Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 367 e-101
Alignment gi|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [B... 363 e-100
Alignment gi|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform... 363 e-100
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 355 8e-98
Alignment gi|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus]. 352 5e-97
Alignment gi|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus]. 306 3e-83
Alignment gi|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus]. 299 5e-81
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 259 6e-69
Alignment gi|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus]. 259 6e-69
Alignment gi|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos ... 221 2e-57
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [Bos taurus].
Length = 181
Score = 363 bits (933), Expect = e-100
Identities = 179/181 (98%), Positives = 180/181 (99%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVW VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWHVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LL+FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLLFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform 1 [Bos taurus].
Length = 181
Score = 363 bits (933), Expect = e-100
Identities = 179/181 (98%), Positives = 180/181 (99%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVW VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWHVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LL+FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLLFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 355 bits (911), Expect = 8e-98
Identities = 174/181 (96%), Positives = 177/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+NQL+N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus].
Length = 181
Score = 352 bits (904), Expect = 5e-97
Identities = 173/181 (95%), Positives = 175/181 (96%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGN+F LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLSNQL+NQ
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus].
Length = 180
Score = 306 bits (785), Expect = 3e-83
Identities = 149/177 (84%), Positives = 160/177 (90%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E EEL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>ref|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus].
Length = 180
Score = 299 bits (766), Expect = 5e-81
Identities = 145/177 (81%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG + LF +FGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LLVFANKQD+PNAM +E+TDKLGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 177
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 259 bits (662), Expect = 6e-69
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = +1
Query: 163 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 342
+FG KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQ
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 67
Query: 343 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 522
DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FANKQDLP
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 523 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 666
+AM EI +KLGL +R RNWY+Q +CATSGDGLYEGL WL++ ++
Sbjct: 128 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 259 bits (662), Expect = 6e-69
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = +1
Query: 163 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 342
+FG KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQ
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 67
Query: 343 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 522
DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FANKQDLP
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 523 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 666
+AM EI +KLGL +R RNWY+Q +CATSGDGLYEGL WL++ ++
Sbjct: 128 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos taurus].
Length = 181
Score = 221 bits (562), Expect = 2e-57
Identities = 103/181 (56%), Positives = 138/181 (76%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG F+++F LFG +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+R+ ++ EL+ ML E+ELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
L+VFANKQD+ AM +E+ + LGL +L+ R W I T AT G GL E ++WL L+++
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Query: 670 K 672
+
Sbjct: 181 Q 181
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,329,836
Number of extensions: 2206174
Number of successful extensions: 7551
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 7494
Number of HSP's successfully gapped: 57
Length of query: 661
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,074,782
Effective search space: 7769279664
Effective search space used: 7769279664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1... 369 e-102
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 355 9e-98
Alignment gi|XP_531820.1| PREDICTED: similar to ADP-ribosylation factor 1... 352 1e-96
Alignment gi|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2... 350 3e-96
Alignment gi|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2... 350 3e-96
Alignment gi|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3... 346 4e-95
Alignment gi|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2... 343 3e-94
Alignment gi|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4... 306 4e-83
Alignment gi|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5... 299 6e-81
Alignment gi|XP_858890.1| PREDICTED: similar to ADP-ribosylation factor 5... 275 9e-74
>ref|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1 [Canis familiaris].
Length = 215
Score = 369 bits (947), Expect(2) = e-102
Identities = 183/197 (92%), Positives = 186/197 (94%)
Frame = +1
Query: 82 GRRGFLWPVLLPPVYSMGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT 261
GR+GFLW VLLPPVYSMGNIFANL KGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
Sbjct: 19 GRQGFLWLVLLPPVYSMGNIFANLLKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT 78
Query: 262 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR 441
TIPTIGFNVETVE+KN SF VWDVGGQDKIRPLWRHYFQNT+GLIFVVDSNDRE VNEAR
Sbjct: 79 TIPTIGFNVETVEHKNTSFAVWDVGGQDKIRPLWRHYFQNTRGLIFVVDSNDREHVNEAR 138
Query: 442 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 621
EELMRMLAEDELRDAVLLVFANKQDL N MNAAEITDKLGLHSL HRNW IQATCATS D
Sbjct: 139 EELMRMLAEDELRDAVLLVFANKQDLRNTMNAAEITDKLGLHSLHHRNWCIQATCATSRD 198
Query: 622 GLYEGLDWLSNQLRNQK 672
GLYEGL WLSNQLRNQK
Sbjct: 199 GLYEGLAWLSNQLRNQK 215
Score = 23.9 bits (50), Expect(2) = e-102
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 32 ILWERNQRLPLTSSSAAAVEGF 97
+ WE+NQRL SSS A +GF
Sbjct: 3 VRWEQNQRL-AQSSSLAGRQGF 23
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 355 bits (911), Expect = 9e-98
Identities = 174/181 (96%), Positives = 177/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+NQL+N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_531820.1| PREDICTED: similar to ADP-ribosylation factor 1 [Canis familiaris].
Length = 181
Score = 352 bits (902), Expect = 1e-96
Identities = 174/181 (96%), Positives = 176/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKE+RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE+KN
Sbjct: 1 MGNIFANLFKGLFGKKEVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEHKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
SF VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 SSFAVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDL N MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL WLSNQLRNQ
Sbjct: 121 LLVFANKQDLRNTMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLAWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 1 [Canis
familiaris].
Length = 181
Score = 350 bits (898), Expect = 3e-96
Identities = 172/181 (95%), Positives = 174/181 (96%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGN+F LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLSNQL+ Q
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 2 [Canis
familiaris].
Length = 181
Score = 350 bits (898), Expect = 3e-96
Identities = 172/181 (95%), Positives = 174/181 (96%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGN+F LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLSNQL+ Q
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3 isoform 2 [Canis
familiaris].
Length = 187
Score = 346 bits (888), Expect = 4e-95
Identities = 173/187 (92%), Positives = 176/187 (94%), Gaps = 6/187 (3%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG------FNVE 291
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI FNVE
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIAEKVSSWFNVE 60
Query: 292 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 471
TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED
Sbjct: 61 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 120
Query: 472 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 651
ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+
Sbjct: 121 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLA 180
Query: 652 NQLRNQK 672
NQL+N+K
Sbjct: 181 NQLKNKK 187
>ref|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 3 [Canis
familiaris].
Length = 187
Score = 343 bits (881), Expect = 3e-94
Identities = 172/187 (91%), Positives = 174/187 (93%), Gaps = 6/187 (3%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG------FNVE 291
MGN+F LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG FNVE
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGQQCLAGFNVE 60
Query: 292 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 471
TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAED
Sbjct: 61 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAED 120
Query: 472 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 651
ELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLS
Sbjct: 121 ELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLS 180
Query: 652 NQLRNQK 672
NQL+ QK
Sbjct: 181 NQLKTQK 187
>ref|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4 isoform 2 [Canis
familiaris].
Length = 180
Score = 306 bits (785), Expect = 4e-83
Identities = 149/177 (84%), Positives = 160/177 (90%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E EEL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>ref|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5 isoform 1 [Canis
familiaris].
Length = 180
Score = 299 bits (766), Expect = 6e-81
Identities = 145/177 (81%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG + LF +FGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LLVFANKQD+PNAM +E+TDKLGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 177
>ref|XP_858890.1| PREDICTED: similar to ADP-ribosylation factor 5 isoform 2 [Canis
familiaris].
Length = 164
Score = 275 bits (704), Expect = 9e-74
Identities = 132/155 (85%), Positives = 142/155 (91%)
Frame = +1
Query: 196 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 375
VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYF
Sbjct: 7 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 66
Query: 376 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 555
QNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAVLLVFANKQD+PNAM +E+TDK
Sbjct: 67 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 126
Query: 556 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 127 LGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 161
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,478,967
Number of extensions: 2107461
Number of successful extensions: 7458
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 7411
Number of HSP's successfully gapped: 61
Length of query: 661
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 552
Effective length of database: 15,240,880
Effective search space: 8412965760
Effective search space used: 8412965760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens]. 367 e-101
Alignment gi|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens]. 367 e-101
Alignment gi|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens]. 367 e-101
Alignment gi|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens]. 367 e-101
Alignment gi|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens]. 355 9e-98
Alignment gi|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens]. 300 2e-81
Alignment gi|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens]. 299 6e-81
Alignment gi|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens]. 259 6e-69
Alignment gi|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sa... 221 1e-57
Alignment gi|NP_001647.1| E3 ubiquitin-protein ligase TRIM23 isoform alph... 216 5e-56
>ref|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens].
