Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029695.1| AP-2 complex subunit mu [Bos taurus]. 788 0.0
Alignment gi|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus]. 318 5e-87
Alignment gi|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus]. 311 7e-85
Alignment gi|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus]. 172 6e-43
Alignment gi|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus]. 155 8e-38
Alignment gi|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus]. 149 6e-36
Alignment gi|XP_002698754.1| PREDICTED: adaptor-related protein complex 3... 149 6e-36
Alignment gi|NP_001178147.2| stonin-2 [Bos taurus]. 75 1e-13
Alignment gi|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus]. 75 1e-13
Alignment gi|NP_001191780.1| stonin-1 [Bos taurus]. 58 2e-08
>ref|NP_001029695.1| AP-2 complex subunit mu [Bos taurus].
Length = 435
Score = 788 bits (2034), Expect = 0.0
Identities = 401/404 (99%), Positives = 401/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus].
Length = 423
Score = 318 bits (816), Expect = 5e-87
Identities = 157/400 (39%), Positives = 255/400 (63%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ + +D F ++ ++ +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEGALTPLLSHGRVHFLWIKYSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK+ +V + YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQQG K +T + S++ VT + WR EGIKY++NE+F+DV+ESVNLL+
Sbjct: 126 TDSKILQEYITQQGNKLETGK--SRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
+ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ ++D
Sbjct: 184 NANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+ V
Sbjct: 236 VKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMV 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 296 KAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNTVIWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L ++ RPPI + FE+P F SG++VRY+
Sbjct: 356 MRAHFGLPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYM 395
>ref|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus].
Length = 423
Score = 311 bits (798), Expect = 7e-85
Identities = 160/400 (40%), Positives = 248/400 (62%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+ESVNLL+
Sbjct: 126 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ ++D
Sbjct: 184 SANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E +
Sbjct: 236 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L + K +PPIS+ FE+P F SG++VRYL
Sbjct: 356 MRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 395
>ref|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus].
Length = 452
Score = 172 bits (436), Expect = 6e-43
Identities = 119/432 (27%), Positives = 208/432 (48%), Gaps = 30/432 (6%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHDDRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L A T +N++ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ--------------TKEEQSQIT-SQVTGQIGWRREGI 641
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 121 YVQTTSTEVLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Query: 642 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 821
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
Query: 822 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 995
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 -----SELRGYGPGIRVDEVSFHSSVYLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
Query: 996 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
LPFR+ P V+ + G +L+V + ++ + P A + + +P P + + K
Sbjct: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLPPKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIEL------LPTNDKKKWARP----PISMTFEVP 1322
+ E A+ W + R+ G SQ+S ++ P + P P S++FE+P
Sbjct: 354 AELGEGALRWDLPRVQG--GSQLSGLFQMDVPGLPGPPGQGPSASAPLGLGPASLSFELP 411
Query: 1323 -FAPSGLKVRYL 1355
SGL+VR+L
Sbjct: 412 RHTCSGLQVRFL 423
>ref|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus].
Length = 418
Score = 155 bits (392), Expect = 8e-38
Identities = 111/422 (26%), Positives = 192/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTF-----ITQQGIKSQTKEEQSQITSQVTGQ---IGWRREGIKYR 650
LD G+P +E+ LK I + G+ S T T TGQ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSGVNSITGSSNVGDTLP-TGQLSNIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus].
Length = 418
Score = 149 bits (376), Expect = 6e-36
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPRGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRL 392
>ref|XP_002698754.1| PREDICTED: adaptor-related protein complex 3, mu 2 subunit [Bos
taurus].
Length = 418
Score = 149 bits (376), Expect = 6e-36
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPRGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRL 392
>ref|NP_001178147.2| stonin-2 [Bos taurus].
Length = 897
Score = 75.5 bits (184), Expect = 1e-13
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 42/236 (17%)
Frame = +3
Query: 636 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 812
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 813 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 986
+ D + + I + +C FH CV F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRTVFA 681
Query: 987 DIILPFRVIPLVREVG-----RTKLEVKVVIKSNFKP--SLLAQKIEVRIPTP------- 1124
+ LPF + G ++ L + SN+ P + + + VR P P
Sbjct: 682 EKTLPFTLRTAASIHGAEVEVQSWLRMSAGFSSNWDPLTQVPCENVMVRYPVPSEWVKNF 741
Query: 1125 -----------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRM 1217
+ SG + + G AKY+ + NAIVW+I R+
Sbjct: 742 RRESVLGEKSLKAKVNRGASFGSASISGSEPVMRVTLGTAKYEHAFNAIVWRINRL 797
>ref|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus].
