Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068793.1| folate receptor beta [Bos taurus]. 447 e-126
Alignment gi|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus]. 382 e-106
Alignment gi|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus]. 382 e-106
Alignment gi|NP_001193461.1| folate receptor alpha [Bos taurus]. 372 e-103
Alignment gi|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, p... 138 1e-32
>ref|NP_001068793.1| folate receptor beta [Bos taurus].
Length = 253
Score = 447 bits (1150), Expect = e-126
Identities = 190/229 (82%), Positives = 210/229 (91%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
MPWKLT LLLFL + SVC AR RTDLLNVCMDAKHHK EPGPED+LH+QC PWKKNACC
Sbjct: 1 MPWKLTPLLLFLGWMTSVCSARTRTDLLNVCMDAKHHKAEPGPEDKLHNQCTPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
SARVS ELH+D SSLYNF+W+HCG+MEPAC+RHFIQ+NCLYECSPNLGPW QEVNQKWRK
Sbjct: 61 SARVSQELHKDTSSLYNFTWDHCGKMEPACQRHFIQDNCLYECSPNLGPWIQEVNQKWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFLNVPLCKEDC WWEDCRTSYTCKS+WH+GW+W+SGSN+CPTGT C TFE++FPTPA
Sbjct: 121 ERFLNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGSNKCPTGTICRTFEAYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSA 856
ALCEG+W+H YK +NYSRGSGRCIQMWFD A GNPNEEVARFYALAL+A
Sbjct: 181 ALCEGLWSHSYKLSNYSRGSGRCIQMWFDPALGNPNEEVARFYALALTA 229
>ref|NP_001193459.1| folate receptor 1 (adult)-like [Bos taurus].
Length = 241
Score = 382 bits (980), Expect = e-106
Identities = 165/240 (68%), Positives = 187/240 (77%), Gaps = 5/240 (2%)
Frame = +2
Query: 170 MPWKLTALLLFLA-----GVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWK 334
M W++T LLL G + RARTDLLNVCMDAKHHK EPGPED LH+QC PW+
Sbjct: 1 MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60
Query: 335 KNACCSARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVN 514
KNACCS S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW +EVN
Sbjct: 61 KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120
Query: 515 QKWRKERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESF 694
Q+WRKER L VPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG NQCP C F+ +
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180
Query: 695 FPTPAALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
FPTPAALC IW+H YK +NYSRGSGRCIQMWFD +GNPNEEVARFYA ++G+ G
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240
>ref|NP_001193456.1| folate receptor 1 (adult)-like [Bos taurus].
Length = 241
Score = 382 bits (980), Expect = e-106
Identities = 165/240 (68%), Positives = 187/240 (77%), Gaps = 5/240 (2%)
Frame = +2
Query: 170 MPWKLTALLLFLA-----GVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWK 334
M W++T LLL G + RARTDLLNVCMDAKHHK EPGPED LH+QC PW+
Sbjct: 1 MAWQMTQLLLLALVAAAWGAQAPRTPRARTDLLNVCMDAKHHKAEPGPEDSLHEQCSPWR 60
Query: 335 KNACCSARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVN 514
KNACCS S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW +EVN
Sbjct: 61 KNACCSVNTSIEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVN 120
Query: 515 QKWRKERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESF 694
Q+WRKER L VPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG NQCP C F+ +
Sbjct: 121 QRWRKERVLGVPLCKEDCQSWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVKAACHRFDFY 180
Query: 695 FPTPAALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
FPTPAALC IW+H YK +NYSRGSGRCIQMWFD +GNPNEEVARFYA ++G+ G
Sbjct: 181 FPTPAALCNEIWSHSYKVSNYSRGSGRCIQMWFDPFQGNPNEEVARFYAENPTSGSTPQG 240
>ref|NP_001193461.1| folate receptor alpha [Bos taurus].
