Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus]. 444 e-125
Alignment gi|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus]. 444 e-125
Alignment gi|NP_001193461.1| folate receptor alpha [Bos taurus]. 412 e-115
Alignment gi|NP_001068793.1| folate receptor beta [Bos taurus]. 395 e-110
Alignment gi|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, p... 133 4e-31
>ref|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus].
Length = 241
Score = 444 bits (1142), Expect = e-125
Identities = 191/241 (79%), Positives = 210/241 (87%), Gaps = 6/241 (2%)
Frame = +2
Query: 467 MAWRLT------LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWR 628
MAW++T L RA++D+LNVCMDAKHHK +P PED LH+QCSPWR
Sbjct: 1 MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60
Query: 629 KNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVN 808
KN+CCSVNTS+EAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVN
Sbjct: 61 KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120
Query: 809 QKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFY 988
Q+WR+ER+L VPLCKEDCQ WWEDCRTSYTCKSNWHKGWNWTSGYNQCPV AACHRFDFY
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180
Query: 989 FPTPAALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQG 1168
FPTPAALCNEIWSHS++VS+YSRGSGRCIQMWFDP QGNPNE VAR+YAEN +G+ QG
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240
Query: 1169 I 1171
I
Sbjct: 241 I 241
>ref|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus].
Length = 241
Score = 444 bits (1142), Expect = e-125
Identities = 191/241 (79%), Positives = 210/241 (87%), Gaps = 6/241 (2%)
Frame = +2
Query: 467 MAWRLT------LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWR 628
MAW++T L RA++D+LNVCMDAKHHK +P PED LH+QCSPWR
Sbjct: 1 MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60
Query: 629 KNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVN 808
KN+CCSVNTS+EAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVN
Sbjct: 61 KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120
Query: 809 QKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFY 988
Q+WR+ER+L VPLCKEDCQ WWEDCRTSYTCKSNWHKGWNWTSGYNQCPV AACHRFDFY
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180
Query: 989 FPTPAALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQG 1168
FPTPAALCNEIWSHS++VS+YSRGSGRCIQMWFDP QGNPNE VAR+YAEN +G+ QG
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240
Query: 1169 I 1171
I
Sbjct: 241 I 241
>ref|NP_001193461.1| folate receptor alpha [Bos taurus].
Length = 251
Score = 412 bits (1059), Expect = e-115
Identities = 176/226 (77%), Positives = 196/226 (86%), Gaps = 1/226 (0%)
Frame = +2
Query: 467 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 643
MAW++T L R + +LNVCM+A++HK KP PEDKLH QCSPW+KN+CC
Sbjct: 1 MAWKITPLLCLLVCVAAVGAARPGTQLLNVCMNARYHKEKPGPEDKLHGQCSPWKKNACC 60
Query: 644 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 823
VNTS+EAHKDIS LYRF+WDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVNQ WR+
Sbjct: 61 FVNTSIEAHKDISSLYRFDWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVNQSWRK 120
Query: 824 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 1003
ERILNVPLCKEDCQ WWEDCRTSYTCKSNWH+GW+WTSGYNQCPV AACHRFDFYFPTPA
Sbjct: 121 ERILNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGYNQCPVKAACHRFDFYFPTPA 180
Query: 1004 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAEN 1141
ALCNEIWSHS++ S+YSRGSGRCIQMWFDP NPNE VAR+YAE+
Sbjct: 181 ALCNEIWSHSYKASNYSRGSGRCIQMWFDPILDNPNEEVARFYAES 226
>ref|NP_001068793.1| folate receptor beta [Bos taurus].
Length = 253
Score = 395 bits (1014), Expect = e-110
Identities = 172/250 (68%), Positives = 194/250 (77%), Gaps = 1/250 (0%)
Frame = +2
Query: 467 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 643
M W+LT L R ++D+LNVCMDAKHHK +P PEDKLH+QC+PW+KN+CC
Sbjct: 1 MPWKLTPLLLFLGWMTSVCSARTRTDLLNVCMDAKHHKAEPGPEDKLHNQCTPWKKNACC 60
Query: 644 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 823
S S E HKD S LY F WDHCGKMEPAC+RHFIQD CLYECSPNLGPWIQEVNQKWR+
Sbjct: 61 SARVSQELHKDTSSLYNFTWDHCGKMEPACQRHFIQDNCLYECSPNLGPWIQEVNQKWRK 120
Query: 824 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 1003
ER LNVPLCKEDCQ WWEDCRTSYTCKSNWH+GW+WTSG N+CP C F+ YFPTPA
Sbjct: 121 ERFLNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGSNKCPTGTICRTFEAYFPTPA 180
Query: 1004 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLL 1183
ALC +WSHS+++S+YSRGSGRCIQMWFDPA GNPNE VAR+YA A A QGI PLL
Sbjct: 181 ALCEGLWSHSYKLSNYSRGSGRCIQMWFDPALGNPNEEVARFYALALTAEAWPQGIRPLL 240
Query: 1184 TNLTEMVKHW 1213
L M+ W
Sbjct: 241 LCLALMLSLW 250
>ref|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, partial [Bos taurus].
