Animal-Genome cDNA 20110601C-007251


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001180034.1| transcobalamin-1 [Bos taurus].                    304   7e-83
Alignment   gi|XP_002693861.1| PREDICTED: transcobalamin I-like [Bos taurus].    304   7e-83
Alignment   gi|NP_001193168.1| gastric intrinsic factor [Bos taurus].             82   1e-15
Alignment   gi|XP_002693860.1| PREDICTED: gastric intrinsic factor-like [Bo...    82   1e-15
Alignment   gi|NP_776620.2| transcobalamin-2 precursor [Bos taurus].              69   9e-12

>ref|NP_001180034.1| transcobalamin-1 [Bos taurus].
          Length = 427

 Score =  304 bits (779), Expect = 7e-83
 Identities = 159/277 (57%), Positives = 201/277 (72%)
 Frame = +1

Query: 70  MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
           MR S QLPL GLL FSLIPSQLCQ CVV+E ++  L  LI+ M N    +G  G ++LL+
Sbjct: 1   MRPSGQLPLTGLLFFSLIPSQLCQICVVNETNFWRLEPLINTMLNANYTKGTLGLNVLLT 60

Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
            RL GI+N SLE++LSQ+I++D+N  +M  LTSG+LAL IL  GAC+N D  FI    LV
Sbjct: 61  LRLVGIKNQSLEQQLSQQIKEDINSGEME-LTSGELALGILGLGACENQDEEFIRGARLV 119

Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
            KL  KF+ EI+NME H+GNPLTNYYQLS  +L LCLF G+YS+++VT YF PENKN+  
Sbjct: 120 SKLEAKFQAEIQNMEAHDGNPLTNYYQLSLALLALCLFNGSYSVTSVTCYFTPENKNYYF 179

Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
              FSVDTGA+AVLALTCV++   N +    +     I  Y+ SL +KIQ+E+  GLFGN
Sbjct: 180 GDQFSVDTGAMAVLALTCVQK---NTQKNMDMNAEGKISNYVASLANKIQAERKQGLFGN 236

Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLR 900
            +STGEAMQALFV+SDYY+NE+NC+ETL AVF+   R
Sbjct: 237 IFSTGEAMQALFVSSDYYKNEANCRETLRAVFDNISR 273


>ref|XP_002693861.1| PREDICTED: transcobalamin I-like [Bos taurus].
          Length = 427

 Score =  304 bits (779), Expect = 7e-83
 Identities = 159/277 (57%), Positives = 201/277 (72%)
 Frame = +1

Query: 70  MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
           MR S QLPL GLL FSLIPSQLCQ CVV+E ++  L  LI+ M N    +G  G ++LL+
Sbjct: 1   MRPSGQLPLTGLLFFSLIPSQLCQICVVNETNFWRLEPLINTMLNANYTKGTLGLNVLLT 60

Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
            RL GI+N SLE++LSQ+I++D+N  +M  LTSG+LAL IL  GAC+N D  FI    LV
Sbjct: 61  LRLVGIKNQSLEQQLSQQIKEDINSGEME-LTSGELALGILGLGACENQDEEFIRGARLV 119

Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
            KL  KF+ EI+NME H+GNPLTNYYQLS  +L LCLF G+YS+++VT YF PENKN+  
Sbjct: 120 SKLEAKFQAEIQNMEAHDGNPLTNYYQLSLALLALCLFNGSYSVTSVTCYFTPENKNYYF 179

Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
              FSVDTGA+AVLALTCV++   N +    +     I  Y+ SL +KIQ+E+  GLFGN
Sbjct: 180 GDQFSVDTGAMAVLALTCVQK---NTQKNMDMNAEGKISNYVASLANKIQAERKQGLFGN 236

Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLR 900
            +STGEAMQALFV+SDYY+NE+NC+ETL AVF+   R
Sbjct: 237 IFSTGEAMQALFVSSDYYKNEANCRETLRAVFDNISR 273


>ref|NP_001193168.1| gastric intrinsic factor [Bos taurus].
          Length = 417

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 6/262 (2%)
 Frame = +1

Query: 235  SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
            S+L++  LAG  N   ++ L+     D+   D ++LT+GQLAL I+A   +C++P     
Sbjct: 56   SVLIAMNLAGAYNVEAQKLLTF----DLMASDTADLTAGQLALTIMALTSSCRDP----- 106

Query: 412  HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNY----YQLSFDVLTLCLFRGNYSISNVTHY 579
                     G+K       ME    + L +Y    Y  S  +L LC      ++     +
Sbjct: 107  ---------GDKVSTLRTQMENWTPSSLGSYASTFYGPSLAILALCQNNPETTLPVAARF 157

Query: 580  FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
                  +   S  F VD GAVA LALTC+   I  G  +      +  ++K +E +  +I
Sbjct: 158  AKTLLAS---SSPFDVDAGAVATLALTCMYNRIPVGSEEGYRALFAQLLKKIVEDISTRI 214