Length = 965
Score = 75.5 bits (184), Expect = 1e-13
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 42/236 (17%)
Frame = +3
Query: 636 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 812
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 813 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 986
+ D + + I + +C FH CV F R I F P D FELMR+RT
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFRTVFA 681
Query: 987 DIILPFRVIPLVREVG-----RTKLEVKVVIKSNFKP--SLLAQKIEVRIPTP------- 1124
+ LPF + G ++ L + SN+ P + + + VR P P
Sbjct: 682 EKTLPFTLRTAASIHGAEVEVQSWLRMSAGFSSNWDPLTQVPCENVMVRYPVPSEWVKNF 741
Query: 1125 -----------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRM 1217
+ SG + + G AKY+ + NAIVW+I R+
Sbjct: 742 RRESVLGEKSLKAKVNRGASFGSASISGSEPVMRVTLGTAKYEHAFNAIVWRINRL 797
>ref|NP_001191780.1| stonin-1 [Bos taurus].
Length = 732
Score = 57.8 bits (138), Expect = 2e-08
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 45/242 (18%)
Frame = +3
Query: 645 YRRNELFLDVLESV-NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 821
Y E+FL+++++ + +G+++ + V ++ +++G EC +ND + ++
Sbjct: 406 YEEQEIFLEIVDNFWGKITKEEGKLVESAVITQISCLCFVNGNTECFLTLNDHELQKRNE 465
Query: 822 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-KDII 995
+ + K G I I D FH+CV+ +F+ R I F+P D FELMR++T+
Sbjct: 466 RYFEKDPEKKG---IDILDYHFHKCVKAQEFEQSRIIKFVPLDACRFELMRFKTSHSGED 522
Query: 996 LPFRVIPLVREVGRTKLEVKVVIKSNFKPSL----------LAQKIEVRIPTP------L 1127
LPF + +V G +E++ + N P + I + P P L
Sbjct: 523 LPFSLKSVVVVQG-AYVELQAFV--NMAPLVQRPSHAGSWRSCDNIMIHFPVPSQWIKAL 579
Query: 1128 NTSGVQ--------------------------VICMKGKAKYKASENAIVWKIKRMAGMK 1229
T +Q + G AKY+++ A+VWKI R+
Sbjct: 580 WTMNLQRQKSLKAKMNRRACLGSLHELESEPVIQVTVGSAKYESAYRAVVWKIDRLPDKN 639
Query: 1230 ES 1235
S
Sbjct: 640 SS 641
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,616,153
Number of extensions: 1488028
Number of successful extensions: 6249
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6220
Number of HSP's successfully gapped: 10
Length of query: 452
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,174,046
Effective search space: 4904219916
Effective search space used: 4904219916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858593.1| PREDICTED: similar to adaptor-related protein c... 793 0.0
Alignment gi|XP_858087.1| PREDICTED: similar to adaptor-related protein c... 793 0.0
Alignment gi|XP_858515.1| PREDICTED: similar to adaptor-related protein c... 788 0.0
Alignment gi|XP_849091.1| PREDICTED: similar to adaptor-related protein c... 788 0.0
Alignment gi|XP_858550.1| PREDICTED: similar to adaptor-related protein c... 786 0.0
Alignment gi|XP_858405.1| PREDICTED: similar to adaptor-related protein c... 783 0.0
Alignment gi|XP_858479.1| PREDICTED: similar to adaptor-related protein c... 780 0.0
Alignment gi|XP_858327.1| PREDICTED: similar to adaptor-related protein c... 780 0.0
Alignment gi|XP_858446.1| PREDICTED: similar to adaptor-related protein c... 766 0.0
Alignment gi|XP_858757.1| PREDICTED: similar to adaptor-related protein c... 763 0.0
>ref|XP_858593.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 21 [Canis familiaris].
Length = 433
Score = 793 bits (2047), Expect = 0.0
Identities = 401/402 (99%), Positives = 401/402 (99%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 689
PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN
Sbjct: 121 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 180
Query: 690 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 869
LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA
Sbjct: 181 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 240
Query: 870 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 1049
IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE
Sbjct: 241 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 300
Query: 1050 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 1229
VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK
Sbjct: 301 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 360
Query: 1230 ESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
ESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 ESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 402
>ref|XP_858087.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 8 [Canis familiaris].
Length = 433
Score = 793 bits (2047), Expect = 0.0
Identities = 401/402 (99%), Positives = 401/402 (99%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 689
PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN
Sbjct: 121 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 180
Query: 690 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 869
LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA
Sbjct: 181 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 240
Query: 870 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 1049
IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE
Sbjct: 241 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 300
Query: 1050 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 1229
VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK
Sbjct: 301 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 360
Query: 1230 ESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
ESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 ESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 402
>ref|XP_858515.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 19 [Canis familiaris].
Length = 435
Score = 788 bits (2034), Expect = 0.0
Identities = 401/404 (99%), Positives = 401/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|XP_849091.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 1 [Canis familiaris].
Length = 435
Score = 788 bits (2034), Expect = 0.0
Identities = 401/404 (99%), Positives = 401/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|XP_858550.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 20 [Canis familiaris].