Length = 181
Score = 355 bits (911), Expect = 9e-98
Identities = 174/181 (96%), Positives = 177/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+NQL+N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens].
Length = 180
Score = 300 bits (769), Expect = 2e-81
Identities = 145/177 (81%), Positives = 159/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDRER+ E +EL +ML DELRDAV
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>ref|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens].
Length = 180
Score = 299 bits (766), Expect = 6e-81
Identities = 145/177 (81%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG + LF +FGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LLVFANKQD+PNAM +E+TDKLGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 177
>ref|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens].
Length = 175
Score = 259 bits (662), Expect = 6e-69
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = +1
Query: 163 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 342
+FG KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQ
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 67
Query: 343 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 522
DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FANKQDLP
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 523 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 666
+AM EI +KLGL +R RNWY+Q +CATSGDGLYEGL WL++ ++
Sbjct: 128 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sapiens].
Length = 181
Score = 221 bits (564), Expect = 1e-57
Identities = 103/181 (56%), Positives = 139/181 (76%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG F+++F LFG +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+R+ ++ EL+ ML E+ELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
L+VFANKQD+ AM ++E+ + LGL +L+ R W I T AT G GL E ++WL L+++
Sbjct: 121 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Query: 670 K 672
+
Sbjct: 181 Q 181
>ref|NP_001647.1| E3 ubiquitin-protein ligase TRIM23 isoform alpha [Homo sapiens].
Length = 574
Score = 216 bits (551), Expect = 5e-56
Identities = 103/164 (62%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Frame = +1
Query: 172 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 351
K E+R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 352 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 531
RPLW+HY+ NTQ ++FVVDS+ R+R++EA EL ++L E ELRDA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 532 NAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 660
+ EIT+ L LH L R+WYIQ A SG GLYEGLDWLS QL
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,363,449
Number of extensions: 2088730
Number of successful extensions: 7402
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 7325
Number of HSP's successfully gapped: 68
Length of query: 661
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,704,088
Effective search space: 8116656576
Effective search space used: 8116656576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 367 e-101
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 367 e-101
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 355 7e-98
Alignment gi|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus]. 352 5e-97
Alignment gi|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus]. 300 3e-81
Alignment gi|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus]. 299 5e-81
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 259 5e-69
Alignment gi|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus mus... 220 3e-57
Alignment gi|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculu... 216 4e-56
Alignment gi|NP_892039.1| ADP-ribosylation factor-like protein 5A [Mus mu... 187 2e-47
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 355 bits (911), Expect = 7e-98
Identities = 174/181 (96%), Positives = 177/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+NQL+N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus].
Length = 181
Score = 352 bits (904), Expect = 5e-97
Identities = 173/181 (95%), Positives = 175/181 (96%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGN+F LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLSNQL+NQ
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus].
Length = 180
Score = 300 bits (768), Expect = 3e-81
Identities = 146/177 (82%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E L +ML EDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>ref|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus].
Length = 180
Score = 299 bits (766), Expect = 5e-81
Identities = 145/177 (81%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG + LF +FGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LLVFANKQD+PNAM +E+TDKLGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 177
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 259 bits (662), Expect = 5e-69
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = +1
Query: 163 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 342
+FG KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQ
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 67
Query: 343 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 522
DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FANKQDLP
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 523 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 666
+AM EI +KLGL +R RNWY+Q +CATSGDGLYEGL WL++ ++
Sbjct: 128 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus musculus].
Length = 181
Score = 220 bits (561), Expect = 3e-57
Identities = 103/181 (56%), Positives = 138/181 (76%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG F+++F LFG +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+R+ ++ EL+ ML E+ELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
L+VFANKQD+ AM +E+ + LGL +L+ R W I T AT G GL E ++WL L+++
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Query: 670 K 672
+
Sbjct: 181 Q 181
>ref|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculus].
Length = 554
Score = 216 bits (551), Expect = 4e-56
Identities = 103/164 (62%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Frame = +1
Query: 172 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 351
K E+R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 382 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 441
Query: 352 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 531
RPLW+HY+ NTQ ++FVVDS+ R+R++EA EL ++L E ELRDA+LL+FANKQD+ A+
Sbjct: 442 RPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 501
Query: 532 NAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 660
+ EIT+ L LH L R+WYIQ A SG GLYEGLDWLS QL
Sbjct: 502 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545
>ref|NP_892039.1| ADP-ribosylation factor-like protein 5A [Mus musculus].
Length = 179
Score = 187 bits (476), Expect = 2e-47
Identities = 88/178 (49%), Positives = 127/178 (71%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG +F +++ LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNN 59
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
F +WD+GGQ+ +RP W Y+ NT+ +I VVDS DRER++ REEL +MLA ++LR A
Sbjct: 60 TRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 663
LL+FANKQD+ M AEI+ L L S++ W+IQA CA +G+GL +GL+W+ ++L+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,286,515
Number of extensions: 1779373
Number of successful extensions: 6041
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 5957
Number of HSP's successfully gapped: 56
Length of query: 661
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 553
Effective length of database: 12,373,671
Effective search space: 6842640063
Effective search space used: 6842640063
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 367 e-101
Alignment gi|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa]. 353 2e-97
Alignment gi|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa]. 350 1e-96
Alignment gi|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa]. 304 1e-82
Alignment gi|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa]. 299 3e-81
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 259 4e-69
Alignment gi|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus ... 221 2e-57
Alignment gi|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 217 2e-56
Alignment gi|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 217 2e-56
Alignment gi|XP_003359838.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 190 2e-48
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 367 bits (943), Expect = e-101
Identities = 181/181 (100%), Positives = 181/181 (100%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa].
Length = 181
Score = 353 bits (906), Expect = 2e-97
Identities = 173/181 (95%), Positives = 177/181 (97%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGNIF NL K L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK+
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKS 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL+NQL+N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 181
Score = 350 bits (899), Expect = 1e-96
Identities = 172/181 (95%), Positives = 174/181 (96%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MGN+F LFK LFGKKEMR LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRTLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RMLAEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
LLVF NKQDLPNAMNAAEITDKLGLHSLR RNWYIQATCATSGDGLYEGLDWLSNQL+NQ
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
Query: 670 K 672
K
Sbjct: 181 K 181
>ref|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 180
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>ref|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa].
Length = 180
Score = 299 bits (766), Expect = 3e-81
Identities = 145/177 (81%), Positives = 158/177 (89%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG + LF +FGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV E+ +EL +ML EDELRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 660
LLVFANKQD+PNAM +E+TDKLGL LR R WY+QATCAT G GLY+GLDWLS++L
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 177
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 259 bits (662), Expect = 4e-69
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = +1
Query: 163 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 342
+FG KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQ
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 67
Query: 343 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 522
DKIRPLWRHY+ TQGLIFVVD DR+R++EAR+EL R++ + E+RDA++L+FANKQDLP
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 523 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 666
+AM EI +KLGL +R RNWY+Q +CATSGDGLYEGL WL++ ++
Sbjct: 128 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus scrofa].
Length = 181
Score = 221 bits (562), Expect = 2e-57
Identities = 103/181 (56%), Positives = 138/181 (76%)
Frame = +1
Query: 130 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 309
MG F+++F LFG +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 310 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 489
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+R+ ++ EL+ ML E+ELR A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 490 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 669
L+VFANKQD+ AM +E+ + LGL +L+ R W I T AT G GL E ++WL L+++
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Query: 670 K 672
+
Sbjct: 181 Q 181
>ref|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like [Sus scrofa].
