Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180034.1| transcobalamin-1 [Bos taurus]. 304 7e-83
Alignment gi|XP_002693861.1| PREDICTED: transcobalamin I-like [Bos taurus]. 304 7e-83
Alignment gi|NP_001193168.1| gastric intrinsic factor [Bos taurus]. 82 1e-15
Alignment gi|XP_002693860.1| PREDICTED: gastric intrinsic factor-like [Bo... 82 1e-15
Alignment gi|NP_776620.2| transcobalamin-2 precursor [Bos taurus]. 69 9e-12
>ref|NP_001180034.1| transcobalamin-1 [Bos taurus].
Length = 427
Score = 304 bits (779), Expect = 7e-83
Identities = 159/277 (57%), Positives = 201/277 (72%)
Frame = +1
Query: 70 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
MR S QLPL GLL FSLIPSQLCQ CVV+E ++ L LI+ M N +G G ++LL+
Sbjct: 1 MRPSGQLPLTGLLFFSLIPSQLCQICVVNETNFWRLEPLINTMLNANYTKGTLGLNVLLT 60
Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
RL GI+N SLE++LSQ+I++D+N +M LTSG+LAL IL GAC+N D FI LV
Sbjct: 61 LRLVGIKNQSLEQQLSQQIKEDINSGEME-LTSGELALGILGLGACENQDEEFIRGARLV 119
Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
KL KF+ EI+NME H+GNPLTNYYQLS +L LCLF G+YS+++VT YF PENKN+
Sbjct: 120 SKLEAKFQAEIQNMEAHDGNPLTNYYQLSLALLALCLFNGSYSVTSVTCYFTPENKNYYF 179
Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
FSVDTGA+AVLALTCV++ N + + I Y+ SL +KIQ+E+ GLFGN
Sbjct: 180 GDQFSVDTGAMAVLALTCVQK---NTQKNMDMNAEGKISNYVASLANKIQAERKQGLFGN 236
Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLR 900
+STGEAMQALFV+SDYY+NE+NC+ETL AVF+ R
Sbjct: 237 IFSTGEAMQALFVSSDYYKNEANCRETLRAVFDNISR 273
>ref|XP_002693861.1| PREDICTED: transcobalamin I-like [Bos taurus].
Length = 427
Score = 304 bits (779), Expect = 7e-83
Identities = 159/277 (57%), Positives = 201/277 (72%)
Frame = +1
Query: 70 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
MR S QLPL GLL FSLIPSQLCQ CVV+E ++ L LI+ M N +G G ++LL+
Sbjct: 1 MRPSGQLPLTGLLFFSLIPSQLCQICVVNETNFWRLEPLINTMLNANYTKGTLGLNVLLT 60
Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
RL GI+N SLE++LSQ+I++D+N +M LTSG+LAL IL GAC+N D FI LV
Sbjct: 61 LRLVGIKNQSLEQQLSQQIKEDINSGEME-LTSGELALGILGLGACENQDEEFIRGARLV 119
Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
KL KF+ EI+NME H+GNPLTNYYQLS +L LCLF G+YS+++VT YF PENKN+
Sbjct: 120 SKLEAKFQAEIQNMEAHDGNPLTNYYQLSLALLALCLFNGSYSVTSVTCYFTPENKNYYF 179
Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
FSVDTGA+AVLALTCV++ N + + I Y+ SL +KIQ+E+ GLFGN
Sbjct: 180 GDQFSVDTGAMAVLALTCVQK---NTQKNMDMNAEGKISNYVASLANKIQAERKQGLFGN 236
Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLR 900
+STGEAMQALFV+SDYY+NE+NC+ETL AVF+ R
Sbjct: 237 IFSTGEAMQALFVSSDYYKNEANCRETLRAVFDNISR 273
>ref|NP_001193168.1| gastric intrinsic factor [Bos taurus].
