Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030182.1| adenylyl cyclase-associated protein 1 [Bos t... 450 e-127
Alignment gi|XP_002691825.1| PREDICTED: CAP1 protein-like [Bos taurus]. 431 e-121
Alignment gi|XP_600414.2| PREDICTED: CAP1 protein-like isoform 2 [Bos tau... 431 e-121
Alignment gi|NP_001092449.1| adenylyl cyclase-associated protein 2 [Bos t... 278 5e-75
>ref|NP_001030182.1| adenylyl cyclase-associated protein 1 [Bos taurus].
Length = 472
Score = 450 bits (1158), Expect = e-127
Identities = 235/304 (77%), Positives = 244/304 (80%), Gaps = 2/304 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAKAG PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAKAGTTPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEV+TFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPF 1009
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SG +++GPKPF
Sbjct: 241 PVPTSSGSDDSASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGLIRSGPKPF 300
Query: 1010 FASK 1021
ASK
Sbjct: 301 SASK 304
>ref|XP_002691825.1| PREDICTED: CAP1 protein-like [Bos taurus].
Length = 471
Score = 431 bits (1108), Expect = e-121
Identities = 231/305 (75%), Positives = 240/305 (78%), Gaps = 3/305 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAK G PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAK-GTTPYVQAFDSLLAGPVAEYLK 59
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKE GGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEV+TFRE
Sbjct: 60 ISKESGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 119
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPG YVKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGLYVKEMNDAAMFYTNRVLKEYKDVDKKHV 179
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL-XXXXXXXXXXXXXXXXXXXXXX 826
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 180 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPRQVHLP 239
Query: 827 XXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKP 1006
ALFAQINQGESI HALKHVSDDMKTHK PA KA+SG +++GPKP
Sbjct: 240 PPVPTSSGSDDSASRSALFAQINQGESIIHALKHVSDDMKTHKNPALKAQSGLIRSGPKP 299
Query: 1007 FFASK 1021
F ASK
Sbjct: 300 FSASK 304
>ref|XP_600414.2| PREDICTED: CAP1 protein-like isoform 2 [Bos taurus].
Length = 471
Score = 431 bits (1108), Expect = e-121
Identities = 231/305 (75%), Positives = 240/305 (78%), Gaps = 3/305 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADM+NLVERLER VGRLEAVSHASDTHCGYGDSAAK G PYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMRNLVERLERVVGRLEAVSHASDTHCGYGDSAAK-GTTPYVQAFDSLLAGPVAEYLK 59
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKE GGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEV+TFRE
Sbjct: 60 ISKESGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVVTFRE 119
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPG YVKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGLYVKEMNDAAMFYTNRVLKEYKDVDKKHV 179
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL-XXXXXXXXXXXXXXXXXXXXXX 826
AYLSIWTELQAYIKEFHTTGLAWS+TGPVAKEL
Sbjct: 180 DWVKAYLSIWTELQAYIKEFHTTGLAWSRTGPVAKELSGLPSGPSAGSGPPPPPRQVHLP 239
Query: 827 XXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKP 1006
ALFAQINQGESI HALKHVSDDMKTHK PA KA+SG +++GPKP
Sbjct: 240 PPVPTSSGSDDSASRSALFAQINQGESIIHALKHVSDDMKTHKNPALKAQSGLIRSGPKP 299
Query: 1007 FFASK 1021
F ASK
Sbjct: 300 FSASK 304
>ref|NP_001092449.1| adenylyl cyclase-associated protein 2 [Bos taurus].
