Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776857.1| thioredoxin-dependent peroxide reductase, mitoc... 456 e-128
Alignment gi|NP_777188.1| peroxiredoxin-2 [Bos taurus]. 280 1e-75
Alignment gi|NP_776858.1| peroxiredoxin-4 [Bos taurus]. 274 8e-74
Alignment gi|NP_776856.1| peroxiredoxin-1 [Bos taurus]. 262 3e-70
Alignment gi|NP_777068.1| peroxiredoxin-6 [Bos taurus]. 65 1e-10
Alignment gi|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus]. 59 5e-09
Alignment gi|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [B... 59 7e-09
>ref|NP_776857.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Bos taurus].
Length = 257
Score = 456 bits (1173), Expect = e-128
Identities = 220/251 (87%), Positives = 232/251 (92%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RL RAS+IRHVSA+PWGI CLT+ LWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RLFRASLIRHVSAIPWGISASAALRPAASRRMCLTNALWSGSDQAKFAFSTSSSYHAPAV 66
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVV+GEFKE+SLDD+KGKYLVLFFYPLDFTFVCPTEIIAFSDKA+EFHDV
Sbjct: 67 TQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV 126
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG
Sbjct: 127 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 186
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE HGEVCPANWTP+SPTIKPHPT
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVCPANWTPESPTIKPHPT 246
Query: 793 DSKEYFEKVHQ 825
S+EYFEKV+Q
Sbjct: 247 ASREYFEKVNQ 257
>ref|NP_777188.1| peroxiredoxin-2 [Bos taurus].
Length = 199
Score = 280 bits (717), Expect = 1e-75
Identities = 130/189 (68%), Positives = 158/189 (83%)
Frame = +1
Query: 250 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 429
V + AP F+ TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEI+AFSD+A EFH
Sbjct: 9 VGKPAPEFQATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAEFHK 68
Query: 430 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 609
+NCEV+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+T+++S DYGVL E G+A R
Sbjct: 69 LNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAYR 128
Query: 610 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 789
GLF+ID GV++ +++NDLPVGRSV+E LRLV+AFQ+ + HGEVCPA WTP S TIKP+
Sbjct: 129 GLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWTPGSDTIKPNV 188
Query: 790 TDSKEYFEK 816
DSKEYF K
Sbjct: 189 DDSKEYFSK 197
>ref|NP_776858.1| peroxiredoxin-4 [Bos taurus].
Length = 274
Score = 274 bits (701), Expect = 8e-74
Identities = 130/207 (62%), Positives = 163/207 (78%), Gaps = 1/207 (0%)
Frame = +1
Query: 205 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 381
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 68 SRVSVAEHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 127
Query: 382 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 561
PTEIIAF D+ +EF +N EVVA SVDS F+HLAWINTPR+ GGLG +NI LL+DL QI
Sbjct: 128 PTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQI 187
Query: 562 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 741
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 742 CPANWTPDSPTIKPHPTDSKEYFEKVH 822
CPA W P S TI P P +YF+K++
Sbjct: 248 CPAGWKPGSETIIPDPAGKLKYFDKLN 274
>ref|NP_776856.1| peroxiredoxin-1 [Bos taurus].
Length = 199
Score = 262 bits (670), Expect = 3e-70
Identities = 123/190 (64%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF
Sbjct: 8 IGHRAPQFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 427 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 606
+NC+V+ SVDSHF HLAWINTP+K GGLG MNI L+S + I++DYGVL G++
Sbjct: 68 KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISAPKRTIAQDYGVLKADEGISF 127
Query: 607 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPH 786
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP
Sbjct: 128 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 187
Query: 787 PTDSKEYFEK 816
SKEYF K
Sbjct: 188 VQKSKEYFSK 197
>ref|NP_777068.1| peroxiredoxin-6 [Bos taurus].
Length = 224
Score = 64.7 bits (156), Expect = 1e-10
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 13/198 (6%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + DY G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
+++A+S+DS HLAW IN + ++ D + ++ G+L +G
Sbjct: 67 KMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKG 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 768
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 769 PTIKP--HPTDSKEYFEK 816
+ P ++K+ F K
Sbjct: 187 VMVLPTIPEEEAKKLFPK 204
>ref|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus].