Length = 417
Score = 81.6 bits (200), Expect = 1e-15
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 6/262 (2%)
Frame = +1
Query: 235 SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
S+L++ LAG N ++ L+ D+ D ++LT+GQLAL I+A +C++P
Sbjct: 56 SVLIAMNLAGAYNVEAQKLLTF----DLMASDTADLTAGQLALTIMALTSSCRDP----- 106
Query: 412 HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNY----YQLSFDVLTLCLFRGNYSISNVTHY 579
G+K ME + L +Y Y S +L LC ++ +
Sbjct: 107 ---------GDKVSTLRTQMENWTPSSLGSYASTFYGPSLAILALCQNNPETTLPVAARF 157
Query: 580 FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
+ S F VD GAVA LALTC+ I G + + ++K +E + +I
Sbjct: 158 AKTLLAS---SSPFDVDAGAVATLALTCMYNRIPVGSEEGYRALFAQLLKKIVEDISTRI 214
Query: 757 QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRS 936
++ GL G+ YSTG AMQAL V + + +CQ+T+D V + ++E S+
Sbjct: 215 ---RDNGLIGDVYSTGLAMQALSVTPERPNKQWDCQQTMDTVLDE-IKEGKFQNSMSIAQ 270
Query: 937 YLPCWERPTWTLTKLLLVPKVS 1002
LP + T+ L VP+VS
Sbjct: 271 ILPSLKGKTY-----LDVPQVS 287
>ref|XP_002693860.1| PREDICTED: gastric intrinsic factor-like [Bos taurus].
Length = 417
Score = 81.6 bits (200), Expect = 1e-15
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 6/262 (2%)
Frame = +1
Query: 235 SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
S+L++ LAG N ++ L+ D+ D ++LT+GQLAL I+A +C++P
Sbjct: 56 SVLIAMNLAGAYNVEAQKLLTF----DLMASDTADLTAGQLALTIMALTSSCRDP----- 106
Query: 412 HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNY----YQLSFDVLTLCLFRGNYSISNVTHY 579
G+K ME + L +Y Y S +L LC ++ +
Sbjct: 107 ---------GDKVSTLRTQMENWTPSSLGSYASTFYGPSLAILALCQNNPETTLPVAARF 157
Query: 580 FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
+ S F VD GAVA LALTC+ I G + + ++K +E + +I
Sbjct: 158 AKTLLAS---SSPFDVDAGAVATLALTCMYNRIPVGSEEGYRALFAQLLKKIVEDISTRI 214
Query: 757 QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRS 936
++ GL G+ YSTG AMQAL V + + +CQ+T+D V + ++E S+
Sbjct: 215 ---RDNGLIGDVYSTGLAMQALSVTPERPNKQWDCQQTMDTVLDE-IKEGKFQNSMSIAQ 270
Query: 937 YLPCWERPTWTLTKLLLVPKVS 1002
LP + T+ L VP+VS
Sbjct: 271 ILPSLKGKTY-----LDVPQVS 287
>ref|NP_776620.2| transcobalamin-2 precursor [Bos taurus].
Length = 432
Score = 68.6 bits (166), Expect = 9e-12
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 21/263 (7%)
Frame = +1
Query: 97 VGLLLFSLIP-SQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
+G LLF L L C ++E D + + + L+ MD L EQ+ + LS
Sbjct: 4 LGALLFLLGGLGALANICEITEVDSTLVERLGQRLLPWMDRLSPEQLNPSIYVGLRLSSL 63
Query: 256 LAGIQNP----SLEEELSQRIQDDMNRRDMSNLTS----GQLALIILAFGACKNPDVRFI 411
AG + SL+ Q + + +D ++ + GQLAL +LA A + FI
Sbjct: 64 QAGAKEAHYLHSLKLSYQQSLLRPASNKDDNDSEAKPSMGQLALYLLALRA----NCEFI 119
Query: 412 HDH---HLVEKLGEKFKEEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRGNYSISNVTH 576
LV +L ++F E+ K HN G+P T+YYQ S +L LC+ + S V
Sbjct: 120 GGRKGDRLVSQL-KRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQKRVHDSVVGK 178
Query: 577 -YFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHK 753
+ E+K L H SVDT A+A +A +C++ S N K + I + K ++ + K
Sbjct: 179 LLYAVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRI---NLALKRVQEKILK 235
Query: 754 IQSEKNGGLFGNAYSTGEAMQAL 822
Q+ + G FGN YST A+Q L
Sbjct: 236 AQTPE--GYFGNVYSTPLALQLL 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,552,014
Number of extensions: 923471
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855361.1| PREDICTED: similar to transcobalamin I precurso... 278 2e-77
Alignment gi|NP_001005759.1| gastric intrinsic factor precursor [Canis lu... 71 2e-12
Alignment gi|XP_543481.2| PREDICTED: similar to Transcobalamin II precurs... 65 8e-11
>ref|XP_855361.1| PREDICTED: similar to transcobalamin I precursor [Canis
familiaris].