Length = 486
Score = 278 bits (712), Expect = 5e-75
Identities = 155/298 (52%), Positives = 188/298 (63%), Gaps = 9/298 (3%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLE---AVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAE 286
MA+MQ L+ERLERAVGRLE A SH CG + G AP V+AFD L+ VAE
Sbjct: 1 MAEMQGLMERLERAVGRLELLSAGSHRPPGDCGE-INGVNGGVAPSVEAFDKLMNSMVAE 59
Query: 287 YLKISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVIT 460
+LK S+ + GDV+ HAEMVH+ + ++ L+ ASQ QQP N ++ LL PISE+IQE+ T
Sbjct: 60 FLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQYQQPQENDVAALLKPISEKIQEIQT 119
Query: 461 FREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXX 640
FRE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 120 FRERNRGSTMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDL 179
Query: 641 XXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXX 808
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 180 RHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSLGPGLPPPPPPPP 239
Query: 809 XXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSG 982
ALFAQ+NQGE+IT L+HV+DD KT+K P +A G
Sbjct: 240 PPGPPLLFESEGIKEPSSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPNLRAHGG 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,087,578
Number of extensions: 1170259
Number of successful extensions: 4181
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4120
Number of HSP's successfully gapped: 7
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848565.1| PREDICTED: similar to Adenylyl cyclase-associat... 453 e-127
Alignment gi|XP_532545.2| PREDICTED: similar to Adenylyl cyclase-associat... 439 e-123
Alignment gi|XP_856632.1| PREDICTED: similar to Adenylyl cyclase-associat... 431 e-121
Alignment gi|XP_535897.2| PREDICTED: similar to adenylyl cyclase-associat... 282 3e-76
Alignment gi|XP_858447.1| PREDICTED: similar to adenylyl cyclase-associat... 282 3e-76
Alignment gi|XP_856592.1| PREDICTED: similar to CAP, adenylate cyclase-as... 125 5e-29
Alignment gi|XP_856556.1| PREDICTED: similar to CAP, adenylate cyclase-as... 91 1e-18
Alignment gi|XP_856509.1| PREDICTED: similar to CAP, adenylate cyclase-as... 64 2e-10
Alignment gi|XP_858406.1| PREDICTED: similar to adenylyl cyclase-associat... 62 1e-09
>ref|XP_848565.1| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 2 [Canis familiaris].
Length = 475
Score = 453 bits (1165), Expect = e-127
Identities = 241/326 (73%), Positives = 250/326 (76%), Gaps = 2/326 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPF 1009
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF
Sbjct: 241 PVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
Query: 1010 FASKLEIXXXXXXXXXXXXXLLRLEG 1087
A K + +L LEG
Sbjct: 301 SAPKPGVSPSPKPTAKKEPAVLELEG 326
>ref|XP_532545.2| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 1 [Canis familiaris].
Length = 501
Score = 439 bits (1128), Expect = e-123
Identities = 241/352 (68%), Positives = 250/352 (71%), Gaps = 28/352 (7%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITH--------------------------ALKHV 931
ALFAQINQGESITH ALKHV
Sbjct: 241 PVPTSSGSDESASRSALFAQINQGESITHGKPDGLNQNPGIRGMKERHKVAVVPTALKHV 300
Query: 932 SDDMKTHKTPAFKARSGPVQTGPKPFFASKLEIXXXXXXXXXXXXXLLRLEG 1087
SDDMKTHK PA KA+SGPV++GPKPF A K + +L LEG
Sbjct: 301 SDDMKTHKNPALKAQSGPVRSGPKPFSAPKPGVSPSPKPTAKKEPAVLELEG 352
>ref|XP_856632.1| PREDICTED: similar to Adenylyl cyclase-associated protein 1 (CAP 1)
isoform 7 [Canis familiaris].
Length = 490
Score = 431 bits (1109), Expect = e-121
Identities = 238/343 (69%), Positives = 248/343 (72%), Gaps = 19/343 (5%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQIQEVIT+RE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNKLSDLLAPISEQIQEVITYRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAK-----------------ELXXXXXX 778
AYLSIWTELQAYIKEFHTTGLAWSKT V+K +L
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKT--VSKSFLPLSVPPRQEDGCYLQLSGLPSG 238
Query: 779 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKT 958
ALFAQINQGESITHALKHVSDDMKTHK
Sbjct: 239 PSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKN 298
Query: 959 PAFKARSGPVQTGPKPFFASKLEIXXXXXXXXXXXXXLLRLEG 1087
PA KA+SGPV++GPKPF A K + +L LEG
Sbjct: 299 PALKAQSGPVRSGPKPFSAPKPGVSPSPKPTAKKEPAVLELEG 341
>ref|XP_535897.2| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform 1
[Canis familiaris].
