Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030182.1| adenylyl cyclase-associated protein 1 [Bos t... 453 e-128
Alignment gi|XP_002691825.1| PREDICTED: CAP1 protein-like [Bos taurus]. 434 e-122
Alignment gi|XP_600414.2| PREDICTED: CAP1 protein-like isoform 2 [Bos tau... 434 e-122
Alignment gi|NP_001092449.1| adenylyl cyclase-associated protein 2 [Bos t... 281 5e-76
>ref|NP_001030182.1| adenylyl cyclase-associated protein 1 [Bos taurus].
Length = 472
Score = 453 bits (1166), Expect = e-128
Identities = 234/300 (78%), Positives = 243/300 (81%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAKAG PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAKAGTTPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEV+TFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSG +R+GPKPF
Sbjct: 241 PVPTSSGSDDSASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGLIRSGPKPF 300
>ref|XP_002691825.1| PREDICTED: CAP1 protein-like [Bos taurus].
Length = 471
Score = 434 bits (1116), Expect = e-122
Identities = 230/301 (76%), Positives = 239/301 (79%), Gaps = 1/301 (0%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAK G PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAK-GTTPYVQAFDSLLAGPVAEYLK 59
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKE GGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEV+TFRE
Sbjct: 60 ISKESGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 119
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPG YVKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGLYVKEMNDAAMFYTNRVLKEYKDVDKKHV 179
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL-XXXXXXXXXXXXXXXXXXXXXX 769
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 180 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPRQVHLP 239
Query: 770 XXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKP 949
ALFAQINQGESI HALKHVSDDMKT +NPA +AQSG +R+GPKP
Sbjct: 240 PPVPTSSGSDDSASRSALFAQINQGESIIHALKHVSDDMKTHKNPALKAQSGLIRSGPKP 299
Query: 950 F 952
F
Sbjct: 300 F 300
>ref|XP_600414.2| PREDICTED: CAP1 protein-like isoform 2 [Bos taurus].
Length = 471
Score = 434 bits (1116), Expect = e-122
Identities = 230/301 (76%), Positives = 239/301 (79%), Gaps = 1/301 (0%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAK G PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAK-GTTPYVQAFDSLLAGPVAEYLK 59
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKE GGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEV+TFRE
Sbjct: 60 ISKESGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 119
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPG YVKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGLYVKEMNDAAMFYTNRVLKEYKDVDKKHV 179
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL-XXXXXXXXXXXXXXXXXXXXXX 769
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 180 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPRQVHLP 239
Query: 770 XXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKP 949
ALFAQINQGESI HALKHVSDDMKT +NPA +AQSG +R+GPKP
Sbjct: 240 PPVPTSSGSDDSASRSALFAQINQGESIIHALKHVSDDMKTHKNPALKAQSGLIRSGPKP 299
Query: 950 F 952
F
Sbjct: 300 F 300
>ref|NP_001092449.1| adenylyl cyclase-associated protein 2 [Bos taurus].
Length = 486
Score = 281 bits (720), Expect = 5e-76
Identities = 156/298 (52%), Positives = 188/298 (63%), Gaps = 7/298 (2%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLE---AVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAE 223
MA+MQ L+ERLERAVGRLE A SH CG + G AP V+AFD L+ VAE
Sbjct: 1 MAEMQGLMERLERAVGRLELLSAGSHRPPGDCGE-INGVNGGVAPSVEAFDKLMNSMVAE 59
Query: 224 YLKISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVIT 403
+LK S+ + GDV+ HAEMVH+ + ++A L+ ASQ QQP N ++ LL PISE+IQE+ T
Sbjct: 60 FLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQYQQPQENDVAALLKPISEKIQEIQT 119
Query: 404 FREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXX 583
FRE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 120 FRERNRGSTMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDL 179
Query: 584 XXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXX 751
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 180 RHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSLGPGLPPPPPPPP 239
Query: 752 XXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSG 925
ALFAQ+NQGE+IT L+HV+DD KT +NP A G
Sbjct: 240 PPGPPLLFESEGIKEPSSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPNLRAHGG 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,232,909
Number of extensions: 1025786
Number of successful extensions: 3091
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3053
Number of HSP's successfully gapped: 7
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848565.1| PREDICTED: similar to Adenylyl cyclase-associat... 456 e-128
Alignment gi|XP_532545.2| PREDICTED: similar to Adenylyl cyclase-associat... 442 e-124
Alignment gi|XP_856632.1| PREDICTED: similar to Adenylyl cyclase-associat... 434 e-122
Alignment gi|XP_535897.2| PREDICTED: similar to adenylyl cyclase-associat... 283 1e-76
Alignment gi|XP_858447.1| PREDICTED: similar to adenylyl cyclase-associat... 283 1e-76
Alignment gi|XP_856592.1| PREDICTED: similar to CAP, adenylate cyclase-as... 120 3e-27
Alignment gi|XP_856556.1| PREDICTED: similar to CAP, adenylate cyclase-as... 86 7e-17
Alignment gi|XP_858406.1| PREDICTED: similar to adenylyl cyclase-associat... 62 1e-09
Alignment gi|XP_856509.1| PREDICTED: similar to CAP, adenylate cyclase-as... 59 9e-09
>ref|XP_848565.1| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 2 [Canis familiaris].