Length = 433
Score = 278 bits (710), Expect(2) = 2e-77
Identities = 155/273 (56%), Positives = 195/273 (71%), Gaps = 2/273 (0%)
Frame = +1
Query: 70 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
M SHQLPLVGLLLFSLIP Q C+ C +S ++Y+ L LI+ M N + +GI ++LLS
Sbjct: 1 MIPSHQLPLVGLLLFSLIPRQQCEICEISRENYTALNPLINTMINSKYSKGIQATNVLLS 60
Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
RL GI N + E++L ++I + ++ S+LTSGQLAL ILA GACK PD F + LV
Sbjct: 61 LRLGGILNQNQEQKLMRQIVLTVENKE-SSLTSGQLALSILALGACKRPDEMFKNYSDLV 119
Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
++L KF+EEIKNME H+ NPLTNYYQLS DVL LCLF GNYSIS V FNPENKN+
Sbjct: 120 KQLENKFQEEIKNMEEHDDNPLTNYYQLSLDVLALCLFSGNYSISIVATKFNPENKNYYF 179
Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFG 786
G FSVDTGA+AVLALTCVKR +N + +D + I +IESL+ KI S+ K GL G
Sbjct: 180 HGQFSVDTGAMAVLALTCVKRDKTNSQNIMYRQDLEIIGGHIESLIRKILSQKKEDGLIG 239
Query: 787 NAYSTGEAMQALFVASDYY-QNESNCQETLDAV 882
N YSTGEAMQALFV+S YY +++ +CQ+T + V
Sbjct: 240 NIYSTGEAMQALFVSSHYYKKSQWDCQKTRNKV 272
Score = 30.8 bits (68), Expect(2) = 2e-77
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 891 ISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATC 989
I +GVFR GKTYLDVNK + C
Sbjct: 276 IPKGVFRMPTAAAQILPALLGKTYLDVNKDSPC 308
>ref|NP_001005759.1| gastric intrinsic factor precursor [Canis lupus familiaris].
Length = 417
Score = 70.9 bits (172), Expect = 2e-12
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 14/250 (5%)
Frame = +1
Query: 235 SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGA-CKNPDVRFI 411
S+L++ LAG +L E + + D + D + L+ GQLAL I+A + C++P
Sbjct: 56 SVLIAMNLAG----ALSAEARELLADRLGASDSAGLSVGQLALTIMALNSSCRDP----- 106
Query: 412 HDHHLVEKLGEKFKEEIKNMEIHNGN----PLTNYYQLSFDVLTLCLFRGNYSISNVTHY 579
G K ME + P +Y S VL LC ++
Sbjct: 107 ---------GNKVSVLYGQMEAWPPSSPSAPAWTFYGPSLAVLALCQEHPGRALPVAARL 157
Query: 580 FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
+ F+ DTGA+ LALTC+ I G + S ++ +E++ +I
Sbjct: 158 AKILAAGLS---PFNTDTGAMVTLALTCMYNKIPEGSEEGYRTLFSQVLKDVVENISMRI 214
Query: 757 QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAV--------FNTFLREYSV 912
K+ G+ G+ YSTG AMQAL V + E +C++T+D + F+ + +
Sbjct: 215 ---KDNGIIGDVYSTGLAMQALSVTPEPPNKEWDCKKTMDTILKEIEQGKFHNPMSIAQI 271
Query: 913 YQSLQPRSYL 942
SL+ ++YL
Sbjct: 272 LPSLKGKTYL 281
>ref|XP_543481.2| PREDICTED: similar to Transcobalamin II precursor (TCII) (TC II)
[Canis familiaris].
Length = 432
Score = 65.5 bits (158), Expect = 8e-11
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Frame = +1
Query: 292 LSQRIQ-DDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDH---HLVEKLGEKFKEE 459
LS R+ +D NR D + + GQLAL +LA A + F+ H LV +L ++F E+
Sbjct: 85 LSPRLAVNDDNRDDQAKPSMGQLALYLLALRA----NCEFVGGHKGDRLVSQL-KRFLED 139
Query: 460 IKNM--EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL-SGHFSVD 630
K H G+P T+YYQ +L LC+ + + V + +L H SVD
Sbjct: 140 EKRAIGPNHKGHPRTSYYQYGLGILALCVHQKRLHDTVVGKLLYAVEHDHHLHRDHLSVD 199
Query: 631 TGAVAVLALTCVKRSISN----GKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGNAYS 798
T A+A LA TC+ S N +I AI+ T+++ I ++++ G FGN YS
Sbjct: 200 TVAMAGLAFTCLDDSNFNPSQRHRITLAIR---TVREKI------LKAQTPEGYFGNVYS 250
Query: 799 TGEAMQAL 822
T A+Q L
Sbjct: 251 TPLALQLL 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,115,832
Number of extensions: 951368
Number of successful extensions: 2655
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001053.2| transcobalamin-1 precursor [Homo sapiens]. 301 7e-84
Alignment gi|NP_005133.2| gastric intrinsic factor precursor [Homo sapien... 83 5e-16
Alignment gi|NP_000346.2| transcobalamin-2 isoform 1 precursor [Homo sapi... 67 3e-11
Alignment gi|NP_001171655.1| transcobalamin-2 isoform 2 precursor [Homo s... 60 3e-09
>ref|NP_001053.2| transcobalamin-1 precursor [Homo sapiens].
