14 [Canis familiaris].
Length = 445
Score = 849 bits (2193), Expect = 0.0
Identities = 433/445 (97%), Positives = 433/445 (97%), Gaps = 10/445 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQ---TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV 742
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV
Sbjct: 121 PQNSETGALKTFITQQGIKSQFSSGPTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV 180
Query: 743 LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK-- 916
LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK
Sbjct: 181 LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKRP 240
Query: 917 -----SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 1081
SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI
Sbjct: 241 SAPAHSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 300
Query: 1082 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA 1261
PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA
Sbjct: 301 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA 360
Query: 1262 IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPK 1441
IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPK
Sbjct: 361 IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPK 420
Query: 1442 LNYSDHDVIKWVRYIGRSGIYETRC 1516
LNYSDHDVIKWVRYIGRSGIYETRC
Sbjct: 421 LNYSDHDVIKWVRYIGRSGIYETRC 445
>ref|XP_858479.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 18 [Canis familiaris].
Length = 431
Score = 847 bits (2189), Expect = 0.0
Identities = 429/435 (98%), Positives = 429/435 (98%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQ QSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQ----SGQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 176
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 177 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 236
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 237 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 296
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 297 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 356
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 357 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 416
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 417 WVRYIGRSGIYETRC 431
>ref|XP_858757.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 25 [Canis familiaris].
Length = 426
Score = 842 bits (2175), Expect = 0.0
Identities = 426/435 (97%), Positives = 426/435 (97%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT QS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT---------QS 231
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 232 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 291
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 292 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 351
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 352 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 411
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 412 WVRYIGRSGIYETRC 426
>ref|XP_858719.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 24 [Canis familiaris].
Length = 430
Score = 838 bits (2164), Expect = 0.0
Identities = 424/435 (97%), Positives = 425/435 (97%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK + SGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK-----PSAPAHSGKQS 235
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 236 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 295
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 296 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 355
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 356 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 415
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 416 WVRYIGRSGIYETRC 430
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,370,336
Number of extensions: 2386531
Number of successful extensions: 10375
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 10175
Number of HSP's successfully gapped: 62
Length of query: 680
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 570
Effective length of database: 15,207,544
Effective search space: 8668300080
Effective search space used: 8668300080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens]. 867 0.0
Alignment gi|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapi... 857 0.0
Alignment gi|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens]. 332 1e-90
Alignment gi|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapie... 328 9e-90
Alignment gi|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sa... 320 4e-87
Alignment gi|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens]. 183 6e-46
Alignment gi|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens]. 162 1e-39
Alignment gi|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens]. 162 1e-39
Alignment gi|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens]. 157 3e-38
Alignment gi|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens]. 157 3e-38
>ref|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens].
Length = 435
Score = 867 bits (2239), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapiens].
Length = 433
Score = 857 bits (2213), Expect = 0.0
Identities = 433/435 (99%), Positives = 433/435 (99%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 178
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 179 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 238
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 239 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 298
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 299 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 358
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 359 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 418
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 419 WVRYIGRSGIYETRC 433
>ref|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens].
Length = 423
Score = 332 bits (850), Expect = 1e-90
Identities = 165/432 (38%), Positives = 267/432 (61%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+FI + KG+ LISR Y+ D+ + ++ F ++ ++ +P+ + + F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQQ K + +S++ VT + WR EGIKY++NE+F+DV+ESVNL
Sbjct: 126 TDSKILQEYITQQSNKLE----TGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L++ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ +
Sbjct: 182 LVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+
Sbjct: 234 EDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEI 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
V K FK +A +E+ +P P + + G AKY N ++W IK G KE
Sbjct: 294 MVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L ++ RPPI + FE+P F SG++VRY+K+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI +SG Y+ R
Sbjct: 410 RYITQSGDYQLR 421
>ref|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapiens].