Length = 224
Score = 59.3 bits (142), Expect = 5e-09
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + DY G + +L +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTPIG----RIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
++A+S+DS HLAW IN G + ++ D + ++ G+L +
Sbjct: 67 MMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDKKD 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 768
R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPETSRVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 769 PTIKP--HPTDSKEYFEK 816
+ P ++K+ F K
Sbjct: 187 VMVLPTVPEEEAKKLFPK 204
>ref|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [Bos taurus].
Length = 224
Score = 58.9 bits (141), Expect = 7e-09
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + DY G + +L +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTPIG----RIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
++A+S+DS HLAW IN G + ++ D + ++ G+L +
Sbjct: 67 MMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDKKD 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 768
R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPETSRVVFIFGPDKKLKLSILYPANTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 769 PTIKP--HPTDSKEYFEK 816
+ P ++K+ F K
Sbjct: 187 VMVLPTVPEEEAKKLFPK 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,440,718
Number of extensions: 1227634
Number of successful extensions: 3743
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3737
Number of HSP's successfully gapped: 7
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent per... 459 e-129
Alignment gi|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent per... 445 e-125
Alignment gi|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent per... 437 e-123
Alignment gi|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent per... 422 e-118
Alignment gi|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) ... 278 8e-75
Alignment gi|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3... 273 2e-73
Alignment gi|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 270 2e-72
Alignment gi|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 270 2e-72
Alignment gi|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis fa... 266 2e-71
Alignment gi|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1... 251 8e-67
>ref|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 1 [Canis familiaris].
Length = 257
Score = 459 bits (1180), Expect = e-129
Identities = 219/251 (87%), Positives = 233/251 (92%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
R LRAS+ RHVSA+PWGI TCLT+VLWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RFLRASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFAFSTSSSYHAPAV 66
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NC+VVAVSVDSHF+HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG+ALRG
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGIALRG 186
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 246
Query: 793 DSKEYFEKVHQ 825
SKEYFEKV+Q
Sbjct: 247 ASKEYFEKVNQ 257
>ref|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 257
Score = 445 bits (1145), Expect = e-125
Identities = 213/251 (84%), Positives = 230/251 (91%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RLL AS+ RHVSA+PWGI TCLT+VLWSGSSQAKFAFSTSSS+H+PAV
Sbjct: 7 RLLWASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSSQAKFAFSTSSSYHAPAV 66
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTA+VNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAIVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NC+VVAVSVDSHF+HLAWINTP+KNG LGHMNIALLSDLTKQI RDYG+LLEGPG+ALRG
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPQKNGSLGHMNIALLSDLTKQIPRDYGMLLEGPGIALRG 186
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETL LVKAFQFVETHGEVCPANWTPDSPTIKPH T
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLCLVKAFQFVETHGEVCPANWTPDSPTIKPHTT 246
Query: 793 DSKEYFEKVHQ 825
SKEYFEKV+Q
Sbjct: 247 ASKEYFEKVNQ 257
>ref|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 2 [Canis familiaris].
Length = 260
Score = 437 bits (1124), Expect = e-123
Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 3/254 (1%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
R LRAS+ RHVSA+PWGI TCLT+VLWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RFLRASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFAFSTSSSYHAPAV 66
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG---PGLA 603
NC+VVAVSVDSHF+HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL G G
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLSAGFVLQGSP 186
Query: 604 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP 783
GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP
Sbjct: 187 SLGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP 246
Query: 784 HPTDSKEYFEKVHQ 825
HPT SKEYFEKV+Q
Sbjct: 247 HPTASKEYFEKVNQ 260
>ref|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 269
Score = 422 bits (1084), Expect = e-118
Identities = 203/251 (80%), Positives = 221/251 (88%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
R L+AS+ HVSA+PWGI TCLT+VLWSGS QAKF FSTSSS+H+PAV
Sbjct: 19 RFLQASIAGHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFTFSTSSSYHAPAV 78
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVN EFK+L+LDD+KG+YLVLFFYPL FTFVCPTEI+AFSDKA EFHDV
Sbjct: 79 TQHAPYFKGTAVVNREFKDLTLDDFKGRYLVLFFYPLHFTFVCPTEIVAFSDKAKEFHDV 138
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NC+VVAVSVDSHF+HLAWIN +KNG LGHMNIALLSDLTKQISR+YGVLLEGPG+ALRG
Sbjct: 139 NCDVVAVSVDSHFTHLAWINALQKNGSLGHMNIALLSDLTKQISREYGVLLEGPGIALRG 198
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFI DPNGVIKHLSVNDLPVGRSVEETL LVKAF FVETHGEVCPANWTPDSP IKP P+
Sbjct: 199 LFITDPNGVIKHLSVNDLPVGRSVEETLCLVKAFHFVETHGEVCPANWTPDSPIIKPDPS 258
Query: 793 DSKEYFEKVHQ 825
SKEYFEKV+Q
Sbjct: 259 ASKEYFEKVNQ 269
>ref|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) (Thioredoxin
peroxidase AO372) (Thioredoxin-dependent peroxide
reductase A0372) (Antioxidant enzyme AOE372) (AOE37-2)
isoform 1 [Canis familiaris].