Length = 477
Score = 282 bits (722), Expect = 3e-76
Identities = 156/306 (50%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVA 283
MA+MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VA
Sbjct: 1 MAEMQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVA 58
Query: 284 EYLKISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVI 457
E+LK S+ + GDV+ HAEMVH+ + ++ L+ ASQ QQP N ++ LL PISE+IQE+
Sbjct: 59 EFLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQHQQPQENDVAALLKPISEKIQEIQ 118
Query: 458 TFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXX 637
TFRE+NRGSK+FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 119 TFRERNRGSKMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSD 178
Query: 638 XXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXX 805
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 179 LRHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSPGPGLPPPPPPP 238
Query: 806 XXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGP 985
ALFAQ+NQGE IT L+HV+DD KTHK P+ +A G
Sbjct: 239 PPPGPPPFFENEGRREESSPSRSALFAQLNQGEEITKGLRHVTDDQKTHKNPSLRAPGGQ 298
Query: 986 VQTGPK 1003
+ K
Sbjct: 299 TPSPTK 304
>ref|XP_858447.1| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform 3
[Canis familiaris].
Length = 460
Score = 282 bits (722), Expect = 3e-76
Identities = 156/306 (50%), Positives = 193/306 (63%), Gaps = 10/306 (3%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVA 283
MA+MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VA
Sbjct: 1 MAEMQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVA 58
Query: 284 EYLKISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVI 457
E+LK S+ + GDV+ HAEMVH+ + ++ L+ ASQ QQP N ++ LL PISE+IQE+
Sbjct: 59 EFLKKSRILAGDVETHAEMVHSAFQAQRAFLLMASQHQQPQENDVAALLKPISEKIQEIQ 118
Query: 458 TFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXX 637
TFRE+NRGSK+FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 119 TFRERNRGSKMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSD 178
Query: 638 XXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXX 805
+YL+IW+ELQAYIKE HTTGL WSKTGPVA
Sbjct: 179 LRHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTASALSVLSPGPGLPPPPPPP 238
Query: 806 XXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGP 985
ALFAQ+NQGE IT L+HV+DD KTHK P+ +A G
Sbjct: 239 PPPGPPPFFENEGRREESSPSRSALFAQLNQGEEITKGLRHVTDDQKTHKNPSLRAPGGQ 298
Query: 986 VQTGPK 1003
+ K
Sbjct: 299 TPSPTK 304
>ref|XP_856592.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 6 [Canis familiaris].
Length = 326
Score = 125 bits (315), Expect = 5e-29
Identities = 70/134 (52%), Positives = 76/134 (56%)
Frame = +2
Query: 686 LQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 865
LQAYIKEFHTTGLAWSKTGPVA+EL
Sbjct: 44 LQAYIKEFHTTGLAWSKTGPVAQELSGLPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESA 103
Query: 866 XXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPFFASKLEIXXXXX 1045
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF A K +
Sbjct: 104 SRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPFSAPKPGVSPSPK 163
Query: 1046 XXXXXXXXLLRLEG 1087
+L LEG
Sbjct: 164 PTAKKEPAVLELEG 177
Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAF 256
MADMQ LVERLERAVGRLEAVSHASD HCGYGDSA KAGAAPY+QA+
Sbjct: 1 MADMQKLVERLERAVGRLEAVSHASDMHCGYGDSAPKAGAAPYLQAY 47
>ref|XP_856556.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 5 [Canis familiaris].