Length = 440
Score = 786 bits (2029), Expect = 0.0
Identities = 401/409 (98%), Positives = 401/409 (98%), Gaps = 7/409 (1%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ-------TKEEQSQITSQVTGQIGWRREGIKYRRNELFL 668
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFL
Sbjct: 121 PQNSETGALKTFITQQGIKSQVLPCIATTKEEQSQITSQVTGQIGWRREGIKYRRNELFL 180
Query: 669 DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 848
DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK
Sbjct: 181 DVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 240
Query: 849 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE 1028
SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE
Sbjct: 241 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE 300
Query: 1029 VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI 1208
VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI
Sbjct: 301 VGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKI 360
Query: 1209 KRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
KRMAGMKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 KRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 409
>ref|XP_858405.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 16 [Canis familiaris].
Length = 437
Score = 783 bits (2021), Expect = 0.0
Identities = 401/406 (98%), Positives = 401/406 (98%), Gaps = 4/406 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIG--RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 323
MIGGLFIYNHKGEVLISRVYRDDIG RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGNRRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 60
Query: 324 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 503
KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
Sbjct: 61 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 120
Query: 504 GYPQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL 677
GYPQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
Sbjct: 121 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL 180
Query: 678 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 857
ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK
Sbjct: 181 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 240
Query: 858 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 1037
QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR
Sbjct: 241 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 300
Query: 1038 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 1217
TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM
Sbjct: 301 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 360
Query: 1218 AGMKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
AGMKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 AGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 406
>ref|XP_858479.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 18 [Canis familiaris].
Length = 431
Score = 780 bits (2013), Expect = 0.0
Identities = 397/402 (98%), Positives = 398/402 (99%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 689
PQNSETGALKTFITQQGIKSQ+ QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN
Sbjct: 121 PQNSETGALKTFITQQGIKSQSG--QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 178
Query: 690 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 869
LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA
Sbjct: 179 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 238
Query: 870 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 1049
IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE
Sbjct: 239 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 298
Query: 1050 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 1229
VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK
Sbjct: 299 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 358
Query: 1230 ESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
ESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 359 ESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 400
>ref|XP_858327.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 14 [Canis familiaris].
Length = 445
Score = 780 bits (2013), Expect = 0.0
Identities = 401/414 (96%), Positives = 401/414 (96%), Gaps = 12/414 (2%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ-----TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV 674
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV
Sbjct: 121 PQNSETGALKTFITQQGIKSQFSSGPTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDV 180
Query: 675 LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK-- 848
LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK
Sbjct: 181 LESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKRP 240
Query: 849 -----SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 1013
SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI
Sbjct: 241 SAPAHSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 300
Query: 1014 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA 1193
PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA
Sbjct: 301 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENA 360
Query: 1194 IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 IVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 414
>ref|XP_858446.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform b isoform 17 [Canis familiaris].
Length = 429
Score = 766 bits (1977), Expect = 0.0
Identities = 391/402 (97%), Positives = 392/402 (97%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 689
PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN
Sbjct: 121 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 180
Query: 690 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 869
LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK+ A SGKQSIA
Sbjct: 181 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKRPSAPA----HSGKQSIA 236
Query: 870 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 1049
IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE
Sbjct: 237 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 296
Query: 1050 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 1229
VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK
Sbjct: 297 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 356
Query: 1230 ESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
ESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 357 ESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 398
>ref|XP_858757.1| PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit
isoform 25 [Canis familiaris].
Length = 426
Score = 763 bits (1970), Expect = 0.0
Identities = 392/404 (97%), Positives = 392/404 (97%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT QS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT---------QS 231
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 232 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 291
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 292 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 351
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 352 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 395
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,071,516
Number of extensions: 1540744
Number of successful extensions: 6529
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 6415
Number of HSP's successfully gapped: 61
Length of query: 452
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 346
Effective length of database: 15,340,888
Effective search space: 5307947248
Effective search space used: 5307947248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapi... 793 0.0
Alignment gi|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens]. 788 0.0
Alignment gi|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens]. 314 1e-85
Alignment gi|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapie... 311 7e-85
Alignment gi|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sa... 303 3e-82
Alignment gi|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens]. 170 3e-42
Alignment gi|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens]. 152 5e-37
Alignment gi|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens]. 152 5e-37
Alignment gi|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens]. 149 6e-36
Alignment gi|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens]. 149 6e-36
>ref|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapiens].
Length = 433
Score = 793 bits (2047), Expect = 0.0
Identities = 401/402 (99%), Positives = 401/402 (99%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 689
PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN
Sbjct: 121 PQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVN 180
Query: 690 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 869
LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA
Sbjct: 181 LLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIA 240
Query: 870 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 1049
IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE
Sbjct: 241 IDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLE 300
Query: 1050 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 1229
VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK
Sbjct: 301 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMK 360
Query: 1230 ESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
ESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 ESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 402
>ref|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens].
Length = 435
Score = 788 bits (2034), Expect = 0.0
Identities = 401/404 (99%), Positives = 401/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens].