Length = 232
Score = 217 bits (552), Expect = 2e-56
Identities = 104/164 (63%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Frame = +1
Query: 172 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 351
K E+R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 60 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 119
Query: 352 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 531
RPLW+HY+ NTQ ++FVVDS+ R+RV+EA EL ++L E ELRDA+LL+FANKQD+ A+
Sbjct: 120 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 179
Query: 532 NAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 660
+ EIT+ L LH L R+WYIQ A SG GLYEGLDWLS QL
Sbjct: 180 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 223
>ref|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 1 [Sus
scrofa].
Length = 574
Score = 217 bits (552), Expect = 2e-56
Identities = 104/164 (63%), Positives = 130/164 (79%), Gaps = 1/164 (0%)
Frame = +1
Query: 172 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 351
K E+R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 352 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 531
RPLW+HY+ NTQ ++FVVDS+ R+RV+EA EL ++L E ELRDA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 532 NAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 660
+ EIT+ L LH L R+WYIQ A SG GLYEGLDWLS QL
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565
>ref|XP_003359838.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 2 [Sus
scrofa].
Length = 569
Score = 190 bits (483), Expect = 2e-48
Identities = 91/149 (61%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Frame = +1
Query: 172 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 351
K E+R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 352 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 531
RPLW+HY+ NTQ ++FVVDS+ R+RV+EA EL ++L E ELRDA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 532 NAAEITDKLGLHSL-RHRNWYIQATCATS 615
+ EIT+ L LH L R+WYIQ A S
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQGCDARS 550
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,084,638
Number of extensions: 1630305
Number of successful extensions: 4740
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 4699
Number of HSP's successfully gapped: 62
Length of query: 661
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,729,747
Effective search space: 4853739332
Effective search space used: 4853739332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007223
(1984 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2589 0.0
Sscrofa_Chr07 1600 0.0
Sscrofa_Chr14 1445 0.0
Sscrofa_ChrX 1372 0.0
Sscrofa_Chr06 670 0.0
Sscrofa_Chr12 285 5e-74
gb|JH118864.1| Sus scrofa unplaced genomic scaffold ChrUScaf2999 133 4e-28
Sscrofa_Chr18 129 6e-27
Sscrofa_Chr05 127 3e-26
Sscrofa_Chr01 80 5e-12
>Sscrofa_Chr02
|| Length = 162569375
Score = 2589 bits (1306), Expect = 0.0
Identities = 1320/1327 (99%)
Strand = Plus / Minus
Query: 511 caggaccttcccaatgccatgaatgcagccgagatcaccgacaagctgggcctacactct 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875886 caggaccttcccaatgccatgaatgcagccgagatcaccgacaagctgggcctacactct 53875827
Query: 571 ctgcgccacaggaactggtacattcaggccacctgtgccaccagtggtgatgggctctat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875826 ctgcgccacaggaactggtacattcaggccacctgtgccaccagtggtgatgggctctat 53875767
Query: 631 gagggactggactggctgtccaatcagctccggaaccagaagtgagctgtacacctctct 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875766 gagggactggactggctgtccaatcagctccggaaccagaagtgagctgtacacctctct 53875707
Query: 691 cctcccctctcactccctcttctacccttgctttactctcatgtggcaaacgtgcccctg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875706 cctcccctctcactccctcttctacccttgctttactctcatgtggcaaacgtgcccctg 53875647
Query: 751 tggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgctgtaa 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875646 tggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgctgtaa 53875587
Query: 811 atgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttccaat 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875586 atgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttccaat 53875527
Query: 871 gaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaagaaaa 930
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 53875526 gaggcagtttctggtactcctatgcaatattactcagctttttttattgtaaaaagaaaa 53875467
Query: 931 tcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagtcacg 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875466 tcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagtcacg 53875407
Query: 991 tgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccattttgg 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875406 tgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccattttgg 53875347
Query: 1051 tggttggtttttaacccaaactcagtgcattttttaaaaatagttacaaatacaagataa 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875346 tggttggtttttaacccaaactcagtgcattttttaaaaatagttacaaatacaagataa 53875287
Query: 1111 ggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcagtaatca 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875286 ggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcagtaatca 53875227
Query: 1171 cctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatggagcag 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875226 cctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatggagcag 53875167
Query: 1231 aaccagccatgatccattctgcatggtcacaataggatccctctgattggctctgtcttg 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875166 aaccagccatgatccattctgcatggtcacaataggatccctctgattggctctgtcttg 53875107
Query: 1291 ggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcccaggag 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875106 ggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcccaggag 53875047
Query: 1351 atggactggagctgcagccactgctcccagaccccttggaggaaccccagccttttcttg 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875046 atggactggagctgcagccactgctcccagaccccttggaggaaccccagccttttcttg 53874987
Query: 1411 agtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcagtcccct 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874986 agtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcagtcccct 53874927
Query: 1471 tgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtcatcctag 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874926 tgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtcatcctag 53874867
Query: 1531 agccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgcaggggt 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874866 agccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgcaggggt 53874807
Query: 1591 cagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataaacactg 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874806 cagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataaacactg 53874747
Query: 1651 aagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttatttggtg 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874746 aagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttatttggtg 53874687
Query: 1711 tcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtatacttgt 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874686 tcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtatacttgt 53874627
Query: 1771 tttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaatctctt 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53874626 tttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaatctctt 53874567
Query: 1831 aactatt 1837
|||||||
Sbjct: 53874566 aactatt 53874560
Score = 371 bits (187), Expect = 1e-99