Length = 272
Score = 278 bits (710), Expect = 8e-75
Identities = 132/199 (66%), Positives = 159/199 (79%), Gaps = 1/199 (0%)
Frame = +1
Query: 229 SSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFS 405
S HHS A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVCPTEIIAF
Sbjct: 74 SLHHSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 133
Query: 406 DKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLL 585
D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QIS+DYGV L
Sbjct: 134 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYL 193
Query: 586 EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPD 765
E G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEVCPA W P
Sbjct: 194 EDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPG 253
Query: 766 SPTIKPHPTDSKEYFEKVH 822
S TI P P +YF+K++
Sbjct: 254 SETIIPDPAGKLKYFDKLN 272
>ref|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3 [Canis familiaris].
Length = 257
Score = 273 bits (698), Expect = 2e-73
Identities = 128/191 (67%), Positives = 154/191 (80%)
Frame = +1
Query: 250 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 429
V++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVCPTEIIAF D+ EF
Sbjct: 67 VSKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 126
Query: 430 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 609
+N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QIS+DYGV LE G LR
Sbjct: 127 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYLEDSGHTLR 186
Query: 610 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 789
GLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEVCPA W P S TI P P
Sbjct: 187 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGSETIIPDP 246
Query: 790 TDSKEYFEKVH 822
+YF+K++
Sbjct: 247 AGKLKYFDKLN 257
>ref|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 2 [Canis familiaris].
Length = 198
Score = 270 bits (689), Expect = 2e-72
Identities = 130/198 (65%), Positives = 156/198 (78%)
Frame = +1
Query: 223 TSSSHHSPAVTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAF 402
TS H + + AP F+ TAVV+G FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAF
Sbjct: 2 TSGKAH---IGKPAPPFQATAVVDGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAF 58
Query: 403 SDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 582
S+ A +F + CEV+ VSVDS F+HLAWINTPRK GGLG +NI L++D+T+ +S DYGVL
Sbjct: 59 SEHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVL 118
Query: 583 LEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP 762
E G+A RGLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P
Sbjct: 119 KEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKP 178
Query: 763 DSPTIKPHPTDSKEYFEK 816
S TIKP+ DSKEYF K
Sbjct: 179 GSDTIKPNVDDSKEYFSK 196
>ref|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 1 [Canis familiaris].
Length = 198
Score = 270 bits (689), Expect = 2e-72
Identities = 130/198 (65%), Positives = 156/198 (78%)
Frame = +1
Query: 223 TSSSHHSPAVTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAF 402
TS H + + AP F+ TAVV+G FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAF
Sbjct: 2 TSGKAH---IGKPAPPFQATAVVDGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAF 58
Query: 403 SDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 582
S+ A +F + CEV+ VSVDS F+HLAWINTPRK GGLG +NI L++D+T+ +S DYGVL
Sbjct: 59 SEHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVL 118
Query: 583 LEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP 762
E G+A RGLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P
Sbjct: 119 KEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKP 178
Query: 763 DSPTIKPHPTDSKEYFEK 816
S TIKP+ DSKEYF K
Sbjct: 179 GSDTIKPNVDDSKEYFSK 196
>ref|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis familiaris].
Length = 199
Score = 266 bits (680), Expect = 2e-71
Identities = 126/186 (67%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK+LSL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1 [Canis familiaris].