Length = 475
Score = 456 bits (1173), Expect = e-128
Identities = 237/300 (79%), Positives = 244/300 (81%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 241 PVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
>ref|XP_532545.2| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 1 [Canis familiaris].
Length = 501
Score = 442 bits (1136), Expect = e-124
Identities = 237/326 (72%), Positives = 244/326 (74%), Gaps = 26/326 (7%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITH--------------------------ALKHV 874
ALFAQINQGESITH ALKHV
Sbjct: 241 PVPTSSGSDESASRSALFAQINQGESITHGKPDGLNQNPGIRGMKERHKVAVVPTALKHV 300
Query: 875 SDDMKTPQNPAFEAQSGPVRTGPKPF 952
SDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 301 SDDMKTHKNPALKAQSGPVRSGPKPF 326
>ref|XP_856632.1| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 7 [Canis familiaris].
Length = 490
Score = 434 bits (1117), Expect = e-122
Identities = 234/317 (73%), Positives = 242/317 (76%), Gaps = 17/317 (5%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP GNKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAK-----------------ELXXXXXX 721
AYLSIWTELQAYIKEFHTTGLAWSKT V+K +L
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKT--VSKSFLPLSVPPRQEDGCYLQLSGLPSG 238
Query: 722 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQN 901
ALFAQINQGESITHALKHVSDDMKT +N
Sbjct: 239 PSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKN 298
Query: 902 PAFEAQSGPVRTGPKPF 952
PA +AQSGPVR+GPKPF
Sbjct: 299 PALKAQSGPVRSGPKPF 315
>ref|XP_535897.2| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform
1 [Canis familiaris].
Length = 477
Score = 283 bits (725), Expect = 1e-76
Identities = 155/299 (51%), Positives = 191/299 (63%), Gaps = 8/299 (2%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVA 220
MA+MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VA
Sbjct: 1 MAEMQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVA 58
Query: 221 EYLKISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVI 400
E+LK S+ + GDV+ HAEMVH+ + ++A L+ ASQ QQP N ++ LL PISE+IQE+
Sbjct: 59 EFLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQHQQPQENDVAALLKPISEKIQEIQ 118
Query: 401 TFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXX 580
TFRE+NRGSK+FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 119 TFRERNRGSKMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSD 178
Query: 581 XXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXX 748
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 179 LRHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSPGPGLPPPPPPP 238
Query: 749 XXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSG 925
ALFAQ+NQGE IT L+HV+DD KT +NP+ A G
Sbjct: 239 PPPGPPPFFENEGRREESSPSRSALFAQLNQGEEITKGLRHVTDDQKTHKNPSLRAPGG 297
>ref|XP_858447.1| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform
3 [Canis familiaris].