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 92 ggtttctctggccagtgttgctcccaccagtctacagcatggggaatatctttgcaaacc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876645 ggtttctctggccagtgttgctcccaccagtctacagcatggggaatatctttgcaaacc 53876586
Query: 152 tcttcaagggcctttttggcaagaaagaaatgcgcattctcatggtgggtctagatgctg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876585 tcttcaagggcctttttggcaagaaagaaatgcgcattctcatggtgggtctagatgctg 53876526
Query: 212 cgggaaagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattccca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876525 cgggaaagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattccca 53876466
Query: 272 ctatagg 278
|||||||
Sbjct: 53876465 ctatagg 53876459
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 388 ggtctcatctttgtggtagatagtaatgacagagagcgtgtgaatgaggcccgagaggag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876167 ggtctcatctttgtggtagatagtaatgacagagagcgtgtgaatgaggcccgagaggag 53876108
Query: 448 ctcatgaggatgctggcagaagacgagctcagggacgctgttctgcttgtgtttgctaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876107 ctcatgaggatgctggcagaagacgagctcagggacgctgttctgcttgtgtttgctaac 53876048
Query: 508 aaacagg 514
|||||||
Sbjct: 53876047 aaacagg 53876041
Score = 228 bits (115), Expect = 9e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 276 aggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtgggacgtggg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876383 aggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtgggacgtggg 53876324
Query: 336 cggccaggacaagatccggccactgtggcgccactacttccagaacacgcagggt 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53876323 cggccaggacaagatccggccactgtggcgccactacttccagaacacgcagggt 53876269
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 aggcactgacgtggctgccgtcagagccgccatcttgtgggagcgaaaccaacgcctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53892532 aggcactgacgtggctgccgtcagagccgccatcttgtgggagcgaaaccaacgcctgcc 53892473
Query: 61 tctgaccagcagcagcgctgcggccgtcgagggt 94
||||||||||||||||||||||||||||||||||
Sbjct: 53892472 tctgaccagcagcagcgctgcggccgtcgagggt 53892439
>Sscrofa_Chr07
|| Length = 134764511
Score = 1600 bits (807), Expect = 0.0
Identities = 1023/1093 (93%), Gaps = 12/1093 (1%)
Strand = Plus / Plus
Query: 747 cctgtggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgct 806
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 47295348 cctgtggtgtgagtgccagaagctgtcgccatggtcagtcacagtgggcttcacgatgct 47295407
Query: 807 gtaaatgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttc 866
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 47295408 gtaaatgtgcagacacagcctgcacctgggtgtttatttaatgtaaatagtttttgtttc 47295467
Query: 867 caatgaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaag 926
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 47295468 caatgaggcagtttctggtactcctatgcaatattactcagctttttttattgtaaaaag 47295527
Query: 927 aaaatcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagt 986
|||| |||||| ||||| | |||||| |||||||||||||||||||| ||||| ||
Sbjct: 47295528 aaaa----cccactctttaggaatgagaagggattttaggcacacgggtcatctaggggt 47295583
Query: 987 cac-gtgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccat 1045
||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 47295584 cactgtgtcagacaggccccatcctcctcctctgggctttagatctgcgttgagatccat 47295643
Query: 1046 tttggtggttggtttttaacccaaactcagtgcattttttaaaaa-tagttacaaataca 1104
||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 47295644 tttggtggttggtttttaatccaaactcagtgcatttttaaaaaaatagttacaaataca 47295703
Query: 1105 agataaggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcag 1164
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 47295704 agataaggagaacacttgaatacacagcagggagaaatgtgcctggtgtaggttctgcag 47295763
Query: 1165 taatcacctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatg 1224
|||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 47295764 aaatcgcctgagtccagtccactggcggtctgtttcccgttgggaacatga-----aatg 47295818
Query: 1225 gagcagaaccagccatgatccattctgcatggtcacaataggatccctctgattggctct 1284
||||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 47295819 gagcagaaccagccacgatccattctgcacggtcacaataggatccctccgactggctct 47295878
Query: 1285 gtcttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcc 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 47295879 gtcttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacacagccacc 47295938
Query: 1345 caggagatggactggagctgcagccactgctcccagaccccttggaggaaccccagcctt 1404
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 47295939 caggagatggactggagctgcagccacggctcccagaccccttggaggaaccctagcctt 47295998
Query: 1405 ttcttgagtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcag 1464
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct: 47295999 ttcttgagtcaacatgggcactttggttggaacgatctggctggagtgggagccctgccg 47296058
Query: 1465 tccccttgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtca 1524
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 47296059 tccccttgcttgcctgctccgggctctctggggtctcaccggcaggagcatgggtggtca 47296118
Query: 1525 tcctagagccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgc 1584
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 47296119 tcggagagccccagccccttggaggccctgtctacatgtgctttcacgcccttagcctgc 47296178
Query: 1585 aggggtcagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataa 1644
||| ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 47296179 aggagtcaggtttgccattgaaaatgataacctgcacgtttttcttttgtattttgataa 47296238
Query: 1645 acactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttat 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47296239 acactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggcttat 47296298
Query: 1705 ttggtgtcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtat 1764
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 47296299 ttggtgtcgtggaacctcttactgctttcaatacatgattagtaatcaactgttttgtac 47296358
Query: 1765 acttgttttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaa 1824
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47296359 a-ttgttttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaa 47296417
Query: 1825 tctcttaactatt 1837
|||||||||||||
Sbjct: 47296418 tctcttaactatt 47296430
Score = 1568 bits (791), Expect = 0.0
Identities = 1019/1093 (93%), Gaps = 12/1093 (1%)
Strand = Plus / Minus
Query: 747 cctgtggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgct 806
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 47138843 cctgtggtgtgagtgccagaagctgtctccatggtcagtcacagtgggcttcacgatgct 47138784
Query: 807 gtaaatgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttc 866
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 47138783 gtaaatgtgcagacacagcctgcacctgggtgtttatttaatgtaaatagtttttgtttc 47138724
Query: 867 caatgaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaag 926
||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 47138723 caatgaggcagtttctggtactcctatgcaatattactcggctttttttattgtaaaaag 47138664
Query: 927 aaaatcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagt 986
|||| |||||| ||||| | |||||| |||||||||||||||||||| ||||| ||
Sbjct: 47138663 aaaa----cccactctttaggaatgagaagggattttaggcacacgggtcatctaggggt 47138608
Query: 987 cac-gtgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccat 1045
||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 47138607 cactgtgtcagacaggccccatcctcctcctctgggctttagatctgcgttgagatccat 47138548
Query: 1046 tttggtggttggtttttaacccaaactcagtgcatttttta-aaaatagttacaaataca 1104
||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct: 47138547 tttggtggttggtttttaatccaaactcagtgcatttttaagaaaatagttacaaataca 47138488
Query: 1105 agataaggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcag 1164