Length = 109
Score = 133 bits (334), Expect = 4e-31
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +2
Query: 539 DMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHCGK 718
++LNVCM+AK HKP+P PE +L+++C PW+ N+CC+ +TS EAH D+S LY F+ HCG
Sbjct: 22 ELLNVCMNAKPHKPEPGPEAELYEECIPWKDNACCTASTSWEAHLDVSLLYNFSLVHCGL 81
Query: 719 MEPACKRHFIQDTCLYECSPNLGPWIQE 802
M P C+RHF+Q C Y+CSPNLGPWIQ+
Sbjct: 82 MMPDCQRHFLQAICFYQCSPNLGPWIQQ 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,595,996
Number of extensions: 1514302
Number of successful extensions: 5638
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5632
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult)... 406 e-113
Alignment gi|XP_534020.2| PREDICTED: similar to Folate receptor beta prec... 394 e-110
Alignment gi|XP_852006.1| PREDICTED: similar to Folate receptor beta prec... 285 1e-76
Alignment gi|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta)... 199 5e-51
>ref|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult) [Canis familiaris].
Length = 252
Score = 406 bits (1044), Expect = e-113
Identities = 176/226 (77%), Positives = 196/226 (86%)
Frame = +2
Query: 527 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 706
R ++++LNVCMDAKHHK KPSPED LH QCSPW+KNSCC NTS EAHKDISYLYRFNW+
Sbjct: 23 RPRTELLNVCMDAKHHKEKPSPEDGLHKQCSPWKKNSCCFANTSREAHKDISYLYRFNWN 82
Query: 707 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 886
HCG M PACK+HFIQDTCLYECSPNLGPWIQEVNQ WR+ERIL+VPLCKEDC+ WW+DCR
Sbjct: 83 HCGSMTPACKKHFIQDTCLYECSPNLGPWIQEVNQSWRKERILHVPLCKEDCEQWWQDCR 142
Query: 887 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 1066
TSYTCKSNWHKGWNWTSGYNQCP AACH F FYFPT AALC+EIWSHS++VS+YSRGSG
Sbjct: 143 TSYTCKSNWHKGWNWTSGYNQCPEGAACHPFHFYFPTSAALCSEIWSHSYKVSNYSRGSG 202
Query: 1067 RCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLTNLTEMV 1204
RCIQMWFDPAQGNPNE VAR+YA + A +GP L +L M+
Sbjct: 203 RCIQMWFDPAQGNPNEEVARFYA-RAMSEATHCVLGPPLLSLALML 247
>ref|XP_534020.2| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
(Folate receptor 2) (Folate receptor, fetal/placental)
(Placental folate-binding protein) (FBP) [Canis
familiaris].
Length = 263
Score = 394 bits (1013), Expect = e-110
Identities = 170/251 (67%), Positives = 194/251 (77%), Gaps = 1/251 (0%)
Frame = +2
Query: 464 NMAWRL-TLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSC 640
+MAWRL L R ++D+LNVCMDAKHHK KP PEDKLH QC+PWRK +C
Sbjct: 8 DMAWRLIALVLLLAWTAPTCRARVRTDLLNVCMDAKHHKAKPGPEDKLHAQCTPWRKKAC 67
Query: 641 CSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWR 820
C+V+TS E HKD S LY F WDHC KMEPACKRHFIQD CLYECSPNLGPWIQEVNQ WR
Sbjct: 68 CTVSTSQELHKDTSRLYNFTWDHCSKMEPACKRHFIQDNCLYECSPNLGPWIQEVNQSWR 127
Query: 821 RERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTP 1000
+ERIL VPLC+EDC+ WW+DCRTSYTCKSNWH+GWNWTSG N+CP C F+ YFPTP
Sbjct: 128 KERILQVPLCREDCEQWWQDCRTSYTCKSNWHRGWNWTSGVNKCPARTTCRTFEAYFPTP 187
Query: 1001 AALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPL 1180
AALC IW HS++ ++Y RGSGRCIQMWFDPAQGNPNE VAR+YA +AG + QGI L
Sbjct: 188 AALCEGIWDHSYKATNYRRGSGRCIQMWFDPAQGNPNEEVARFYAGARNAGVMPQGIEHL 247
Query: 1181 LTNLTEMVKHW 1213
L +L M+ W
Sbjct: 248 LLSLAPMLYLW 258
>ref|XP_852006.1| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
(Folate receptor 2) (Folate receptor, fetal/placental)
(Placental folate-binding protein) (FBP) [Canis
familiaris].