Length = 423
Score = 328 bits (842), Expect = 9e-90
Identities = 169/432 (39%), Positives = 265/432 (61%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 126 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 182 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E
Sbjct: 234 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEY 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
+ KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 294 MIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L + K +PPIS+ FE+P F SG++VRYLK+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI ++G Y+ R
Sbjct: 410 RYITQNGDYQLR 421
>ref|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sapiens].
Length = 435
Score = 320 bits (819), Expect = 4e-87
Identities = 169/444 (38%), Positives = 265/444 (59%), Gaps = 14/444 (3%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 126 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 181
Query: 761 L------------MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 904
L +S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G +
Sbjct: 182 LGKYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS- 240
Query: 905 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIP 1084
+S+ ++D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + +
Sbjct: 241 -------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIES 293
Query: 1085 LVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 1264
++ + +++E + KS FK A +E+ IP P + + G K+ + I
Sbjct: 294 VIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEI 353
Query: 1265 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPK 1441
VW IK G KE + A L + K +PPIS+ FE+P F SG++VRYLK+ E
Sbjct: 354 VWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK- 412
Query: 1442 LNYSDHDVIKWVRYIGRSGIYETR 1513
S + + WVRYI ++G Y+ R
Sbjct: 413 ---SGYQALPWVRYITQNGDYQLR 433
>ref|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens].
Length = 453
Score = 183 bits (464), Expect = 6e-46
Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 30/464 (6%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 388
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
S ++L T +NV+ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
Query: 569 YPQNSETGALKTFITQQGIKSQ------------HQTKEEQSQIT-SQVTGQIGWRREGI 709
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Query: 710 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 889
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
Query: 890 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 1063
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 -----SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
Query: 1064 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1240
LPFR+ P V+ + G +L+V + ++ + A + + +P P + + K
Sbjct: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
Query: 1241 YKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARP----PISMNFEV 1387
+ +E A+ W + R+ G SQ+S ++ P++ A P P S++FE+
Sbjct: 354 AELAEGALRWDLPRVQG--GSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFEL 411
Query: 1388 P-FAPSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
P SGL+VR+L++ F P N + H KWVR++ S Y R
Sbjct: 412 PRHTCSGLQVRFLRLAFRPCGNANPH---KWVRHLSHSDAYVIR 452
>ref|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 162 bits (410), Expect = 1e-39
Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRR 721
LD G+P +E+ LK I I +S + S + + TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 162 bits (410), Expect = 1e-39
Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRR 721
LD G+P +E+ LK I I +S + S + + TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 157 bits (398), Expect = 3e-38
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
>ref|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 157 bits (398), Expect = 3e-38
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,643,248
Number of extensions: 2326303
Number of successful extensions: 9467
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 9396
Number of HSP's successfully gapped: 16
Length of query: 680
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 571
Effective length of database: 14,704,088
Effective search space: 8396034248
Effective search space used: 8396034248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033809.1| AP-2 complex subunit mu [Mus musculus]. 867 0.0
Alignment gi|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus mus... 337 3e-92
Alignment gi|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus muscul... 336 4e-92
Alignment gi|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus]. 327 2e-89
Alignment gi|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus]. 186 8e-47
Alignment gi|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus]. 162 1e-39
Alignment gi|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus]. 155 1e-37
Alignment gi|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus]. 155 1e-37
Alignment gi|NP_780576.1| stonin-2 [Mus musculus]. 76 1e-13
Alignment gi|NP_084134.2| stonin-1 [Mus musculus]. 69 1e-11
>ref|NP_033809.1| AP-2 complex subunit mu [Mus musculus].
Length = 435
Score = 867 bits (2239), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus musculus].
Length = 425
Score = 337 bits (863), Expect = 3e-92
Identities = 170/432 (39%), Positives = 269/432 (62%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQQG K + +S++ VT + WR EGIKY++NE+F+DV+ESVNL
Sbjct: 126 TDSKILQEYITQQGNKLE----TGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L++ G VL + + G + +K +LSGMPE + G+ND+++ E G S S +S+ +
Sbjct: 182 LVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTG------LSGSKNKSVEL 235
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+
Sbjct: 236 EDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEI 295
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
V K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 296 MVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKE 355
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L ++ RPPI + FE+P F SG++VRY+K+ E S + + WV
Sbjct: 356 YLMRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWV 411
Query: 1478 RYIGRSGIYETR 1513
RYI +SG Y+ R
Sbjct: 412 RYITQSGDYQLR 423
>ref|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus musculus].