Query: 757  QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRS 936
               ++ GL G+ YSTG AMQAL V  +    + +CQ+T+D V +  ++E     S+    
Sbjct: 215  ---RDNGLIGDVYSTGLAMQALSVTPERPNKQWDCQQTMDTVLDE-IKEGKFQNSMSIAQ 270

Query: 937  YLPCWERPTWTLTKLLLVPKVS 1002
             LP  +  T+     L VP+VS
Sbjct: 271  ILPSLKGKTY-----LDVPQVS 287


>ref|XP_002693860.1| PREDICTED: gastric intrinsic factor-like [Bos taurus].
          Length = 417

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 6/262 (2%)
 Frame = +1

Query: 235  SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
            S+L++  LAG  N   ++ L+     D+   D ++LT+GQLAL I+A   +C++P     
Sbjct: 56   SVLIAMNLAGAYNVEAQKLLTF----DLMASDTADLTAGQLALTIMALTSSCRDP----- 106

Query: 412  HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNY----YQLSFDVLTLCLFRGNYSISNVTHY 579
                     G+K       ME    + L +Y    Y  S  +L LC      ++     +
Sbjct: 107  ---------GDKVSTLRTQMENWTPSSLGSYASTFYGPSLAILALCQNNPETTLPVAARF 157

Query: 580  FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
                  +   S  F VD GAVA LALTC+   I  G  +      +  ++K +E +  +I
Sbjct: 158  AKTLLAS---SSPFDVDAGAVATLALTCMYNRIPVGSEEGYRALFAQLLKKIVEDISTRI 214

Query: 757  QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRS 936
               ++ GL G+ YSTG AMQAL V  +    + +CQ+T+D V +  ++E     S+    
Sbjct: 215  ---RDNGLIGDVYSTGLAMQALSVTPERPNKQWDCQQTMDTVLDE-IKEGKFQNSMSIAQ 270

Query: 937  YLPCWERPTWTLTKLLLVPKVS 1002
             LP  +  T+     L VP+VS
Sbjct: 271  ILPSLKGKTY-----LDVPQVS 287


>ref|NP_776620.2| transcobalamin-2 precursor [Bos taurus].
          Length = 432

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 21/263 (7%)
 Frame = +1

Query: 97  VGLLLFSLIP-SQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
           +G LLF L     L   C ++E D + +    + L+  MD L  EQ+       + LS  
Sbjct: 4   LGALLFLLGGLGALANICEITEVDSTLVERLGQRLLPWMDRLSPEQLNPSIYVGLRLSSL 63

Query: 256 LAGIQNP----SLEEELSQRIQDDMNRRDMSNLTS----GQLALIILAFGACKNPDVRFI 411
            AG +      SL+    Q +    + +D ++  +    GQLAL +LA  A    +  FI
Sbjct: 64  QAGAKEAHYLHSLKLSYQQSLLRPASNKDDNDSEAKPSMGQLALYLLALRA----NCEFI 119

Query: 412 HDH---HLVEKLGEKFKEEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRGNYSISNVTH 576
                  LV +L ++F E+ K    HN  G+P T+YYQ S  +L LC+ +     S V  
Sbjct: 120 GGRKGDRLVSQL-KRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQKRVHDSVVGK 178

Query: 577 -YFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHK 753
             +  E+K   L  H SVDT A+A +A +C++ S  N K +  I   +   K ++  + K
Sbjct: 179 LLYAVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRI---NLALKRVQEKILK 235

Query: 754 IQSEKNGGLFGNAYSTGEAMQAL 822
            Q+ +  G FGN YST  A+Q L
Sbjct: 236 AQTPE--GYFGNVYSTPLALQLL 256


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,552,014
Number of extensions: 923471
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855361.1| PREDICTED: similar to transcobalamin I precurso...   278   2e-77
Alignment   gi|NP_001005759.1| gastric intrinsic factor precursor [Canis lu...    71   2e-12
Alignment   gi|XP_543481.2| PREDICTED: similar to Transcobalamin II precurs...    65   8e-11

>ref|XP_855361.1| PREDICTED: similar to transcobalamin I precursor [Canis
           familiaris].
          Length = 433

 Score =  278 bits (710), Expect(2) = 2e-77
 Identities = 155/273 (56%), Positives = 195/273 (71%), Gaps = 2/273 (0%)
 Frame = +1

Query: 70  MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
           M  SHQLPLVGLLLFSLIP Q C+ C +S ++Y+ L  LI+ M N +  +GI   ++LLS
Sbjct: 1   MIPSHQLPLVGLLLFSLIPRQQCEICEISRENYTALNPLINTMINSKYSKGIQATNVLLS 60

Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
            RL GI N + E++L ++I   +  ++ S+LTSGQLAL ILA GACK PD  F +   LV
Sbjct: 61  LRLGGILNQNQEQKLMRQIVLTVENKE-SSLTSGQLALSILALGACKRPDEMFKNYSDLV 119

Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
           ++L  KF+EEIKNME H+ NPLTNYYQLS DVL LCLF GNYSIS V   FNPENKN+  
Sbjct: 120 KQLENKFQEEIKNMEEHDDNPLTNYYQLSLDVLALCLFSGNYSISIVATKFNPENKNYYF 179

Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFG 786
            G FSVDTGA+AVLALTCVKR  +N +     +D + I  +IESL+ KI S+ K  GL G
Sbjct: 180 HGQFSVDTGAMAVLALTCVKRDKTNSQNIMYRQDLEIIGGHIESLIRKILSQKKEDGLIG 239

Query: 787 NAYSTGEAMQALFVASDYY-QNESNCQETLDAV 882
           N YSTGEAMQALFV+S YY +++ +CQ+T + V
Sbjct: 240 NIYSTGEAMQALFVSSHYYKKSQWDCQKTRNKV 272



 Score = 30.8 bits (68), Expect(2) = 2e-77
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 891 ISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATC 989
           I +GVFR             GKTYLDVNK + C
Sbjct: 276 IPKGVFRMPTAAAQILPALLGKTYLDVNKDSPC 308


>ref|NP_001005759.1| gastric intrinsic factor precursor [Canis lupus familiaris].
          Length = 417

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 14/250 (5%)
 Frame = +1

Query: 235 SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGA-CKNPDVRFI 411
           S+L++  LAG    +L  E  + + D +   D + L+ GQLAL I+A  + C++P     
Sbjct: 56  SVLIAMNLAG----ALSAEARELLADRLGASDSAGLSVGQLALTIMALNSSCRDP----- 106

Query: 412 HDHHLVEKLGEKFKEEIKNMEIHNGN----PLTNYYQLSFDVLTLCLFRGNYSISNVTHY 579
                    G K       ME    +    P   +Y  S  VL LC      ++      
Sbjct: 107 ---------GNKVSVLYGQMEAWPPSSPSAPAWTFYGPSLAVLALCQEHPGRALPVAARL 157

Query: 580 FNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKI 756
                   +    F+ DTGA+  LALTC+   I  G  +      S  ++  +E++  +I
Sbjct: 158 AKILAAGLS---PFNTDTGAMVTLALTCMYNKIPEGSEEGYRTLFSQVLKDVVENISMRI 214

Query: 757 QSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAV--------FNTFLREYSV 912
              K+ G+ G+ YSTG AMQAL V  +    E +C++T+D +        F+  +    +
Sbjct: 215 ---KDNGIIGDVYSTGLAMQALSVTPEPPNKEWDCKKTMDTILKEIEQGKFHNPMSIAQI 271

Query: 913 YQSLQPRSYL 942
             SL+ ++YL
Sbjct: 272 LPSLKGKTYL 281


>ref|XP_543481.2| PREDICTED: similar to Transcobalamin II precursor (TCII) (TC II)
           [Canis familiaris].
          Length = 432

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
 Frame = +1

Query: 292 LSQRIQ-DDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDH---HLVEKLGEKFKEE 459
           LS R+  +D NR D +  + GQLAL +LA  A    +  F+  H    LV +L ++F E+
Sbjct: 85  LSPRLAVNDDNRDDQAKPSMGQLALYLLALRA----NCEFVGGHKGDRLVSQL-KRFLED 139

Query: 460 IKNM--EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL-SGHFSVD 630
            K      H G+P T+YYQ    +L LC+ +     + V         + +L   H SVD
Sbjct: 140 EKRAIGPNHKGHPRTSYYQYGLGILALCVHQKRLHDTVVGKLLYAVEHDHHLHRDHLSVD 199

Query: 631 TGAVAVLALTCVKRSISN----GKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGNAYS 798
           T A+A LA TC+  S  N     +I  AI+   T+++ I      ++++   G FGN YS
Sbjct: 200 TVAMAGLAFTCLDDSNFNPSQRHRITLAIR---TVREKI------LKAQTPEGYFGNVYS 250

Query: 799 TGEAMQAL 822
           T  A+Q L
Sbjct: 251 TPLALQLL 258


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,115,832
Number of extensions: 951368
Number of successful extensions: 2655
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001053.2| transcobalamin-1 precursor [Homo sapiens].           301   7e-84
Alignment   gi|NP_005133.2| gastric intrinsic factor precursor [Homo sapien...    83   5e-16
Alignment   gi|NP_000346.2| transcobalamin-2 isoform 1 precursor [Homo sapi...    67   3e-11
Alignment   gi|NP_001171655.1| transcobalamin-2 isoform 2 precursor [Homo s...    60   3e-09

>ref|NP_001053.2| transcobalamin-1 precursor [Homo sapiens].
          Length = 433

 Score =  301 bits (770), Expect(2) = 7e-84
 Identities = 160/282 (56%), Positives = 205/282 (72%), Gaps = 2/282 (0%)
 Frame = +1