Length = 223
Score = 285 bits (728), Expect = 1e-76
Identities = 113/157 (71%), Positives = 132/157 (84%)
Frame = +2
Query: 596 DKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECS 775
+ L +C+PWRK +CC+V+TS E HKD S LY F WDHCGKMEPACKRHFIQD CLYECS
Sbjct: 49 EPLRSRCTPWRKKACCTVSTSQELHKDTSRLYNFTWDHCGKMEPACKRHFIQDNCLYECS 108
Query: 776 PNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCP 955
PNLGPWIQEVNQ WR+ERIL+VPLC+EDC+ WW+DCRTSYTCKSNWH+GWNWTSG N+CP
Sbjct: 109 PNLGPWIQEVNQSWRKERILHVPLCREDCEQWWQDCRTSYTCKSNWHRGWNWTSGVNKCP 168
Query: 956 VSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 1066
C ++ YFPTPAALC IW HS++ ++YSRGSG
Sbjct: 169 ARTTCRTYEAYFPTPAALCEGIWDHSYKATNYSRGSG 205
>ref|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta) isoform 1 [Canis
familiaris].
Length = 219
Score = 199 bits (506), Expect = 5e-51
Identities = 79/137 (57%), Positives = 101/137 (73%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A ++LNVCM KHHK +P PEDKL+++C PW + +CC+ +TS AH D+S LY F+ H
Sbjct: 19 AGDELLNVCMKTKHHKREPGPEDKLYEECIPWAEKACCTASTSWHAHLDVSLLYNFSLLH 78
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CG M P C+ HFIQ C YECSPNLGPWIQ+V + ERI + PLC+EDC+ WWEDCRT
Sbjct: 79 CGLMMPGCEEHFIQAVCFYECSPNLGPWIQKVGSSGQGERIRDAPLCREDCEQWWEDCRT 138
Query: 890 SYTCKSNWHKGWNWTSG 940
SYTC+S+W W+W+ G
Sbjct: 139 SYTCRSDWLGSWDWSRG 155
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,663,752
Number of extensions: 1395450
Number of successful extensions: 5765
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5757
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057936.1| folate receptor alpha precursor [Homo sapiens]. 402 e-112
Alignment gi|NP_057937.1| folate receptor alpha precursor [Homo sapiens]. 402 e-112
Alignment gi|NP_000793.1| folate receptor alpha precursor [Homo sapiens]. 402 e-112
Alignment gi|NP_057941.1| folate receptor alpha precursor [Homo sapiens]. 402 e-112
Alignment gi|NP_001107008.1| folate receptor beta precursor [Homo sapiens]. 394 e-109
Alignment gi|NP_001107007.1| folate receptor beta precursor [Homo sapiens]. 394 e-109
Alignment gi|NP_001107006.1| folate receptor beta precursor [Homo sapiens]. 394 e-109
Alignment gi|NP_000794.3| folate receptor beta precursor [Homo sapiens]. 394 e-109
Alignment gi|NP_000795.2| folate receptor gamma precursor [Homo sapiens]. 390 e-108
Alignment gi|NP_001186135.1| probable folate receptor delta [Homo sapiens]. 293 3e-79
>ref|NP_057936.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 402 bits (1033), Expect = e-112
Identities = 168/216 (77%), Positives = 190/216 (87%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29 ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89 CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWHKGWNWTSG+N+C V AAC F FYFPTP LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208
Query: 1070 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 1177
CIQMWFDPAQGNPNE VAR+YA A G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238
>ref|NP_057937.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 402 bits (1033), Expect = e-112
Identities = 168/216 (77%), Positives = 190/216 (87%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29 ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89 CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWHKGWNWTSG+N+C V AAC F FYFPTP LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208
Query: 1070 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 1177
CIQMWFDPAQGNPNE VAR+YA A G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238
>ref|NP_000793.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 402 bits (1033), Expect = e-112
Identities = 168/216 (77%), Positives = 190/216 (87%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29 ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89 CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWHKGWNWTSG+N+C V AAC F FYFPTP LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208
Query: 1070 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 1177
CIQMWFDPAQGNPNE VAR+YA A G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238
>ref|NP_057941.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 402 bits (1033), Expect = e-112
Identities = 168/216 (77%), Positives = 190/216 (87%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29 ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89 CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWHKGWNWTSG+N+C V AAC F FYFPTP LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208
Query: 1070 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 1177
CIQMWFDPAQGNPNE VAR+YA A G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238
>ref|NP_001107008.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 394 bits (1012), Expect = e-109
Identities = 167/229 (72%), Positives = 193/229 (84%), Gaps = 2/229 (0%)
Frame = +2
Query: 533 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 712
++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24 RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83
Query: 713 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 892
GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84 GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143
Query: 893 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 1072
+TCKSNWH+GW+WTSG N+CP A C F+ YFPTPAALC +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203
Query: 1073 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLLTNLTEMVKHW 1213