Length = 423
Score = 336 bits (862), Expect = 4e-92
Identities = 169/432 (39%), Positives = 269/432 (62%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQQG K + +S++ VT + WR EGIKY++NE+F+DV+ESVNL
Sbjct: 126 TDSKILQEYITQQGNKLE----TGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L++ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ +
Sbjct: 182 LVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+
Sbjct: 234 EDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEI 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
V K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 294 MVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L ++ RPPI + FE+P F SG++VRY+K+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI +SG Y+ R
Sbjct: 410 RYITQSGDYQLR 421
>ref|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus].
Length = 423
Score = 327 bits (839), Expect = 2e-89
Identities = 168/432 (38%), Positives = 265/432 (61%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+E+VNL
Sbjct: 126 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 182 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E
Sbjct: 234 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEY 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
V KS FK A +E+ IP P + + G K+ + IVW +K G KE
Sbjct: 294 MVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L + K +PPIS+ FE+P F SG++VRYLK+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI ++G Y+ R
Sbjct: 410 RYITQNGDYQLR 421
>ref|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus].
Length = 449
Score = 186 bits (471), Expect = 8e-47
Identities = 131/461 (28%), Positives = 223/461 (48%), Gaps = 27/461 (5%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI-ARTSFFHVK 388
MI FI + KG+ LI + +R D G V + SPV F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIR 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
S ++L A T +NV+ + E L ++ ++ Y G ++E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTLENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYG 120
Query: 569 YPQNSETGALKTFITQQGIKSQ--------------HQTKEEQSQITSQVTGQIGWRREG 706
Y Q + T L+ FI + + S+ +T++ + +S + + R
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSD 180
Query: 707 IKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ 886
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E G+ ++ + K
Sbjct: 181 -QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGK- 238
Query: 887 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI-- 1060
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 ------SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPS 292
Query: 1061 ILPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA 1237
LPFR+ P V+ + G +L+V + ++ + P A I + +P P +
Sbjct: 293 PLPFRLFPSVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPRGVISLSQELSSPDQ 352
Query: 1238 KYKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARPPISMNFEVP-F 1393
K + E A+ W + R+ G SQ+S ++ LP + P S++FE+P
Sbjct: 353 KAELGEGALHWDLPRVQG--GSQLSGLFQMDVPGLQGLPNHGPSPLGLGPASLSFELPRH 410
Query: 1394 APSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
SGL+VR+L++ F N + H KWVR++ S Y R
Sbjct: 411 TCSGLQVRFLRLSFSACGNANPH---KWVRHLSHSNAYVIR 448
>ref|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus].
Length = 418
Score = 162 bits (409), Expect = 1e-39
Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRR 721
LD G+P +E+ LK I I +S + S + + TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLAWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 155 bits (392), Expect = 1e-37
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 SISFRDSSSLGRFEITVGPKQTMGKTI--EGVIVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMG-LQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
>ref|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 155 bits (392), Expect = 1e-37
Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 13/447 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1078
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKH 278
Query: 1079 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1255
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 SISFRDSSSLGRFEITVGPKQTMGKTI--EGVIVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1256 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVF 1432
+ W + ++ K + + L K P I++ F++ A SGLKV L ++
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMG-LQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMY 395
Query: 1433 EPKLNYSDHDVIKWVRYIGRSGIYETR 1513
K + K ++Y+ ++G ++ R
Sbjct: 396 GEK-----YKPFKGIKYMTKAGKFQVR 417
>ref|NP_780576.1| stonin-2 [Mus musculus].