Query: 70  MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
           MRQSHQLPLVGLLLFS IPSQLC+ C VSE++Y  L+ L++ M      RG    +++LS
Sbjct: 1   MRQSHQLPLVGLLLFSFIPSQLCEICEVSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLS 60

Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
            +L GIQ  +L +++ Q+I+ ++  R +S+++SG+LALIILA G C+N +   I+D+HL+
Sbjct: 61  LKLVGIQIQTLMQKMIQQIKYNVKSR-LSDVSSGELALIILALGVCRNAEENLIYDYHLI 119

Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
           +KL  KF+ EI+NME HNG PLTNYYQLS DVL LCLF GNYS + V ++F PENKN+  
Sbjct: 120 DKLENKFQAEIENMEAHNGTPLTNYYQLSLDVLALCLFNGNYSTAEVVNHFTPENKNYYF 179

Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFG 786
              FSVDTGA+AVLALTCVK+S+ NG+IKA       I  Y +SLV KI SE K  GL G
Sbjct: 180 GSQFSVDTGAMAVLALTCVKKSLINGQIKADEGSLKNISIYTKSLVEKILSEKKENGLIG 239

Query: 787 NAYSTGEAMQALFVASDYY-QNESNCQETLDAVFNTFLREYS 909
           N +STGEAMQALFV+SDYY +N+ NCQ+TL    NT L E S
Sbjct: 240 NTFSTGEAMQALFVSSDYYNENDWNCQQTL----NTVLTEIS 277



 Score = 29.3 bits (64), Expect(2) = 7e-84
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 891 ISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATC 989
           ISQG F              GKT+LD+NK ++C
Sbjct: 276 ISQGAFSNPNAAAQVLPALMGKTFLDINKDSSC 308


>ref|NP_005133.2| gastric intrinsic factor precursor [Homo sapiens].
          Length = 417

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 10/282 (3%)
 Frame = +1

Query: 127 SQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRI 306
           +Q   SC V       +  +   M+N          SIL++  LAG  N   ++ L+ ++
Sbjct: 20  TQTQSSCSVPSAQEPLVNGIQVLMENSVTSSAYPNPSILIAMNLAGAYNLKAQKLLTYQL 79

Query: 307 QDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN 483
                  D ++LT GQL L I+A   +C++P  +      ++++  E +     N E   
Sbjct: 80  MSS----DNNDLTIGQLGLTIMALTSSCRDPGDKV----SILQRQMENWAPSSPNAEA-- 129

Query: 484 GNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTC 663
               + +Y  S  +L LC      ++     +      N   S  F+VDTGA+A LALTC
Sbjct: 130 ----SAFYGPSLAILALCQKNSEATLPIAVRFAKTLLAN---SSPFNVDTGAMATLALTC 182

Query: 664 VKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFGNAYSTGEAMQALFVASDY 840
           +   I  G  +          + ++ +V KI  + K+ G+ G+ YSTG AMQAL V  + 
Sbjct: 183 MYNKIPVGSEEGY---RSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQALSVTPEP 239

Query: 841 YQNESNCQETLDAVFN-----TFLREYSVYQ---SLQPRSYL 942
            + E NC++T D + N      F    S+ Q   SL+ ++YL
Sbjct: 240 SKKEWNCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGKTYL 281


>ref|NP_000346.2| transcobalamin-2 isoform 1 precursor [Homo sapiens].
          Length = 427

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 28/273 (10%)
 Frame = +1

Query: 97  VGLLLFSL-IPSQLCQSCVVSEKDYSHL-----RLLISAMDNLEQIRGIYGASILLSQRL 258
           +G  LF L +   L + C + E D SHL     + L+  MD L         SI +  RL
Sbjct: 4   LGAFLFLLGVLGALTEMCEIPEMD-SHLVEKLGQHLLPWMDRLSLEH--LNPSIYVGLRL 60

Query: 259 AGIQNPSLEEELSQRI--------------QDDMNRRDMSNLTSGQLALIILAFGACKNP 396
           + +Q  + E+     +              +DD + +   ++  GQLAL +LA  A    
Sbjct: 61  SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSM--GQLALYLLALRA---- 114

Query: 397 DVRFIHDH---HLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYS-- 558
           +  F+  H    LV +L    ++E + +   H G+P T+YYQ    +L LCL +      
Sbjct: 115 NCEFVRGHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDS 174

Query: 559 -ISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISN-GKIKAAIKDSDTIQKY 732
            +  + +   P ++     GH SVDT A+A LA TC+KRS  N G+ +       T+++ 
Sbjct: 175 VVDKLLYAVEPFHQ-----GHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREE 229

Query: 733 IESLVHKIQSEKNGGLFGNAYSTGEAMQALFVA 831
           I      ++++   G FGN YST  A+Q L  +
Sbjct: 230 I------LKAQTPEGHFGNVYSTPLALQFLMTS 256


>ref|NP_001171655.1| transcobalamin-2 isoform 2 precursor [Homo sapiens].
          Length = 400