Length = 251
Score = 372 bits (954), Expect = e-103
Identities = 158/228 (69%), Positives = 181/228 (79%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK+T LL L V +V AR T LLNVCM+A++HK +PGPED+LH QC PWKKNACC
Sbjct: 1 MAWKITPLLCLLVCVAAVGAARPGTQLLNVCMNARYHKEKPGPEDKLHGQCSPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S E H+D SSLY F W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW +EVNQ WRK
Sbjct: 61 FVNTSIEAHKDISSLYRFDWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIREVNQSWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WH+GW+W+SG NQCP C F+ +FPTPA
Sbjct: 121 ERILNVPLCKEDCQSWWEDCRTSYTCKSNWHRGWDWTSGYNQCPVKAACHRFDFYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
ALC IW+H YK +NYSRGSGRCIQMWFD NPNEEVARFYA +++
Sbjct: 181 ALCNEIWSHSYKASNYSRGSGRCIQMWFDPILDNPNEEVARFYAESMN 228
>ref|XP_002692961.1| PREDICTED: folate receptor 4 (delta)-like, partial [Bos taurus].
Length = 109
Score = 138 bits (347), Expect = 1e-32
Identities = 63/106 (59%), Positives = 74/106 (69%)
Frame = +2
Query: 191 LLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHE 370
LLL L V C +LLNVCM+AK HK EPGPE EL+++C+PWK NACC+A S E
Sbjct: 7 LLLGLWAVPPTCTGH---ELLNVCMNAKPHKPEPGPEAELYEECIPWKDNACCTASTSWE 63
Query: 371 LHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQE 508
H D S LYNFS HCG M P C+RHF+Q C Y+CSPNLGPW Q+
Sbjct: 64 AHLDVSLLYNFSLVHCGLMMPDCQRHFLQAICFYQCSPNLGPWIQQ 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,468,456
Number of extensions: 1433797
Number of successful extensions: 6943
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6886
Number of HSP's successfully gapped: 5
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534020.2| PREDICTED: similar to Folate receptor beta prec... 416 e-116
Alignment gi|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult)... 377 e-104
Alignment gi|XP_852006.1| PREDICTED: similar to Folate receptor beta prec... 292 3e-79
Alignment gi|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta)... 202 6e-52
>ref|XP_534020.2| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
(Folate receptor 2) (Folate receptor, fetal/placental)
(Placental folate-binding protein) (FBP) [Canis
familiaris].
Length = 263
Score = 416 bits (1069), Expect = e-116
Identities = 176/240 (73%), Positives = 198/240 (82%)
Frame = +2
Query: 155 QADKAMPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWK 334
Q K M W+L AL+L LA CRAR RTDLLNVCMDAKHHK +PGPED+LH QC PW+
Sbjct: 4 QGQKDMAWRLIALVLLLAWTAPTCRARVRTDLLNVCMDAKHHKAKPGPEDKLHAQCTPWR 63
Query: 335 KNACCSARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVN 514
K ACC+ S ELH+D S LYNF+W+HC +MEPACKRHFIQ+NCLYECSPNLGPW QEVN
Sbjct: 64 KKACCTVSTSQELHKDTSRLYNFTWDHCSKMEPACKRHFIQDNCLYECSPNLGPWIQEVN 123
Query: 515 QKWRKERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESF 694
Q WRKER L VPLC+EDC WW+DCRTSYTCKS+WH+GWNW+SG N+CP TTC TFE++
Sbjct: 124 QSWRKERILQVPLCREDCEQWWQDCRTSYTCKSNWHRGWNWTSGVNKCPARTTCRTFEAY 183
Query: 695 FPTPAALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
FPTPAALCEGIW+H YK TNY RGSGRCIQMWFD A+GNPNEEVARFYA A +AG M G
Sbjct: 184 FPTPAALCEGIWDHSYKATNYRRGSGRCIQMWFDPAQGNPNEEVARFYAGARNAGVMPQG 243
>ref|XP_851993.1| PREDICTED: similar to folate receptor 1 (adult) [Canis familiaris].