Length = 460
Score = 283 bits (725), Expect = 1e-76
Identities = 155/299 (51%), Positives = 191/299 (63%), Gaps = 8/299 (2%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVA 220
MA+MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VA
Sbjct: 1 MAEMQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVA 58
Query: 221 EYLKISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVI 400
E+LK S+ + GDV+ HAEMVH+ + ++A L+ ASQ QQP N ++ LL PISE+IQE+
Sbjct: 59 EFLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQHQQPQENDVAALLKPISEKIQEIQ 118
Query: 401 TFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXX 580
TFRE+NRGSK+FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 119 TFRERNRGSKMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSD 178
Query: 581 XXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXX 748
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 179 LRHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSPGPGLPPPPPPP 238
Query: 749 XXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSG 925
ALFAQ+NQGE IT L+HV+DD KT +NP+ A G
Sbjct: 239 PPPGPPPFFENEGRREESSPSRSALFAQLNQGEEITKGLRHVTDDQKTHKNPSLRAPGG 297
>ref|XP_856592.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 6 [Canis familiaris].
Length = 326
Score = 120 bits (300), Expect = 3e-27
Identities = 64/108 (59%), Positives = 68/108 (62%)
Frame = +2
Query: 629 LQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 808
LQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 44 LQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESA 103
Query: 809 XXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 104 SRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 151
Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAF 193
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPY+QA+
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYLQAY 47
>ref|XP_856556.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 5 [Canis familiaris].
Length = 272
Score = 85.5 bits (210), Expect = 7e-17
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = +2
Query: 818 ALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 53 ALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 97
>ref|XP_858406.1| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform
2 [Canis familiaris].
Length = 82
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Frame = +2
Query: 62 MQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVAEYL 229
MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VAE+L
Sbjct: 1 MQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVAEFL 58
Query: 230 KISKEIGGDVQKH 268
K S+ + GDV+ H
Sbjct: 59 KKSRILAGDVETH 71
>ref|XP_856509.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 4 [Canis familiaris].
Length = 218
Score = 58.5 bits (140), Expect = 9e-09
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2
Query: 860 ALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 13 ALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 43
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,620,988
Number of extensions: 1043745
Number of successful extensions: 3438
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 13
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001099000.1| adenylyl cyclase-associated protein 1 [Homo ... 450 e-126
Alignment gi|NP_006358.1| adenylyl cyclase-associated protein 1 [Homo sap... 450 e-126
Alignment gi|NP_006357.1| adenylyl cyclase-associated protein 2 [Homo sap... 287 9e-78
>ref|NP_001099000.1| adenylyl cyclase-associated protein 1 [Homo sapiens].
Length = 475
Score = 450 bits (1157), Expect = e-126
Identities = 239/314 (76%), Positives = 247/314 (78%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQNLVERLERAVGRLEAVSH SD H GY DS +KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP NKLS+LLAPISEQI+EVITFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 241 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
Query: 953 LCI*TWNQPIPQTS 994
+ P PQTS
Sbjct: 301 ------SAPKPQTS 308
>ref|NP_006358.1| adenylyl cyclase-associated protein 1 [Homo sapiens].
Length = 475
Score = 450 bits (1157), Expect = e-126
Identities = 239/314 (76%), Positives = 247/314 (78%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQNLVERLERAVGRLEAVSH SD H GY DS +KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLE+ALLVTASQCQQP NKLS+LLAPISEQI+EVITFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE 120
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 241 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
Query: 953 LCI*TWNQPIPQTS 994
+ P PQTS
Sbjct: 301 ------SAPKPQTS 308
>ref|NP_006357.1| adenylyl cyclase-associated protein 2 [Homo sapiens].