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
 Frame = +1

Query: 466 NMEIHNGNPLTNYYQLSFDVLTLCLFRGNYS---ISNVTHYFNPENKNFNLSGHFSVDTG 636
           N   H G+P T+YYQ    +L LCL +       +  + +   P ++     GH SVDT 
Sbjct: 115 NWHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLLYAVEPFHQ-----GHHSVDTA 169

Query: 637 AVAVLALTCVKRSISN-GKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGNAYSTGEAM 813
           A+A LA TC+KRS  N G+ +       T+++ I      ++++   G FGN YST  A+
Sbjct: 170 AMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEI------LKAQTPEGHFGNVYSTPLAL 223

Query: 814 QALFVA 831
           Q L  +
Sbjct: 224 QFLMTS 229


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,658,406
Number of extensions: 952149
Number of successful extensions: 2830
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2817
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001123931.1| transcobalamin-2 precursor [Mus musculus].         79   4e-15
Alignment   gi|NP_001123930.1| transcobalamin-2 precursor [Mus musculus].         79   4e-15
Alignment   gi|NP_056564.1| transcobalamin-2 precursor [Mus musculus].            79   4e-15
Alignment   gi|NP_032144.2| gastric intrinsic factor precursor [Mus musculu...    79   6e-15

>ref|NP_001123931.1| transcobalamin-2 precursor [Mus musculus].
          Length = 430

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
 Frame = +1

Query: 94  LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
           L  LLL S +   L + CV+   D   +    + L+  MD L  EQ+       + LS  
Sbjct: 4   LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63

Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
            AG +       L    Q  + R   S+        L+ G LAL +LA  A C+    R 
Sbjct: 64  QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122

Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
                L+ +L    ++E K +   H G+P TNYYQ    +L LC+ +     S V    +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181

Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
             E+  F   GH SVDT A+A LALTC++R   N  ++  I  +      IE++  KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235

Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
           S+   G FGN YST  A+Q L  +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259


>ref|NP_001123930.1| transcobalamin-2 precursor [Mus musculus].
          Length = 430

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
 Frame = +1

Query: 94  LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
           L  LLL S +   L + CV+   D   +    + L+  MD L  EQ+       + LS  
Sbjct: 4   LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63

Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
            AG +       L    Q  + R   S+        L+ G LAL +LA  A C+    R 
Sbjct: 64  QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122

Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
                L+ +L    ++E K +   H G+P TNYYQ    +L LC+ +     S V    +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181

Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
             E+  F   GH SVDT A+A LALTC++R   N  ++  I  +      IE++  KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235

Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
           S+   G FGN YST  A+Q L  +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259


>ref|NP_056564.1| transcobalamin-2 precursor [Mus musculus].
          Length = 430

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
 Frame = +1

Query: 94  LVGLLLFSLIPSQLCQSCVVSEKDYSHL----RLLISAMDNL--EQIRGIYGASILLSQR 255
           L  LLL S +   L + CV+   D   +    + L+  MD L  EQ+       + LS  
Sbjct: 4   LKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSM 63

Query: 256 LAGIQNPSLEEELSQRIQDDMNRRDMSN--------LTSGQLALIILAFGA-CKNPDVRF 408
            AG +       L    Q  + R   S+        L+ G LAL +LA  A C+    R 
Sbjct: 64  QAGTKEDLYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSR- 122

Query: 409 IHDHHLVEKLGEKFKEEIKNM-EIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHY-F 582
                L+ +L    ++E K +   H G+P TNYYQ    +L LC+ +     S V    +
Sbjct: 123 -KGDRLISQLKWFLEDEKKAIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLY 181

Query: 583 NPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKI-Q 759
             E+  F   GH SVDT A+A LALTC++R   N  ++  I  +      IE++  KI +
Sbjct: 182 AVEHDYFTYQGHVSVDTEAMAGLALTCLERFNFNSDLRPRITMA------IETVREKILK 235

Query: 760 SEKNGGLFGNAYSTGEAMQALFVA 831
           S+   G FGN YST  A+Q L  +
Sbjct: 236 SQAPEGYFGNIYSTPLALQMLMTS 259


>ref|NP_032144.2| gastric intrinsic factor precursor [Mus musculus].
          Length = 417

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 78/281 (27%), Positives = 124/281 (44%), Gaps = 14/281 (4%)
 Frame = +1

Query: 142 SCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMN 321
           SC V       +  L + M+N          SIL++  LAG  N   ++ L+ ++     
Sbjct: 25  SCSVPPDQQPWVDGLQALMENSVTDSDFPNPSILIAMNLAGAYNVEAQKLLTYQLMAS-- 82

Query: 322 RRDMSNLTSGQLALIILAF-GACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN----G 486
             D ++LTSGQLAL ++A   +C++P              G K    +K ME  +    G
Sbjct: 83  --DSADLTSGQLALTVMALTSSCRDP--------------GSKVSTLLKKMENWSPSSPG 126