Length = 199
Score = 251 bits (641), Expect = 8e-67
Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 1/185 (0%)
Frame = +1
Query: 265 PYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 441
P FK TAV+ +G FK+LSL DYKGKY+VLFFYPLDFTFVCPTEIIAFSD+A EF +NC+
Sbjct: 13 PNFKATAVMPDGRFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQ 72
Query: 442 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 621
V+ SVDSHFSHLAWINTP+K GGLG MNI L+SD I++DY VL ++LRGLF+
Sbjct: 73 VIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKHTIAQDYEVLKADESISLRGLFV 132
Query: 622 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 801
ID G++ ++VNDLPVG SV+E+LRLV+AF F + HGEVC A W P S TIKP SK
Sbjct: 133 IDDKGILWQITVNDLPVGHSVDESLRLVQAFPFTDKHGEVCSAGWKPGSDTIKPDVQKSK 192
Query: 802 EYFEK 816
EYF K
Sbjct: 193 EYFSK 197
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,166,554
Number of extensions: 1245214
Number of successful extensions: 3826
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 15
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006784.1| thioredoxin-dependent peroxide reductase, mitoc... 439 e-123
Alignment gi|NP_054817.2| thioredoxin-dependent peroxide reductase, mitoc... 403 e-112
Alignment gi|NP_006397.1| peroxiredoxin-4 [Homo sapiens]. 272 3e-73
Alignment gi|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens]. 271 1e-72
Alignment gi|NP_001189360.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_002565.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859047.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859048.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens]. 121 1e-27
Alignment gi|NP_004896.1| peroxiredoxin-6 [Homo sapiens]. 64 2e-10
>ref|NP_006784.1| thioredoxin-dependent peroxide reductase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 256
Score = 439 bits (1128), Expect = e-123
Identities = 218/251 (86%), Positives = 228/251 (90%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RLLRASV RHVSA+PWGI T LT++L SGSSQAK FSTSSS H+PAV
Sbjct: 7 RLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQAKL-FSTSSSCHAPAV 65
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVNGEFK+LSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 66 TQHAPYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 125
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG GLALRG
Sbjct: 126 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRG 185
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ+VETHGEVCPANWTPDSPTIKP P
Sbjct: 186 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPSPA 245
Query: 793 DSKEYFEKVHQ 825
SKEYF+KV+Q
Sbjct: 246 ASKEYFQKVNQ 256
>ref|NP_054817.2| thioredoxin-dependent peroxide reductase, mitochondrial isoform b
[Homo sapiens].
Length = 238
Score = 403 bits (1035), Expect = e-112
Identities = 203/251 (80%), Positives = 212/251 (84%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RLLRASV RHVSA+PWGI T LT++L SGSSQA
Sbjct: 7 RLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQA--------------- 51
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
PYFKGTAVVNGEFK+LSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 52 ----PYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 107
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG GLALRG
Sbjct: 108 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRG 167
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ+VETHGEVCPANWTPDSPTIKP P
Sbjct: 168 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPSPA 227
Query: 793 DSKEYFEKVHQ 825
SKEYF+KV+Q
Sbjct: 228 ASKEYFQKVNQ 238
>ref|NP_006397.1| peroxiredoxin-4 [Homo sapiens].
Length = 271
Score = 272 bits (696), Expect = 3e-73
Identities = 130/207 (62%), Positives = 162/207 (78%), Gaps = 1/207 (0%)
Frame = +1
Query: 205 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 381
++ + + S H S A +++ APY++GTAV++GEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 65 SRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVC 124
Query: 382 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 561
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QI
Sbjct: 125 PTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI 184
Query: 562 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 741
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 185 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 244
Query: 742 CPANWTPDSPTIKPHPTDSKEYFEKVH 822
CPA W P S TI P P +YF+K++
Sbjct: 245 CPAGWKPGSETIIPDPAGKLKYFDKLN 271
>ref|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens].