Length = 895
Score = 75.9 bits (185), Expect = 1e-13
Identities = 78/309 (25%), Positives = 128/309 (41%), Gaps = 49/309 (15%)
Frame = +2
Query: 704 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 880
G+ Y E+ +DV + + + Q+L HV R+ + S+LSG+ EC+ G+ND ++
Sbjct: 560 GLNYLEEEITVDVRDEFSGTVGKGDNQILQHHVLTRIHILSFLSGLAECRLGLNDILIKG 619
Query: 881 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 1054
+ D + + I + +C FH CV F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRTVFA 679
Query: 1055 DIILPFRVIPLVREVGRTKLEVKVVIK------SNFKP--SLLAQKIEVRIPTP------ 1192
+ LPF + + ++EV+ ++ SN P + + + VR P P
Sbjct: 680 EKTLPF-TLRTAASINGAEVEVQSWLRMSPGFSSNRDPLTQVPCENVMVRYPVPSEWVKN 738
Query: 1193 ------------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRMAGM 1294
SG + + G AKY+ + N+IVW+I R+
Sbjct: 739 FRRDSVLGEKSLKAKVNRGASFGSAGASGSEPVMRVTLGTAKYEHAFNSIVWRINRLPDK 798
Query: 1295 KESQ-----ISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSD 1456
+ +EL + +++ F +P + S VR + V +
Sbjct: 799 NSASGHPHCFFCHLELGSDREVPSRFANYVNVEFSMPTTSASKAAVRSVSVEDKP----- 853
Query: 1457 HDVIKWVRY 1483
DV KWV Y
Sbjct: 854 -DVRKWVNY 861
>ref|NP_084134.2| stonin-1 [Mus musculus].
Length = 730
Score = 68.9 bits (167), Expect = 1e-11
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Frame = +2
Query: 713 YRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK 892
Y E+ LD+ +S+ ++ +GQ++ + V ++ +L+G EC +ND+ E Q +
Sbjct: 405 YEEQEICLDIQDSLWGKVTKEGQLVESAVVTQICCLCFLNGPAECFLALNDR---ELQKR 461
Query: 893 GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTTKDI-IL 1066
+ K+ IAI D FH CV+ +F+ R I F+P D FELMR++T+ + L
Sbjct: 462 DECYFEKEPEKKGIAILDYHFHTCVKAEEFEQSRIIKFVPLDACRFELMRFKTSYEAGEL 521
Query: 1067 PFRVIPLVREVGRTKLEVKVVIKSNFKPSL----------LAQKIEVRIPTP------LN 1198
PF V +V G +E++ + N P+ I + P P L
Sbjct: 522 PFAVKSVVTVQG-AYVELQAFV--NMTPAAQGSPHAGALRSCNNIMIHFPVPAQWIKALW 578
Query: 1199 TSGVQ--------------------------VICMKGKAKYKASENAIVWKIKRMAGMKE 1300
T +Q + G AKY+++ A+VWKI R+
Sbjct: 579 TRNLQRQKSLKAKMNRRACLGSLQEPESEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNS 638
Query: 1301 S 1303
S
Sbjct: 639 S 639
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,023,624
Number of extensions: 1930852
Number of successful extensions: 7522
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7473
Number of HSP's successfully gapped: 10
Length of query: 680
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 572
Effective length of database: 12,373,671
Effective search space: 7077739812
Effective search space used: 7077739812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230573.1| adaptor-related protein complex 2, mu 1 subu... 863 0.0
Alignment gi|NP_001230846.1| adaptor-related protein complex 1, mu 1 subu... 325 4e-89
Alignment gi|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [S... 162 9e-40
Alignment gi|NP_001230445.1| adaptor-related protein complex 3, mu 1 subu... 162 9e-40
Alignment gi|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus sc... 142 5e-34
Alignment gi|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-lik... 78 2e-14
Alignment gi|XP_003123264.1| PREDICTED: AP-1 complex subunit mu-2-like [S... 52 1e-06
>ref|NP_001230573.1| adaptor-related protein complex 2, mu 1 subunit [Sus scrofa].