IQMWFD AQGNPNE VAR+YA + +AG + G G LL +L M++ W
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLLLSLALMLQLW 252
>ref|NP_001107007.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 394 bits (1012), Expect = e-109
Identities = 167/229 (72%), Positives = 193/229 (84%), Gaps = 2/229 (0%)
Frame = +2
Query: 533 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 712
++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24 RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83
Query: 713 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 892
GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84 GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143
Query: 893 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 1072
+TCKSNWH+GW+WTSG N+CP A C F+ YFPTPAALC +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203
Query: 1073 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLLTNLTEMVKHW 1213
IQMWFD AQGNPNE VAR+YA + +AG + G G LL +L M++ W
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLLLSLALMLQLW 252
>ref|NP_001107006.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 394 bits (1012), Expect = e-109
Identities = 167/229 (72%), Positives = 193/229 (84%), Gaps = 2/229 (0%)
Frame = +2
Query: 533 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 712
++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24 RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83
Query: 713 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 892
GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84 GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143
Query: 893 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 1072
+TCKSNWH+GW+WTSG N+CP A C F+ YFPTPAALC +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203
Query: 1073 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLLTNLTEMVKHW 1213
IQMWFD AQGNPNE VAR+YA + +AG + G G LL +L M++ W
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLLLSLALMLQLW 252
>ref|NP_000794.3| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 394 bits (1012), Expect = e-109
Identities = 167/229 (72%), Positives = 193/229 (84%), Gaps = 2/229 (0%)
Frame = +2
Query: 533 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 712
++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24 RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83
Query: 713 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 892
GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84 GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143
Query: 893 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 1072
+TCKSNWH+GW+WTSG N+CP A C F+ YFPTPAALC +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203
Query: 1073 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLLTNLTEMVKHW 1213
IQMWFD AQGNPNE VAR+YA + +AG + G G LL +L M++ W
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLLLSLALMLQLW 252
>ref|NP_000795.2| folate receptor gamma precursor [Homo sapiens].
Length = 245
Score = 390 bits (1003), Expect = e-108
Identities = 163/215 (75%), Positives = 189/215 (87%)
Frame = +2
Query: 527 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 706
RA++D+LNVCM+AKHHK +PSPED+L+ QCSPW+KN+CC+ +TS E HKD S LY FNWD
Sbjct: 28 RARTDLLNVCMNAKHHKTQPSPEDELYGQCSPWKKNACCTASTSQELHKDTSRLYNFNWD 87
Query: 707 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 886
HCGKMEP CKRHFIQD+CLYECSPNLGPWI++VNQ WR+ERILNVPLCKEDC+ WWEDCR
Sbjct: 88 HCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQVNQSWRKERILNVPLCKEDCERWWEDCR 147
Query: 887 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 1066
TSYTCKSNWHKGWNWTSG N+CP A C F+ YFPTPAALC +WSHSF+VS+YSRGSG
Sbjct: 148 TSYTCKSNWHKGWNWTSGINECPAGALCSTFESYFPTPAALCEGLWSHSFKVSNYSRGSG 207
Query: 1067 RCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGI 1171
RCIQMWFD AQGNPNE VA++YA +AGA ++GI
Sbjct: 208 RCIQMWFDSAQGNPNEEVAKFYAAAMNAGAPSRGI 242
>ref|NP_001186135.1| probable folate receptor delta [Homo sapiens].
Length = 250
Score = 293 bits (749), Expect = 3e-79
Identities = 124/211 (58%), Positives = 155/211 (73%), Gaps = 7/211 (3%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A ++LN+CM+AKHHK PSPEDKL+++C PW+ N+CC++ TS EAH D+S LY F+ H
Sbjct: 19 AGDELLNICMNAKHHKRVPSPEDKLYEECIPWKDNACCTLTTSWEAHLDVSPLYNFSLFH 78
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQ-------EVNQKWRRERILNVPLCKEDCQI 868
CG + P C++HFIQ C YECSPNLGPWIQ EV + ER++NVPLC+EDC+
Sbjct: 79 CGLLMPGCRKHFIQAICFYECSPNLGPWIQPVGSLGWEVAPSGQGERVVNVPLCQEDCEE 138
Query: 869 WWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSS 1048
WWEDCR SYTCKSNW GW+W+ G N+CP A C F YFPTPA LC + WS+SF+ S
Sbjct: 139 WWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGAQCLPFSHYFPTPADLCEKTWSNSFKASP 198
Query: 1049 YSRGSGRCIQMWFDPAQGNPNEAVARYYAEN 1141
R SGRC+Q WF+PAQGNPN AVAR +A +
Sbjct: 199 ERRNSGRCLQKWFEPAQGNPNVAVARLFASS 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,622,693
Number of extensions: 1356264
Number of successful extensions: 5504
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5486
Number of HSP's successfully gapped: 10
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032060.2| folate receptor alpha precursor [Mus musculus]. 402 e-112
Alignment gi|NP_032061.1| folate receptor beta precursor [Mus musculus]. 376 e-104
Alignment gi|NP_075026.1| probable folate receptor delta isoform 1 [Mus m... 242 6e-64
Alignment gi|NP_789777.1| probable folate receptor delta isoform 2 [Mus m... 175 9e-44
>ref|NP_032060.2| folate receptor alpha precursor [Mus musculus].