Length = 198
Score = 271 bits (692), Expect = 1e-72
Identities = 127/185 (68%), Positives = 152/185 (82%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 441
AP FK TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEIIAFS++A +F + CE
Sbjct: 12 APDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCE 71
Query: 442 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 621
V+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+T+++S DYGVL G+A RGLFI
Sbjct: 72 VLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFI 131
Query: 622 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 801
ID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+ DSK
Sbjct: 132 IDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK 191
Query: 802 EYFEK 816
EYF K
Sbjct: 192 EYFSK 196
>ref|NP_001189360.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_002565.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859047.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859048.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens].
Length = 142
Score = 121 bits (303), Expect = 1e-27
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 441
AP FK TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEIIAFS++A +F + CE
Sbjct: 12 APDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCE 71
Query: 442 VVAVSVDSHFSHLAW 486
V+ VSVDS F+HLAW
Sbjct: 72 VLGVSVDSQFTHLAW 86
>ref|NP_004896.1| peroxiredoxin-6 [Homo sapiens].
Length = 224
Score = 64.3 bits (155), Expect = 2e-10
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ V + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
+++A+S+DS HLAW IN + ++ D ++++ G+L +G
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKG 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 771
+ R +F+ P+ +K + GR+ +E LR+V + Q P +W D
Sbjct: 127 MPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW-KDGD 185
Query: 772 TIKPHPTDSKEYFEKV 819
++ PT +E +K+
Sbjct: 186 SVMVLPTIPEEEAKKL 201
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,460,987
Number of extensions: 1237308
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3920
Number of HSP's successfully gapped: 10
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031478.1| thioredoxin-dependent peroxide reductase, mitoc... 433 e-122
Alignment gi|NP_058044.1| peroxiredoxin-4 [Mus musculus]. 272 3e-73
Alignment gi|NP_035693.3| peroxiredoxin-2 [Mus musculus]. 269 3e-72
Alignment gi|NP_035164.1| peroxiredoxin-1 [Mus musculus]. 261 5e-70
Alignment gi|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculu... 252 4e-67
Alignment gi|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus muscul... 67 2e-11
Alignment gi|NP_031479.1| peroxiredoxin-6 [Mus musculus]. 62 1e-09
Alignment gi|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mu... 58 1e-08
>ref|NP_031478.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Mus musculus].
Length = 257
Score = 433 bits (1114), Expect = e-122
Identities = 211/251 (84%), Positives = 222/251 (88%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RLL +SV RH SA+ I TCLT +LWS S+Q K AFSTSSS H+PAV
Sbjct: 7 RLLWSSVARHASAISRSISASTVLRPVASRRTCLTDILWSASAQGKSAFSTSSSFHTPAV 66
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVNGEFKELSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 126
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNI LLSD+TKQISRDYGVLLE G+ALRG
Sbjct: 127 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRG 186
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGV+KHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP+SPTIKP PT
Sbjct: 187 LFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIKPSPT 246
Query: 793 DSKEYFEKVHQ 825
SKEYFEKVHQ
Sbjct: 247 ASKEYFEKVHQ 257
>ref|NP_058044.1| peroxiredoxin-4 [Mus musculus].
Length = 274
Score = 272 bits (696), Expect = 3e-73
Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%)
Frame = +1
Query: 205 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 381
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 68 SRVSVADHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 127
Query: 382 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 561
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDL QI
Sbjct: 128 PTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQI 187
Query: 562 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 741
S+DYGV LE G LRGLFIID GV++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 742 CPANWTPDSPTIKPHPTDSKEYFEKVH 822
CPA W P S TI P P +YF+K++
Sbjct: 248 CPAGWKPGSETIIPDPAGKLKYFDKLN 274
>ref|NP_035693.3| peroxiredoxin-2 [Mus musculus].
Length = 198
Score = 269 bits (687), Expect = 3e-72
Identities = 126/189 (66%), Positives = 152/189 (80%)
Frame = +1
Query: 250 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 429
+ + AP F TAVV+G FKE+ L DY+GKY+VLFFYPLDFTFVCPTEIIAFSD A +F
Sbjct: 8 IGKSAPDFTATAVVDGAFKEIKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSDHAEDFRK 67
Query: 430 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 609
+ CEV+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+TK +S++YGVL G+A R
Sbjct: 68 LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYR 127
Query: 610 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 789
GLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+
Sbjct: 128 GLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNV 187
Query: 790 TDSKEYFEK 816
DSKEYF K
Sbjct: 188 DDSKEYFSK 196
>ref|NP_035164.1| peroxiredoxin-1 [Mus musculus].