Query: 487 NPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCV 666
              + +Y     +L LC      ++     +             F+VDTGAVA LALTC+
Sbjct: 127 AESSAFYGPGLAILALCQKSSEATLPIAVRFAKTLMME---PSPFNVDTGAVATLALTCM 183

Query: 667 KRSISNGKIKAAIKDSDTIQKYIESLVHKIQSE-KNGGLFGNAYSTGEAMQALFVASDYY 843
              I  G  +      D   + ++++V KI    K  G+ G+ YSTG AMQAL V  +  
Sbjct: 184 YNKIPVGSQE---NYRDLFGQALKAIVEKISLRIKADGIIGDIYSTGLAMQALSVTPEQP 240

Query: 844 QNESNCQETLDAVFN-----TFLREYSVYQ---SLQPRSYL 942
             + +C++T+  + N      F    S+ Q   SL+ ++YL
Sbjct: 241 TKKWDCEKTMHTILNEIKQGKFQNPMSIAQILPSLKGKTYL 281


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,283,343
Number of extensions: 815554
Number of successful extensions: 2192
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2184
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003360619.1| PREDICTED: transcobalamin-1 isoform 1 [Sus s...   541   e-161
Alignment   gi|XP_003360620.1| PREDICTED: transcobalamin-1 isoform 2 [Sus s...   461   e-137
Alignment   gi|XP_003122730.1| PREDICTED: gastric intrinsic factor [Sus scr...    90   2e-18
Alignment   gi|XP_001929348.1| PREDICTED: transcobalamin-2 isoform 1 [Sus s...    59   6e-09
Alignment   gi|XP_003361653.1| PREDICTED: transcobalamin-2-like [Sus scrofa].     56   4e-08

>ref|XP_003360619.1| PREDICTED: transcobalamin-1 isoform 1 [Sus scrofa].
          Length = 324

 Score =  541 bits (1395), Expect(2) = e-161
 Identities = 272/273 (99%), Positives = 272/273 (99%)
 Frame = +1

Query: 70  MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 249
           MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS
Sbjct: 1   MRQSHQLPLVGLLLFSLIPSQLCQSCVVSEKDYSHLRLLISAMDNLEQIRGIYGASILLS 60

Query: 250 QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 429
           QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV
Sbjct: 61  QRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGACKNPDVRFIHDHHLV 120

Query: 430 EKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 609
           EKLGEKFKEEIKNMEIHN NPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL
Sbjct: 121 EKLGEKFKEEIKNMEIHNSNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPENKNFNL 180

Query: 610 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 789
           SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN
Sbjct: 181 SGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFGN 240

Query: 790 AYSTGEAMQALFVASDYYQNESNCQETLDAVFN 888
           AYSTGEAMQALFVASDYYQNESNCQETLDAVFN
Sbjct: 241 AYSTGEAMQALFVASDYYQNESNCQETLDAVFN 273



 Score = 46.6 bits (109), Expect(2) = e-161
 Identities = 23/37 (62%), Positives = 24/37 (64%)
 Frame = +3

Query: 888 HISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATCPQS 998
           +ISQGVFR             GKTYLDVNKTATCPQS
Sbjct: 274 NISQGVFRLPIAAAQILPALLGKTYLDVNKTATCPQS 310


>ref|XP_003360620.1| PREDICTED: transcobalamin-1 isoform 2 [Sus scrofa].
          Length = 282

 Score =  461 bits (1185), Expect(2) = e-137
 Identities = 230/231 (99%), Positives = 230/231 (99%)
 Frame = +1

Query: 196 MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA 375
           MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA
Sbjct: 1   MDNLEQIRGIYGASILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILA 60

Query: 376 FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNY 555
           FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN NPLTNYYQLSFDVLTLCLFRGNY
Sbjct: 61  FGACKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHNSNPLTNYYQLSFDVLTLCLFRGNY 120

Query: 556 SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI 735
           SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI
Sbjct: 121 SISNVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYI 180

Query: 736 ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN 888
           ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN
Sbjct: 181 ESLVHKIQSEKNGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFN 231



 Score = 46.6 bits (109), Expect(2) = e-137
 Identities = 23/37 (62%), Positives = 24/37 (64%)
 Frame = +3

Query: 888 HISQGVFRXXXXXXXXXXXXXGKTYLDVNKTATCPQS 998
           +ISQGVFR             GKTYLDVNKTATCPQS
Sbjct: 232 NISQGVFRLPIAAAQILPALLGKTYLDVNKTATCPQS 268


>ref|XP_003122730.1| PREDICTED: gastric intrinsic factor [Sus scrofa].
          Length = 425

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 2/258 (0%)
 Frame = +1

Query: 235  SILLSQRLAGIQNPSLEEELSQRIQDDMNRRDMSNLTSGQLALIILAF-GACKNPDVRFI 411
            SIL++  LAG  N   +E L+ ++       + S+LT+GQLAL I+A   +C++P  R  
Sbjct: 64   SILIAMNLAGAYNTEAQELLTYKLMAS----NTSDLTTGQLALTIMALTSSCRDPGNR-- 117