Length = 255
Score = 402 bits (1032), Expect = e-112
Identities = 171/223 (76%), Positives = 196/223 (87%)
Frame = +2
Query: 527 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 706
RA++++LNVCMDAKHHK KP PED LHDQCSPW+ NSCCS NTS EAHKDISYLYRFNW+
Sbjct: 26 RARTELLNVCMDAKHHKEKPGPEDNLHDQCSPWKTNSCCSTNTSQEAHKDISYLYRFNWN 85
Query: 707 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 886
HCG M CKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ERIL+VPLCKEDCQ WWEDC+
Sbjct: 86 HCGTMTSECKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERILDVPLCKEDCQQWWEDCQ 145
Query: 887 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 1066
+S+TCKSNWHKGWNW+SG+N+CPV A+CH F FYFPT AALC EIWSHS+++S+YSRGSG
Sbjct: 146 SSFTCKSNWHKGWNWSSGHNECPVGASCHPFTFYFPTSAALCEEIWSHSYKLSNYSRGSG 205
Query: 1067 RCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLTNLT 1195
RCIQMWFDPAQGNPNE VAR+YAE +GA G PLL +L+
Sbjct: 206 RCIQMWFDPAQGNPNEEVARFYAE-AMSGAGFHGTWPLLCSLS 247
>ref|NP_032061.1| folate receptor beta precursor [Mus musculus].
Length = 251
Score = 376 bits (965), Expect = e-104
Identities = 161/249 (64%), Positives = 192/249 (77%)
Frame = +2
Query: 467 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 646
MAW+ T R ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CCS
Sbjct: 1 MAWKQTPLLLLVYMVTTGSGRDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCS 60
Query: 647 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 826
VNTS E HK S LY FNWDHCGKMEPACK HFIQD+CLYECSPNLGPWIQ+V+Q WR+E
Sbjct: 61 VNTSQELHKADSRLY-FNWDHCGKMEPACKSHFIQDSCLYECSPNLGPWIQQVDQSWRKE 119
Query: 827 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 1006
R L+VPLCKEDC WWE CRTS+TCK +WHKGW+W+SG N+CP +A CH F++YFPTPA+
Sbjct: 120 RFLDVPLCKEDCHQWWEACRTSFTCKRDWHKGWDWSSGINKCPNTAPCHTFEYYFPTPAS 179
Query: 1007 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 1186
LC +WSHS++VS+YSRGSGRCIQMWFD QGNPNE V ++YA +G V L+
Sbjct: 180 LCEGLWSHSYKVSNYSRGSGRCIQMWFDSTQGNPNEDVVKFYASFMTSGTVPHAAVLLVP 239
Query: 1187 NLTEMVKHW 1213
+L ++ W
Sbjct: 240 SLAPVLSLW 248
>ref|NP_075026.1| probable folate receptor delta isoform 1 [Mus musculus].
Length = 244
Score = 242 bits (617), Expect = 6e-64
Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 1/203 (0%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A +L+VCM++K HK +P PED+L+ +C PW N+CC+ +TS EAH + L+ F+ H
Sbjct: 19 AGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLEEPLLFNFSMMH 78
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE-RILNVPLCKEDCQIWWEDCR 886
CG + PAC++HFIQ C +ECSPNLGPWIQ V + E R+ VPLC+EDC+ WW C
Sbjct: 79 CGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQEDCEDWWRACH 138
Query: 887 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 1066
+S TCKSNW GW+W+ CP C F ++FPTP LC +IW+++F+ S R SG
Sbjct: 139 SSLTCKSNWLHGWDWSEEKKHCPAHEPCLPFSYHFPTPDDLCEKIWNNTFKASPERRNSG 198
Query: 1067 RCIQMWFDPAQGNPNEAVARYYA 1135
RC+Q WF+P NPN VA ++A
Sbjct: 199 RCLQKWFEPTLSNPNVEVALHFA 221
>ref|NP_789777.1| probable folate receptor delta isoform 2 [Mus musculus].