Length = 272
Score = 91.3 bits (225), Expect = 1e-18
Identities = 46/71 (64%), Positives = 51/71 (71%)
Frame = +2
Query: 875 ALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPFFASKLEIXXXXXXXX 1054
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF A K +
Sbjct: 53 ALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPFSAPKPGVSPSPKPTA 112
Query: 1055 XXXXXLLRLEG 1087
+L LEG
Sbjct: 113 KKEPAVLELEG 123
>ref|XP_856509.1| PREDICTED: similar to CAP, adenylate cyclase-associated protein 1
isoform 4 [Canis familiaris].
Length = 218
Score = 64.3 bits (155), Expect = 2e-10
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = +2
Query: 917 ALKHVSDDMKTHKTPAFKARSGPVQTGPKPFFASKLEIXXXXXXXXXXXXXLLRLEG 1087
ALKHVSDDMKTHK PA KA+SGPV++GPKPF A K + +L LEG
Sbjct: 13 ALKHVSDDMKTHKNPALKAQSGPVRSGPKPFSAPKPGVSPSPKPTAKKEPAVLELEG 69
>ref|XP_858406.1| PREDICTED: similar to adenylyl cyclase-associated protein 2 isoform
2 [Canis familiaris].
Length = 82
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Frame = +2
Query: 125 MQNLVERLERAVGRLEAVSHASDTHCGYGD----SAAKAGAAPYVQAFDSLLAGPVAEYL 292
MQ L+ERLER VGRLE +S +++H GD + G AP V+AFD L+ VAE+L
Sbjct: 1 MQGLMERLERVVGRLEVLS--AESHRPPGDFGEINGVNGGVAPSVEAFDKLMNSMVAEFL 58
Query: 293 KISKEIGGDVQKH 331
K S+ + GDV+ H
Sbjct: 59 KKSRILAGDVETH 71
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,793,905
Number of extensions: 1194734
Number of successful extensions: 4488
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4388
Number of HSP's successfully gapped: 13
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001099000.1| adenylyl cyclase-associated protein 1 [Homo ... 447 e-125
Alignment gi|NP_006358.1| adenylyl cyclase-associated protein 1 [Homo sap... 447 e-125
Alignment gi|NP_006357.1| adenylyl cyclase-associated protein 2 [Homo sap... 285 7e-77
>ref|NP_001099000.1| adenylyl cyclase-associated protein 1 [Homo sapiens].
Length = 475
Score = 447 bits (1149), Expect = e-125
Identities = 239/326 (73%), Positives = 248/326 (76%), Gaps = 2/326 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQNLVERLERAVGRLEAVSH SD H GY DS +KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQI+EVITFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPF 1009
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF
Sbjct: 241 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
Query: 1010 FASKLEIXXXXXXXXXXXXXLLRLEG 1087
A K + +L LEG
Sbjct: 301 SAPKPQTSPSPKRATKKEPAVLELEG 326
>ref|NP_006358.1| adenylyl cyclase-associated protein 1 [Homo sapiens].
Length = 475
Score = 447 bits (1149), Expect = e-125
Identities = 239/326 (73%), Positives = 248/326 (76%), Gaps = 2/326 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQNLVERLERAVGRLEAVSH SD H GY DS +KAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
ISKEIGGDVQKHAEMVHTGLKLE+ LLVTASQCQQP NKLS+LLAPISEQI+EVITFRE
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFRE 120
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHV 180
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 181 DWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPP 240
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPF 1009
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF
Sbjct: 241 PVSTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 300
Query: 1010 FASKLEIXXXXXXXXXXXXXLLRLEG 1087
A K + +L LEG
Sbjct: 301 SAPKPQTSPSPKRATKKEPAVLELEG 326
>ref|NP_006357.1| adenylyl cyclase-associated protein 2 [Homo sapiens].