Query: 412  HDHHLVEKLGEKFKEEIKNMEIHNGNPLTNYYQLSFDVLTLCLFRGNYSISNVTHYFNPE 591
                +    G+       +++ H     + +Y+ S  +LTLC      ++     +    
Sbjct: 118  ----IAILQGQMENWAPPSLDTH----ASTFYEPSLGILTLCQNNPEKTLPLAARFAKTL 169

Query: 592  NKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKA-AIKDSDTIQKYIESLVHKIQSEK 768
              N   S  F++DTGA+A LALTC+   I  G  +      S  ++  +E++  +IQ   
Sbjct: 170  LAN---SSPFNMDTGAMATLALTCMYNKIPVGSEEGYRALFSQVLRNTVENISMRIQ--- 223

Query: 769  NGGLFGNAYSTGEAMQALFVASDYYQNESNCQETLDAVFNTFLREYSVYQSLQPRSYLPC 948
            + G+ GN YSTG AMQAL V  +    E +CQ+T+D V  T ++E   +  +     LP 
Sbjct: 224  DNGIIGNIYSTGLAMQALSVTPERPNKEWDCQKTMDTVL-TEIKEGKFHNPMAIAQILPS 282

Query: 949  WERPTWTLTKLLLVPKVS 1002
             +  T+     L VP VS
Sbjct: 283  LKGKTY-----LDVPHVS 295


>ref|XP_001929348.1| PREDICTED: transcobalamin-2 isoform 1 [Sus scrofa].
          Length = 429

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
 Frame = +1

Query: 235 SILLSQRLAGIQNP--------SLEEELSQRIQDDMNRRDMSNLTS----GQLALIILAF 378
           SI +  RL+G+Q          SL+    Q +   ++  D S+  +    GQLAL +LA 
Sbjct: 53  SIYVGLRLSGLQAGPKEAHYLHSLKLSYQQSLLRSVSSNDKSDSEAKPSMGQLALYLLAL 112

Query: 379 GA-CKNPDVRFIHDHHLVEKLGEKFKEEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRG 549
            A C+    R      LV +L ++F E  K    HN  G+P T+YYQ    +L LCL R 
Sbjct: 113 RANCEFVGSR--KGDRLVSQL-KRFLETEKRAIGHNHKGHPHTSYYQYGLSILALCLHRK 169

Query: 550 NYSIS-------NVTHYFNPENKNFNLSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIK 708
               S        + H  +P+          SVDT A+A LA +C++  +SN  +    +
Sbjct: 170 RVHDSVVGKLLYAIEHEQHPD---------LSVDTTAMAGLAFSCLE--VSNLNLNQRDR 218

Query: 709 DSDTIQKYIESLVHKIQSEKNGGLFGNAYSTGEAMQALFVA 831
            +  IQ+  E +   ++++   G FGN YST  A+Q L  +
Sbjct: 219 IALAIQRVQERI---LRAQTPEGHFGNVYSTPLALQFLMTS 256


>ref|XP_003361653.1| PREDICTED: transcobalamin-2-like [Sus scrofa].
          Length = 429

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
 Frame = +1

Query: 277 SLEEELSQRIQDDMNRRDMSNLTSGQLALIILAFGA-CKNPDVRFIHDHHLVEKLGEKFK 453
           S ++ L + +  +      +  + GQLAL +LA  A C+    R      LV +L ++F 
Sbjct: 79  SYQQSLLRSVSSNDKSDSEAKPSMGQLALYLLALRANCEFVGSR--KGDRLVSQL-KRFL 135

Query: 454 EEIKNMEIHN--GNPLTNYYQLSFDVLTLCLFRGNYSIS-------NVTHYFNPENKNFN 606
           E  K    HN  G+P T+YYQ    +L LCL R     S        + H  +P+     
Sbjct: 136 ETEKRAIGHNHKGHPHTSYYQYGLSILALCLHRKRVHDSVVGKLLYAIEHEQHPD----- 190

Query: 607 LSGHFSVDTGAVAVLALTCVKRSISNGKIKAAIKDSDTIQKYIESLVHKIQSEKNGGLFG 786
                SVDT A+A LA +C++  +SN       + +  IQ+  E +   ++++   G FG
Sbjct: 191 ----LSVDTTAMAGLAFSCLE--VSNLXXXXXXRIALAIQRVQERI---LRAQTPEGHFG 241

Query: 787 NAYSTGEAMQALFVA 831
           N YST  A+Q L  +
Sbjct: 242 NVYSTPLALQFLMTS 256


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,446,274
Number of extensions: 589434
Number of successful extensions: 1685
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 7
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007251
         (1037 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892341.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   377   e-102

>gb|GL892341.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1215
          Length = 20981

 Score =  377 bits (190), Expect = e-102
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                         
Query: 628   gatactggagccgtggctgttcttgctctgacctgtgtgaagaggagtataagcaatggg 687
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17262 gatactggagccgtggctgttcttgctctgacctgtgtgaagaggagtataagcaatggg 17321