Length = 433
Score = 301 bits (770), Expect(2) = 7e-84
Identities = 160/282 (56%), Positives = 205/282 (72%), Gaps = 2/282 (0%)
Frame = +1
Query: 70 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
MRQSHQLPLVGLLLFS IPSQLC+ C VSE++Y L+ L++ M RG +++LS
Sbjct: 1 MRQSHQLPLVGLLLFSFIPSQLCEICEVSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLS 60
Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
+L GIQ +L +++ Q+I+ ++ R +S+++SG+LALIILA G C+N + I+D+HL+
Sbjct: 61 LKLVGIQIQTLMQKMIQQIKYNVKSR-LSDVSSGELALIILALGVCRNAEENLIYDYHLI 119
Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
+KL KF+ EI+NME HNG PLTNYYQLS DVL LCLF GNYS + V ++F PENKN+
Sbjct: 120 DKLENKFQAEIENMEAHNGTPLTNYYQLSLDVLALCLFNGNYSTAEVVNHFTPENKNYYF 179
Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFG 786
FSVDTGA+AVLALTCVK+S+ NG+IKA I Y +SLV KI SE K GL G
Sbjct: 180 GSQFSVDTGAMAVLALTCVKKSLINGQIKADEGSLKNISIYTKSLVEKILSEKKENGLIG 239
Query: 787 NAYSTGEAMQALFVASDYY-QNESNCQETLDAVFNTFLREYS 909
N +STGEAMQALFV+SDYY +N+ NCQ+TL NT L E S
Sbjct: 240 NTFSTGEAMQALFVSSDYYNENDWNCQQTL----NTVLTEIS 277
Score = 29.3 bits (64), Expect(2) = 7e-84
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 891 ISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATC 989
ISQG F GKT+LD+NK ++C
Sbjct: 276 ISQGAFSNPNAAAQVLPALMGKTFLDINKDSSC 308
>ref|NP_005133.2| gastric intrinsic factor precursor [Homo sapiens].
Length = 417
Score = 82.8 bits (203), Expect = 5e-16
Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 10/282 (3%)
Frame = +1
Query: 127 SQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRI 306
+Q SC V + + M+N SIL++ LAG N ++ L+ ++
Sbjct: 20 TQTQSSCSVPSAQEPLVNGIQVLMENSVTSSAYPNPSILIAMNLAGAYNLKAQKLLTYQL 79
Query: 307 QDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN 483
D ++LT GQL L I+A +C++P + ++++ E + N E
Sbjct: 80 MSS----DNNDLTIGQLGLTIMALTSSCRDPGDKV----SILQRQMENWAPSSPNAEA-- 129
Query: 484 GNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTC 663
+ +Y S +L LC ++ + N S F+VDTGA+A LALTC
Sbjct: 130 ----SAFYGPSLAILALCQKNSEATLPIAVRFAKTLLAN---SSPFNVDTGAMATLALTC 182
Query: 664 VKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFGNAYSTGEAMQALFVASDY 840
+ I G + + ++ +V KI + K+ G+ G+ YSTG AMQAL V +
Sbjct: 183 MYNKIPVGSEEGY---RSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQALSVTPEP 239
Query: 841 YQNESNCQETLDAVFN-----TFLREYSVYQ---SLQPRSYL 942
+ E NC++T D + N F S+ Q SL+ ++YL
Sbjct: 240 SKKEWNCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGKTYL 281
>ref|NP_000346.2| transcobalamin-2 isoform 1 precursor [Homo sapiens].