Length = 252
Score = 377 bits (968), Expect = e-104
Identities = 161/226 (71%), Positives = 179/226 (79%)
Frame = +2
Query: 185 TALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVS 364
T +L L GV +V AR RT+LLNVCMDAKHHK +P PED LH QC PWKKN+CC A S
Sbjct: 7 TQVLFLLVGVAAVWTARPRTELLNVCMDAKHHKEKPSPEDGLHKQCSPWKKNSCCFANTS 66
Query: 365 HELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKERFLN 544
E H+D S LY F+W HCG M PACK+HFIQ+ CLYECSPNLGPW QEVNQ WRKER L+
Sbjct: 67 REAHKDISYLYRFNWNHCGSMTPACKKHFIQDTCLYECSPNLGPWIQEVNQSWRKERILH 126
Query: 545 VPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEG 724
VPLCKEDC WW+DCRTSYTCKS+WHKGWNW+SG NQCP G C F +FPT AALC
Sbjct: 127 VPLCKEDCEQWWQDCRTSYTCKSNWHKGWNWTSGYNQCPEGAACHPFHFYFPTSAALCSE 186
Query: 725 IWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGT 862
IW+H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S T
Sbjct: 187 IWSHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYARAMSEAT 232
>ref|XP_852006.1| PREDICTED: similar to Folate receptor beta precursor (FR-beta)
(Folate receptor 2) (Folate receptor, fetal/placental)
(Placental folate-binding protein) (FBP) [Canis
familiaris].
Length = 223
Score = 292 bits (748), Expect = 3e-79
Identities = 123/186 (66%), Positives = 146/186 (78%)
Frame = +2
Query: 215 VSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHELHRDKSSL 394
+S+ A +L NV + VEP L +C PW+K ACC+ S ELH+D S L
Sbjct: 28 LSLEEAANELELFNV---ERSRNVEP-----LRSRCTPWRKKACCTVSTSQELHKDTSRL 79
Query: 395 YNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKERFLNVPLCKEDCLD 574
YNF+W+HCG+MEPACKRHFIQ+NCLYECSPNLGPW QEVNQ WRKER L+VPLC+EDC
Sbjct: 80 YNFTWDHCGKMEPACKRHFIQDNCLYECSPNLGPWIQEVNQSWRKERILHVPLCREDCEQ 139
Query: 575 WWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEGIWNHDYKFTN 754
WW+DCRTSYTCKS+WH+GWNW+SG N+CP TTC T+E++FPTPAALCEGIW+H YK TN
Sbjct: 140 WWQDCRTSYTCKSNWHRGWNWTSGVNKCPARTTCRTYEAYFPTPAALCEGIWDHSYKATN 199
Query: 755 YSRGSG 772
YSRGSG
Sbjct: 200 YSRGSG 205
>ref|XP_849316.1| PREDICTED: similar to folate receptor 4 (delta) isoform 1 [Canis
familiaris].