Length = 477
Score = 285 bits (728), Expect = 7e-77
Identities = 157/305 (51%), Positives = 196/305 (64%), Gaps = 9/305 (2%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVS---HASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAE 286
MA+MQ LVERLERAV RLE++S H +CG + AG AP V+AFD L+ VAE
Sbjct: 1 MANMQGLVERLERAVSRLESLSAESHRPPGNCGEVNGVI-AGVAPSVEAFDKLMDSMVAE 59
Query: 287 YLKISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVIT 460
+LK S+ + GDV+ HAEMVH+ + ++ L+ ASQ QQP N ++ LL PISE+IQE+ T
Sbjct: 60 FLKNSRILAGDVETHAEMVHSAFQAQRAFLLMASQYQQPHENDVAALLKPISEKIQEIQT 119
Query: 461 FREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXX 640
FRE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 120 FRERNRGSNMFNHLSAVSESIPALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDL 179
Query: 641 XXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXX 808
+YL+IW+ELQAYIKE HTTGL WSKTGPVA +
Sbjct: 180 RHVDWVKSYLNIWSELQAYIKEHHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPPPPPLP 239
Query: 809 XXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPV 988
ALFAQ+NQGE+IT L+HV+DD KT+K P+ +A+ G
Sbjct: 240 PPGPPPLFENEGKKEESSPSRSALFAQLNQGEAITKGLRHVTDDQKTYKNPSLRAQGGQT 299
Query: 989 QTGPK 1003
Q+ K
Sbjct: 300 QSPTK 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,035,393
Number of extensions: 1180064
Number of successful extensions: 3878
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3858
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031624.2| adenylyl cyclase-associated protein 1 [Mus musc... 436 e-122
Alignment gi|NP_080332.1| adenylyl cyclase-associated protein 2 [Mus musc... 267 9e-72
>ref|NP_031624.2| adenylyl cyclase-associated protein 1 [Mus musculus].
Length = 474
Score = 436 bits (1122), Expect = e-122
Identities = 234/326 (71%), Positives = 244/326 (74%), Gaps = 2/326 (0%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQNLVERLERAVGRLEAVSH SD HCGYGDS +K GA PYVQAFDSLLA PVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHTSDMHCGYGDSPSK-GAVPYVQAFDSLLANPVAEYLK 59
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITFRE 469
+SKEIGGDVQKHAEMVHTGLKLE+ LL TASQCQQP NKLS+LLAPISEQIQEVITFRE
Sbjct: 60 MSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGNKLSDLLAPISEQIQEVITFRE 119
Query: 470 KNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXX 649
KNRGSK FNHLSAVSESIQALGWVA+A KPGP+VKEMNDAAMFYTNRVLKEY
Sbjct: 120 KNRGSKFFNHLSAVSESIQALGWVALAAKPGPFVKEMNDAAMFYTNRVLKEYRDVDKKHV 179
Query: 650 XXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXXXXXXXXXXXXXXXXXXXXXXX 829
AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 180 DWVRAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSVGSGPPPPPPGPPPP 239
Query: 830 XXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPF 1009
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV++GPKPF
Sbjct: 240 PISTSSGSDDSASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF 299
Query: 1010 FASKLEIXXXXXXXXXXXXXLLRLEG 1087
A K + LL LEG
Sbjct: 300 SAPKPQTSPSPKPATKKEPALLELEG 325
>ref|NP_080332.1| adenylyl cyclase-associated protein 2 [Mus musculus].
Length = 476
Score = 267 bits (683), Expect = 9e-72
Identities = 149/295 (50%), Positives = 186/295 (63%), Gaps = 8/295 (2%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASD-THCGYGD-SAAKAGAAPYVQAFDSLLAGPVAEY 289
M DM L+ERLERAV RLE +S D G G+ + G AP V+AFD L+ VAE+
Sbjct: 1 MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF 60
Query: 290 LKISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQP--NKLSELLAPISEQIQEVITF 463
LK S+ + GDV+ HAEMVH + ++ L+ SQ QQP N+++ LL PISE+IQE+ TF
Sbjct: 61 LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTF 120
Query: 464 REKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYXXXXXX 643
RE+NRGS +FNHLSAVSESI ALGW+A++PKPGPYVKEMNDAA FYTNRVLK+Y
Sbjct: 121 RERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLR 180
Query: 644 XXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL----XXXXXXXXXXXXXXXXX 811
+YL+IW+ELQAYI+E HTTGL WSKTGPVA
Sbjct: 181 HVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPP 240
Query: 812 XXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMKTHKTPAFKAR 976
ALFAQ+NQGE+IT L+HV+DD KT+K P+ +A+
Sbjct: 241 PGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQ 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,358,537
Number of extensions: 994172
Number of successful extensions: 3221
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3206
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127870.1| PREDICTED: adenylyl cyclase-associated prote... 335 3e-92
Alignment gi|XP_003127872.2| PREDICTED: zinc finger protein Rlf-like, par... 287 8e-78
Alignment gi|XP_003361634.1| PREDICTED: adenylyl cyclase-associated prote... 169 2e-42
Alignment gi|XP_003356378.1| PREDICTED: adenylyl cyclase-associated prote... 96 3e-20
>ref|XP_003127870.1| PREDICTED: adenylyl cyclase-associated protein 1-like [Sus scrofa].