Length = 435
Score = 863 bits (2230), Expect = 0.0
Identities = 433/435 (99%), Positives = 434/435 (99%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 391
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 392 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 571
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 572 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 751
PQNSETGALKTF TQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFTTQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 752 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 931
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG+NDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGINDKIVIEKQGKGTADETSKSGKQS 240
Query: 932 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1111
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1112 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1291
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1292 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 1471
MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK 420
Query: 1472 WVRYIGRSGIYETRC 1516
WVRYIGRSGIYETRC
Sbjct: 421 WVRYIGRSGIYETRC 435
>ref|NP_001230846.1| adaptor-related protein complex 1, mu 1 subunit [Sus scrofa].
Length = 423
Score = 325 bits (834), Expect = 4e-89
Identities = 168/432 (38%), Positives = 264/432 (61%), Gaps = 2/432 (0%)
Frame = +2
Query: 224 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 400
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 401 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 580
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 581 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 760
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 126 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 181
Query: 761 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 940
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 182 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 233
Query: 941 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 1120
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E
Sbjct: 234 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEY 293
Query: 1121 KVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKE 1300
+ KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 294 MIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKE 353
Query: 1301 SQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWV 1477
+ A L + K +PPIS+ FE+P F SG++VRYLK+ E S + + WV
Sbjct: 354 YLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWV 409
Query: 1478 RYIGRSGIYETR 1513
RYI ++ Y+ R
Sbjct: 410 RYITQNEDYQLR 421
>ref|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [Sus scrofa].
Length = 418
Score = 162 bits (409), Expect = 9e-40
Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRR 721
LD G+P +E+ LK I I +S + S + + TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|NP_001230445.1| adaptor-related protein complex 3, mu 1 subunit [Sus scrofa].
Length = 418
Score = 162 bits (409), Expect = 9e-40
Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 17/451 (3%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 376
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 377 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 556
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 557 LDFGYPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRR 721
LD G+P +E+ LK I I +S + S + + TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTN 176
Query: 722 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGT 898
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL--------- 227
Query: 899 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 1078
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++ V
Sbjct: 228 -------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPV 274
Query: 1079 -----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKY 1243
I + ++ + K N ++ + I V + P + + +G +
Sbjct: 275 YVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTF 332
Query: 1244 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRY 1420
+ W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 333 DPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVNR 391
Query: 1421 LKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 1513
L ++ K + K V+Y+ ++G ++ R
Sbjct: 392 LDMYGEK-----YKPFKGVKYVTKAGKFQVR 417
>ref|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus scrofa].
Length = 268
Score = 142 bits (359), Expect = 5e-34
Identities = 89/287 (31%), Positives = 142/287 (49%), Gaps = 7/287 (2%)
Frame = +2
Query: 212 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 388
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 389 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 568
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 569 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 733
+P +E+ LK I I ++ T + + Q+ TGQ+ WRR +KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTRVKYTNNEAY 180
Query: 734 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 910
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 911 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTT 1051
+DD +FH CVR +++SER +SFIPPDG F L+ Y +
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-like [Sus scrofa].
Length = 895
Score = 78.2 bits (191), Expect = 2e-14
Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 49/309 (15%)
Frame = +2
Query: 704 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 880
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 560 GLNYLEEEITVDVRDEFSGLVSKGDNQILQHCVLTRIHILSFLSGLAECRLGLNDVLVKG 619
Query: 881 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 1054
+ D + + I + +C FH CV F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRTVFA 679
Query: 1055 DIILPFRVIPLVREVGRTKLEVKVVIK------SNFKP--SLLAQKIEVRIPTP------ 1192
+ LPF + V + ++EV+ ++ SN P + + + VR P P
Sbjct: 680 EKTLPF-TLRTVASINGAEVEVQSWLRMSTGFSSNCDPLTQVPCENVMVRYPVPSEWVKN 738
Query: 1193 ------------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRMAGM 1294
+ SG + + G AKY+ + N+IVW+I R+
Sbjct: 739 FRRESVLGEKSLKAKVNRGASFGSTSVSGSEPVMRVTLGTAKYEHAFNSIVWRITRLPDK 798
Query: 1295 KESQ-----ISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSD 1456
+ +EL + +++ F +P + S VR + V +
Sbjct: 799 NSASGHPHCFFCHLELGSDREVPSRFANYVNVEFSMPTTSASKAAVRSISVEDKT----- 853
Query: 1457 HDVIKWVRY 1483
DV KWV Y
Sbjct: 854 -DVRKWVNY 861
>ref|XP_003123264.1| PREDICTED: AP-1 complex subunit mu-2-like [Sus scrofa].
