Animal-Genome cDNA 20110601C-007260


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus].      444   e-125
Alignment   gi|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus].      444   e-125
Alignment   gi|NP_001193461.1| folate receptor alpha [Bos taurus].               412   e-115
Alignment   gi|NP_001068793.1| folate receptor beta [Bos taurus].                390   e-109
Alignment   gi|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, p...   133   3e-31

>ref|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus].
          Length = 241

 Score =  444 bits (1142), Expect = e-125
 Identities = 191/241 (79%), Positives = 210/241 (87%), Gaps = 6/241 (2%)
 Frame = +3

Query: 264 MAWRLT------LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWR 425
           MAW++T      L             RA++D+LNVCMDAKHHK +P PED LH+QCSPWR
Sbjct: 1   MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60

Query: 426 KNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVN 605
           KN+CCSVNTS+EAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVN
Sbjct: 61  KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120

Query: 606 QKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFY 785
           Q+WR+ER+L VPLCKEDCQ WWEDCRTSYTCKSNWHKGWNWTSGYNQCPV AACHRFDFY
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180

Query: 786 FPTPAALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQG 965
           FPTPAALCNEIWSHS++VS+YSRGSGRCIQMWFDP QGNPNE VAR+YAEN  +G+  QG
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240

Query: 966 I 968
           I
Sbjct: 241 I 241


>ref|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus].
          Length = 241

 Score =  444 bits (1142), Expect = e-125
 Identities = 191/241 (79%), Positives = 210/241 (87%), Gaps = 6/241 (2%)
 Frame = +3

Query: 264 MAWRLT------LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWR 425
           MAW++T      L             RA++D+LNVCMDAKHHK +P PED LH+QCSPWR
Sbjct: 1   MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60

Query: 426 KNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVN 605
           KN+CCSVNTS+EAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVN
Sbjct: 61  KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120

Query: 606 QKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFY 785
           Q+WR+ER+L VPLCKEDCQ WWEDCRTSYTCKSNWHKGWNWTSGYNQCPV AACHRFDFY
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180

Query: 786 FPTPAALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQG 965
           FPTPAALCNEIWSHS++VS+YSRGSGRCIQMWFDP QGNPNE VAR+YAEN  +G+  QG
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240

Query: 966 I 968
           I
Sbjct: 241 I 241


>ref|NP_001193461.1| folate receptor alpha [Bos taurus].
          Length = 251

 Score =  412 bits (1059), Expect = e-115
 Identities = 176/226 (77%), Positives = 196/226 (86%), Gaps = 1/226 (0%)
 Frame = +3

Query: 264 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 440
           MAW++T L             R  + +LNVCM+A++HK KP PEDKLH QCSPW+KN+CC
Sbjct: 1   MAWKITPLLCLLVCVAAVGAARPGTQLLNVCMNARYHKEKPGPEDKLHGQCSPWKKNACC 60

Query: 441 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 620
            VNTS+EAHKDIS LYRF+WDHCGKMEPACKRHFIQDTCLYECSPNLGPWI+EVNQ WR+
Sbjct: 61  FVNTSIEAHKDISSLYRFDWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVNQSWRK 120

Query: 621 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 800
           ERILNVPLCKEDCQ WWEDCRTSYTCKSNWH+GW+WTSGYNQCPV AACHRFDFYFPTPA
Sbjct: 121 ERILNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGYNQCPVKAACHRFDFYFPTPA 180

Query: 801 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAEN 938
           ALCNEIWSHS++ S+YSRGSGRCIQMWFDP   NPNE VAR+YAE+
Sbjct: 181 ALCNEIWSHSYKASNYSRGSGRCIQMWFDPILDNPNEEVARFYAES 226


>ref|NP_001068793.1| folate receptor beta [Bos taurus].
          Length = 253

 Score =  390 bits (1003), Expect = e-109
 Identities = 169/240 (70%), Positives = 190/240 (79%), Gaps = 1/240 (0%)
 Frame = +3

Query: 264 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 440
           M W+LT L             R ++D+LNVCMDAKHHK +P PEDKLH+QC+PW+KN+CC
Sbjct: 1   MPWKLTPLLLFLGWMTSVCSARTRTDLLNVCMDAKHHKAEPGPEDKLHNQCTPWKKNACC 60

Query: 441 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 620
           S   S E HKD S LY F WDHCGKMEPAC+RHFIQD CLYECSPNLGPWIQEVNQKWR+
Sbjct: 61  SARVSQELHKDTSSLYNFTWDHCGKMEPACQRHFIQDNCLYECSPNLGPWIQEVNQKWRK 120

Query: 621 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 800
           ER LNVPLCKEDCQ WWEDCRTSYTCKSNWH+GW+WTSG N+CP    C  F+ YFPTPA
Sbjct: 121 ERFLNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGSNKCPTGTICRTFEAYFPTPA 180

Query: 801 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLL 980
           ALC  +WSHS+++S+YSRGSGRCIQMWFDPA GNPNE VAR+YA    A A  QGI PLL
Sbjct: 181 ALCEGLWSHSYKLSNYSRGSGRCIQMWFDPALGNPNEEVARFYALALTAEAWPQGIRPLL 240


>ref|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, partial [Bos taurus].
          Length = 109

 Score =  133 bits (334), Expect = 3e-31
 Identities = 52/88 (59%), Positives = 70/88 (79%)
 Frame = +3