Length = 173
Score = 335 bits (858), Expect = 3e-92
Identities = 169/170 (99%), Positives = 169/170 (99%)
Frame = +2
Query: 116 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 295
MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK
Sbjct: 1 MADMQNLVERLERAVGRLEAVSHASDTHCGYGDSAAKAGAAPYVQAFDSLLAGPVAEYLK 60
Query: 296 ISKEIGGDVQKHAEMVHTGLKLEQGLLVTASQCQQPNKLSELLAPISEQIQEVITFREKN 475
ISKEIGGDVQKHAEMVHTGLKLEQ LLVTASQCQQPNKLSELLAPISEQIQEVITFREKN
Sbjct: 61 ISKEIGGDVQKHAEMVHTGLKLEQALLVTASQCQQPNKLSELLAPISEQIQEVITFREKN 120
Query: 476 RGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY 625
RGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY
Sbjct: 121 RGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEY 170
>ref|XP_003127872.2| PREDICTED: zinc finger protein Rlf-like, partial [Sus scrofa].
Length = 1526
Score = 287 bits (734), Expect = 8e-78
Identities = 156/227 (68%), Positives = 158/227 (69%)
Frame = +2
Query: 407 KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND 586
KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND
Sbjct: 1151 KLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMND 1210
Query: 587 AAMFYTNRVLKEYXXXXXXXXXXXXAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELXX 766
AAMFYTNRVLKEY AYLSIWTELQAYIKEFHTTGLAWSKTGPVAKEL
Sbjct: 1211 AAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSG 1270
Query: 767 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFAQINQGESITHALKHVSDDMK 946
ALFAQINQGESITHALKHVSDDMK
Sbjct: 1271 LPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMK 1330
Query: 947 THKTPAFKARSGPVQTGPKPFFASKLEIXXXXXXXXXXXXXLLRLEG 1087
THK PA KA+SGPV+TGPKPF ASK I LL LEG
Sbjct: 1331 THKNPALKAQSGPVRTGPKPFSASKPGISPSPKPVTKKEPALLELEG 1377
>ref|XP_003361634.1| PREDICTED: adenylyl cyclase-associated protein 2-like, partial [Sus
scrofa].
Length = 283
Score = 169 bits (428), Expect = 2e-42
Identities = 82/123 (66%), Positives = 96/123 (78%)
Frame = +2
Query: 371 LLVTASQCQQPNKLSELLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMA 550
+LVT N ++ LL PISE+IQE+ TFRE+NRGSK+FNHLSAVSESI ALGW+A++
Sbjct: 9 ILVTVPNVCLQNDVAALLKPISEKIQEIQTFRERNRGSKMFNHLSAVSESIPALGWIAVS 68
Query: 551 PKPGPYVKEMNDAAMFYTNRVLKEYXXXXXXXXXXXXAYLSIWTELQAYIKEFHTTGLAW 730
PKPGPYVKEMNDAA FYTNRVLK+Y +YL+IW+ELQAYIKE HTTGL W
Sbjct: 69 PKPGPYVKEMNDAATFYTNRVLKDYKHSDLRHVDWVKSYLNIWSELQAYIKEHHTTGLTW 128
Query: 731 SKT 739
SKT
Sbjct: 129 SKT 131
>ref|XP_003356378.1| PREDICTED: adenylyl cyclase-associated protein 1-like [Sus scrofa].