Length = 199
Score = 261 bits (668), Expect = 5e-70
Identities = 121/186 (65%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 262 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP FK TAV+ +G+FK++SL +YKGKY+V FFYPLDFTFVCPTEIIAFSD+A+EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNC 71
Query: 439 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 618
+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 619 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 798
IID G+++ +++NDLPVGRSV+E +RLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKS 191
Query: 799 KEYFEK 816
KEYF K
Sbjct: 192 KEYFSK 197
>ref|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculus].
Length = 198
Score = 252 bits (643), Expect = 4e-67
Identities = 120/189 (63%), Positives = 145/189 (76%)
Frame = +1
Query: 250 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 429
+ + P F TAVV+G FKE+ L DY+GKY+VLFFYPLD TFVCPTEIIAFSD A +F
Sbjct: 8 IGKSTPDFTATAVVDGTFKEIKLSDYRGKYMVLFFYPLDITFVCPTEIIAFSDHAEDFRK 67
Query: 430 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 609
+ CEV+ VSVDS F+H AWINT RK GGLG +NI LL+D+TK +S++YGVL G+A R
Sbjct: 68 LGCEVLGVSVDSQFTHQAWINTSRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYR 127
Query: 610 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 789
GLFIID GV++ ++VNDLPVGRSV E LRLV+AFQ+ + HGEV PA W P S TIKP+
Sbjct: 128 GLFIIDAKGVLRQITVNDLPVGRSVHEALRLVQAFQYTDEHGEVSPAGWKPGSDTIKPNV 187
Query: 790 TDSKEYFEK 816
SKEYF K
Sbjct: 188 DYSKEYFSK 196
>ref|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus musculus].
Length = 224
Score = 67.0 bits (162), Expect = 2e-11
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Frame = +1
Query: 256 QHAPYFKGTAVVNGEFKELSLDDYKGK-YLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
+ AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF
Sbjct: 9 EEAPDFEANTTIG----RIRFHDFLGNSWGMLFSHPKDFTPVCTTELGRAAKLAPEFAKR 64
Query: 433 NCEVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------L 585
N +++A+SVDS HLAW IN + ++ D + IS + +L
Sbjct: 65 NVKLIALSVDSVEDHLAWSKDINAYNGATPKEKLPFPIIDDKDRDISILFCMLDPVEKDA 124
Query: 586 EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW 756
L RG+FI P+ +K + GR+ +E LR++ + Q ET P +W
Sbjct: 125 NSMPLTARGVFIFGPDKKLKMSLLYPNSTGRNFDEILRVIDSLQLTETKPVATPVDW 181
>ref|NP_031479.1| peroxiredoxin-6 [Mus musculus].
Length = 224
Score = 61.6 bits (148), Expect = 1e-09
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
+++A+S+DS HLAW IN + ++ D + ++ G+L
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDANN 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 771
+ R +FI P+ +K + GR+ +E LR+V + Q T P +W
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVDW-KKGE 185
Query: 772 TIKPHPTDSKE 804
++ PT S+E
Sbjct: 186 SVMVVPTLSEE 196
>ref|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mus musculus].
Length = 244
Score = 58.2 bits (139), Expect = 1e-08
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 31 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 86
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
+++A+S+DS HLAW IN + ++ D + ++ G+L
Sbjct: 87 KLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDDNN 146
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 771
+ R +FI P+ +K + R+ +E LR+V + Q T P +W
Sbjct: 147 MPVTARVVFIFGPDKKLKLSILYPATTSRNFDEILRVVDSLQLTGTKPVATPVDW-KKGE 205
Query: 772 TIKPHPTDSKE 804
++ PT S+E
Sbjct: 206 SVMVVPTLSEE 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,874,148
Number of extensions: 1040435
Number of successful extensions: 3196
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3190
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide re... 486 e-137
Alignment gi|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa]. 278 4e-75
Alignment gi|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa]. 273 2e-73
Alignment gi|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [S... 248 4e-66
Alignment gi|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [S... 243 1e-64
Alignment gi|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [S... 243 1e-64
Alignment gi|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [S... 243 1e-64
Alignment gi|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [S... 243 1e-64
Alignment gi|NP_999573.1| peroxiredoxin-6 [Sus scrofa]. 64 1e-10
>ref|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial
isoform 1 [Sus scrofa].