Query: 336 DMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHCGK 515
           ++LNVCM+AK HKP+P PE +L+++C PW+ N+CC+ +TS EAH D+S LY F+  HCG 
Sbjct: 22  ELLNVCMNAKPHKPEPGPEAELYEECIPWKDNACCTASTSWEAHLDVSLLYNFSLVHCGL 81

Query: 516 MEPACKRHFIQDTCLYECSPNLGPWIQE 599
           M P C+RHF+Q  C Y+CSPNLGPWIQ+
Sbjct: 82  MMPDCQRHFLQAICFYQCSPNLGPWIQQ 109


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,170,158
Number of extensions: 1287789
Number of successful extensions: 5617
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5601
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult)...   405   e-113
Alignment   gi|XP_534020.2| PREDICTED: similar to Folate receptor beta prec...   389   e-108
Alignment   gi|XP_852006.1| PREDICTED: similar to Folate receptor beta prec...   285   8e-77
Alignment   gi|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta)...   199   4e-51

>ref|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult) [Canis familiaris].
          Length = 252

 Score =  405 bits (1041), Expect = e-113
 Identities = 170/203 (83%), Positives = 186/203 (91%)
 Frame = +3

Query: 324 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 503
           R ++++LNVCMDAKHHK KPSPED LH QCSPW+KNSCC  NTS EAHKDISYLYRFNW+
Sbjct: 23  RPRTELLNVCMDAKHHKEKPSPEDGLHKQCSPWKKNSCCFANTSREAHKDISYLYRFNWN 82

Query: 504 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 683
           HCG M PACK+HFIQDTCLYECSPNLGPWIQEVNQ WR+ERIL+VPLCKEDC+ WW+DCR
Sbjct: 83  HCGSMTPACKKHFIQDTCLYECSPNLGPWIQEVNQSWRKERILHVPLCKEDCEQWWQDCR 142

Query: 684 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 863
           TSYTCKSNWHKGWNWTSGYNQCP  AACH F FYFPT AALC+EIWSHS++VS+YSRGSG
Sbjct: 143 TSYTCKSNWHKGWNWTSGYNQCPEGAACHPFHFYFPTSAALCSEIWSHSYKVSNYSRGSG 202

Query: 864 RCIQMWFDPAQGNPNEAVARYYA 932
           RCIQMWFDPAQGNPNE VAR+YA
Sbjct: 203 RCIQMWFDPAQGNPNEEVARFYA 225


>ref|XP_534020.2| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
           (Folate receptor 2) (Folate receptor, fetal/placental)
           (Placental folate-binding protein) (FBP) [Canis
           familiaris].
          Length = 263

 Score =  389 bits (998), Expect = e-108
 Identities = 167/241 (69%), Positives = 189/241 (78%), Gaps = 1/241 (0%)
 Frame = +3

Query: 261 NMAWRL-TLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSC 437
           +MAWRL  L             R ++D+LNVCMDAKHHK KP PEDKLH QC+PWRK +C
Sbjct: 8   DMAWRLIALVLLLAWTAPTCRARVRTDLLNVCMDAKHHKAKPGPEDKLHAQCTPWRKKAC 67

Query: 438 CSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWR 617
           C+V+TS E HKD S LY F WDHC KMEPACKRHFIQD CLYECSPNLGPWIQEVNQ WR
Sbjct: 68  CTVSTSQELHKDTSRLYNFTWDHCSKMEPACKRHFIQDNCLYECSPNLGPWIQEVNQSWR 127

Query: 618 RERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTP 797
           +ERIL VPLC+EDC+ WW+DCRTSYTCKSNWH+GWNWTSG N+CP    C  F+ YFPTP
Sbjct: 128 KERILQVPLCREDCEQWWQDCRTSYTCKSNWHRGWNWTSGVNKCPARTTCRTFEAYFPTP 187

Query: 798 AALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPL 977
           AALC  IW HS++ ++Y RGSGRCIQMWFDPAQGNPNE VAR+YA   +AG + QGI  L
Sbjct: 188 AALCEGIWDHSYKATNYRRGSGRCIQMWFDPAQGNPNEEVARFYAGARNAGVMPQGIEHL 247

Query: 978 L 980
           L
Sbjct: 248 L 248


>ref|XP_852006.1| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
           (Folate receptor 2) (Folate receptor, fetal/placental)
           (Placental folate-binding protein) (FBP) [Canis
           familiaris].
          Length = 223

 Score =  285 bits (728), Expect = 8e-77
 Identities = 113/157 (71%), Positives = 132/157 (84%)
 Frame = +3

Query: 393 DKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECS 572
           + L  +C+PWRK +CC+V+TS E HKD S LY F WDHCGKMEPACKRHFIQD CLYECS
Sbjct: 49  EPLRSRCTPWRKKACCTVSTSQELHKDTSRLYNFTWDHCGKMEPACKRHFIQDNCLYECS 108

Query: 573 PNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCP 752
           PNLGPWIQEVNQ WR+ERIL+VPLC+EDC+ WW+DCRTSYTCKSNWH+GWNWTSG N+CP
Sbjct: 109 PNLGPWIQEVNQSWRKERILHVPLCREDCEQWWQDCRTSYTCKSNWHRGWNWTSGVNKCP 168

Query: 753 VSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 863
               C  ++ YFPTPAALC  IW HS++ ++YSRGSG
Sbjct: 169 ARTTCRTYEAYFPTPAALCEGIWDHSYKATNYSRGSG 205