Length = 477
Score = 287 bits (735), Expect = 9e-78
Identities = 158/305 (51%), Positives = 196/305 (64%), Gaps = 7/305 (2%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVS---HASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAE 223
MA+MQ LVERLERAV RLE++S H +CG + AG AP V+AFD L+ VAE
Sbjct: 1 MANMQGLVERLERAVSRLESLSAESHRPPGNCGEVNGVI-AGVAPSVEAFDKLMDSMVAE 59
Query: 224 YLKISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVIT 403
+LK S+ + GDV+ HAEMVH+ + ++A L+ ASQ QQP N ++ LL PISE+IQE+ T
Sbjct: 60 FLKNSRILAGDVETHAEMVHSAFQAQRAFLLMASQYQQPHENDVAALLKPISEKIQEIQT 119
Query: 404 FREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXX 583
FRE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 120 FRERNRGSNMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDL 179
Query: 584 XXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXX 751
+YL+IW+ELQAYIKE HTTGL WSKTGPVA +
Sbjct: 180 RHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPPPPPLP 239
Query: 752 XXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPV 931
ALFAQ+NQGE+IT L+HV+DD KT +NP+ AQ G
Sbjct: 240 PPGPPPLFENEGKKEESSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPSLRAQGGQT 299
Query: 932 RTGPK 946
++ K
Sbjct: 300 QSPTK 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,064,942
Number of extensions: 1036043
Number of successful extensions: 2914
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2897
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031624.2| adenylyl cyclase-associated protein 1 [Mus musc... 441 e-124
Alignment gi|NP_080332.1| adenylyl cyclase-associated protein 2 [Mus musc... 273 1e-73
>ref|NP_031624.2| adenylyl cyclase-associated protein 1 [Mus musculus].
Length = 474
Score = 441 bits (1135), Expect = e-124
Identities = 234/314 (74%), Positives = 244/314 (77%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQNLVERLERAVGRLEAVSH SD HCGYGDS +K GA PYVQAFDSLLA PVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHCGYGDSPSK-GAVPYVQAFDSLLANPVAEYLK 59
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
+SKEIGGDVQKHAEMVHTGLKLE+ALL TASQCQQP GNKLS+LLAPISEQIQEVITFRE
Sbjct: 60 MSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFRE 119
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 592
KNRGSK FNHLSAVSESIQALGWVA+A KPGP+VKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHV 179
Query: 593 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 772
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 180 DWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSVGSGPPPPPPGPPPP 239
Query: 773 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVR+GPKPF
Sbjct: 240 PISTSSGSDDSASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 299
Query: 953 LCI*TWNQPIPQTS 994
+ P PQTS
Sbjct: 300 ------SAPKPQTS 307
>ref|NP_080332.1| adenylyl cyclase-associated protein 2 [Mus musculus].
Length = 476
Score = 273 bits (699), Expect = 1e-73
Identities = 154/304 (50%), Positives = 191/304 (62%), Gaps = 6/304 (1%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASD-THCGYGD-SAAKAGAAPYVQAFDSLLAGPVAEY 226
M DM L+ERLERAV RLE +S D G G+ + G AP V+AFD L+ VAE+
Sbjct: 1 MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF 60
Query: 227 LKISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITF 406
LK S+ + GDV+ HAEMVH + ++A L+ SQ QQP N+++ LL PISE+IQE+ TF
Sbjct: 61 LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTF 120
Query: 407 REKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXX 586
RE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 121 RERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR 180
Query: 587 XXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXXX 754
+YL+IW+ELQAYI+E HTTGL WSKTGPVA
Sbjct: 181 HVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPP 240
Query: 755 XXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVR 934
ALFAQ+NQGE+IT L+HV+DD KT +NP+ AQ G +R
Sbjct: 241 PGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQ-GQIR 299
Query: 935 TGPK 946
+ K
Sbjct: 300 SPTK 303
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,258,622
Number of extensions: 875076
Number of successful extensions: 2532
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2524
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127870.1| PREDICTED: adenylyl cyclase-associated prote... 331 3e-91
Alignment gi|XP_003127872.2| PREDICTED: zinc finger protein Rlf-like, par... 278 4e-75
Alignment gi|XP_003361634.1| PREDICTED: adenylyl cyclase-associated prote... 167 1e-41
Alignment gi|XP_003356378.1| PREDICTED: adenylyl cyclase-associated prote... 87 1e-17
>ref|XP_003127870.1| PREDICTED: adenylyl cyclase-associated protein 1-like [Sus scrofa].
Length = 173
Score = 331 bits (849), Expect = 3e-91
Identities = 170/172 (98%), Positives = 170/172 (98%)
Frame = +2
Query: 53 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 232
MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 233 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPVGNKLSELLAPISEQIQEVITFRE 412
ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQP NKLSELLAPISEQIQEVITFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 118
Query: 413 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY 568
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 119 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY 170
>ref|XP_003127872.2| PREDICTED: zinc finger protein Rlf-like, partial [Sus scrofa].