                                                                         
Query: 688   aagattaaagcagctattaaggattcagacacaatccaaaaatatatagagtcactggta 747
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17322 aagattaaagcagctattaaggattcagacacaatccaaaaatatatagagtcactggta 17381

                                                                         
Query: 748   cataagatccagtctgagaaaaatggtggtctctttggaaacgcgtatagcacaggagaa 807
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17382 cataagatccagtctgagaaaaatggtggtctctttggaaacgcgtatagcacaggagaa 17441

                       
Query: 808   gctatgcagg 817
             ||||||||||
Sbjct: 17442 gctatgcagg 17451



 Score =  359 bits (181), Expect = 2e-96
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                         
Query: 148   gtggtaagcgagaaagactactcccatctaaggctgctgataagcgcaatggacaattta 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13990 gtggtaagcgagaaagactactcccatctaaggctgctgataagcgcaatggacaattta 14049

                                                                         
Query: 208   gaacaaatcagaggaatctatggagccagcatcctgttgtcgcaaagacttgccgggatt 267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14050 gaacaaatcagaggaatctatggagccagcatcctgttgtcgcaaagacttgccgggatt 14109

                                                                         
Query: 268   cagaacccaagcctcgaagaagagctgagtcagcgaatccaagacgatatgaacaggaga 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14110 cagaacccaagcctcgaagaagagctgagtcagcgaatccaagacgatatgaacaggaga 14169

              
Query: 328   g 328
             |
Sbjct: 14170 g 14170



 Score =  353 bits (178), Expect = 1e-94
 Identities = 185/186 (99%), Gaps = 1/186 (0%)
 Strand = Plus / Plus

                                                                         
Query: 815   aggctctctttgtcgcatcagactattaccaaaatgaatcaaattgccaagaaactctgg 874
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19781 aggctctctttgtcgcatcagactattaccaaaatgaatcaaattgccaagaaactctgg 19840

                                                                         
Query: 875   acgcggtgtttaaca-catttctcagggagtattccgtctaccaatcgctgcagcccaga 933
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19841 acgcggtgtttaacaacatttctcagggagtattccgtctaccaatcgctgcagcccaga 19900

                                                                         
Query: 934   tcttacctgccctgttgggaaagacctacctggacgttaacaaaactgctacttgtcccc 993
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19901 tcttacctgccctgttgggaaagacctacctggacgttaacaaaactgctacttgtcccc 19960

                   
Query: 994   aaagtc 999
             ||||||
Sbjct: 19961 aaagtc 19966



 Score =  303 bits (153), Expect = 1e-79
 Identities = 156/157 (99%)
 Strand = Plus / Plus

                                                                         
Query: 472   gaaatacacaacggcaatccgctgactaactattaccagctcagcttcgacgttttgacc 531
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16596 gaaatacacaacagcaatccgctgactaactattaccagctcagcttcgacgttttgacc 16655

                                                                         
Query: 532   ttgtgtctgttcagagggaactattcaatcagcaatgtcactcattacttcaatcctgaa 591
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16656 ttgtgtctgttcagagggaactattcaatcagcaatgtcactcattacttcaatcctgaa 16715

                                                  
Query: 592   aataaaaactttaatcttagcggccatttctcagtgg 628
             |||||||||||||||||||||||||||||||||||||
Sbjct: 16716 aataaaaactttaatcttagcggccatttctcagtgg 16752



 Score =  293 bits (148), Expect = 1e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     ttaccctatgtccatcacccaataaatagacagtcaagccctcgccattcccatacaact 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10871 ttaccctatgtccatcacccaataaatagacagtcaagccctcgccattcccatacaact 10930

                                                                         
Query: 61    gctggagagatgagacaatcacaccagctgcccctcgtggggctcctattgttctctctc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10931 gctggagagatgagacaatcacaccagctgcccctcgtggggctcctattgttctctctc 10990

                                         
Query: 121   attccaagccaactatgccagagctgtg 148
             ||||||||||||||||||||||||||||
Sbjct: 10991 attccaagccaactatgccagagctgtg 11018



 Score =  281 bits (142), Expect = 4e-73
 Identities = 145/146 (99%)
 Strand = Plus / Plus

                                                                         
Query: 327   agacatgtccaatttaacctcgggacagcttgccttgattattctggcttttggagcatg 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15472 agacatgtccaatttaacctcgggacagcttgccttgattattctggcttttggagcatg 15531

                                                                         
Query: 387   caaaaaccctgatgtcaggtttatacacgatcatcaccttgttgagaaactaggggaaaa 446
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15532 caaaaaccctgatgtcaggtttatacatgatcatcaccttgttgagaaactaggggaaaa 15591

                                       
Query: 447   gttcaaagaagaaattaagaacatgg 472
             ||||||||||||||||||||||||||
Sbjct: 15592 gttcaaagaagaaattaagaacatgg 15617


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,994,952
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 6
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)