>ref|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta) isoform 1 [Canis
           familiaris].
          Length = 219

 Score =  199 bits (506), Expect = 4e-51
 Identities = 79/137 (57%), Positives = 101/137 (73%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A  ++LNVCM  KHHK +P PEDKL+++C PW + +CC+ +TS  AH D+S LY F+  H
Sbjct: 19  AGDELLNVCMKTKHHKREPGPEDKLYEECIPWAEKACCTASTSWHAHLDVSLLYNFSLLH 78

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CG M P C+ HFIQ  C YECSPNLGPWIQ+V    + ERI + PLC+EDC+ WWEDCRT
Sbjct: 79  CGLMMPGCEEHFIQAVCFYECSPNLGPWIQKVGSSGQGERIRDAPLCREDCEQWWEDCRT 138

Query: 687 SYTCKSNWHKGWNWTSG 737
           SYTC+S+W   W+W+ G
Sbjct: 139 SYTCRSDWLGSWDWSRG 155


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,985,710
Number of extensions: 1320796
Number of successful extensions: 5763
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5748
Number of HSP's successfully gapped: 4
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057936.1| folate receptor alpha precursor [Homo sapiens].      402   e-112
Alignment   gi|NP_057937.1| folate receptor alpha precursor [Homo sapiens].      402   e-112
Alignment   gi|NP_000793.1| folate receptor alpha precursor [Homo sapiens].      402   e-112
Alignment   gi|NP_057941.1| folate receptor alpha precursor [Homo sapiens].      402   e-112
Alignment   gi|NP_000795.2| folate receptor gamma precursor [Homo sapiens].      390   e-109
Alignment   gi|NP_001107008.1| folate receptor beta precursor [Homo sapiens].    388   e-108
Alignment   gi|NP_001107007.1| folate receptor beta precursor [Homo sapiens].    388   e-108
Alignment   gi|NP_001107006.1| folate receptor beta precursor [Homo sapiens].    388   e-108
Alignment   gi|NP_000794.3| folate receptor beta precursor [Homo sapiens].       388   e-108
Alignment   gi|NP_001186135.1| probable folate receptor delta [Homo sapiens].    293   3e-79

>ref|NP_057936.1| folate receptor alpha precursor [Homo sapiens].
          Length = 257

 Score =  402 bits (1033), Expect = e-112
 Identities = 168/216 (77%), Positives = 190/216 (87%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29  ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89  CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWHKGWNWTSG+N+C V AAC  F FYFPTP  LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208

Query: 867 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 974
           CIQMWFDPAQGNPNE VAR+YA      A   G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238


>ref|NP_057937.1| folate receptor alpha precursor [Homo sapiens].
          Length = 257

 Score =  402 bits (1033), Expect = e-112
 Identities = 168/216 (77%), Positives = 190/216 (87%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29  ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89  CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWHKGWNWTSG+N+C V AAC  F FYFPTP  LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208

Query: 867 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 974
           CIQMWFDPAQGNPNE VAR+YA      A   G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238


>ref|NP_000793.1| folate receptor alpha precursor [Homo sapiens].
          Length = 257

 Score =  402 bits (1033), Expect = e-112
 Identities = 168/216 (77%), Positives = 190/216 (87%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29  ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89  CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWHKGWNWTSG+N+C V AAC  F FYFPTP  LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208

Query: 867 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 974
           CIQMWFDPAQGNPNE VAR+YA      A   G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238


>ref|NP_057941.1| folate receptor alpha precursor [Homo sapiens].
          Length = 257

 Score =  402 bits (1033), Expect = e-112
 Identities = 168/216 (77%), Positives = 190/216 (87%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A++++LNVCM+AKHHK KP PEDKLH+QC PWRKN+CCS NTS EAHKD+SYLYRFNW+H
Sbjct: 29  ARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSTNTSQEAHKDVSYLYRFNWNH 88

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CG+M PACKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ER+LNVPLCKEDC+ WWEDCRT
Sbjct: 89  CGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRT 148

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWHKGWNWTSG+N+C V AAC  F FYFPTP  LCNEIW+HS++VS+YSRGSGR
Sbjct: 149 SYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGR 208

Query: 867 CIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGP 974
           CIQMWFDPAQGNPNE VAR+YA      A   G GP
Sbjct: 209 CIQMWFDPAQGNPNEEVARFYA------AAMSGAGP 238


>ref|NP_000795.2| folate receptor gamma precursor [Homo sapiens].
          Length = 245

 Score =  390 bits (1003), Expect = e-109
 Identities = 163/215 (75%), Positives = 189/215 (87%)
 Frame = +3

Query: 324 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 503
           RA++D+LNVCM+AKHHK +PSPED+L+ QCSPW+KN+CC+ +TS E HKD S LY FNWD
Sbjct: 28  RARTDLLNVCMNAKHHKTQPSPEDELYGQCSPWKKNACCTASTSQELHKDTSRLYNFNWD 87

Query: 504 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 683
           HCGKMEP CKRHFIQD+CLYECSPNLGPWI++VNQ WR+ERILNVPLCKEDC+ WWEDCR
Sbjct: 88  HCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQVNQSWRKERILNVPLCKEDCERWWEDCR 147