Length = 1526
Score = 278 bits (710), Expect = 4e-75
Identities = 147/201 (73%), Positives = 149/201 (74%)
Frame = +2
Query: 350 KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND 529
KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND
Sbjct: 1151 KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND 1210
Query: 530 AAMFYTNRVLKEYXXXXXXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXX 709
AAMFYTNRVLKEY AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 1211 AAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSG 1270
Query: 710 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMK 889
ALFAQINQGESITHALKHVSDDMK
Sbjct: 1271 LPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMK 1330
Query: 890 TPQNPAFEAQSGPVRTGPKPF 952
T +NPA +AQSGPVRTGPKPF
Sbjct: 1331 THKNPALKAQSGPVRTGPKPF 1351
>ref|XP_003361634.1| PREDICTED: adenylyl cyclase-associated protein 2-like, partial [Sus
scrofa].
Length = 283
Score = 167 bits (422), Expect = 1e-41
Identities = 82/125 (65%), Positives = 97/125 (77%)
Frame = +2
Query: 308 LLVTASQCQQPVGNKLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVA 487
L+ + C Q N ++ LL PISE+IQE+ TFRE+NRGSK+FNHLSAVSESI ALGW+A
Sbjct: 10 LVTVPNVCLQ---NDVAALLKPISEKIQEIQTFRERNRGSKMFNHLSAVSESIPALGWIA 66
Query: 488 MAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXXXXXXAYLSIWTELQAYIKEFHTTGL 667
++PKPGPYVKEMNDAA FYTNRVLK+Y +YL+IW+ELQAYIKE HTTGL
Sbjct: 67 VSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLRHVDWVKSYLNIWSELQAYIKEHHTTGL 126
Query: 668 AWSKT 682
WSKT
Sbjct: 127 TWSKT 131
>ref|XP_003356378.1| PREDICTED: adenylyl cyclase-associated protein 1-like [Sus scrofa].
Length = 294
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/45 (91%), Positives = 43/45 (95%)
Frame = +2
Query: 818 ALFAQINQGESITHALKHVSDDMKTPQNPAFEAQSGPVRTGPKPF 952
ALFAQINQGESITHALKHVSDDMKT +NPA +AQSGPVRTGPKPF
Sbjct: 75 ALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRTGPKPF 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,589,483
Number of extensions: 654768
Number of successful extensions: 1907
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1897
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007212
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 287 6e-75
>Sscrofa_Chr06
|| Length = 157765593
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 347 aataagctttctgaattgttggcacccatctccgagcagatccaagaagtaataaccttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89023930 aataagctttctgaattgttggcacccatctccgagcagatccaagaagtaataaccttt 89023989
Query: 407 cgggagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89023990 cgggagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatc 89024049
Query: 467 caggccctgggttgggtggctatgg 491
|||||||||||||||||||||||||
Sbjct: 89024050 caggccctgggttgggtggctatgg 89024074
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 350 aagctttctgaattgttggcacccatctccgagcagatccaagaagtaataacctttcgg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309905 aagctttctgaattgttggcacccatctccgagcagatccaagaagtaataacctttcgg 89309846
Query: 410 gagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatccag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309845 gagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatccag 89309786
Query: 470 gccctgggttgggtggctatgg 491
||||||||||||||||||||||
Sbjct: 89309785 gccctgggttgggtggctatgg 89309764
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 38 agcaggtggtacattatggctgacatgcaaaatctggtagaaagattggagagagcagtg 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89018684 agcaggtggtacattatggctgacatgcaaaatctggtagaaagattggagagagcagtg 89018743
Query: 98 ggccgcctggaggcagtctcccatgcctctgacacacactgtggatatggagacagtgct 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89018744 ggccgcctggaggcagtctcccatgcctctgacacacactgtggatatggagacagtgct 89018803
Query: 158 gcaaaag 164
|||||||
Sbjct: 89018804 gcaaaag 89018810
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 163 agcaggagcagctccgtatgtgcaagcatttgactcactgctggccggtcctgtggcgga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89019710 agcaggagcagctccgtatgtgcaagcatttgactcactgctggccggtcctgtggcgga 89019769
Query: 223 atacctcaagatcagtaaagagattgggggagatgtgcagaaacatg 269
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89019770 atacctcaagatcagtaaagagattgggggagatgtgcagaaacatg 89019816