Length = 219
Score = 202 bits (513), Expect = 6e-52
Identities = 87/155 (56%), Positives = 104/155 (67%)
Frame = +2
Query: 203 LAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHELHRD 382
L G+ V A +LLNVCM KHHK EPGPED+L+++C+PW + ACC+A S H D
Sbjct: 8 LLGLWMVMPVWAGDELLNVCMKTKHHKREPGPEDKLYEECIPWAEKACCTASTSWHAHLD 67
Query: 383 KSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKERFLNVPLCKE 562
S LYNFS HCG M P C+ HFIQ C YECSPNLGPW Q+V + ER + PLC+E
Sbjct: 68 VSLLYNFSLLHCGLMMPGCEEHFIQAVCFYECSPNLGPWIQKVGSSGQGERIRDAPLCRE 127
Query: 563 DCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTG 667
DC WWEDCRTSYTC+S W W+WS G+ TG
Sbjct: 128 DCEQWWEDCRTSYTCRSDWLGSWDWSRGAVSSFTG 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,027,243
Number of extensions: 1436668
Number of successful extensions: 6952
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6906
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107008.1| folate receptor beta precursor [Homo sapiens]. 411 e-115
Alignment gi|NP_001107007.1| folate receptor beta precursor [Homo sapiens]. 411 e-115
Alignment gi|NP_001107006.1| folate receptor beta precursor [Homo sapiens]. 411 e-115
Alignment gi|NP_000794.3| folate receptor beta precursor [Homo sapiens]. 411 e-115
Alignment gi|NP_000795.2| folate receptor gamma precursor [Homo sapiens]. 402 e-112
Alignment gi|NP_057936.1| folate receptor alpha precursor [Homo sapiens]. 369 e-102
Alignment gi|NP_057937.1| folate receptor alpha precursor [Homo sapiens]. 369 e-102
Alignment gi|NP_000793.1| folate receptor alpha precursor [Homo sapiens]. 369 e-102
Alignment gi|NP_057941.1| folate receptor alpha precursor [Homo sapiens]. 369 e-102
Alignment gi|NP_001186135.1| probable folate receptor delta [Homo sapiens]. 277 1e-74
>ref|NP_001107008.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 411 bits (1056), Expect = e-115
Identities = 175/238 (73%), Positives = 202/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK LLL L V ++C A+ RTDLLNVCMDAKHHK +PGPED+LHDQC PWKKNACC
Sbjct: 1 MVWKWMPLLLLLVCVATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
+A S ELH+D S LYNF+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW Q+VNQ WRK
Sbjct: 61 TASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFL+VPLCKEDC WWEDC TS+TCKS+WH+GW+W+SG N+CP G C TFES+FPTPA
Sbjct: 121 ERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALAL--SAGTMSLGT 877
ALCEG+W+H YK +NYSRGSGRCIQMWFD+A+GNPNEEVARFYA A+ +AG M GT
Sbjct: 181 ALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGT 238
>ref|NP_001107007.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 411 bits (1056), Expect = e-115
Identities = 175/238 (73%), Positives = 202/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK LLL L V ++C A+ RTDLLNVCMDAKHHK +PGPED+LHDQC PWKKNACC
Sbjct: 1 MVWKWMPLLLLLVCVATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
+A S ELH+D S LYNF+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW Q+VNQ WRK
Sbjct: 61 TASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFL+VPLCKEDC WWEDC TS+TCKS+WH+GW+W+SG N+CP G C TFES+FPTPA
Sbjct: 121 ERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALAL--SAGTMSLGT 877
ALCEG+W+H YK +NYSRGSGRCIQMWFD+A+GNPNEEVARFYA A+ +AG M GT
Sbjct: 181 ALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGT 238
>ref|NP_001107006.1| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 411 bits (1056), Expect = e-115
Identities = 175/238 (73%), Positives = 202/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK LLL L V ++C A+ RTDLLNVCMDAKHHK +PGPED+LHDQC PWKKNACC
Sbjct: 1 MVWKWMPLLLLLVCVATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
+A S ELH+D S LYNF+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW Q+VNQ WRK
Sbjct: 61 TASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFL+VPLCKEDC WWEDC TS+TCKS+WH+GW+W+SG N+CP G C TFES+FPTPA
Sbjct: 121 ERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALAL--SAGTMSLGT 877
ALCEG+W+H YK +NYSRGSGRCIQMWFD+A+GNPNEEVARFYA A+ +AG M GT
Sbjct: 181 ALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGT 238
>ref|NP_000794.3| folate receptor beta precursor [Homo sapiens].