Length = 427
Score = 67.0 bits (162), Expect = 3e-11
Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 28/273 (10%)
Frame = +1
Query: 97 VGLLLFSL-IPSQLCQSCVVSEKDYSHL-----RLLISAMDNLEQIRGIYGASILLSQRL 258
+G LF L + L + C + E D SHL + L+ MD L SI + RL
Sbjct: 4 LGAFLFLLGVLGALTEMCEIPEMD-SHLVEKLGQHLLPWMDRLSLEH--LNPSIYVGLRL 60
Query: 259 AGIQNPSLEEELSQRI--------------QDDMNRRDMSNLTSGQLALIILAFGACKNP 396
+ +Q + E+ + +DD + + ++ GQLAL +LA A
Sbjct: 61 SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSM--GQLALYLLALRA---- 114
Query: 397 DVRFIHDH---HLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYS-- 558
+ F+ H LV +L ++E + + H G+P T+YYQ +L LCL +
Sbjct: 115 NCEFVRGHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDS 174
Query: 559 -ISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISN-GKIKAAIKDSDTIQKY 732
+ + + P ++ GH SVDT A+A LA TC+KRS N G+ + T+++
Sbjct: 175 VVDKLLYAVEPFHQ-----GHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREE 229
Query: 733 IESLVHKIQSEKNGGLFGNAYSTGEAMQALFVA 831
I ++++ G FGN YST A+Q L +
Sbjct: 230 I------LKAQTPEGHFGNVYSTPLALQFLMTS 256
>ref|NP_001171655.1| transcobalamin-2 isoform 2 precursor [Homo sapiens].
Length = 400
Score = 60.1 bits (144), Expect = 3e-09
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +1
Query: 466 NMEIHNGNPLTNYYQLSFDVLTLCLFRGNYS---ISNVTHYFNPENKNFNLSGHFSVDTG 636
N H G+P T+YYQ +L LCL + + + + P ++ GH SVDT
Sbjct: 115 NWHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLLYAVEPFHQ-----GHHSVDTA 169
Query: 637 AVAVLALTCVKRSISN-GKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGNAYSTGEAM 813
A+A LA TC+KRS N G+ + T+++ I ++++ G FGN YST A+
Sbjct: 170 AMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEI------LKAQTPEGHFGNVYSTPLAL 223
Query: 814 QALFVA 831
Q L +
Sbjct: 224 QFLMTS 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,658,406
Number of extensions: 952149
Number of successful extensions: 2830
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2817
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123931.1| transcobalamin-2 precursor [Mus musculus]. 79 4e-15
Alignment gi|NP_001123930.1| transcobalamin-2 precursor [Mus musculus]. 79 4e-15
Alignment gi|NP_056564.1| transcobalamin-2 precursor [Mus musculus]. 79 4e-15
Alignment gi|NP_032144.2| gastric intrinsic factor precursor [Mus musculu... 79 6e-15
>ref|NP_001123931.1| transcobalamin-2 precursor [Mus musculus].
Length = 430
Score = 79.3 bits (194), Expect = 4e-15
Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
Frame = +1
Query: 94 LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
L LLL S + L + CV+ D + + L+ MD L EQ+ + LS
Sbjct: 4 LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63
Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
AG + L Q + R S+ L+ G LAL +LA A C+ R
Sbjct: 64 QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122
Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
L+ +L ++E K + H G+P TNYYQ +L LC+ + S V +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181
Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
E+ F GH SVDT A+A LALTC++R N ++ I + IE++ KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235
Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
S+ G FGN YST A+Q L +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259
>ref|NP_001123930.1| transcobalamin-2 precursor [Mus musculus].
Length = 430
Score = 79.3 bits (194), Expect = 4e-15
Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
Frame = +1
Query: 94 LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
L LLL S + L + CV+ D + + L+ MD L EQ+ + LS
Sbjct: 4 LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63
Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
AG + L Q + R S+ L+ G LAL +LA A C+ R
Sbjct: 64 QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122
Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
L+ +L ++E K + H G+P TNYYQ +L LC+ + S V +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181
Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
E+ F GH SVDT A+A LALTC++R N ++ I + IE++ KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235
Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
S+ G FGN YST A+Q L +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259
>ref|NP_056564.1| transcobalamin-2 precursor [Mus musculus].
Length = 430
Score = 79.3 bits (194), Expect = 4e-15
Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
Frame = +1
Query: 94 LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
L LLL S + L + CV+ D + + L+ MD L EQ+ + LS
Sbjct: 4 LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63
Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
AG + L Q + R S+ L+ G LAL +LA A C+ R
Sbjct: 64 QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122
Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
L+ +L ++E K + H G+P TNYYQ +L LC+ + S V +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181
Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
E+ F GH SVDT A+A LALTC++R N ++ I + IE++ KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235
Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
S+ G FGN YST A+Q L +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259
>ref|NP_032144.2| gastric intrinsic factor precursor [Mus musculus].