Length = 423
Score = 314 bits (804), Expect = 1e-85
Identities = 154/400 (38%), Positives = 251/400 (62%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ + ++ F ++ ++ +P+ + + F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQQ K +T + S++ VT + WR EGIKY++NE+F+DV+ESVNLL+
Sbjct: 126 TDSKILQEYITQQSNKLETGK--SRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
+ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ ++D
Sbjct: 184 NANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+ V
Sbjct: 236 VKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMV 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
K FK +A +E+ +P P + + G AKY N ++W IK G KE
Sbjct: 296 KAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L ++ RPPI + FE+P F SG++VRY+
Sbjct: 356 MRAHFGLPSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYM 395
>ref|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapiens].
Length = 423
Score = 311 bits (798), Expect = 7e-85
Identities = 160/400 (40%), Positives = 248/400 (62%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+ESVNLL+
Sbjct: 126 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ ++D
Sbjct: 184 SANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E +
Sbjct: 236 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L + K +PPIS+ FE+P F SG++VRYL
Sbjct: 356 MRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 395
>ref|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sapiens].
Length = 435
Score = 303 bits (775), Expect = 3e-82
Identities = 160/412 (38%), Positives = 248/412 (60%), Gaps = 14/412 (3%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLL- 695
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+ESVNLL
Sbjct: 126 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLG 183
Query: 696 -----------MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADET 842
+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G +
Sbjct: 184 KYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--- 240
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLV 1022
+S+ ++D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++
Sbjct: 241 -----KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVI 295
Query: 1023 REVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVW 1202
+ +++E + KS FK A +E+ IP P + + G K+ + IVW
Sbjct: 296 EKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVW 355
Query: 1203 KIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
IK G KE + A L + K +PPIS+ FE+P F SG++VRYL
Sbjct: 356 SIKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 407
>ref|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens].
Length = 453
Score = 170 bits (430), Expect = 3e-42
Identities = 119/433 (27%), Positives = 209/433 (48%), Gaps = 31/433 (7%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVT-NIARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV + F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L T +NV+ + E L ++ ++ Y G + E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ--------------TKEEQSQIT-SQVTGQIGWRREGI 641
Y Q + T L+ FI + + S+ + +QS++ S +
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSD 180
Query: 642 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 821
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E + G+ ++ + K
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-- 238
Query: 822 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 995
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 -----SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
Query: 996 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
LPFR+ P V+ + G +L+V + ++ + A + + +P P + + K
Sbjct: 294 LPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARP----PISMTFEV 1319
+ +E A+ W + R+ G SQ+S ++ P++ A P P S++FE+
Sbjct: 354 AELAEGALRWDLPRVQG--GSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFEL 411
Query: 1320 P-FAPSGLKVRYL 1355
P SGL+VR+L
Sbjct: 412 PRHTCSGLQVRFL 424
>ref|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 152 bits (385), Expect = 5e-37
Identities = 107/422 (25%), Positives = 190/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI--------TQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYR 650
LD G+P +E+ LK I I + + T Q++ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS-NIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 152 bits (385), Expect = 5e-37
Identities = 107/422 (25%), Positives = 190/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI--------TQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYR 650
LD G+P +E+ LK I I + + T Q++ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS-NIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPSLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 149 bits (376), Expect = 6e-36
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRL 392
>ref|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 149 bits (376), Expect = 6e-36
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMS-LQAGASKPDENPTINLQFKIQQLAISGLKVNRL 392
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,936,965
Number of extensions: 1504268
Number of successful extensions: 6043
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6006
Number of HSP's successfully gapped: 16
Length of query: 452
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,802,980
Effective search space: 5121831080
Effective search space used: 5121831080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033809.1| AP-2 complex subunit mu [Mus musculus]. 788 0.0
Alignment gi|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus mus... 319 4e-87
Alignment gi|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus muscul... 318 5e-87
Alignment gi|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus]. 310 1e-84
Alignment gi|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus]. 175 8e-44
Alignment gi|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus]. 152 6e-37
Alignment gi|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus]. 147 2e-35
Alignment gi|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus]. 147 2e-35
Alignment gi|NP_780576.1| stonin-2 [Mus musculus]. 74 2e-13
Alignment gi|NP_084134.2| stonin-1 [Mus musculus]. 69 8e-12
>ref|NP_033809.1| AP-2 complex subunit mu [Mus musculus].
Length = 435
Score = 788 bits (2034), Expect = 0.0
Identities = 401/404 (99%), Positives = 401/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTFITQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus musculus].
Length = 425
Score = 319 bits (817), Expect = 4e-87
Identities = 159/400 (39%), Positives = 253/400 (63%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQQG K +T + S++ VT + WR EGIKY++NE+F+DV+ESVNLL+
Sbjct: 126 TDSKILQEYITQQGNKLETGK--SRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
+ G VL + + G + +K +LSGMPE + G+ND+++ E G S S +S+ ++D
Sbjct: 184 NANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTG------LSGSKNKSVELED 237
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+ V
Sbjct: 238 VKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMV 297
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 298 KAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKEYL 357
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L ++ RPPI + FE+P F SG++VRY+
Sbjct: 358 MRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYM 397
>ref|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus musculus].