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 47138487 agataaggagaacacttgaatacacagcagggagaaatgtgcctggtgtaggttctgcag 47138428
Query: 1165 taatcacctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatg 1224
|||| ||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 47138427 aaatcgcctgagtccagtccactggcggtctgtttcccgttgggaacatgaaatg----- 47138373
Query: 1225 gagcagaaccagccatgatccattctgcatggtcacaataggatccctctgattggctct 1284
||||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 47138372 gagcagaaccagccacgatccattctgcacggtcacaataggatccctccgactggctct 47138313
Query: 1285 gtcttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcc 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 47138312 gtcttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacacagccacc 47138253
Query: 1345 caggagatggactggagctgcagccactgctcccagaccccttggaggaaccccagcctt 1404
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 47138252 caggagatggactggagctgcagccacggctcccagaccccttggaggaaccttagcctt 47138193
Query: 1405 ttcttgagtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcag 1464
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct: 47138192 ttcttgagtcaacatgggcactttggttggaacgatctggctggagtgggagccctgccg 47138133
Query: 1465 tccccttgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtca 1524
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 47138132 tccccttgcttgcctgctccgggctctctggggtctcaccggcaggagcatgggtggtca 47138073
Query: 1525 tcctagagccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgc 1584
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 47138072 tcggagagccccagccccttggaggccctgtctacatgtgctttcacgcccttagcctgc 47138013
Query: 1585 aggggtcagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataa 1644
||| ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 47138012 aggagtcaggtttgccattgaaaatgataacctgcacgtttttcttttgtattttgataa 47137953
Query: 1645 acactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttat 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 47137952 acactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggcttat 47137893
Query: 1705 ttggtgtcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtat 1764
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 47137892 ttggtgttgtggaacctcttactgctttcaatacatgattagtaatcaactgttttgtac 47137833
Query: 1765 acttgttttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaa 1824
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 47137832 a-ttgttttcagtattcatttcgacaaacaagcactgtaattacagttattagaataaaa 47137774
Query: 1825 tctcttaactatt 1837
|||||||||||||
Sbjct: 47137773 tctcttaactatt 47137761
>Sscrofa_Chr14
|| Length = 153851969
Score = 1445 bits (729), Expect = 0.0
Identities = 1176/1321 (89%), Gaps = 22/1321 (1%)
Strand = Plus / Minus
Query: 36 tgtgggagcgaaaccaacgcctgcctctgaccagcagcagcgctgc---ggccgtcgagg 92
||||||||| |||||||||||||||||||| |||||||||| | | ||||||| |||
Sbjct: 26855401 tgtgggagcaaaaccaacgcctgcctctgagcagcagcagcagtaccatggccgtcaagg 26855342
Query: 93 gtttctctggccagtgttgctcccaccagtctacagcatggggaat-atctttgcaaacc 151
|||||||||||||||| |||||||| | ||||||||||||||| || |||||||||||||
Sbjct: 26855341 gtttctctggccagtgatgctcccagcggtctacagcatgggggatcatctttgcaaacc 26855282
Query: 152 tcttcaagggcctttttggcaagaaagaaatgcgcattctcatggtgggtctagatgctg 211
|||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 26855281 tcttcaagagcctttttgggaagacggaaatgcgtattctcatggtgggtctagatgctg 26855222
Query: 212 cgggaaagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattccca 271
| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 26855221 caggaaagaccaccatcctgtacaaactgaagctgggggaaaacgtgaccaccattcctg 26855162
Query: 272 ctataggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtgggacg 331
|| ||||||||||||||| || |||||| | ||| ||||||||||||||||||| ||
Sbjct: 26855161 ctccaggcttcaacgtggagactgtggagcatgagagtatcagcttcaccgtgtgggtcg 26855102
Query: 332 tgggcggccaggacaagatccggccactgtggcgccactacttccagaacacgcagggtc 391
|||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| |||
Sbjct: 26855101 agggcggccaggacaagatccggccactgtgacgccactccttccagcacatgcaatgtc 26855042
Query: 392 tcatctttgtggtagatagtaatgacagagagcgtgtgaatgaggcccgagaggagctca 451
||||||||| || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 26855041 tcatctttgcagttaatggtaatgacagagagcgtgtgaaggaggcccgagaggagctca 26854982
Query: 452 tgaggatgctggcagaagacgagctcagggacgctgttctgcttgtgtttgctaacaaac 511
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 26854981 tgaggatgctggcagacgacgagctcagagacgctgttctgctcatgtttgctaacaaac 26854922
Query: 512 aggaccttcccaatgccatgaatgcagccgagatcaccgacaagctgggcctacactctc 571
|| | ||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 26854921 agaagtgccccgatgccatgaatgcagctgagatcactgacaagctgggcctacactctc 26854862
Query: 572 tgcgccacaggaactggtacattcaggccacctgtgccaccagtggtgatgggctctatg 631
|||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||
Sbjct: 26854861 tgcgccacaggaactggtacctccagtccacctgtgccaccagtggtgataggctctatg 26854802
Query: 632 agggactggactggctgtccaatcagctccggaaccagaagtgagctgtacacctctctc 691
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 26854801 agggactggactggctgtgccatcagctccggaaccagaagtgagctgtactcctctctc 26854742
Query: 692 ctcccctctcactccct-cttctacccttgctttactctcatgtggcaaacgtgcccctg 750
||||||||||||||||| |||| ||||| ||||||| |||| ||||||||||||||||||
Sbjct: 26854741 ctcccctctcactccctccttccaccctcgctttacgctcaggtggcaaacgtgcccctg 26854682
Query: 751 tggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgctgtaa 810
|||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 26854681 tggtgtgagtgccagacgctgtctccgtggacagtcacagtgtgcttcaacatgctgtaa 26854622
Query: 811 atgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttccaat 870
||||||| || |||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct: 26854621 atgtgcaaacacagcctgcaattgg---attatttaatgtaaatagtttttgcttccaat 26854565
Query: 871 gaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaagaaaa 930
||||| |||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 26854564 gaggccgtttctggtactcctatgcaatgttactcagc-ttttttattgtaaaaagaaaa 26854506
Query: 931 tcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagtcac- 989
||| ||||||||||| |||||||| | |||||||||||||||||| ||||| || |||
Sbjct: 26854505 ccaagccactgtttagcactgagaaggaattttaggcacacgggtcatctaggagccact 26854446
Query: 990 gtgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccattttg 1049
||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 26854445 gtgtcagacagacccaatcctccttctctgggctttagatctgtgttaatatccatt--- 26854389
Query: 1050 gtggttggtttttaacccaaactcagtgcattttttaaaaatagttacaaatacaagata 1109
|| |||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 26854388 ----tttgtttttaacccaaactcagtgcatttttaaaaaatagttgcaaatacaagata 26854333
Query: 1110 aggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcagtaatc 1169
|||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 26854332 aggagaacacttgaacacccagcagggagaaatgcgcctagtgtaggttctgcagtaatg 26854273
Query: 1170 acctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatggagca 1229
|||||||||||||||||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 26854272 gcctgagtccagtccactggtggtctgatgcccgttgggaac-----atgaaatggagca 26854218
Query: 1230 gaaccagccatgatccattctgcatggtcacaataggatccctctgattggctctgtctt 1289
|||| ||||||||||||| |||||||||||| | |||| ||| |||||| ||||| |||
Sbjct: 26854217 gaactagccatgatccatgctgcatggtcaccacaggaacccgctgattcgctctatctc 26854158
Query: 1290 gggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcccagga 1349
| || ||||||||||| | | ||||||||||||||||||||||| |||||||||||||
Sbjct: 26854157 tgctccccccacaccccactacatttttgcttgtatttgtgctcacttggccgcccagga 26854098
Query: 1350 g 1350
|
Sbjct: 26854097 g 26854097
Score = 597 bits (301), Expect = e-168
Identities = 355/373 (95%)
Strand = Plus / Minus