Length = 417
Score = 79.0 bits (193), Expect = 6e-15
Identities = 78/281 (27%), Positives = 124/281 (44%), Gaps = 14/281 (4%)
Frame = +1
Query: 142 SCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMN 321
SC V + L + M+N SIL++ LAG N ++ L+ ++
Sbjct: 25 SCSVPPDQQPWVDGLQALMENSVTDSDFPNPSILIAMNLAGAYNVEAQKLLTYQLMAS-- 82
Query: 322 RRDMSNLTSGQLALIILAF-GACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN----G 486
D ++LTSGQLAL ++A +C++P G K +K ME + G
Sbjct: 83 --DSADLTSGQLALTVMALTSSCRDP--------------GSKVSTLLKKMENWSPSSPG 126
Query: 487 NPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCV 666
+ +Y +L LC ++ + F+VDTGAVA LALTC+
Sbjct: 127 AESSAFYGPGLAILALCQKSSEATLPIAVRFAKTLMME---PSPFNVDTGAVATLALTCM 183
Query: 667 KRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFGNAYSTGEAMQALFVASDYY 843
I G + D + ++++V KI K G+ G+ YSTG AMQAL V +
Sbjct: 184 YNKIPVGSQE---NYRDLFGQALKAIVEKISLRIKADGIIGDIYSTGLAMQALSVTPEQP 240
Query: 844 QNESNCQETLDAVFN-----TFLREYSVYQ---SLQPRSYL 942
+ +C++T+ + N F S+ Q SL+ ++YL
Sbjct: 241 TKKWDCEKTMHTILNEIKQGKFQNPMSIAQILPSLKGKTYL 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,283,343
Number of extensions: 815554
Number of successful extensions: 2192
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2184
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360619.1| PREDICTED: transcobalamin-1 isoform 1 [Sus s... 541 e-161
Alignment gi|XP_003360620.1| PREDICTED: transcobalamin-1 isoform 2 [Sus s... 461 e-137
Alignment gi|XP_003122730.1| PREDICTED: gastric intrinsic factor [Sus scr... 90 2e-18
Alignment gi|XP_001929348.1| PREDICTED: transcobalamin-2 isoform 1 [Sus s... 59 6e-09
Alignment gi|XP_003361653.1| PREDICTED: transcobalamin-2-like [Sus scrofa]. 56 4e-08
>ref|XP_003360619.1| PREDICTED: transcobalamin-1 isoform 1 [Sus scrofa].
Length = 324
Score = 541 bits (1395), Expect(2) = e-161
Identities = 272/273 (99%), Positives = 272/273 (99%)
Frame = +1
Query: 70 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS
Sbjct: 1 MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 60
Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV
Sbjct: 61 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 120
Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
EKLGEKFKEEIKNMEIHN NPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL
Sbjct: 121 EKLGEKFKEEIKNMEIHNSNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 180
Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN
Sbjct: 181 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 240
Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFN 888
AYSTGEAMQALFVASDYYQNESNCQETLDAVFN
Sbjct: 241 AYSTGEAMQALFVASDYYQNESNCQETLDAVFN 273
Score = 46.6 bits (109), Expect(2) = e-161
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = +3
Query: 888 HISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATCPQS 998
+ISQGVFR GKTYLDVNKTATCPQS
Sbjct: 274 NISQGVFRLPIAAAQILPALLGKTYLDVNKTATCPQS 310
>ref|XP_003360620.1| PREDICTED: transcobalamin-1 isoform 2 [Sus scrofa].
Length = 282
Score = 461 bits (1185), Expect(2) = e-137
Identities = 230/231 (99%), Positives = 230/231 (99%)
Frame = +1
Query: 196 MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA 375
MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA
Sbjct: 1 MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA 60
Query: 376 FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNY 555
FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN NPLTNYYQLSFDVLTLCLFRGNY
Sbjct: 61 FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHNSNPLTNYYQLSFDVLTLCLFRGNY 120
Query: 556 SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI 735
SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI
Sbjct: 121 SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI 180
Query: 736 ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN 888
ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN
Sbjct: 181 ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN 231
Score = 46.6 bits (109), Expect(2) = e-137
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = +3
Query: 888 HISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATCPQS 998
+ISQGVFR GKTYLDVNKTATCPQS
Sbjct: 232 NISQGVFRLPIAAAQILPALLGKTYLDVNKTATCPQS 268
>ref|XP_003122730.1| PREDICTED: gastric intrinsic factor [Sus scrofa].