Length = 294
Score = 96.3 bits (238), Expect = 3e-20
Identities = 50/71 (70%), Positives = 52/71 (73%)
Frame = +2
Query: 875 ALFAQINQGESITHALKHVSDDMKTHKTPAFKARSGPVQTGPKPFFASKLEIXXXXXXXX 1054
ALFAQINQGESITHALKHVSDDMKTHK PA KA+SGPV+TGPKPF ASK I
Sbjct: 75 ALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRTGPKPFSASKPGISPSPKPVT 134
Query: 1055 XXXXXLLRLEG 1087
LL LEG
Sbjct: 135 KKEPALLELEG 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,752,061
Number of extensions: 750110
Number of successful extensions: 2544
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2541
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007217
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 317 7e-84
>Sscrofa_Chr06
|| Length = 157765593
Score = 317 bits (160), Expect = 7e-84
Identities = 177/180 (98%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 739 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcgggtcc 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 89306288 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcaggtcc 89306229
Query: 799 tcctcctcctccaccagggcccacctc-gcccccagtccccaccagttcaggctcagatg 857
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 89306228 tcctcctcctccaccagg-cccacctccgcccccagtccccaccagttcaggctcagatg 89306170
Query: 858 agtctgcctcacgctcagcactgtttgcgcagattaatcaaggggagagcatcacacacg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89306169 agtctgcctcacgctcagcactgtttgcgcagattaatcaaggggagagcatcacacacg 89306110
Score = 309 bits (156), Expect = 2e-81
Identities = 176/180 (97%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 739 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcgggtcc 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 89128048 ggggcccgtggctaaagaactgagtggattgccatctggaccctctgctggatcaggtcc 89127989
Query: 799 tcctcctcctccaccagggcccacctcg-cccccagtccccaccagttcaggctcagatg 857
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 89127988 tcctcctcctccaccagg-cccacctcctcccccagtccccaccagttcaggctcagatg 89127930
Query: 858 agtctgcctcacgctcagcactgtttgcgcagattaatcaaggggagagcatcacacacg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89127929 agtctgcctcacgctcagcactgtttgcgcagattaatcaaggggagagcatcacacacg 89127870
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 404 aataagctttctgaattgttggcacccatctccgagcagatccaagaagtaataaccttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89023930 aataagctttctgaattgttggcacccatctccgagcagatccaagaagtaataaccttt 89023989
Query: 464 cgggagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89023990 cgggagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatc 89024049
Query: 524 caggccctgggttgggtggctatgg 548
|||||||||||||||||||||||||
Sbjct: 89024050 caggccctgggttgggtggctatgg 89024074
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 407 aagctttctgaattgttggcacccatctccgagcagatccaagaagtaataacctttcgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309905 aagctttctgaattgttggcacccatctccgagcagatccaagaagtaataacctttcgg 89309846
Query: 467 gagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatccag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309845 gagaagaaccgaggcagcaagttgttcaatcacctgtcagctgtcagtgaaagcatccag 89309786
Query: 527 gccctgggttgggtggctatgg 548
||||||||||||||||||||||
Sbjct: 89309785 gccctgggttgggtggctatgg 89309764
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 104 aggtggtacattatggctgacatgcaaaatctggtagaaagattggagagagcagtgggc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89018687 aggtggtacattatggctgacatgcaaaatctggtagaaagattggagagagcagtgggc 89018746
Query: 164 cgcctggaggcagtctcccatgcctctgacacacactgtggatatggagacagtgctgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89018747 cgcctggaggcagtctcccatgcctctgacacacactgtggatatggagacagtgctgca 89018806
Query: 224 aaag 227
||||
Sbjct: 89018807 aaag 89018810