Length = 423
Score = 318 bits (816), Expect = 5e-87
Identities = 158/400 (39%), Positives = 253/400 (63%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+FI + KG+ LISR Y+ D+ +D F ++ ++ V +P+ + R F +K SN+
Sbjct: 6 VFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A T +N NA++V+ FLYK +V YF ++ EE+I++NFV++YELLDE++DFG+PQ
Sbjct: 66 YLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQQG K +T + S++ VT + WR EGIKY++NE+F+DV+ESVNLL+
Sbjct: 126 TDSKILQEYITQQGNKLETGK--SRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
+ G VL + + G + +K +LSGMPE + G+ND+++ E G+ S +S+ ++D
Sbjct: 184 NANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKNKSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+FD++R+ISFIPPDG+FELM YR + + + ++ + +++E+ V
Sbjct: 236 VKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMV 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
K FK +A +E+ +P P + + G AKY +N ++W IK G KE
Sbjct: 296 KAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L ++ RPPI + FE+P F SG++VRY+
Sbjct: 356 MRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYM 395
>ref|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus].
Length = 423
Score = 310 bits (795), Expect = 1e-84
Identities = 159/400 (39%), Positives = 248/400 (62%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+E+VNLL+
Sbjct: 126 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ ++D
Sbjct: 184 SANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E V
Sbjct: 236 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMV 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
KS FK A +E+ IP P + + G K+ + IVW +K G KE
Sbjct: 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L + K +PPIS+ FE+P F SG++VRYL
Sbjct: 356 MRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 395
>ref|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus].
Length = 449
Score = 175 bits (443), Expect = 8e-44
Identities = 120/429 (27%), Positives = 206/429 (48%), Gaps = 27/429 (6%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI-ARTSFFHVK 326
MI FI + KG+ LI + +R D G V + SPV F H++
Sbjct: 1 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIR 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
S ++L A T +NV+ + E L ++ ++ Y G ++E I N L+YELLDE+LD+G
Sbjct: 61 HSGLYLVATTLENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYG 120
Query: 507 YPQNSETGALKTFITQQGIKSQ--------------TKEEQSQIT-SQVTGQIGWRREGI 641
Y Q + T L+ FI + + S+ + +Q+++ S +
Sbjct: 121 YVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSD 180
Query: 642 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG 821
+ ++NE+FLDV+E +++L++ G +L V G + +KS+L E G+ ++ + K
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGK-- 238
Query: 822 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI--I 995
+ I +D+ +FH V L +F+S R + PP GE +MRY+ + D+
Sbjct: 239 -----SELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSP 293
Query: 996 LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
LPFR+ P V+ + G +L+V + ++ + P A I + +P P + K
Sbjct: 294 LPFRLFPSVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPRGVISLSQELSSPDQK 353
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIEL-------LPTNDKKKWARPPISMTFEVP-FA 1328
+ E A+ W + R+ G SQ+S ++ LP + P S++FE+P
Sbjct: 354 AELGEGALHWDLPRVQG--GSQLSGLFQMDVPGLQGLPNHGPSPLGLGPASLSFELPRHT 411
Query: 1329 PSGLKVRYL 1355
SGL+VR+L
Sbjct: 412 CSGLQVRFL 420
>ref|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus].
Length = 418
Score = 152 bits (384), Expect = 6e-37
Identities = 107/422 (25%), Positives = 190/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI--------TQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYR 650
LD G+P +E+ LK I I + + T Q++ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS-NIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLAWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 147 bits (370), Expect = 2e-35
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 SISFRDSSSLGRFEITVGPKQTMGKTI--EGVIVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMG-LQVGASKPDENPTINLQFKIQQLAISGLKVNRL 392
>ref|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 147 bits (370), Expect = 2e-35
Identities = 112/417 (26%), Positives = 185/417 (44%), Gaps = 15/417 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR G+KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV---- 1010
+DD +FH CVR +++SER +SFIPPDG F L+ Y + ++ V
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKH 278
Query: 1011 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 1187
I + E+ V K ++ + + V P + + +G +
Sbjct: 279 SISFRDSSSLGRFEITVGPKQTMGKTI--EGVIVTSQMPKGVLNMSLTPSQGTHTFDPVT 336
Query: 1188 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVRYL 1355
+ W + ++ K + + L K P I++ F++ A SGLKV L
Sbjct: 337 KMLSWDVGKINPQKLPSLKGTMG-LQVGASKPDENPTINLQFKIQQLAISGLKVNRL 392
>ref|NP_780576.1| stonin-2 [Mus musculus].