Query: 1381 accccttggaggaaccccagccttttcttgagtcaacatgggcaccttggttggaacact 1440
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 26854086 accccttggaggaatcccagccttttcttgagtcaacatgggcactttggttggaacgct 26854027
Query: 1441 ctggctggagcgggagccctgcagtccccttgcttgcctgctccgggctctctggggtct 1500
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 26854026 ctggctggagcggaagccttgcagtccccttgctggcctgctccgggctctctggggtct 26853967
Query: 1501 caccagcaggagcatgggtggtcatcctagagccccagccccttggagcccctgtctaca 1560
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26853966 caccagcggaagcatgggtggtcatcctagagccccagccccttggagcccctgtctaca 26853907
Query: 1561 tgtgctttcacgcccttagcctgcaggggtcagatttgccatcgaaaatgataacctcta 1620
|| |||||||| ||| |||| |||||||| ||||||||||||||||||||| ||||||
Sbjct: 26853906 tgggctttcacttcctcagcccacaggggtcggatttgccatcgaaaatgatatcctcta 26853847
Query: 1621 cttttttcttttgtattttgataaacactgaagaagctggagctgttaaactttatcttg 1680
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 26853846 cttttttcttttgtattttgataaacactgaagaagctggagctgttaaattttatcttg 26853787
Query: 1681 gggaaaacctcagaactggtttatttggtgtcgtggaacctcttactgctttcaatacac 1740
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26853786 gggaaaacctcagaactggtttatttggtgttgtggaacctcttactgctttcaatacac 26853727
Query: 1741 gattagtaatcaa 1753
|||||||||||||
Sbjct: 26853726 gattagtaatcaa 26853714
>Sscrofa_ChrX
|| Length = 144288218
Score = 1372 bits (692), Expect = 0.0
Identities = 1488/1752 (84%), Gaps = 69/1752 (3%)
Strand = Plus / Plus
Query: 89 gagggtttctctggccagtgttgctcccaccagtctacagcatggggaatatctttgcaa 148
|||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||| ||
Sbjct: 71200413 gagggtttctctggacagagctgctcccaccagtatacagcatggggaatatctttggaa 71200472
Query: 149 acctcttcaagggcctttttggcaagaaagaaatgcgcattctcatggtgggtctagatg 208
|||||||| ||||| |||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 71200473 acctcttcgagggcttttttgacaagaaagaaatgcgcattctcatggcaggactagatg 71200532
Query: 209 ctgcgggaaagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattc 268
|| | ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 71200533 cttcaggaaagaccaccatcctgtacaaactggggctgggtgaaattgtgaccataattc 71200592
Query: 269 ccactataggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtggg 328
|||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||
Sbjct: 71200593 ccactataggcttctacgtggagactgtggagtacaagaacataagcttcaccaggtggg 71200652
Query: 329 acgtgggcggccaggacaagatccggccactgtggcgccactacttccagaacacgcagg 388
|| || || ||||||||||||||| ||| |||||| || |||||||||||||||||| |
Sbjct: 71200653 acatgagcagccaggacaagatccagcctctgtggtgctgctacttccagaacacgcaag 71200712
Query: 389 gtctcatctttgtggtagatagtaatgacagagagcgtgtgaatgaggcccgagaggagc 448
| ||||||||| |||| || |||||| ||| ||||||| || | | ||||||||
Sbjct: 71200713 ggctcatctttatggttcatggtaatgg----gagtgtgtgaacgaagacaaagaggagc 71200768
Query: 449 tcatgaggatgctggcagaagacgagctcagggacgctgttctgcttgtgtttgctaaca 508
|||||||||||||| ||||||| | ||||||||| ||||||| ||||||||||||||||
Sbjct: 71200769 tcatgaggatgctgacagaagattaactcagggacactgttctccttgtgtttgctaaca 71200828
Query: 509 aacaggaccttcccaatgccatgaatgcagccgagatcaccgacaagctgggcctacact 568
|||| ||||| ||||||||||||||||||||| ||||| | |||| |||||||||| ||
Sbjct: 71200829 aacatgacctccccaatgccatgaatgcagccaagatccctgacaggctgggcctatacc 71200888
Query: 569 ctctgcgccacaggaactggtacattcaggccacctgtgccaccagtggtgatgggctct 628
|||||| |||||||||||||||||||||||| ||||||||||| || |||| | |||
Sbjct: 71200889 ctctgcaccacaggaactggtacattcaggctacctgtgccactagcaaagatgagttct 71200948
Query: 629 atgagggactggactggctgtccaatcagctccggaaccagaagtgagctgtacacctct 688
|| |||||||||||||||| |||| ||||||| ||||| ||||||||||||||| ||||
Sbjct: 71200949 ataagggactggactggctatccattcagctctggaacaagaagtgagctgtac--ctct 71201006
Query: 689 ctcctcccctctcactccctc-ttctacccttgctttactctcatgtggcaaacgtgccc 747
|||| | |||||||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 71201007 ctcccc-----tcactccctccttctaccttcactttactctcatgtggcaaacatgccc 71201061
Query: 748 ctgtggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgctg 807
|||||||||| ||||||||| ||||||||||||| |||||| | || ||||||||||||
Sbjct: 71201062 ctgtggtgtgtgtgccagaatctgtctccatggtgggtcacaatatgtttcaccatgctg 71201121
Query: 808 taaatgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttcc 867
||||||| |||| ||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 71201122 aaaatgtgtagacacagcctgcaactgag---ttgtttaatgtaaatagtttttgtttca 71201178
Query: 868 aatgaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaaga 927
||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||
Sbjct: 71201179 aatgaggcagtttctggtactaccatgcaatattacttagctttttttattgtaaaaaga 71201238
Query: 928 aaatcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagtc 987
|||||||||||||| ||||| ||| || ||||||||||||||| |||| |||||||||
Sbjct: 71201239 aaatcaacccactg-ctagtattgaaaagggattttaggcacacaggtcatctagaagtt 71201297
Query: 988 ac-gtgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccatt 1046
|| || |||||||| |||||| | ||||| || ||||||| ||||||||||||| ||||
Sbjct: 71201298 actgttccagacaggtccaatctttctcctatgagctttagctctgtgttgagat-catt 71201356
Query: 1047 ttggtggttggtttttaacccaaactcagtgcattttttaaaaatagttacaaatacaag 1106
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71201357 ttggttgttggtttttaacccaaactcagtgcatttttt-aaaatagttacaaatacaag 71201415
Query: 1107 ataaggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcagta 1166
||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71201416 ataagga--------gaacacacagaagggagaaatatgcctagtgtaggttctgcagta 71201467
Query: 1167 atcacctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatgga 1226
|| ||| ||| |||||||| ||||||||||||||||||||||| |||||| |
Sbjct: 71201468 atggcctaagttcagtccaccagtggtctgtttcccattgggaac-----atgaaacagg 71201522
Query: 1227 gcagaaccagccatgatccattctgcatggtcacaataggatccctctgattggctctgt 1286
||| |||| ||||||| ||||||| ||||||||| | |||||||| ||||| | ||||
Sbjct: 71201523 gcaaaacctgccatgactcattctggatggtcacagtgggatccctgtgattcacactgt 71201582
Query: 1287 cttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgccca 1346
|| ||||||| | ||| |||||| ||| |||||||||||||||| ||| || ||| |
Sbjct: 71201583 ctcaggtcatcaaagaccacattgcatttgtgcttgtatttgtgcttacacagcagccaa 71201642
Query: 1347 ggagatggactgga-gctgcagccactgctcccagaccccttggaggaaccccagccttt 1405
|||||||| | ||| ||||||| | | |||||| ||| || |||||||||| |||
Sbjct: 71201643 taagatggacaaaaggcttcagccaccacactcagacctcttaga-gaaccccagctttt 71201701
Query: 1406 tcttgagtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcagt 1465
||||| |||| ||||||||| |||||||||||||||||| |||||||
Sbjct: 71201702 tcttgggtcatcatgggcactttggttggaacactctgg--------------ctgcagt 71201747
Query: 1466 ccccttgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtcat 1525
||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 71201748 ccccttgcttgcctgctcctggctttctgaggtctcaccagcaggagcaggggtggtcat 71201807
Query: 1526 cctagagccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgca 1585
|| ||||||||||||||||||||||| ||||||||| | ||||||| || | |||||| |
Sbjct: 71201808 cccagagccccagccccttggagcccttgtctacatatcctttcactccatcagcctgaa 71201867
Query: 1586 ggggtcagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataaa 1645
|||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 71201868 agggtcagatttgtcattgaaaattataacctctacttttttcttttgt----------- 71201916
Query: 1646 cactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttatt 1705
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71201917 ------agcaactggagctattaaactttatcttggggaaaacctcagaactggtttatt 71201970
Query: 1706 tggtgtcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtata 1765
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 71201971 tagtgtcatggaacctcttactgctttcaatacacgactagtaatcaactgttttgtgta 71202030