Length = 261
Score = 486 bits (1250), Expect = e-137
Identities = 238/251 (94%), Positives = 238/251 (94%)
Frame = +1
Query: 73 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 252
RLLRASVIRHVSAVPWGI TCLTSVLWSGSSQAKFAFSTSSSHHSPAV
Sbjct: 11 RLLRASVIRHVSAVPWGISASAALRPAPSRRTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 70
Query: 253 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 432
TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV
Sbjct: 71 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 130
Query: 433 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 612
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG
Sbjct: 131 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 190
Query: 613 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 792
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT
Sbjct: 191 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 250
Query: 793 DSKEYFEKVHQ 825
DSKEYFEKVHQ
Sbjct: 251 DSKEYFEKVHQ 261
>ref|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa].
Length = 198
Score = 278 bits (711), Expect = 4e-75
Identities = 131/185 (70%), Positives = 152/185 (82%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 441
AP F+ TAVVNG FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAFSD+A EFH + CE
Sbjct: 12 APEFQATAVVNGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCE 71
Query: 442 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 621
V+ VSVDS F+HLAWINTPRK GGLG + I LL+D+T+ +S DYGVL E G+A RGLFI
Sbjct: 72 VLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFI 131
Query: 622 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 801
ID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+ DSK
Sbjct: 132 IDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK 191
Query: 802 EYFEK 816
EYF K
Sbjct: 192 EYFSK 196
>ref|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa].
Length = 272
Score = 273 bits (697), Expect = 2e-73
Identities = 130/207 (62%), Positives = 161/207 (77%), Gaps = 1/207 (0%)
Frame = +1
Query: 205 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 381
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 66 SRLSVADHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 125
Query: 382 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 561
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDL QI
Sbjct: 126 PTEIIAFGDRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQI 185
Query: 562 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 741
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 186 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 245
Query: 742 CPANWTPDSPTIKPHPTDSKEYFEKVH 822
CPA W P S TI P P +YF+K++
Sbjct: 246 CPAGWKPGSETIIPDPAGKLKYFDKLN 272
>ref|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [Sus scrofa].
Length = 197
Score = 248 bits (633), Expect = 4e-66
Identities = 117/190 (61%), Positives = 148/190 (77%), Gaps = 1/190 (0%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 427 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 606
+NC+V+ SVD + + WINTP+K GGLG MNI L+SD + I++DYGVL G++
Sbjct: 68 KLNCQVIGASVD--LTSVIWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISF 125
Query: 607 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPH 786
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP
Sbjct: 126 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 185
Query: 787 PTDSKEYFEK 816
SKEYF K
Sbjct: 186 VQKSKEYFSK 195
>ref|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 427 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 597
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 598 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 777
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 778 KPHPTDSKEYFEK 816
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 427 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 597
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 598 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 777
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 778 KPHPTDSKEYFEK 816
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 427 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 597
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 598 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 777
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 778 KPHPTDSKEYFEK 816
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 250 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 426
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 427 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 597
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 598 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 777
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 778 KPHPTDSKEYFEK 816
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|NP_999573.1| peroxiredoxin-6 [Sus scrofa].