Length = 895
Score = 74.3 bits (181), Expect = 2e-13
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 43/237 (18%)
Frame = +3
Query: 636 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 812
G+ Y E+ +DV + + + Q+L HV R+ + S+LSG+ EC+ G+ND ++
Sbjct: 560 GLNYLEEEITVDVRDEFSGTVGKGDNQILQHHVLTRIHILSFLSGLAECRLGLNDILIKG 619
Query: 813 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 986
+ D + + I + +C FH CV F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRTVFA 679
Query: 987 DIILPFRVIPLVREVGRTKLEVKVVIK------SNFKP--SLLAQKIEVRIPTP------ 1124
+ LPF + + ++EV+ ++ SN P + + + VR P P
Sbjct: 680 EKTLPF-TLRTAASINGAEVEVQSWLRMSPGFSSNRDPLTQVPCENVMVRYPVPSEWVKN 738
Query: 1125 ------------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRM 1217
SG + + G AKY+ + N+IVW+I R+
Sbjct: 739 FRRDSVLGEKSLKAKVNRGASFGSAGASGSEPVMRVTLGTAKYEHAFNSIVWRINRL 795
>ref|NP_084134.2| stonin-1 [Mus musculus].
Length = 730
Score = 68.9 bits (167), Expect = 8e-12
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Frame = +3
Query: 645 YRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK 824
Y E+ LD+ +S+ ++ +GQ++ + V ++ +L+G EC +ND+ E Q +
Sbjct: 405 YEEQEICLDIQDSLWGKVTKEGQLVESAVVTQICCLCFLNGPAECFLALNDR---ELQKR 461
Query: 825 GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTTKDI-IL 998
+ K+ IAI D FH CV+ +F+ R I F+P D FELMR++T+ + L
Sbjct: 462 DECYFEKEPEKKGIAILDYHFHTCVKAEEFEQSRIIKFVPLDACRFELMRFKTSYEAGEL 521
Query: 999 PFRVIPLVREVGRTKLEVKVVIKSNFKPSL----------LAQKIEVRIPTP------LN 1130
PF V +V G +E++ + N P+ I + P P L
Sbjct: 522 PFAVKSVVTVQG-AYVELQAFV--NMTPAAQGSPHAGALRSCNNIMIHFPVPAQWIKALW 578
Query: 1131 TSGVQ--------------------------VICMKGKAKYKASENAIVWKIKRMAGMKE 1232
T +Q + G AKY+++ A+VWKI R+
Sbjct: 579 TRNLQRQKSLKAKMNRRACLGSLQEPESEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNS 638
Query: 1233 S 1235
S
Sbjct: 639 S 639
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,546,726
Number of extensions: 1253831
Number of successful extensions: 4818
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4788
Number of HSP's successfully gapped: 10
Length of query: 452
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 347
Effective length of database: 12,463,779
Effective search space: 4324931313
Effective search space used: 4324931313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230573.1| adaptor-related protein complex 2, mu 1 subu... 784 0.0
Alignment gi|NP_001230846.1| adaptor-related protein complex 1, mu 1 subu... 311 4e-85
Alignment gi|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [S... 152 4e-37
Alignment gi|NP_001230445.1| adaptor-related protein complex 3, mu 1 subu... 152 4e-37
Alignment gi|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus sc... 141 7e-34
Alignment gi|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-lik... 76 4e-14
>ref|NP_001230573.1| adaptor-related protein complex 2, mu 1 subunit [Sus scrofa].
Length = 435
Score = 784 bits (2025), Expect = 0.0
Identities = 399/404 (98%), Positives = 400/404 (99%), Gaps = 2/404 (0%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 329
MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 330 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 509
SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 510 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 683
PQNSETGALKTF TQQGIKSQ TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
Sbjct: 121 PQNSETGALKTFTTQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 684 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 863
VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG+NDKIVIEKQGKGTADETSKSGKQS
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGINDKIVIEKQGKGTADETSKSGKQS 240
Query: 864 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 1043
IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 1044 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 1223
LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
Sbjct: 301 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 360
Query: 1224 MKESQISAEIELLPTNDKKKWARPPISMTFEVPFAPSGLKVRYL 1355
MKESQISAEIELLPTNDKKKWARPPISM FEVPFAPSGLKVRYL
Sbjct: 361 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYL 404
>ref|NP_001230846.1| adaptor-related protein complex 1, mu 1 subunit [Sus scrofa].
Length = 423
Score = 311 bits (798), Expect = 4e-85
Identities = 160/400 (40%), Positives = 248/400 (62%), Gaps = 2/400 (0%)
Frame = +3
Query: 162 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 338
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 6 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 65
Query: 339 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 518
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 125
Query: 519 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 698
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+ESVNLL+
Sbjct: 126 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLV 183
Query: 699 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 878
S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ ++D
Sbjct: 184 SANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVELED 235
Query: 879 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 1058
FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +++E +
Sbjct: 236 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 295
Query: 1059 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 1238
KS FK A +E+ IP P + + G K+ + IVW IK G KE
Sbjct: 296 KAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYL 355
Query: 1239 ISAEIELLPTNDKKKWARPPISMTFEVP-FAPSGLKVRYL 1355
+ A L + K +PPIS+ FE+P F SG++VRYL
Sbjct: 356 MRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYL 395
>ref|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [Sus scrofa].