Length = 255
Score = 411 bits (1056), Expect = e-115
Identities = 175/238 (73%), Positives = 202/238 (84%), Gaps = 2/238 (0%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK LLL L V ++C A+ RTDLLNVCMDAKHHK +PGPED+LHDQC PWKKNACC
Sbjct: 1 MVWKWMPLLLLLVCVATMCSAQDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
+A S ELH+D S LYNF+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW Q+VNQ WRK
Sbjct: 61 TASTSQELHKDTSRLYNFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQQVNQSWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFL+VPLCKEDC WWEDC TS+TCKS+WH+GW+W+SG N+CP G C TFES+FPTPA
Sbjct: 121 ERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPAGALCRTFESYFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALAL--SAGTMSLGT 877
ALCEG+W+H YK +NYSRGSGRCIQMWFD+A+GNPNEEVARFYA A+ +AG M GT
Sbjct: 181 ALCEGLWSHSYKVSNYSRGSGRCIQMWFDSAQGNPNEEVARFYAAAMHVNAGEMLHGT 238
>ref|NP_000795.2| folate receptor gamma precursor [Homo sapiens].
Length = 245
Score = 402 bits (1033), Expect = e-112
Identities = 171/239 (71%), Positives = 198/239 (82%), Gaps = 4/239 (1%)
Frame = +2
Query: 170 MPWKLTALLLFL----AGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKK 337
M W++ LLL AG ARARTDLLNVCM+AKHHK +P PEDEL+ QC PWKK
Sbjct: 3 MAWQMMQLLLLALVTAAGSAQPRSARARTDLLNVCMNAKHHKTQPSPEDELYGQCSPWKK 62
Query: 338 NACCSARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQ 517
NACC+A S ELH+D S LYNF+W+HCG+MEP CKRHFIQ++CLYECSPNLGPW ++VNQ
Sbjct: 63 NACCTASTSQELHKDTSRLYNFNWDHCGKMEPTCKRHFIQDSCLYECSPNLGPWIRQVNQ 122
Query: 518 KWRKERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFF 697
WRKER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG N+CP G C TFES+F
Sbjct: 123 SWRKERILNVPLCKEDCERWWEDCRTSYTCKSNWHKGWNWTSGINECPAGALCSTFESYF 182
Query: 698 PTPAALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
PTPAALCEG+W+H +K +NYSRGSGRCIQMWFD+A+GNPNEEVA+FYA A++AG S G
Sbjct: 183 PTPAALCEGLWSHSFKVSNYSRGSGRCIQMWFDSAQGNPNEEVAKFYAAAMNAGAPSRG 241
>ref|NP_057936.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 369 bits (947), Expect = e-102
Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 5/228 (2%)
Frame = +2
Query: 185 TALLLFLAGVVSVCRAR-----ARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
T LLL L V V A+ ART+LLNVCM+AKHHK +PGPED+LH+QC PW+KNACC
Sbjct: 7 TQLLLLLVWVAVVGEAQTRIAWARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACC 66
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W HCG M PACKRHFIQ+ CLYECSPNLGPW Q+V+Q WRK
Sbjct: 67 STNTSQEAHKDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRK 126
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG N+C G C F +FPTP
Sbjct: 127 ERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPT 186
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
LC IW H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S
Sbjct: 187 VLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAMS 234
>ref|NP_057937.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 369 bits (947), Expect = e-102
Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 5/228 (2%)
Frame = +2
Query: 185 TALLLFLAGVVSVCRAR-----ARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
T LLL L V V A+ ART+LLNVCM+AKHHK +PGPED+LH+QC PW+KNACC
Sbjct: 7 TQLLLLLVWVAVVGEAQTRIAWARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACC 66
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W HCG M PACKRHFIQ+ CLYECSPNLGPW Q+V+Q WRK
Sbjct: 67 STNTSQEAHKDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRK 126
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG N+C G C F +FPTP
Sbjct: 127 ERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPT 186
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
LC IW H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S
Sbjct: 187 VLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAMS 234
>ref|NP_000793.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 369 bits (947), Expect = e-102
Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 5/228 (2%)
Frame = +2
Query: 185 TALLLFLAGVVSVCRAR-----ARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
T LLL L V V A+ ART+LLNVCM+AKHHK +PGPED+LH+QC PW+KNACC
Sbjct: 7 TQLLLLLVWVAVVGEAQTRIAWARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACC 66
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W HCG M PACKRHFIQ+ CLYECSPNLGPW Q+V+Q WRK
Sbjct: 67 STNTSQEAHKDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRK 126
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG N+C G C F +FPTP
Sbjct: 127 ERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPT 186
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
LC IW H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S
Sbjct: 187 VLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAMS 234
>ref|NP_057941.1| folate receptor alpha precursor [Homo sapiens].