Query: 684 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 863
           TSYTCKSNWHKGWNWTSG N+CP  A C  F+ YFPTPAALC  +WSHSF+VS+YSRGSG
Sbjct: 148 TSYTCKSNWHKGWNWTSGINECPAGALCSTFESYFPTPAALCEGLWSHSFKVSNYSRGSG 207

Query: 864 RCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGI 968
           RCIQMWFD AQGNPNE VA++YA   +AGA ++GI
Sbjct: 208 RCIQMWFDSAQGNPNEEVAKFYAAAMNAGAPSRGI 242


>ref|NP_001107008.1| folate receptor beta precursor [Homo sapiens].
          Length = 255

 Score =  388 bits (996), Expect = e-108
 Identities = 164/219 (74%), Positives = 187/219 (85%), Gaps = 2/219 (0%)
 Frame = +3

Query: 330 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 509
           ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24  RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83

Query: 510 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 689
           GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84  GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143

Query: 690 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 869
           +TCKSNWH+GW+WTSG N+CP  A C  F+ YFPTPAALC  +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203

Query: 870 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLL 980
           IQMWFD AQGNPNE VAR+YA   + +AG +  G G LL
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLL 242


>ref|NP_001107007.1| folate receptor beta precursor [Homo sapiens].
          Length = 255

 Score =  388 bits (996), Expect = e-108
 Identities = 164/219 (74%), Positives = 187/219 (85%), Gaps = 2/219 (0%)
 Frame = +3

Query: 330 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 509
           ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24  RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83

Query: 510 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 689
           GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84  GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143

Query: 690 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 869
           +TCKSNWH+GW+WTSG N+CP  A C  F+ YFPTPAALC  +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203

Query: 870 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLL 980
           IQMWFD AQGNPNE VAR+YA   + +AG +  G G LL
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLL 242


>ref|NP_001107006.1| folate receptor beta precursor [Homo sapiens].
          Length = 255

 Score =  388 bits (996), Expect = e-108
 Identities = 164/219 (74%), Positives = 187/219 (85%), Gaps = 2/219 (0%)
 Frame = +3

Query: 330 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 509
           ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24  RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83

Query: 510 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 689
           GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84  GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143

Query: 690 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 869
           +TCKSNWH+GW+WTSG N+CP  A C  F+ YFPTPAALC  +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203

Query: 870 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLL 980
           IQMWFD AQGNPNE VAR+YA   + +AG +  G G LL
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLL 242


>ref|NP_000794.3| folate receptor beta precursor [Homo sapiens].
          Length = 255

 Score =  388 bits (996), Expect = e-108
 Identities = 164/219 (74%), Positives = 187/219 (85%), Gaps = 2/219 (0%)
 Frame = +3

Query: 330 KSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDHC 509
           ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CC+ +TS E HKD S LY FNWDHC
Sbjct: 24  RTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCTASTSQELHKDTSRLYNFNWDHC 83

Query: 510 GKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRTS 689
           GKMEPACKRHFIQDTCLYECSPNLGPWIQ+VNQ WR+ER L+VPLCKEDCQ WWEDC TS
Sbjct: 84  GKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRKERFLDVPLCKEDCQRWWEDCHTS 143

Query: 690 YTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGRC 869
           +TCKSNWH+GW+WTSG N+CP  A C  F+ YFPTPAALC  +WSHS++VS+YSRGSGRC
Sbjct: 144 HTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPAALCEGLWSHSYKVSNYSRGSGRC 203

Query: 870 IQMWFDPAQGNPNEAVARYYAE--NGDAGAVAQGIGPLL 980
           IQMWFD AQGNPNE VAR+YA   + +AG +  G G LL
Sbjct: 204 IQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGTGGLL 242


>ref|NP_001186135.1| probable folate receptor delta [Homo sapiens].
          Length = 250

 Score =  293 bits (749), Expect = 3e-79
 Identities = 124/211 (58%), Positives = 155/211 (73%), Gaps = 7/211 (3%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A  ++LN+CM+AKHHK  PSPEDKL+++C PW+ N+CC++ TS EAH D+S LY F+  H
Sbjct: 19  AGDELLNICMNAKHHKRVPSPEDKLYEECIPWKDNACCTLTTSWEAHLDVSPLYNFSLFH 78

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQ-------EVNQKWRRERILNVPLCKEDCQI 665
           CG + P C++HFIQ  C YECSPNLGPWIQ       EV    + ER++NVPLC+EDC+ 
Sbjct: 79  CGLLMPGCRKHFIQAICFYECSPNLGPWIQPVGSLGWEVAPSGQGERVVNVPLCQEDCEE 138

Query: 666 WWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSS 845
           WWEDCR SYTCKSNW  GW+W+ G N+CP  A C  F  YFPTPA LC + WS+SF+ S 
Sbjct: 139 WWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGAQCLPFSHYFPTPADLCEKTWSNSFKASP 198

Query: 846 YSRGSGRCIQMWFDPAQGNPNEAVARYYAEN 938
             R SGRC+Q WF+PAQGNPN AVAR +A +
Sbjct: 199 ERRNSGRCLQKWFEPAQGNPNVAVARLFASS 229


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,086,088
Number of extensions: 1296536
Number of successful extensions: 5383
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5355
Number of HSP's successfully gapped: 10
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032060.2| folate receptor alpha precursor [Mus musculus].      400   e-111
Alignment   gi|NP_032061.1| folate receptor beta precursor [Mus musculus].       372   e-103
Alignment   gi|NP_075026.1| probable folate receptor delta isoform 1 [Mus m...   242   5e-64
Alignment   gi|NP_789777.1| probable folate receptor delta isoform 2 [Mus m...   175   7e-44