Length = 172
Score = 175 bits (443), Expect = 9e-44
Identities = 71/136 (52%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A +L+VCM++K HK +P PED+L+ +C PW N+CC+ +TS EAH + L+ F+ H
Sbjct: 19 AGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLEEPLLFNFSMMH 78
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE-RILNVPLCKEDCQIWWEDCR 886
CG + PAC++HFIQ C +ECSPNLGPWIQ V + E R+ VPLC+EDC+ WW C
Sbjct: 79 CGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQEDCEDWWRACH 138
Query: 887 TSYTCKSNWHKGWNWT 934
+S TCKSNW GW+W+
Sbjct: 139 SSLTCKSNWLHGWDWS 154
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,141,564
Number of extensions: 1127188
Number of successful extensions: 4354
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4348
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998995.1| folate receptor 1 [Sus scrofa]. 533 e-151
Alignment gi|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus s... 530 e-151
Alignment gi|NP_999476.1| folate receptor alpha [Sus scrofa]. 410 e-115
Alignment gi|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus s... 407 e-113
Alignment gi|NP_999018.1| folate receptor 2 [Sus scrofa]. 379 e-105
>ref|NP_998995.1| folate receptor 1 [Sus scrofa].
Length = 252
Score = 533 bits (1372), Expect = e-151
Identities = 237/249 (95%), Positives = 237/249 (95%)
Frame = +2
Query: 467 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 646
MAWRLTLF RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS
Sbjct: 1 MAWRLTLFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 60
Query: 647 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 826
VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE
Sbjct: 61 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 120
Query: 827 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 1006
RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA
Sbjct: 121 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 180
Query: 1007 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 1186
LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT
Sbjct: 181 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 240
Query: 1187 NLTEMVKHW 1213
NLTEMVKHW
Sbjct: 241 NLTEMVKHW 249
>ref|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
Length = 252
Score = 530 bits (1365), Expect = e-151
Identities = 236/249 (94%), Positives = 236/249 (94%)
Frame = +2
Query: 467 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 646
MAWRLTLF RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS
Sbjct: 1 MAWRLTLFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 60
Query: 647 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 826
VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE
Sbjct: 61 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 120
Query: 827 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 1006
RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA
Sbjct: 121 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 180
Query: 1007 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 1186
LCNEIWSHSFEVSSYSRGSGRCIQMWFDPA GNPNEAVARYYAENGDAGAVAQGIGPLLT
Sbjct: 181 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPALGNPNEAVARYYAENGDAGAVAQGIGPLLT 240
Query: 1187 NLTEMVKHW 1213
NLTEMVKHW
Sbjct: 241 NLTEMVKHW 249
>ref|NP_999476.1| folate receptor alpha [Sus scrofa].
Length = 249
Score = 410 bits (1054), Expect = e-115
Identities = 170/203 (83%), Positives = 189/203 (93%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A+ D+LN+CMDAKHHK KP PED LH+QCSPW N+CCSVNTS EAH DISYLY+FNW+H
Sbjct: 21 ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQEAHNDISYLYKFNWEH 80
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CGKM+PACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQ WWEDCRT
Sbjct: 81 CGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQNWWEDCRT 140
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWH+GWNW+SGYN+CP +AACH FDFYFPTPAALC++IWS+S++ S+YSRGSGR
Sbjct: 141 SYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQIWSNSYKQSNYSRGSGR 200
Query: 1070 CIQMWFDPAQGNPNEAVARYYAE 1138
CIQMWFDP QGNPNE VARYYA+
Sbjct: 201 CIQMWFDPEQGNPNEVVARYYAQ 223
>ref|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
Length = 249
Score = 407 bits (1045), Expect = e-113
Identities = 169/203 (83%), Positives = 187/203 (92%)
Frame = +2
Query: 530 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 709
A+ D+LN+CMDAKHHK KP PED LH+QCSPW N+CCSVNTS EAH DISYLY+FNW+H
Sbjct: 21 ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQEAHNDISYLYKFNWEH 80
Query: 710 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 889
CGKM+PACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQ WWEDCRT
Sbjct: 81 CGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQNWWEDCRT 140
Query: 890 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 1069
SYTCKSNWH+GWNW+SGYN+CP +AACH FDFYFPTPAALC++IWS+S++ S YSRGSGR
Sbjct: 141 SYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQIWSNSYKQSHYSRGSGR 200
Query: 1070 CIQMWFDPAQGNPNEAVARYYAE 1138
CIQMWFDP QGNPNE ARYYA+
Sbjct: 201 CIQMWFDPEQGNPNEVWARYYAQ 223
>ref|NP_999018.1| folate receptor 2 [Sus scrofa].