Length = 425
Score = 89.7 bits (221), Expect = 2e-18
Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 2/258 (0%)
Frame = +1
Query: 235 SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
SIL++ LAG N +E L+ ++ + S+LT+GQLAL I+A +C++P R
Sbjct: 64 SILIAMNLAGAYNTEAQELLTYKLMAS----NTSDLTTGQLALTIMALTSSCRDPGNR-- 117
Query: 412 HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPE 591
+ G+ +++ H + +Y+ S +LTLC ++ +
Sbjct: 118 ----IAILQGQMENWAPPSLDTH----ASTFYEPSLGILTLCQNNPEKTLPLAARFAKTL 169
Query: 592 NKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKIQSEK 768
N S F++DTGA+A LALTC+ I G + S ++ +E++ +IQ
Sbjct: 170 LAN---SSPFNMDTGAMATLALTCMYNKIPVGSEEGYRALFSQVLRNTVENISMRIQ--- 223
Query: 769 NGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRSYLPC 948
+ G+ GN YSTG AMQAL V + E +CQ+T+D V T ++E + + LP
Sbjct: 224 DNGIIGNIYSTGLAMQALSVTPERPNKEWDCQKTMDTVL-TEIKEGKFHNPMAIAQILPS 282
Query: 949 WERPTWTLTKLLLVPKVS 1002
+ T+ L VP VS
Sbjct: 283 LKGKTY-----LDVPHVS 295
>ref|XP_001929348.1| PREDICTED: transcobalamin-2 isoform 1 [Sus scrofa].
Length = 429
Score = 58.5 bits (140), Expect = 6e-09
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Frame = +1
Query: 235 SILLSQRLAGIQNP--------SLEEELSQRIQDDMNRRDMSNLTS----GQLALIILAF 378
SI + RL+G+Q SL+ Q + ++ D S+ + GQLAL +LA
Sbjct: 53 SIYVGLRLSGLQAGPKEAHYLHSLKLSYQQSLLRSVSSNDKSDSEAKPSMGQLALYLLAL 112
Query: 379 GA-CKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRG 549
A C+ R LV +L ++F E K HN G+P T+YYQ +L LCL R
Sbjct: 113 RANCEFVGSR--KGDRLVSQL-KRFLETEKRAIGHNHKGHPHTSYYQYGLSILALCLHRK 169
Query: 550 NYSIS-------NVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIK 708
S + H +P+ SVDT A+A LA +C++ +SN + +
Sbjct: 170 RVHDSVVGKLLYAIEHEQHPD---------LSVDTTAMAGLAFSCLE--VSNLNLNQRDR 218
Query: 709 DSDTIQKYIESLVHKIQSEKNGGLFGNAYSTGEAMQALFVA 831
+ IQ+ E + ++++ G FGN YST A+Q L +
Sbjct: 219 IALAIQRVQERI---LRAQTPEGHFGNVYSTPLALQFLMTS 256
>ref|XP_003361653.1| PREDICTED: transcobalamin-2-like [Sus scrofa].