>ref|NP_032060.2| folate receptor alpha precursor [Mus musculus].
          Length = 255

 Score =  400 bits (1027), Expect = e-111
 Identities = 170/219 (77%), Positives = 193/219 (88%)
 Frame = +3

Query: 324 RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWD 503
           RA++++LNVCMDAKHHK KP PED LHDQCSPW+ NSCCS NTS EAHKDISYLYRFNW+
Sbjct: 26  RARTELLNVCMDAKHHKEKPGPEDNLHDQCSPWKTNSCCSTNTSQEAHKDISYLYRFNWN 85

Query: 504 HCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCR 683
           HCG M   CKRHFIQDTCLYECSPNLGPWIQ+V+Q WR+ERIL+VPLCKEDCQ WWEDC+
Sbjct: 86  HCGTMTSECKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERILDVPLCKEDCQQWWEDCQ 145

Query: 684 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 863
           +S+TCKSNWHKGWNW+SG+N+CPV A+CH F FYFPT AALC EIWSHS+++S+YSRGSG
Sbjct: 146 SSFTCKSNWHKGWNWSSGHNECPVGASCHPFTFYFPTSAALCEEIWSHSYKLSNYSRGSG 205

Query: 864 RCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLL 980
           RCIQMWFDPAQGNPNE VAR+YAE   +GA   G  PLL
Sbjct: 206 RCIQMWFDPAQGNPNEEVARFYAE-AMSGAGFHGTWPLL 243


>ref|NP_032061.1| folate receptor beta precursor [Mus musculus].
          Length = 251

 Score =  372 bits (955), Expect = e-103
 Identities = 158/231 (68%), Positives = 185/231 (80%)
 Frame = +3

Query: 264 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 443
           MAW+ T              R ++D+LNVCMDAKHHK KP PEDKLHDQCSPW+KN+CCS
Sbjct: 1   MAWKQTPLLLLVYMVTTGSGRDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACCS 60

Query: 444 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 623
           VNTS E HK  S LY FNWDHCGKMEPACK HFIQD+CLYECSPNLGPWIQ+V+Q WR+E
Sbjct: 61  VNTSQELHKADSRLY-FNWDHCGKMEPACKSHFIQDSCLYECSPNLGPWIQQVDQSWRKE 119

Query: 624 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 803
           R L+VPLCKEDC  WWE CRTS+TCK +WHKGW+W+SG N+CP +A CH F++YFPTPA+
Sbjct: 120 RFLDVPLCKEDCHQWWEACRTSFTCKRDWHKGWDWSSGINKCPNTAPCHTFEYYFPTPAS 179

Query: 804 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAV 956
           LC  +WSHS++VS+YSRGSGRCIQMWFD  QGNPNE V ++YA    +G V
Sbjct: 180 LCEGLWSHSYKVSNYSRGSGRCIQMWFDSTQGNPNEDVVKFYASFMTSGTV 230


>ref|NP_075026.1| probable folate receptor delta isoform 1 [Mus musculus].
          Length = 244

 Score =  242 bits (617), Expect = 5e-64
 Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 1/203 (0%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A   +L+VCM++K HK +P PED+L+ +C PW  N+CC+ +TS EAH +   L+ F+  H
Sbjct: 19  AGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLEEPLLFNFSMMH 78

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE-RILNVPLCKEDCQIWWEDCR 683
           CG + PAC++HFIQ  C +ECSPNLGPWIQ V    + E R+  VPLC+EDC+ WW  C 
Sbjct: 79  CGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQEDCEDWWRACH 138

Query: 684 TSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSG 863
           +S TCKSNW  GW+W+     CP    C  F ++FPTP  LC +IW+++F+ S   R SG
Sbjct: 139 SSLTCKSNWLHGWDWSEEKKHCPAHEPCLPFSYHFPTPDDLCEKIWNNTFKASPERRNSG 198

Query: 864 RCIQMWFDPAQGNPNEAVARYYA 932
           RC+Q WF+P   NPN  VA ++A
Sbjct: 199 RCLQKWFEPTLSNPNVEVALHFA 221


>ref|NP_789777.1| probable folate receptor delta isoform 2 [Mus musculus].
          Length = 172

 Score =  175 bits (443), Expect = 7e-44
 Identities = 71/136 (52%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A   +L+VCM++K HK +P PED+L+ +C PW  N+CC+ +TS EAH +   L+ F+  H
Sbjct: 19  AGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLEEPLLFNFSMMH 78

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE-RILNVPLCKEDCQIWWEDCR 683
           CG + PAC++HFIQ  C +ECSPNLGPWIQ V    + E R+  VPLC+EDC+ WW  C 
Sbjct: 79  CGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQEDCEDWWRACH 138

Query: 684 TSYTCKSNWHKGWNWT 731
           +S TCKSNW  GW+W+
Sbjct: 139 SSLTCKSNWLHGWDWS 154


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,884,179
Number of extensions: 1066741
Number of successful extensions: 4281
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4269
Number of HSP's successfully gapped: 4
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998995.1| folate receptor 1 [Sus scrofa].                      512   e-145
Alignment   gi|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus s...   509   e-145
Alignment   gi|NP_999476.1| folate receptor alpha [Sus scrofa].                  410   e-115
Alignment   gi|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus s...   407   e-114
Alignment   gi|NP_999018.1| folate receptor 2 [Sus scrofa].                      378   e-105