Query: 1766 cttgttttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaat 1825
|||||||| |||||| |||| | |||||||||||||||||||||| || ||||||||
Sbjct: 71202031 cttgttttaagttttaattttg----acaagcactgtaattacagctaataaaataaaat 71202086
Query: 1826 ctcttaactatt 1837
||||||||||||
Sbjct: 71202087 ctcttaactatt 71202098
Score = 1372 bits (692), Expect = 0.0
Identities = 1488/1752 (84%), Gaps = 69/1752 (3%)
Strand = Plus / Minus
Query: 89 gagggtttctctggccagtgttgctcccaccagtctacagcatggggaatatctttgcaa 148
|||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||| ||
Sbjct: 71447814 gagggtttctctggacagagctgctcccaccagtatacagcatggggaatatctttggaa 71447755
Query: 149 acctcttcaagggcctttttggcaagaaagaaatgcgcattctcatggtgggtctagatg 208
|||||||| ||||| |||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 71447754 acctcttcgagggcttttttgacaagaaagaaatgcgcattctcatggcaggactagatg 71447695
Query: 209 ctgcgggaaagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattc 268
|| | ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 71447694 cttcaggaaagaccaccatcctgtacaaactggggctgggtgaaattgtgaccataattc 71447635
Query: 269 ccactataggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtggg 328
|||||||||||||| ||||||| || ||||||||||||||||| ||||||||| |||||
Sbjct: 71447634 ccactataggcttctacgtggagactgtggagtacaagaacataagcttcaccaggtggg 71447575
Query: 329 acgtgggcggccaggacaagatccggccactgtggcgccactacttccagaacacgcagg 388
|| || || ||||||||||||||| ||| |||||| || |||||||||||||||||| |
Sbjct: 71447574 acatgagcagccaggacaagatccagcctctgtggtgctgctacttccagaacacgcaag 71447515
Query: 389 gtctcatctttgtggtagatagtaatgacagagagcgtgtgaatgaggcccgagaggagc 448
| ||||||||| |||| || |||||| ||| ||||||| || | | ||||||||
Sbjct: 71447514 ggctcatctttatggttcatggtaatgg----gagtgtgtgaacgaagacaaagaggagc 71447459
Query: 449 tcatgaggatgctggcagaagacgagctcagggacgctgttctgcttgtgtttgctaaca 508
|||||||||||||| ||||||| | ||||||||| ||||||| ||||||||||||||||
Sbjct: 71447458 tcatgaggatgctgacagaagattaactcagggacactgttctccttgtgtttgctaaca 71447399
Query: 509 aacaggaccttcccaatgccatgaatgcagccgagatcaccgacaagctgggcctacact 568
|||| ||||| ||||||||||||||||||||| ||||| | |||| |||||||||| ||
Sbjct: 71447398 aacatgacctccccaatgccatgaatgcagccaagatccctgacaggctgggcctatacc 71447339
Query: 569 ctctgcgccacaggaactggtacattcaggccacctgtgccaccagtggtgatgggctct 628
|||||| |||||||||||||||||||||||| ||||||||||| || |||| | |||
Sbjct: 71447338 ctctgcaccacaggaactggtacattcaggctacctgtgccactagcaaagatgagttct 71447279
Query: 629 atgagggactggactggctgtccaatcagctccggaaccagaagtgagctgtacacctct 688
|| |||||||||||||||| |||| ||||||| ||||| ||||||||||||||| ||||
Sbjct: 71447278 ataagggactggactggctatccattcagctctggaacaagaagtgagctgtac--ctct 71447221
Query: 689 ctcctcccctctcactccctc-ttctacccttgctttactctcatgtggcaaacgtgccc 747
|||| | |||||||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 71447220 ctcccc-----tcactccctccttctaccttcactttactctcatgtggcaaacatgccc 71447166
Query: 748 ctgtggtgtgagtgccagaagctgtctccatggtcagtcacagtgtgcttcaccatgctg 807
|||||||||| ||||||||| ||||||||||||| |||||| | || ||||||||||||
Sbjct: 71447165 ctgtggtgtgtgtgccagaatctgtctccatggtgggtcacaatatgtttcaccatgctg 71447106
Query: 808 taaatgtgcagacgcagcctgcaactgggtttttatttaatgtaaatagtttttgtttcc 867
||||||| |||| ||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 71447105 aaaatgtgtagacacagcctgcaactgag---ttgtttaatgtaaatagtttttgtttca 71447049
Query: 868 aatgaggcagtttctggtactcctatgcaatattactcagcnnnnnnnattgtaaaaaga 927
||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||
Sbjct: 71447048 aatgaggcagtttctggtactaccatgcaatattacttagctttttttattgtaaaaaga 71446989
Query: 928 aaatcaacccactgtttagtactgagaaaggattttaggcacacgggtcctctagaagtc 987
|||||||||||||| ||||| ||| || ||||||||||||||| |||| |||||||||
Sbjct: 71446988 aaatcaacccactg-ctagtattgaaaagggattttaggcacacaggtcatctagaagtt 71446930
Query: 988 ac-gtgtcagacaggcccaatcctcctcctctgggctttagatctgtgttgagatccatt 1046
|| || |||||||| |||||| | ||||| || ||||||| ||||||||||||| ||||
Sbjct: 71446929 actgttccagacaggtccaatctttctcctatgagctttagctctgtgttgagat-catt 71446871
Query: 1047 ttggtggttggtttttaacccaaactcagtgcattttttaaaaatagttacaaatacaag 1106
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71446870 ttggttgttggtttttaacccaaactcagtgcatttttt-aaaatagttacaaatacaag 71446812
Query: 1107 ataaggagaacacttgaacacacagaagggagaaatgtgcctagtgtaggttctgcagta 1166
||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71446811 ataagga--------gaacacacagaagggagaaatatgcctagtgtaggttctgcagta 71446760
Query: 1167 atcacctgagtccagtccactggtggtctgtttcccattgggaacatgaaatgaaatgga 1226
|| ||| ||| |||||||| ||||||||||||||||||||||| |||||| |
Sbjct: 71446759 atggcctaagttcagtccaccagtggtctgtttcccattgggaac-----atgaaacagg 71446705
Query: 1227 gcagaaccagccatgatccattctgcatggtcacaataggatccctctgattggctctgt 1286
||| |||| ||||||| ||||||| ||||||||| | |||||||| ||||| | ||||
Sbjct: 71446704 gcaaaacctgccatgactcattctggatggtcacagtgggatccctgtgattcacactgt 71446645
Query: 1287 cttgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgccca 1346
|| ||||||| | ||| |||||| ||| |||||||||||||||| ||| || ||| |
Sbjct: 71446644 ctcaggtcatcaaagaccacattgcatttgtgcttgtatttgtgcttacacagcagccaa 71446585
Query: 1347 ggagatggactgga-gctgcagccactgctcccagaccccttggaggaaccccagccttt 1405
|||||||| | ||| ||||||| | | |||||| ||| || |||||||||| |||
Sbjct: 71446584 taagatggacaaaaggcttcagccaccacactcagacctcttaga-gaaccccagctttt 71446526
Query: 1406 tcttgagtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcagt 1465
||||| |||| ||||||||| |||||||||||||||||| |||||||
Sbjct: 71446525 tcttgggtcatcatgggcactttggttggaacactctgg--------------ctgcagt 71446480
Query: 1466 ccccttgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtcat 1525
||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 71446479 ccccttgcttgcctgctcctggctttctgaggtctcaccagcaggagcaggggtggtcat 71446420
Query: 1526 cctagagccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgca 1585
|| ||||||||||||||||||||||| ||||||||| | ||||||| || | |||||| |
Sbjct: 71446419 cccagagccccagccccttggagcccttgtctacatatcctttcactccatcagcctgaa 71446360
Query: 1586 ggggtcagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataaa 1645
|||||||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 71446359 agggtcagatttgtcattgaaaattataacctctacttttttcttttgt----------- 71446311
Query: 1646 cactgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttatt 1705
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71446310 ------agcaactggagctattaaactttatcttggggaaaacctcagaactggtttatt 71446257
Query: 1706 tggtgtcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtata 1765
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 71446256 tagtgtcatggaacctcttactgctttcaatacacgactagtaatcaactgttttgtgta 71446197
Query: 1766 cttgttttcagttttcatttcgacaaacaagcactgtaattacagctattagaataaaat 1825
|||||||| |||||| |||| | |||||||||||||||||||||| || ||||||||
Sbjct: 71446196 cttgttttaagttttaattttg----acaagcactgtaattacagctaataaaataaaat 71446141
Query: 1826 ctcttaactatt 1837
||||||||||||
Sbjct: 71446140 ctcttaactatt 71446129
>Sscrofa_Chr06
|| Length = 157765593
Score = 670 bits (338), Expect = 0.0
Identities = 446/482 (92%)
Strand = Plus / Minus
Query: 1289 tgggtcatcccacaccccattgcgtttttgcttgtatttgtgctcacatggccgcccagg 1348
|||||||||||| ||| || || |||||||||||||||| |||||||| || | |||||
Sbjct: 110627074 tgggtcatcccataccacactgtgtttttgcttgtatttatgctcacacagcagaccagg 110627015
Query: 1349 agatggactggagctgcagccactgctcccagaccccttggaggaaccccagccttttct 1408
|||| |||| ||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct: 110627014 agatagactagagctgcagccaccgctctcagaccccttggaggaaccctggccttttct 110626955
Query: 1409 tgagtcaacatgggcaccttggttggaacactctggctggagcgggagccctgcagtccc 1468
|||||||||||| |||| ||||||||||| |||||||||||| | ||||||||||| ||