Length = 68
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +2
Query: 1328 LPTNDKKKW-ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGI 1501
LP+ +K++ RPPI + FE+P F SG++VRY+K+ E S + + WVRYI +SG
Sbjct: 7 LPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGYQALPWVRYITQSGD 62
Query: 1502 YETR 1513
Y+ R
Sbjct: 63 YQLR 66
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,356,820
Number of extensions: 1569802
Number of successful extensions: 6325
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6295
Number of HSP's successfully gapped: 7
Length of query: 680
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 574
Effective length of database: 8,704,850
Effective search space: 4996583900
Effective search space used: 4996583900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007201
(2041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1193 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1193 bits (602), Expect = 0.0
Identities = 609/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 1383 aggtgccattcgcgccttctggcctcaaggtgcgctacttgaaggtgtttgaaccgaagc 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542567 aggtgccattcgcgccttctggcctcaaggtgcgctacttgaaggtgtttgaaccgaagc 131542626
Query: 1443 tgaactacagcgaccacgatgtcatcaaatgggtgcgctacattggccgcagtggcattt 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542627 tgaactacagcgaccacgatgtcatcaaatgggtgcgctacattggccgcagtggcattt 131542686
Query: 1503 atgagacccgctgctagctgcctagtgacagctagcccgtctccccacccaccctcttcc 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542687 atgagacccgctgctagctgcctagtgacagctagcccgtctccccacccaccctcttcc 131542746
Query: 1563 acaggtctgggtgccctcggccaccacacatcagtgtctcctccctcctgctttgctgcc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542747 acaggtctgggtgccctcggccaccacacatcagtgtctcctccctcctgctttgctgcc 131542806
Query: 1623 ttccctttgcaccagcccctgagtctaggtctggaccaaccatgttgcaagcgggactgg 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542807 ttccctttgcaccagcccctgagtctaggtctggaccaaccatgttgcaagcgggactgg 131542866
Query: 1683 tggaacagtccctgggctccctgggcagggtggtttctgaggctcctgctcttccatcca 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542867 tggaacagtccctgggctccctgggcagggtggtttctgaggctcctgctcttccatcca 131542926
Query: 1743 tctgccagccctggcccaatgccaggctctgagttctgtgaccaaagtcagatgggcccc 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542927 tctgccagccctggcccaatgccaggctctgagttctgtgaccaaagtcagatgggcccc 131542986
Query: 1803 ttctcctcccctcccctatggccacatctctctggagtgggagggttggctgcccctcac 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542987 ttctcctcccctcccctatggccacatctctctggagtgggagggttggctgcccctcac 131543046
Query: 1863 ctcggagctcccccaaaggccagtaacggatccccagccctcaattcctactctgc-ttg 1921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 131543047 ctcggagctcccccaaaggccagtaacggatccccagccctcaattcctactctgctttg 131543106
Query: 1922 ggctagtgtgagcttcattttgtacacttgtgacttcgtccagttataaacccaataaac 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131543107 ggctagtgtgagcttcattttgtacacttgtgacttcgtccagttataaacccaataaac 131543166
Query: 1982 tctgtagaac 1991
||||||||||
Sbjct: 131543167 tctgtagaac 131543176
Score = 529 bits (267), Expect = e-147
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 285 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538220 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 131538279
Query: 345 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538280 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 131538339
Query: 405 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538340 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 131538399
Query: 465 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538400 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 131538459
Query: 525 ttgtgctcatatatgagttgcttgatg 551
|||||||||||||||||||||||||||
Sbjct: 131538460 ttgtgctcatatatgagttgcttgatg 131538486
Score = 321 bits (162), Expect = 9e-85
Identities = 168/170 (98%)
Strand = Plus / Plus
Query: 1 gatttgtagtctgcgccgacggcggcctcgcacgcgcagctgaggccggggcggggccga 60
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 131534109 gatttgtagtctgcgccgacggcggacgcgcacgcgcagctgaggccggggcggggccga 131534168