>ref|NP_998995.1| folate receptor 1 [Sus scrofa].
          Length = 252

 Score =  512 bits (1319), Expect(2) = e-145
 Identities = 228/240 (95%), Positives = 228/240 (95%)
 Frame = +3

Query: 264 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 443
           MAWRLTLF            RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS
Sbjct: 1   MAWRLTLFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 60

Query: 444 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 623
           VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE
Sbjct: 61  VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 120

Query: 624 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 803
           RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA
Sbjct: 121 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 180

Query: 804 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 983
           LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT
Sbjct: 181 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 240



 Score = 23.1 bits (48), Expect(2) = e-145
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 983  HLTEMVKHW 1009
            +LTEMVKHW
Sbjct: 241  NLTEMVKHW 249


>ref|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
          Length = 252

 Score =  509 bits (1312), Expect(2) = e-145
 Identities = 227/240 (94%), Positives = 227/240 (94%)
 Frame = +3

Query: 264 MAWRLTLFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 443
           MAWRLTLF            RAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS
Sbjct: 1   MAWRLTLFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCS 60

Query: 444 VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 623
           VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE
Sbjct: 61  VNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRE 120

Query: 624 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 803
           RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA
Sbjct: 121 RILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAA 180

Query: 804 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLLT 983
           LCNEIWSHSFEVSSYSRGSGRCIQMWFDPA GNPNEAVARYYAENGDAGAVAQGIGPLLT
Sbjct: 181 LCNEIWSHSFEVSSYSRGSGRCIQMWFDPALGNPNEAVARYYAENGDAGAVAQGIGPLLT 240



 Score = 23.1 bits (48), Expect(2) = e-145
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 983  HLTEMVKHW 1009
            +LTEMVKHW
Sbjct: 241  NLTEMVKHW 249


>ref|NP_999476.1| folate receptor alpha [Sus scrofa].
          Length = 249

 Score =  410 bits (1054), Expect = e-115
 Identities = 170/203 (83%), Positives = 189/203 (93%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A+ D+LN+CMDAKHHK KP PED LH+QCSPW  N+CCSVNTS EAH DISYLY+FNW+H
Sbjct: 21  ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQEAHNDISYLYKFNWEH 80

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CGKM+PACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQ WWEDCRT
Sbjct: 81  CGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQNWWEDCRT 140

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWH+GWNW+SGYN+CP +AACH FDFYFPTPAALC++IWS+S++ S+YSRGSGR
Sbjct: 141 SYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQIWSNSYKQSNYSRGSGR 200

Query: 867 CIQMWFDPAQGNPNEAVARYYAE 935
           CIQMWFDP QGNPNE VARYYA+
Sbjct: 201 CIQMWFDPEQGNPNEVVARYYAQ 223


>ref|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
          Length = 249

 Score =  407 bits (1045), Expect = e-114
 Identities = 169/203 (83%), Positives = 187/203 (92%)
 Frame = +3

Query: 327 AKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCCSVNTSLEAHKDISYLYRFNWDH 506
           A+ D+LN+CMDAKHHK KP PED LH+QCSPW  N+CCSVNTS EAH DISYLY+FNW+H
Sbjct: 21  ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQEAHNDISYLYKFNWEH 80

Query: 507 CGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQIWWEDCRT 686
           CGKM+PACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQ WWEDCRT
Sbjct: 81  CGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNVPLCKEDCQNWWEDCRT 140

Query: 687 SYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPAALCNEIWSHSFEVSSYSRGSGR 866
           SYTCKSNWH+GWNW+SGYN+CP +AACH FDFYFPTPAALC++IWS+S++ S YSRGSGR
Sbjct: 141 SYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQIWSNSYKQSHYSRGSGR 200

Query: 867 CIQMWFDPAQGNPNEAVARYYAE 935
           CIQMWFDP QGNPNE  ARYYA+
Sbjct: 201 CIQMWFDPEQGNPNEVWARYYAQ 223


>ref|NP_999018.1| folate receptor 2 [Sus scrofa].
          Length = 253

 Score =  378 bits (971), Expect = e-105
 Identities = 161/240 (67%), Positives = 188/240 (78%), Gaps = 1/240 (0%)
 Frame = +3

Query: 264 MAWRLT-LFXXXXXXXXXXXXRAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 440
           M W+LT L             RA++D+LNVCMDAKHHK +P PED+LHDQC PW+KN+CC
Sbjct: 1   MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 60

Query: 441 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 620
           S   S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+
Sbjct: 61  SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 120

Query: 621 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 800
           ER LNVPLCKEDC  WWEDCRTSYTCKS+WHKGWNW+SG NQCP    C  F+ +FPTPA
Sbjct: 121 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 180

Query: 801 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQGIGPLL 980
           ALC  IW+H ++ ++YSRGSGRCIQMWFD A+GNPNE VAR+YA    AG ++ G GPLL
Sbjct: 181 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLGTGPLL 240


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,541,832
Number of extensions: 833842
Number of successful extensions: 3595
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3570
Number of HSP's successfully gapped: 7
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007260
         (1162 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         694   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  694 bits (350), Expect = 0.0
 Identities = 413/433 (95%), Gaps = 3/433 (0%)
 Strand = Plus / Plus