Length = 418
Score = 152 bits (384), Expect = 4e-37
Identities = 107/422 (25%), Positives = 190/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI--------TQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYR 650
LD G+P +E+ LK I I + + T Q++ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS-NIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|NP_001230445.1| adaptor-related protein complex 3, mu 1 subunit [Sus scrofa].
Length = 418
Score = 152 bits (384), Expect = 4e-37
Identities = 107/422 (25%), Positives = 190/422 (45%), Gaps = 20/422 (4%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS-----PVTNIARTSF 314
MI LF+ N G++ + + ++ + ++ D F A+++ PV +
Sbjct: 1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYF----FEAQEKAADVENVPPVISTPHHYL 56
Query: 315 FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEI 494
+ R ++ +V + V V EFL+++ D YFG+ SE IK+N V++YELL+E+
Sbjct: 57 ISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116
Query: 495 LDFGYPQNSETGALKTFI--------TQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYR 650
LD G+P +E+ LK I I + + T Q++ I WRR G+KY
Sbjct: 117 LDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLS-NIPWRRAGVKYT 175
Query: 651 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKG 827
NE + DV+E ++ ++ G + A + G + LSGMP+ MN ++
Sbjct: 176 NNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------- 227
Query: 828 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 1007
+DD +FH C+R +++SER +SFIPPDG F L+ YR + ++
Sbjct: 228 --------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIP 273
Query: 1008 V-----IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 1172
V I + ++ + K N ++ + I V + P + + +G
Sbjct: 274 VYVKHSISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYT 331
Query: 1173 YKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMTFEV-PFAPSGLKVR 1349
+ + W + ++ K + + L + K P +++ F++ A SGLKV
Sbjct: 332 FDPVTKVLTWDVGKITPQKLPSLKGLVN-LQSGAPKPEENPNLNIQFKIQQLAISGLKVN 390
Query: 1350 YL 1355
L
Sbjct: 391 RL 392
>ref|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus scrofa].
Length = 268
Score = 141 bits (356), Expect = 7e-34
Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 9/287 (3%)
Frame = +3
Query: 150 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVK 326
MI LF+ N G++ + + ++ + R+ D F A + PV V
Sbjct: 1 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY 60
Query: 327 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 506
R I+ AV + V V EFL+++ D YFG SE IK+N V++YE+L+E+LD G
Sbjct: 61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG 120
Query: 507 YPQNSETGALKTFITQQGIKS---QTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF 665
+P +E+ LK I I T + + Q+ TGQ+ WRR +KY NE +
Sbjct: 121 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTRVKYTNNEAY 180
Query: 666 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET 842
DV+E ++ ++ G ++A + G + L+GMP+ MN ++
Sbjct: 181 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL------------- 227
Query: 843 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTT 983
+DD +FH CVR +++SER +SFIPPDG F L+ Y +
Sbjct: 228 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-like [Sus scrofa].
Length = 895
Score = 76.3 bits (186), Expect = 4e-14
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 43/237 (18%)
Frame = +3
Query: 636 GIKYRRNELFLDVLESVNLLMSP-QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 812
G+ Y E+ +DV + + L+S Q+L V R+ + S+LSG+ EC+ G+ND +V
Sbjct: 560 GLNYLEEEITVDVRDEFSGLVSKGDNQILQHCVLTRIHILSFLSGLAECRLGLNDVLVKG 619
Query: 813 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDG-EFELMRYRTT-K 986
+ D + + I + +C FH CV F+S R I F P D FELMR+RT
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFRTVFA 679
Query: 987 DIILPFRVIPLVREVGRTKLEVKVVIK------SNFKP--SLLAQKIEVRIPTP------ 1124
+ LPF + V + ++EV+ ++ SN P + + + VR P P
Sbjct: 680 EKTLPF-TLRTVASINGAEVEVQSWLRMSTGFSSNCDPLTQVPCENVMVRYPVPSEWVKN 738
Query: 1125 ------------------------LNTSGVQVI--CMKGKAKYKASENAIVWKIKRM 1217
+ SG + + G AKY+ + N+IVW+I R+
Sbjct: 739 FRRESVLGEKSLKAKVNRGASFGSTSVSGSEPVMRVTLGTAKYEHAFNSIVWRITRL 795
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,938,437
Number of extensions: 956264
Number of successful extensions: 4025
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4007
Number of HSP's successfully gapped: 6
Length of query: 452
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 350
Effective length of database: 8,804,438
Effective search space: 3081553300
Effective search space used: 3081553300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007204
(1357 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 529 e-147
>Sscrofa_Chr13
|| Length = 218635234
Score = 529 bits (267), Expect = e-147
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 223 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538220 ggaggaacgcagtggacgcctttcgggtcaatgttatccacgcccggcagcaggtgcgca 131538279
Query: 283 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538280 gccccgtcaccaacatcgctcgcaccagtttcttccatgttaagcggtccaacatctggc 131538339