Length = 253
Score = 379 bits (973), Expect = e-105
Identities = 162/247 (65%), Positives = 191/247 (77%), Gaps = 1/247 (0%)
Frame = +2
Query: 467 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 643
M W+LT L RA++D+LNVCMDAKHHK +P PED+LHDQC PW+KN+CC
Sbjct: 1 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 60
Query: 644 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 823
S S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+
Sbjct: 61 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 120
Query: 824 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 1003
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG NQCP C F+ +FPTPA
Sbjct: 121 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 180
Query: 1004 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLL 1183
ALC IW+H ++ ++YSRGSGRCIQMWFD A+GNPNE VAR+YA AG ++ G GPLL
Sbjct: 181 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLGTGPLL 240
Query: 1184 TNLTEMV 1204
+ M+
Sbjct: 241 LSAALML 247
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,202,360
Number of extensions: 1225601
Number of successful extensions: 3592
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3588
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007258
(1384 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 882 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 882 bits (445), Expect = 0.0
Identities = 445/445 (100%)
Strand = Plus / Plus
Query: 169 ctctgtggttcctcttatgcaggagcctctgcctgtgggtgaagcactggctggcgaact 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508407 ctctgtggttcctcttatgcaggagcctctgcctgtgggtgaagcactggctggcgaact 7508466
Query: 229 ccggaaggggaggtccggagaggtggtgcctccccccgcagcaaagctcagactgcactg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508467 ccggaaggggaggtccggagaggtggtgcctccccccgcagcaaagctcagactgcactg 7508526
Query: 289 tcctcaggtggcagtggtgtcctaccacttggcacagacctccacgggcccttcatcgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508527 tcctcaggtggcagtggtgtcctaccacttggcacagacctccacgggcccttcatcgct 7508586
Query: 349 tggctccactgtgctgtggggtaagcggcgcggggagggacgacgatctgggcttggaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508587 tggctccactgtgctgtggggtaagcggcgcggggagggacgacgatctgggcttggaag 7508646
Query: 409 ggaaacaggaaatctggccaagaagcttacggcagctttctggcagaagtggatcaacat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508647 ggaaacaggaaatctggccaagaagcttacggcagctttctggcagaagtggatcaacat 7508706
Query: 469 ggcctggcggctgacgctcttcgtgctcctgggtttggtggctgctgtggggggcgcccg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508707 ggcctggcggctgacgctcttcgtgctcctgggtttggtggctgctgtggggggcgcccg 7508766
Query: 529 ggccaagtcggacatgctcaatgtctgcatggatgccaagcaccacaagccaaagccaag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508767 ggccaagtcggacatgctcaatgtctgcatggatgccaagcaccacaagccaaagccaag 7508826
Query: 589 cccggaggacaagctgcacgaccag 613
|||||||||||||||||||||||||
Sbjct: 7508827 cccggaggacaagctgcacgaccag 7508851
Score = 739 bits (373), Expect = 0.0
Identities = 409/421 (97%), Gaps = 2/421 (0%)
Strand = Plus / Plus
Query: 936 cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511485 cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 7511544
Query: 996 cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511545 cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 7511604
Query: 1056 ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511605 ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 7511664
Query: 1116 cggtggcgagatactatgcagagaatggggatgctggggccgtggcccaggggatcgggc 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511665 cggtggcgagatactatgcagagaatggggatgctggggccgtggcccaggggatcgggc 7511724
Query: 1176 ctctcctgaccaacttgacggagatggtgaaacactgggtcaccggctaagctgttnnnn 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511725 ctctcctgaccaacttgacggagatggtgaaacactgggtcaccggctaagctgttcccc 7511784
Query: 1236 nnnngacccctgctttccgcccacaccccctgggttactctccgggtggcctcagcaccc 1295
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511785 cgccgacctctgctttccgcccacaccccctgggttactctccgggtggcctcagcaccc 7511844
Query: 1296 cggtcattggctcctgaatct-agatccgatggggagcctctgatggcctcttcccatac 1354
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 7511845 cggtcattggctcctg-atctaagatccgatggggagcctctgatggcctcttccaatac 7511903
Query: 1355 a 1355
|
Sbjct: 7511904 a 7511904
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 610 ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510831 ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 7510890
Query: 670 taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510891 taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 7510950
Query: 730 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510951 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 7511010
Query: 790 ctggatccaggaggt 804
|||||||||||||||
Sbjct: 7511011 ctggatccaggaggt 7511025
Score = 307 bits (155), Expect = 9e-81
Identities = 185/195 (94%)
Strand = Plus / Plus
Query: 610 ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 669
|||||||||||||||| || |||| |||||||||| ||||||||||||| |||||||||
Sbjct: 7520034 ccagtgcagcccctgggagatgaacgcctgctgctcggtcaacaccagccaagaagccca 7520093
Query: 670 taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 729
||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct: 7520094 taacgacatctcctacctgtacaaattcaactgggagcactgcggcaagatgaagccggc 7520153