                                                                           
Query: 733     cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 792
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511485 cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 7511544

                                                                           
Query: 793     cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 852
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511545 cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 7511604

                                                                           
Query: 853     ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 912
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511605 ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 7511664

                                                                           
Query: 913     cggtggcgagatactatgcagagaatggggatgctggggccgtggcccaggggatcgggc 972
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511665 cggtggcgagatactatgcagagaatggggatgctggggccgtggcccaggggatcgggc 7511724

                                                                           
Query: 973     ctctcctgacc-acttgacggagatggtgaaacactgggtcaccggctaagctgttnnnn 1031
               ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 7511725 ctctcctgaccaacttgacggagatggtgaaacactgggtcaccggctaagctgttcccc 7511784

                                                                           
Query: 1032    nnnngacccctgctttccg-ccaccacccctgggttactctccgggtgg-ctcagcaccc 1089
                   |||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||
Sbjct: 7511785 cgccgacctctgctttccgcccacaccccctgggttactctccgggtggcctcagcaccc 7511844

                                                                           
Query: 1090    cggtcattgcctcctgatctaagatccgatggggagcctctgaacggctcttccnatacc 1149
               ||||||||| |||||||||||||||||||||||||||||||||  | ||||||| |||| 
Sbjct: 7511845 cggtcattggctcctgatctaagatccgatggggagcctctgatggcctcttccaataca 7511904

                            
Query: 1150    atatccacgtgtg 1162
               |||||||||||||
Sbjct: 7511905 atatccacgtgtg 7511917



 Score =  387 bits (195), Expect = e-104
 Identities = 195/195 (100%)
 Strand = Plus / Plus

                                                                           
Query: 407     ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 466
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510831 ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 7510890

                                                                           
Query: 467     taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 526
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510891 taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 7510950

                                                                           
Query: 527     ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 586
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7510951 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 7511010

                              
Query: 587     ctggatccaggaggt 601
               |||||||||||||||
Sbjct: 7511011 ctggatccaggaggt 7511025



 Score =  357 bits (180), Expect = 9e-96
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                           
Query: 72      aggagcctctgcctgtgggtgaagcactggctggcgaactccggaaggggaggtccggag 131
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508427 aggagcctctgcctgtgggtgaagcactggctggcgaactccggaaggggaggtccggag 7508486

                                                                           
Query: 132     aggtggtgcctccccccgcagcaaagctcagactgcactgtcctcaggtggcagtggtgt 191
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508487 aggtggtgcctccccccgcagcaaagctcagactgcactgtcctcaggtggcagtggtgt 7508546

                                                                           
Query: 192     cctaccacttggcacagacctccacgggcccttcatcgcttggctccactgtgctgtggg 251
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508547 cctaccacttggcacagacctccacgggcccttcatcgcttggctccactgtgctgtggg 7508606



 Score =  317 bits (160), Expect = 8e-84
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                           
Query: 251     gaagtggatcaacatggcctggcggctgacgctcttcgtgctcctgggtttggtggctgc 310
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508692 gaagtggatcaacatggcctggcggctgacgctcttcgtgctcctgggtttggtggctgc 7508751

                                                                           
Query: 311     tgtggggggcgcccgggccaagtcggacatgctcaatgtctgcatggatgccaagcacca 370
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508752 tgtggggggcgcccgggccaagtcggacatgctcaatgtctgcatggatgccaagcacca 7508811

                                                       
Query: 371     caagccaaagccaagcccggaggacaagctgcacgaccag 410
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508812 caagccaaagccaagcccggaggacaagctgcacgaccag 7508851



 Score =  307 bits (155), Expect = 7e-81
 Identities = 185/195 (94%)
 Strand = Plus / Plus

                                                                           
Query: 407     ccagtgcagcccctggaggaagaactcctgctgctcagtcaacaccagcctagaagccca 466
               ||||||||||||||||  || |||| |||||||||| ||||||||||||| |||||||||
Sbjct: 7520034 ccagtgcagcccctgggagatgaacgcctgctgctcggtcaacaccagccaagaagccca 7520093

                                                                           
Query: 467     taaagacatctcctacctgtacagattcaactgggaccactgcggcaagatggagccggc 526
               ||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct: 7520094 taacgacatctcctacctgtacaaattcaactgggagcactgcggcaagatgaagccggc 7520153

                                                                           
Query: 527     ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 586
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7520154 ctgcaagcgccacttcattcaagacacctgtctctatgagtgctcgcccaacctggggcc 7520213

                              
Query: 587     ctggatccaggaggt 601
               |||||||||||||||
Sbjct: 7520214 ctggatccaggaggt 7520228



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                           
Query: 598     aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 657
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511218 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7511277

                                                                           
Query: 658     gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 717
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511278 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 7511337

                                  
Query: 718     gctggaactggacctcagg 736
               |||||||||||||||||||
Sbjct: 7511338 gctggaactggacctcagg 7511356



 Score =  252 bits (127), Expect = 4e-64
 Identities = 136/139 (97%)
 Strand = Plus / Plus

                                                                           
Query: 598     aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 657
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7521228 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7521287

                                                                           
Query: 658     gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 717
               |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7521288 gtcagaactggtgggaagactgccgcacctcctacacctgcaagagcaactggcacgagg 7521347