Sbjct: 110626954 tgagtcaacatgtgcactttggttggaacgctctggctggagtgaaagccctgcagttcc 110626895
Query: 1469 cttgcttgcctgctccgggctctctggggtctcaccagcaggagcatgggtggtcatcct 1528
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 110626894 cttgcttgcctgctccaggctctctgggttctcaccagcaggagcatgggtggtcatcct 110626835
Query: 1529 agagccccagccccttggagcccctgtctacatgtgctttcacgcccttagcctgcaggg 1588
||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 110626834 agagccccatcccttcggagcacctgtctacatgtgctttcatgccctcagcctgcaggg 110626775
Query: 1589 gtcagatttgccatcgaaaatgataacctctacttttttcttttgtattttgataaacac 1648
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110626774 gttagatttgccatcaaaaatgataacctctacttttttcttttgtattttgataaacac 110626715
Query: 1649 tgaagaagctggagctgttaaactttatcttggggaaaacctcagaactggtttatttgg 1708
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 110626714 tgaagaagctggagctgttaaactttaccttggggtaaacctcagaactggtttatttgg 110626655
Query: 1709 tgtcgtggaacctcttactgctttcaatacacgattagtaatcaactgttttgtatactt 1768
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 110626654 tgtcatggaacctcttactgctttcaatacacgattagtaatcaactgtttcgtatactt 110626595
Query: 1769 gt 1770
||
Sbjct: 110626594 gt 110626593
>Sscrofa_Chr12
|| Length = 63588571
Score = 285 bits (144), Expect = 5e-74
Identities = 180/192 (93%)
Strand = Plus / Minus
Query: 1441 ctggctggagcgggagccctgcagtccccttgcttgcctgctccgggctctctggggtct 1500
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 20500082 ctggctgcagcgggagccctgcagtccccttgcttgcctgctctgggttctctggggtct 20500023
Query: 1501 caccagcaggagcatgggtggtcatcctagagccccagccccttggagcccctgtctaca 1560
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 20500022 caccagcaggagcatgggtggtcatcctagagccccagcccctcggagcccctgtctgca 20499963
Query: 1561 tgtgctttcacgcccttagcctgcaggggtcagatttgccatcgaaaatgataacctcta 1620
|||| | |||| |||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 20499962 tgtgttctcactccctcagcctgcaggagtcagatttgccatagaaaatgataacctcta 20499903
Query: 1621 cttttttctttt 1632
||||||| ||||
Sbjct: 20499902 cttttttttttt 20499891
Score = 192 bits (97), Expect = 5e-46
Identities = 131/141 (92%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 1611 ataacctctacttttttcttttgtattttgataaacactgaagaagctggagctgttaaa 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 20499331 ataacctctacttttttcttttgtattttgataaacactgaagaagctggagctgctcaa 20499272
Query: 1671 ctttatcttgggg-aaaacctcagaactggtttatttggtgtcgtggaacctcttactgc 1729
|||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct: 20499271 ttttatcttggggaaaaacctcagaaatggtttatttggtgtcctggaatctcttactgc 20499212
Query: 1730 tttcaatacacgattagtaat 1750
|||||||| | | ||||||||
Sbjct: 20499211 tttcaatatatggttagtaat 20499191
>gb|JH118864.1| Sus scrofa unplaced genomic scaffold ChrUScaf2999
Length = 59361
Score = 133 bits (67), Expect = 4e-28
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1641 ataaacactgaagaagctggagctgttaaactttatcttggggaaaa-cctcagaactgg 1699
||||||||||||||||||||||||| | || |||||||||||||||| |||||||| |||
Sbjct: 978 ataaacactgaagaagctggagctgctcaattttatcttggggaaaaacctcagaaatgg 919
Query: 1700 tttatttggtgtcgtggaacctcttactgctttcaatacacgattagtaat 1750
||||||||||||| ||||| |||||||||||||||||| | | ||||||||
Sbjct: 918 tttatttggtgtcctggaatctcttactgctttcaatatatggttagtaat 868
>Sscrofa_Chr18
|| Length = 61220071
Score = 129 bits (65), Expect = 6e-27
Identities = 101/113 (89%)
Strand = Plus / Minus
Query: 276 aggcttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtgggacgtggg 335
||||||||| |||||||| ||||| |||||||||||| | ||||| || |||||||||||
Sbjct: 21701269 aggcttcaatgtggaaacagtggaatacaagaacatctgtttcacagtctgggacgtggg 21701210
Query: 336 cggccaggacaagatccggccactgtggcgccactacttccagaacacgcagg 388
|||||||||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 21701209 aggccaggacaagattcggcctctgtggcggcactacttccagaacactcagg 21701157
Score = 60.0 bits (30), Expect = 5e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 217 aagaccaccatcctgtacaaactgaagctgggtgaaatcgtgaccaccattcccactata 276
|||||||| |||||||||||||||||| |||| || || || |||||||| ||||| |||
Sbjct: 21701631 aagaccacaatcctgtacaaactgaagttgggggagattgtcaccaccatccccaccata 21701572
Query: 277 gg 278
||
Sbjct: 21701571 gg 21701570
>Sscrofa_Chr05
|| Length = 111506441
Score = 127 bits (64), Expect = 3e-26
Identities = 124/144 (86%)
Strand = Plus / Minus
Query: 129 catggggaatatctttgcaaacctcttcaagggcctttttggcaagaaagaaatgcgcat 188
|||||| |||||||||| ||||||| ||||| |||| |||| ||||| || ||||||||
Sbjct: 15388247 catgggtaatatctttggaaacctcctcaagagcctgattgggaagaaggagatgcgcat 15388188
Query: 189 tctcatggtgggtctagatgctgcgggaaagaccaccatcctgtacaaactgaagctggg 248
|| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 15388187 cctgatggtgggtctggatgccgcggggaagaccaccatcctgtacaagctgaaactggg 15388128
Query: 249 tgaaatcgtgaccaccattcccac 272
|| ||||| |||||||| |||||
Sbjct: 15388127 cgagatcgtcaccaccatccccac 15388104
Score = 123 bits (62), Expect = 4e-25
Identities = 119/138 (86%)
Strand = Plus / Plus
Query: 523 aatgccatgaatgcagccgagatcaccgacaagctgggcctacactctctgcgccacagg 582
||||| ||||| || || |||||||| |||||| ||||||| || || ||||| ||| |
Sbjct: 15380360 aatgctatgaacgctgctgagatcacagacaagttgggcctgcattccctgcgtcaccgc 15380419
Query: 583 aactggtacattcaggccacctgtgccaccagtggtgatgggctctatgagggactggac 642
||||||||||||||||||||||||||||||||||| || ||||| || || || ||||||
Sbjct: 15380420 aactggtacattcaggccacctgtgccaccagtggggacgggctgtacgaaggcctggac 15380479
Query: 643 tggctgtccaatcagctc 660
|||||| |||||||||||
Sbjct: 15380480 tggctggccaatcagctc 15380497
Score = 103 bits (52), Expect = 4e-19
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 280 ttcaacgtggaaaccgtggagtacaagaacatcagcttcaccgtgtgggacgtgggcggc 339
||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 15387267 ttcaacgtggagacggtggagtacaagaacattagcttcacagtttgggatgtgggtggc 15387208
Query: 340 caggacaagatccggccactgtggcgccactacttccagaacac 383
||||||||||| ||||| || ||| | || ||||||||||||||
Sbjct: 15387207 caggacaagattcggcctctctggagacattacttccagaacac 15387164
Score = 83.8 bits (42), Expect = 3e-13
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 421 gagcgtgtgaatgaggcccgagaggagctcatgaggatgctggcagaagacgagctcagg 480
||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 15386895 gagcgagtaaatgaggcccgggaggagctgatgaggatgctggcagaggatgagctgcgg 15386836
Query: 481 gacgctgttctgcttgtgtttgctaacaaacagg 514
|| ||||| || ||||| ||||| ||||||||||
Sbjct: 15386835 gatgctgtgctccttgtctttgcgaacaaacagg 15386802
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 5e-12
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 178 gaaatgcgcattctcatggtgggtctagatgctgcgggaaagaccaccatcctgtacaaa 237
|||||||| || |||||| |||| || || || || || ||||| ||||||||||||||
Sbjct: 200074530 gaaatgcgaatcctcatgttgggcctggacgcggccggcaagacaaccatcctgtacaag 200074471
Query: 238 ctgaagctgggtgaaatcgtgaccaccattcccactataggcttcaacgtggaaaccgtg 297
|||||||||| | ||||||||||| ||||| | || ||||||||||| || |||
Sbjct: 200074470 ttgaagctgggccagtcggtgaccaccatccccaccgtgggtttcaacgtggagacggtg 200074411
Query: 298 gagtacaagaacatcagcttcaccgtgtgggacgtgggcggccaggacaagatccggcca 357
||||| ||| ||| |||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 200074410 acttacaaaaacgtcaagttcaacgtatgggatgtgggcggccaggacaagatccggccg 200074351
Query: 358 ctgtggcg 365
|| |||||
Sbjct: 200074350 ctctggcg 200074343
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,111,438
Number of extensions: 775
Number of successful extensions: 775
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 40
Length of query: 1984
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1962
Effective length of database: 2,808,408,574
Effective search space: 5510097622188
Effective search space used: 5510097622188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)