Query: 61 gatactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534169 gatactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttgg 131534228
Query: 121 gatccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534229 gatccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 131534278
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1037 aggtatcgcaccaccaaggacatcatccttcccttccgagtgatcccgctagttcgggaa 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540967 aggtatcgcaccaccaaggacatcatccttcccttccgagtgatcccgctagttcgggaa 131541026
Query: 1097 gtggggcgcaccaagctggaggtcaaggtggtcattaagtccaacttcaagccctcacta 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541027 gtggggcgcaccaagctggaggtcaaggtggtcattaagtccaacttcaagccctcacta 131541086
Query: 1157 ctggctcagaagattgaggtgaggat 1182
||||||||||||||||||||||||||
Sbjct: 131541087 ctggctcagaagattgaggtgaggat 131541112
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 776 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540094 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 131540153
Query: 836 atgcctgagtgcaagtttgggatgaatgacaagattgtcattgagaagcagggcaaaggc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540154 atgcctgagtgcaagtttgggatgaatgacaagattgtcattgagaagcagggcaaaggc 131540213
Query: 896 acagccgatgaaacaagcaagag 918
|||||||||||||||||||||||
Sbjct: 131540214 acagccgatgaaacaagcaagag 131540236
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 638 cagacgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcgg 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539867 cagacgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcgg 131539926
Query: 698 cgggaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaac 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539927 cgggaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaac 131539986
Query: 758 ctcctcatgtccccacaggg 777
||||||||||||||||||||
Sbjct: 131539987 ctcctcatgtccccacaggg 131540006
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 917 agcgggaagcaatcaattgccattgatgactgcaccttccaccagtgtgttcgactcagc 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540743 agcgggaagcaatcaattgccattgatgactgcaccttccaccagtgtgttcgactcagc 131540802
Query: 977 aagtttgactctgaacgcagcatcagcttcatcccaccagatggagaatttgagctcatg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540803 aagtttgactctgaacgcagcatcagcttcatcccaccagatggagaatttgagctcatg 131540862
Query: 1037 aggt 1040
||||
Sbjct: 131540863 aggt 131540866
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 167 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536253 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 131536312
Query: 227 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536313 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 131536372
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1273 gatcaagcgcatggcaggcatgaaggaatcacagatcagcgctgagattgagcttctgcc 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541803 gatcaagcgcatggcaggcatgaaggaatcacagatcagcgctgagattgagcttctgcc 131541862
Query: 1333 caccaatgacaagaagaaatgggctcgaccccccatttcgatgaactttgaggt 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541863 caccaatgacaagaagaaatgggctcgaccccccatttcgatgaactttgaggt 131541916
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1173 aggtgaggatcccaaccccactgaacaccagcggggtgcaggtgatctgcatgaagggga 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541206 aggtgaggatcccaaccccactgaacaccagcggggtgcaggtgatctgcatgaagggga 131541265
Query: 1233 aggctaagtacaaggccagcgagaacgccatcgtgtggaag 1273
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541266 aggctaagtacaaggccagcgagaacgccatcgtgtggaag 131541306
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 551 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539185 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 131539244
Query: 611 acccagcagggcatcaaaagccag 634
||||||||||||||||||||||||
Sbjct: 131539245 acccagcagggcatcaaaagccag 131539268
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,541,223
Number of extensions: 369
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 11
Length of query: 2041
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2019
Effective length of database: 2,808,408,574
Effective search space: 5670176910906
Effective search space used: 5670176910906
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)