                                  
Query: 718     gctggaactggacctcagg 736
               |||||||||||| ||||||
Sbjct: 7521348 gctggaactggagctcagg 7521366



 Score =  238 bits (120), Expect = 6e-60
 Identities = 177/196 (90%)
 Strand = Plus / Plus

                                                                           
Query: 733     cagggtataaccagtgcccagtgagcgccgcctgccaccgcttcgacttctacttcccca 792
               |||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||
Sbjct: 7521507 cagggtataaccggtgccccgcgaacgccgcctgccaccccttcgacttctacttcccca 7521566

                                                                           
Query: 793     cgcccgctgccctgtgcaacgagatctggagccactcctttgaagtcagcagctacagcc 852
               |||| ||||||||||||| | ||||||||||| ||||||   ||   |||| ||||||||
Sbjct: 7521567 cgcctgctgccctgtgcagccagatctggagcaactcctacaaacaaagcaactacagcc 7521626

                                                                           
Query: 853     ggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccccaacgagg 912
               |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 7521627 ggggcagcggccgctgcatccagatgtggttcgacccggaacagggcaaccccaacgagg 7521686

                               
Query: 913     cggtggcgagatacta 928
                |||||||||||||||
Sbjct: 7521687 tggtggcgagatacta 7521702



 Score =  220 bits (111), Expect = 1e-54
 Identities = 132/139 (94%)
 Strand = Plus / Plus

                                                                           
Query: 598     aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 657
               ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 7550990 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 7551049

                                                                           
Query: 658     gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 717
               ||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7551050 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 7551109

                                  
Query: 718     gctggaactggacctcagg 736
               |||||||||||| ||||||
Sbjct: 7551110 gctggaactggagctcagg 7551128



 Score =  137 bits (69), Expect = 2e-29
 Identities = 96/105 (91%)
 Strand = Plus / Plus

                                                                           
Query: 497     ctgggaccactgcggcaagatggagccggcctgcaagcgccacttcattcaagacacctg 556
               |||||| |||||||||| |||||||||||||||||||||||| ||||||||  ||| |||
Sbjct: 7550776 ctgggagcactgcggcaggatggagccggcctgcaagcgccatttcattcagaacaactg 7550835

                                                            
Query: 557     tctctatgagtgctcgcccaacctggggccctggatccaggaggt 601
               ||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 7550836 tctgtacgagtgctcgcccaacctggggccctggttccaggaggt 7550880



 Score =  131 bits (66), Expect = 9e-28
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                           
Query: 1       gggtgtgacgagtcagggagacactgcttccgggtgggcctccgggtgggcctccaggag 60
               |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 7507545 gggtgtgacgagtcagggagacactgcttccgagtgggcctccaggtgggcctccaggag 7507604

                             
Query: 61      ggccgaggcagagg 74
               ||||||||||||||
Sbjct: 7507605 ggccgaggcagagg 7507618



 Score =  115 bits (58), Expect = 6e-23
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                           
Query: 845     ctacagccggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccc 904
               ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 7551391 ctacagccggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccc 7551450

                                 
Query: 905     caacgaggcggtggcgag 922
               |||||||| ||| |||||
Sbjct: 7551451 caacgaggaggtagcgag 7551468



 Score =  103 bits (52), Expect = 2e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                           
Query: 319     gcgcccgggccaagtcggacatgctcaatgtctgcatggatgccaagcaccacaagccaa 378
               |||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||  | 
Sbjct: 7548455 gcgcccgggccaggacggacctgctcaacgtctgcatggatgccaagcaccacaaggtag 7548514

                                               
Query: 379     agccaagcccggaggacaagctgcacgaccag 410
               ||||| |||| |||||| ||||||||||||||
Sbjct: 7548515 agccaggccctgaggacgagctgcacgaccag 7548546



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                            
Query: 620      agagcggatcctgaacgtgcccctctgcaaagaggactgtcagatctggtgggaagactg 679
                ||||||||| ||| ||| |||||||||| | ||||||||| ||   |||||||  |||||
Sbjct: 30276659 agagcggattctggacgcgcccctctgccaggaggactgtgaggagtggtgggctgactg 30276718

                                     
Query: 680      ccgcacctcctacacctgcaa 700
                |||||| ||||||||||||||
Sbjct: 30276719 ccgcacatcctacacctgcaa 30276739



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                             
Query: 807       tgcaacgagatctggagccactcctttgaagtcagcagctacagccggggcagcggccgc 866
                 ||||| || |||||||| |||||||   ||||||||| |  ||||| ||||||  |||||
Sbjct: 139960585 tgcaatgatatctggagtcactcctacaaagtcagcaacctcagccagggcagtagccgc 139960644

                                                          
Query: 867       tgcatccagatgtggttcgacccggcccagggcaaccccaa 907
                 ||||||||||||||||| |||  |  |||||||||||||||
Sbjct: 139960645 tgcatccagatgtggtttgacttgatccagggcaaccccaa 139960685



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 340      tgctcaatgtctgcatggatgccaagcaccacaagccaaagccaagcccggaggacaa 397
                |||||||  |||||||| | ||||||| |||||||||| |||| ||||||||||||||
Sbjct: 30213249 tgctcaacatctgcatgaacgccaagccccacaagccagagcccagcccggaggacaa 30213306


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,484,493
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 18
Length of query: 1162
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1141
Effective length of database: 2,808,413,156
Effective search space: 3204399410996
Effective search space used: 3204399410996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)