Length = 429
Score = 55.8 bits (133), Expect = 4e-08
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Frame = +1
Query: 277 SLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGA-CKNPDVRFIHDHHLVEKLGEKFK 453
S ++ L + + + + + GQLAL +LA A C+ R LV +L ++F
Sbjct: 79 SYQQSLLRSVSSNDKSDSEAKPSMGQLALYLLALRANCEFVGSR--KGDRLVSQL-KRFL 135
Query: 454 EEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRGNYSIS-------NVTHYFNPENKNFN 606
E K HN G+P T+YYQ +L LCL R S + H +P+
Sbjct: 136 ETEKRAIGHNHKGHPHTSYYQYGLSILALCLHRKRVHDSVVGKLLYAIEHEQHPD----- 190
Query: 607 LSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFG 786
SVDT A+A LA +C++ +SN + + IQ+ E + ++++ G FG
Sbjct: 191 ----LSVDTTAMAGLAFSCLE--VSNLXXXXXXRIALAIQRVQERI---LRAQTPEGHFG 241
Query: 787 NAYSTGEAMQALFVA 831
N YST A+Q L +
Sbjct: 242 NVYSTPLALQFLMTS 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,446,274
Number of extensions: 589434
Number of successful extensions: 1685
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 7
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007251
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892341.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 377 e-102
>gb|GL892341.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1215
Length = 20981
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 628 gatactggagccgtggctgttcttgctctgacctgtgtgaagaggagtataagcaatggg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17262 gatactggagccgtggctgttcttgctctgacctgtgtgaagaggagtataagcaatggg 17321
Query: 688 aagattaaagcagctattaaggattcagacacaatccaaaaatatatagagtcactggta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17322 aagattaaagcagctattaaggattcagacacaatccaaaaatatatagagtcactggta 17381
Query: 748 cataagatccagtctgagaaaaatggtggtctctttggaaacgcgtatagcacaggagaa 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17382 cataagatccagtctgagaaaaatggtggtctctttggaaacgcgtatagcacaggagaa 17441
Query: 808 gctatgcagg 817
||||||||||
Sbjct: 17442 gctatgcagg 17451
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 148 gtggtaagcgagaaagactactcccatctaaggctgctgataagcgcaatggacaattta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13990 gtggtaagcgagaaagactactcccatctaaggctgctgataagcgcaatggacaattta 14049
Query: 208 gaacaaatcagaggaatctatggagccagcatcctgttgtcgcaaagacttgccgggatt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14050 gaacaaatcagaggaatctatggagccagcatcctgttgtcgcaaagacttgccgggatt 14109
Query: 268 cagaacccaagcctcgaagaagagctgagtcagcgaatccaagacgatatgaacaggaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14110 cagaacccaagcctcgaagaagagctgagtcagcgaatccaagacgatatgaacaggaga 14169
Query: 328 g 328
|
Sbjct: 14170 g 14170
Score = 353 bits (178), Expect = 1e-94
Identities = 185/186 (99%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 815 aggctctctttgtcgcatcagactattaccaaaatgaatcaaattgccaagaaactctgg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19781 aggctctctttgtcgcatcagactattaccaaaatgaatcaaattgccaagaaactctgg 19840
Query: 875 acgcggtgtttaaca-catttctcagggagtattccgtctaccaatcgctgcagcccaga 933
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19841 acgcggtgtttaacaacatttctcagggagtattccgtctaccaatcgctgcagcccaga 19900
Query: 934 tcttacctgccctgttgggaaagacctacctggacgttaacaaaactgctacttgtcccc 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19901 tcttacctgccctgttgggaaagacctacctggacgttaacaaaactgctacttgtcccc 19960
Query: 994 aaagtc 999
||||||
Sbjct: 19961 aaagtc 19966
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Plus
Query: 472 gaaatacacaacggcaatccgctgactaactattaccagctcagcttcgacgttttgacc 531
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16596 gaaatacacaacagcaatccgctgactaactattaccagctcagcttcgacgttttgacc 16655
Query: 532 ttgtgtctgttcagagggaactattcaatcagcaatgtcactcattacttcaatcctgaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16656 ttgtgtctgttcagagggaactattcaatcagcaatgtcactcattacttcaatcctgaa 16715
Query: 592 aataaaaactttaatcttagcggccatttctcagtgg 628
|||||||||||||||||||||||||||||||||||||
Sbjct: 16716 aataaaaactttaatcttagcggccatttctcagtgg 16752
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1 ttaccctatgtccatcacccaataaatagacagtcaagccctcgccattcccatacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10871 ttaccctatgtccatcacccaataaatagacagtcaagccctcgccattcccatacaact 10930
Query: 61 gctggagagatgagacaatcacaccagctgcccctcgtggggctcctattgttctctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10931 gctggagagatgagacaatcacaccagctgcccctcgtggggctcctattgttctctctc 10990
Query: 121 attccaagccaactatgccagagctgtg 148
||||||||||||||||||||||||||||
Sbjct: 10991 attccaagccaactatgccagagctgtg 11018
Score = 281 bits (142), Expect = 4e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 327 agacatgtccaatttaacctcgggacagcttgccttgattattctggcttttggagcatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15472 agacatgtccaatttaacctcgggacagcttgccttgattattctggcttttggagcatg 15531
Query: 387 caaaaaccctgatgtcaggtttatacacgatcatcaccttgttgagaaactaggggaaaa 446
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15532 caaaaaccctgatgtcaggtttatacatgatcatcaccttgttgagaaactaggggaaaa 15591
Query: 447 gttcaaagaagaaattaagaacatgg 472
||||||||||||||||||||||||||
Sbjct: 15592 gttcaaagaagaaattaagaacatgg 15617
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,994,952
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 6
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)