Query: 343 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538340 tggcagctgtcaccaagcagaatgtcaatgctgccatggtcttcgaattcctctataaga 131538399
Query: 403 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131538400 tgtgtgacgtaatggctgcctactttgggaagatcagcgaagagaacatcaagaacaatt 131538459
Query: 463 ttgtgctcatatatgagttgcttgatg 489
|||||||||||||||||||||||||||
Sbjct: 131538460 ttgtgctcatatatgagttgcttgatg 131538486
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 969 aggtatcgcaccaccaaggacatcatccttcccttccgagtgatcccgctagttcgggaa 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540967 aggtatcgcaccaccaaggacatcatccttcccttccgagtgatcccgctagttcgggaa 131541026
Query: 1029 gtggggcgcaccaagctggaggtcaaggtggtcattaagtccaacttcaagccctcacta 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541027 gtggggcgcaccaagctggaggtcaaggtggtcattaagtccaacttcaagccctcacta 131541086
Query: 1089 ctggctcagaagattgaggtgaggat 1114
||||||||||||||||||||||||||
Sbjct: 131541087 ctggctcagaagattgaggtgaggat 131541112
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 708 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540094 gggcaggtgctgagcgcccatgtgtccggccgagtggtgatgaagagctacctgagtggc 131540153
Query: 768 atgcctgagtgcaagtttgggatgaatgacaagattgtcattgagaagcagggcaaaggc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540154 atgcctgagtgcaagtttgggatgaatgacaagattgtcattgagaagcagggcaaaggc 131540213
Query: 828 acagccgatgaaacaagcaagag 850
|||||||||||||||||||||||
Sbjct: 131540214 acagccgatgaaacaagcaagag 131540236
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 570 cagacgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcgg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539867 cagacgaaagaagagcagtcccaaatcaccagccaggtgacagggcagattggctggcgg 131539926
Query: 630 cgggaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539927 cgggaaggcatcaagtatcgccgaaacgagctcttcctggatgtgctggagagtgtgaac 131539986
Query: 690 ctcctcatgtccccacaggg 709
||||||||||||||||||||
Sbjct: 131539987 ctcctcatgtccccacaggg 131540006
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 849 agcgggaagcaatcaattgccattgatgactgcaccttccaccagtgtgttcgactcagc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540743 agcgggaagcaatcaattgccattgatgactgcaccttccaccagtgtgttcgactcagc 131540802
Query: 909 aagtttgactctgaacgcagcatcagcttcatcccaccagatggagaatttgagctcatg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131540803 aagtttgactctgaacgcagcatcagcttcatcccaccagatggagaatttgagctcatg 131540862
Query: 969 aggt 972
||||
Sbjct: 131540863 aggt 131540866
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 105 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536253 aggtctgttctcagagcgatgggctgccaggactgagctgccgccatgattggaggctta 131536312
Query: 165 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131536313 ttcatctataatcacaagggggaggtgctcatctcccgggtctaccgagatgacatcggg 131536372
Score = 218 bits (110), Expect = 6e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 1205 gatcaagcgcatggcaggcatgaaggaatcacagatcagcgctgagattgagcttctgcc 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541803 gatcaagcgcatggcaggcatgaaggaatcacagatcagcgctgagattgagcttctgcc 131541862
Query: 1265 caccaatgacaagaagaaatgggctcgaccccccatttcgatgacctttgaggt 1318
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 131541863 caccaatgacaagaagaaatgggctcgaccccccatttcgatgaactttgaggt 131541916
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534171 tactgcagtgaaagccgaggcagcgggcaggcgagcagggggcgggcggacatcttggga 131534230
Query: 61 tccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131534231 tccggagagtggccggcccggcagagcaggcggcctcggacaccaggt 131534278
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1105 aggtgaggatcccaaccccactgaacaccagcggggtgcaggtgatctgcatgaagggga 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541206 aggtgaggatcccaaccccactgaacaccagcggggtgcaggtgatctgcatgaagggga 131541265
Query: 1165 aggctaagtacaaggccagcgagaacgccatcgtgtggaag 1205
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 131541266 aggctaagtacaaggccagcgagaacgccatcgtgtggaag 131541306
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 489 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131539185 gagatcctggactttggctacccgcagaactcagagacgggcgcgctaaaaaccttcatc 131539244
Query: 549 acccagcagggcatcaaaagccag 572
||||||||||||||||||||||||
Sbjct: 131539245 acccagcagggcatcaaaagccag 131539268
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1315 aggtgccattcgcgccttctggcctcaaggtgcgctacttgaa 1357
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131542567 aggtgccattcgcgccttctggcctcaaggtgcgctacttgaa 131542609
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,713,507
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 11
Length of query: 1357
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1336
Effective length of database: 2,808,413,156
Effective search space: 3752039976416
Effective search space used: 3752039976416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)