Score = 212 bits (107), Expect = 3e-52
Identities = 129/135 (95%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 860 gccctgaaacacgtatccgatgacatgaagactccacagaaccctgcttttgaggctcag 919
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 89125791 gccctgaaacacgtatccgatgacatgaagactcacaagaaccctgctttgaaggctcag 89125732
Query: 920 agtgggcccgtacgaactggccccaaaccattcctctgcatctaaacctggaatcagccc 979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89125731 agtgggcccgtacgaactggccccaaaccatt-ctctgcatctaaacctggaatcagccc 89125673
Query: 980 atcccccaaaccagt 994
|||||||||||||||
Sbjct: 89125672 atcccccaaaccagt 89125658
Score = 212 bits (107), Expect = 3e-52
Identities = 129/135 (95%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 860 gccctgaaacacgtatccgatgacatgaagactccacagaaccctgcttttgaggctcag 919
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 89304025 gccctgaaacacgtatccgatgacatgaagactcacaagaaccctgctttgaaggctcag 89303966
Query: 920 agtgggcccgtacgaactggccccaaaccattcctctgcatctaaacctggaatcagccc 979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89303965 agtgggcccgtacgaactggccccaaaccatt-ctctgcatctaaacctggaatcagccc 89303907
Query: 980 atcccccaaaccagt 994
|||||||||||||||
Sbjct: 89303906 atcccccaaaccagt 89303892
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 577 ggataagaagcacgtggactgggtcaaagcttacttgagtatatggacagagctgcaggc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89307703 ggataagaagcacgtggactgggtcaaagcttacttgagtatatggacagagctgcaggc 89307644
Query: 637 ttacattaaggagttccatacgactggactggcctggagcaaaacgg 683
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89307643 ttacattaaggagttccatacgactggactggcctggagcaaaacgg 89307597
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 490 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89024174 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 89024233
Query: 550 ccgagtcctcaaggagtacaaagatgtg 577
||||||||||||||||||||||||||||
Sbjct: 89024234 ccgagtcctcaaggagtacaaagatgtg 89024261
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 490 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309664 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 89309605
Query: 550 ccgagtcctcaaggagtacaaagatgtg 577
||||||||||||||||||||||||||||
Sbjct: 89309604 ccgagtcctcaaggagtacaaagatgtg 89309577
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 269 gcggaaatggtccatacaggtctgaagttggagcaagctctcttggttacagcctctcag 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89021556 gcggaaatggtccatacaggtctgaagttggagcaagctctcttggttacagcctctcag 89021615
Query: 329 tgccagcagcctgtaggt 346
||||||||||||||||||
Sbjct: 89021616 tgccagcagcctgtaggt 89021633
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 786 gttcaggctcagatgagtctgcctcacgctcagcactgtttgcgcagattaatcaagggg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89127944 gttcaggctcagatgagtctgcctcacgctcagcactgtttgcgcagattaatcaagggg 89127885
Query: 846 agagcatcacacacg 860
|||||||||||||||
Sbjct: 89127884 agagcatcacacacg 89127870
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 786 gttcaggctcagatgagtctgcctcacgctcagcactgtttgcgcagattaatcaagggg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89306184 gttcaggctcagatgagtctgcctcacgctcagcactgtttgcgcagattaatcaagggg 89306125
Query: 846 agagcatcacacacg 860
|||||||||||||||
Sbjct: 89306124 agagcatcacacacg 89306110
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 682 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcagg 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89128048 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcagg 89127992
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 682 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcagg 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89306288 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcagg 89306232
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 agagcggctgatcgcagtcccgaggtgaggaactctgag 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89004640 agagcggctgatcgcagtcccgaggtgaggaactctgag 89004678
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,514,514
Number of extensions: 129
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 15
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)