Length = 224
Score = 64.3 bits (155), Expect = 1e-10
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 13/198 (6%)
Frame = +1
Query: 262 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 438
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 439 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 591
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +G
Sbjct: 67 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 126
Query: 592 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 768
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 769 PTIKPH--PTDSKEYFEK 816
+ P+ ++K+ F K
Sbjct: 187 VMVLPNIPEEEAKKLFPK 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,500,499
Number of extensions: 814848
Number of successful extensions: 2595
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2577
Number of HSP's successfully gapped: 9
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007205
(1052 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 468 e-129
>Sscrofa_Chr14
|| Length = 153851969
Score = 468 bits (236), Expect = e-129
Identities = 273/280 (97%), Gaps = 4/280 (1%)
Strand = Plus / Minus
Query: 775 atcaagccacatccgactgattccaaagaatactttgagaaggtccatcagtagaccatc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604471 atcaagccacatccgactgattccaaagaatactttgagaaggtccatcagtagaccatc 140604412
Query: 835 cctcgtgcacctcccgcttccctccccagagaagagccacagttgggattcacgtttagc 894
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604411 ccttgtgcacctgccgcttccctccccagagaagagccacagttgggattcacgtttagc 140604352
Query: 895 atttcagagatgattgtagaagacaaaacacctccattatgcttgtcttcctaagtatca 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140604351 atttcagagatgattgtagaagacaaaacacctcaattatgcttgtcttcctaagtatca 140604292
Query: 955 ctttaaatgtgtttgtttttgtaacattggccaaggctttt-aaatatgggttagttact 1013
|||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 140604291 ctttaaatgt-tttgtttttgtaacattggccaaggcttttaaaatat-ggttagttact 140604234
Query: 1014 aacagga-gagtcctctactggtgatgtatggctggctgg 1052
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 140604233 aacaggaggagtcctctactggtgatgtatggctggctgg 140604194
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 607 agaggtctcttcataattgaccccaatggagtcatcaagcatttgagtgtcaatgatctc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604948 agaggtctcttcataattgaccccaatggagtcatcaagcatttgagtgtcaatgatctc 140604889
Query: 667 ccagtgggccgaagcgtggaagagaccctccgcttggtgaaggcgttccagtttgtggaa 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604888 ccagtgggccgaagcgtggaagagaccctccgcttggtgaaggcgttccagtttgtggaa 140604829
Query: 727 acccatggagaagtctgcccagccaactggacaccggattctcctaca 774
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604828 acccatggagaagtctgcccagccaactggacaccggattctcctaca 140604781
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 227 gttcttcccaccattcccctgccgtcacccagcatgcgccctattttaagggcacagccg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140611490 gttcttcccaccattcccctgccgtcacccagcatgcgccctattttaagggcacagccg 140611431
Query: 287 ttgtcaatggagagttcaaagaactaagccttgatgactataaggggaaatacttggtgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140611430 ttgtcaatggagagttcaaagaactaagccttgatgactataaggggaaatacttggtgc 140611371
Query: 347 tcttcttctatcctttggattt 368
||||||||||||||||||||||
Sbjct: 140611370 tcttcttctatcctttggattt 140611349
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 90 ggttatccgacatgtgagtgccgttccttggggcatttctgcctctgcagcccttaggcc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140613038 ggttatccgacatgtgagtgccgttccttggggcatttctgcctctgcagcccttaggcc 140612979
Query: 150 tgctccttctcgaagaacatgcttgacaagtgtgctgtggtctggttccagtcaagcaaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140612978 tgctccttctcgaagaacatgcttgacaagtgtgctgtggtctggttccagtcaagcaaa 140612919
Query: 210 attcgcctttagcaccagt 228
|||||||||||||||||||
Sbjct: 140612918 attcgcctttagcaccagt 140612900
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 369 cacctttgtgtgtcctacagaaattattgctttcagtgacaaagccaatgaatttcatga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140610328 cacctttgtgtgtcctacagaaattattgctttcagtgacaaagccaatgaatttcatga 140610269
Query: 429 tgtgaattgtgaagttgttgccgtgtcagtggattcccacttcagccatctggcttggat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140610268 tgtgaattgtgaagttgttgccgtgtcagtggattcccacttcagccatctggcttggat 140610209
Query: 489 aaatacaccaaggaag 504
||||||||||||||||
Sbjct: 140610208 aaatacaccaaggaag 140610193
Score = 194 bits (98), Expect = 7e-47
Identities = 104/106 (98%)
Strand = Plus / Minus
Query: 503 agaatggcggtttgggccacatgaacattgcgctcctgtcggatttgaccaaacaaattt 562
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 140608830 agaatggcggtttgggccacatgaacattgctctcctgtcggatttgaccaagcaaattt 140608771
Query: 563 cccgagactacggtgtgctgttagaaggtcccggtcttgccctgag 608
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140608770 cccgagactacggtgtgctgttagaaggtcccggtcttgccctgag 140608725
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 1 cttctttgcttctctggcccgaggccccagggcgcaccgaagat 44
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 140614893 cttctttgcttctctggcccgaggccccagtgcgcaccgaagat 140614850
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,513,383
Number of extensions: 150
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 7
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)