Query: 730 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7520154 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 7520213
Query: 790 ctggatccaggaggt 804
|||||||||||||||
Sbjct: 7520214 ctggatccaggaggt 7520228
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 801 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511218 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7511277
Query: 861 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511278 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 7511337
Query: 921 gctggaactggacctcagg 939
|||||||||||||||||||
Sbjct: 7511338 gctggaactggacctcagg 7511356
Score = 252 bits (127), Expect = 4e-64
Identities = 136/139 (97%)
Strand = Plus / Plus
Query: 801 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7521228 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7521287
Query: 861 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 920
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7521288 gtcagaactggtgggaagactgccgcacctcctacacctgcaagagcaactggcacgagg 7521347
Query: 921 gctggaactggacctcagg 939
|||||||||||| ||||||
Sbjct: 7521348 gctggaactggagctcagg 7521366
Score = 238 bits (120), Expect = 7e-60
Identities = 177/196 (90%)
Strand = Plus / Plus
Query: 936 cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 995
|||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||
Sbjct: 7521507 cagggtataaccggtgccccgcgaacgccgcctgccaccccttcgacttctacttcccca 7521566
Query: 996 cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 1055
|||| ||||||||||||| | ||||||||||| |||||| || |||| ||||||||
Sbjct: 7521567 cgcctgctgccctgtgcagccagatctggagcaactcctacaaacaaagcaactacagcc 7521626
Query: 1056 ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 1115
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7521627 ggggcagcggccgctgcatccagatgtggttcgacccggaacagggcaaccccaacgagg 7521686
Query: 1116 cggtggcgagatacta 1131
|||||||||||||||
Sbjct: 7521687 tggtggcgagatacta 7521702
Score = 220 bits (111), Expect = 2e-54
Identities = 132/139 (94%)
Strand = Plus / Plus
Query: 801 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 860
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 7550990 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 7551049
Query: 861 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 920
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7551050 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 7551109
Query: 921 gctggaactggacctcagg 939
|||||||||||| ||||||
Sbjct: 7551110 gctggaactggagctcagg 7551128
Score = 137 bits (69), Expect = 2e-29
Identities = 96/105 (91%)
Strand = Plus / Plus
Query: 700 ctgggaccactgcggcaagatggagccggcctgcaagcgccacttcattcaagacacctg 759
|||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 7550776 ctgggagcactgcggcaggatggagccggcctgcaagcgccatttcattcagaacaactg 7550835
Query: 760 tctctatgagtgctcgcccaacctggggccctggatccaggaggt 804
||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 7550836 tctgtacgagtgctcgcccaacctggggccctggttccaggaggt 7550880
Score = 115 bits (58), Expect = 7e-23
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1048 ctacagccggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccc 1107
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 7551391 ctacagccggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccc 7551450
Query: 1108 caacgaggcggtggcgag 1125
|||||||| ||| |||||
Sbjct: 7551451 caacgaggaggtagcgag 7551468
Score = 103 bits (52), Expect = 3e-19
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 522 gcgcccgggccaagtcggacatgctcaatgtctgcatggatgccaagcaccacaagccaa 581
|||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 7548455 gcgcccgggccaggacggacctgctcaacgtctgcatggatgccaagcaccacaaggtag 7548514
Query: 582 agccaagcccggaggacaagctgcacgaccag 613
||||| |||| |||||| ||||||||||||||
Sbjct: 7548515 agccaggccctgaggacgagctgcacgaccag 7548546
Score = 65.9 bits (33), Expect = 6e-08
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 823 agagcggatcctgaacgtgcccctctgcaaagaggactgtcagatctggtgggaagactg 882
||||||||| ||| ||| |||||||||| | ||||||||| || ||||||| |||||
Sbjct: 30276659 agagcggattctggacgcgcccctctgccaggaggactgtgaggagtggtgggctgactg 30276718
Query: 883 ccgcacctcctacacctgcaa 903
|||||| ||||||||||||||
Sbjct: 30276719 ccgcacatcctacacctgcaa 30276739
Score = 65.9 bits (33), Expect = 6e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 1010 tgcaacgagatctggagccactcctttgaagtcagcagctacagccggggcagcggccgc 1069
||||| || |||||||| ||||||| ||||||||| | ||||| |||||| |||||
Sbjct: 139960585 tgcaatgatatctggagtcactcctacaaagtcagcaacctcagccagggcagtagccgc 139960644
Query: 1070 tgcatccagatgtggttcgacccggcccagggcaaccccaa 1110
||||||||||||||||| ||| | |||||||||||||||
Sbjct: 139960645 tgcatccagatgtggtttgacttgatccagggcaaccccaa 139960685
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 543 tgctcaatgtctgcatggatgccaagcaccacaagccaaagccaagcccggaggacaa 600
||||||| |||||||| | ||||||| |||||||||| |||| ||||||||||||||
Sbjct: 30213249 tgctcaacatctgcatgaacgccaagccccacaagccagagcccagcccggaggacaa 30213306
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,959,857
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 16
Length of query: 1384
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1363
Effective length of database: 2,808,413,156
Effective search space: 3827867131628
Effective search space used: 3827867131628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)