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ccgcgcccagtgagggcccggaagtgggtcgcgcgaagattgctgggcggttcttgccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89004574 ccgcgcccagtgagggcccggaagtgggtcgcgcgaagattgctgggcggttcttgccgg 89004633
Query: 61 aagtggagagcggctgatcgcagtcccgaggtgaggaactctgaggtg 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89004634 aagtggagagcggctgatcgcagtcccgaggtgaggaactctgaggtg 89004681
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 226 agcaggagcagctccgtatgtgcaagcatttgactcactgctggccggtcctgtggcgga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89019710 agcaggagcagctccgtatgtgcaagcatttgactcactgctggccggtcctgtggcgga 89019769
Query: 286 atacctcaagatcagtaaagagattgggggagatgtgcagaaacatg 332
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89019770 atacctcaagatcagtaaagagattgggggagatgtgcagaaacatg 89019816
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 634 ggataagaagcacgtggactgggtcaaagcttacttgagtatatggacagagctgcaggc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89307703 ggataagaagcacgtggactgggtcaaagcttacttgagtatatggacagagctgcaggc 89307644
Query: 694 ttacattaaggagttccatacgactggactggcctggagcaaaacgg 740
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89307643 ttacattaaggagttccatacgactggactggcctggagcaaaacgg 89307597
Score = 200 bits (101), Expect = 1e-48
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 917 gccctgaaacacgtatccgatgacatgaagactcacaaaacccctgcttttaaagctcga 976
|||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct: 89125791 gccctgaaacacgtatccgatgacatgaagactcacaagaaccctgctttgaaggctcag 89125732
Query: 977 agtgggcccgtccaaactggccccaaaccattctttgcatctaaacttgaaatcagccca 1036
||||||||||| | |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 89125731 agtgggcccgtacgaactggccccaaaccattctctgcatctaaacctggaatcagccca 89125672
Query: 1037 tcccccaaaccagtcccaaaaaaggaaccgcctctacttagactggagggcaa 1089
||||||||||||||| |||| ||||| || |||||||| ||||||||||||
Sbjct: 89125671 tcccccaaaccagtcacaaagaaggagccagctctacttgaactggagggcaa 89125619
Score = 200 bits (101), Expect = 1e-48
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 917 gccctgaaacacgtatccgatgacatgaagactcacaaaacccctgcttttaaagctcga 976
|||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||
Sbjct: 89304025 gccctgaaacacgtatccgatgacatgaagactcacaagaaccctgctttgaaggctcag 89303966
Query: 977 agtgggcccgtccaaactggccccaaaccattctttgcatctaaacttgaaatcagccca 1036
||||||||||| | |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 89303965 agtgggcccgtacgaactggccccaaaccattctctgcatctaaacctggaatcagccca 89303906
Query: 1037 tcccccaaaccagtcccaaaaaaggaaccgcctctacttagactggagggcaa 1089
||||||||||||||| |||| ||||| || |||||||| ||||||||||||
Sbjct: 89303905 tcccccaaaccagtcacaaagaaggagccagctctacttgaactggagggcaa 89303853
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 547 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89024174 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 89024233
Query: 607 ccgagtcctcaaggagtacaaagatgtg 634
||||||||||||||||||||||||||||
Sbjct: 89024234 ccgagtcctcaaggagtacaaagatgtg 89024261
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 547 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89309664 ggctcccaagcctggtccctatgtgaaggaaatgaatgatgctgccatgttttatacaaa 89309605
Query: 607 ccgagtcctcaaggagtacaaagatgtg 634
||||||||||||||||||||||||||||
Sbjct: 89309604 ccgagtcctcaaggagtacaaagatgtg 89309577
Score = 135 bits (68), Expect = 6e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 332 gcggaaatggtccatacaggtctgaagttggagcaaggtctcttggttacagcctctcag 391
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89021556 gcggaaatggtccatacaggtctgaagttggagcaagctctcttggttacagcctctcag 89021615
Query: 392 tgccagcagcct 403
||||||||||||
Sbjct: 89021616 tgccagcagcct 89021627
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,408,005
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 13
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)