Length = 257
Score = 369 bits (947), Expect = e-102
Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 5/228 (2%)
Frame = +2
Query: 185 TALLLFLAGVVSVCRAR-----ARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
T LLL L V V A+ ART+LLNVCM+AKHHK +PGPED+LH+QC PW+KNACC
Sbjct: 7 TQLLLLLVWVAVVGEAQTRIAWARTELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACC 66
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W HCG M PACKRHFIQ+ CLYECSPNLGPW Q+V+Q WRK
Sbjct: 67 STNTSQEAHKDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRK 126
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG N+C G C F +FPTP
Sbjct: 127 ERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPT 186
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
LC IW H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S
Sbjct: 187 VLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAMS 234
>ref|NP_001186135.1| probable folate receptor delta [Homo sapiens].
Length = 250
Score = 277 bits (709), Expect = 1e-74
Identities = 119/218 (54%), Positives = 150/218 (68%), Gaps = 7/218 (3%)
Frame = +2
Query: 236 ARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHELHRDKSSLYNFSWEH 415
A +LLN+CM+AKHHK P PED+L+++C+PWK NACC+ S E H D S LYNFS H
Sbjct: 19 AGDELLNICMNAKHHKRVPSPEDKLYEECIPWKDNACCTLTTSWEAHLDVSPLYNFSLFH 78
Query: 416 CGRMEPACKRHFIQNNCLYECSPNLGPWFQ-------EVNQKWRKERFLNVPLCKEDCLD 574
CG + P C++HFIQ C YECSPNLGPW Q EV + ER +NVPLC+EDC +
Sbjct: 79 CGLLMPGCRKHFIQAICFYECSPNLGPWIQPVGSLGWEVAPSGQGERVVNVPLCQEDCEE 138
Query: 575 WWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEGIWNHDYKFTN 754
WWEDCR SYTCKS+W GW+WS G N+CP G C F +FPTPA LCE W++ +K +
Sbjct: 139 WWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGAQCLPFSHYFPTPADLCEKTWSNSFKASP 198
Query: 755 YSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMS 868
R SGRC+Q WF+ A+GNPN VAR +A + + +S
Sbjct: 199 ERRNSGRCLQKWFEPAQGNPNVAVARLFASSAPSWELS 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,091,634
Number of extensions: 1406293
Number of successful extensions: 6576
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6501
Number of HSP's successfully gapped: 10
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032061.1| folate receptor beta precursor [Mus musculus]. 378 e-105
Alignment gi|NP_032060.2| folate receptor alpha precursor [Mus musculus]. 367 e-101
Alignment gi|NP_075026.1| probable folate receptor delta isoform 1 [Mus m... 244 7e-65
Alignment gi|NP_789777.1| probable folate receptor delta isoform 2 [Mus m... 182 4e-46
>ref|NP_032061.1| folate receptor beta precursor [Mus musculus].
Length = 251
Score = 378 bits (971), Expect = e-105
Identities = 161/232 (69%), Positives = 190/232 (81%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M WK T LLL L +V+ R RTDLLNVCMDAKHHK +PGPED+LHDQC PWKKNACC
Sbjct: 1 MAWKQTPLLL-LVYMVTTGSGRDRTDLLNVCMDAKHHKTKPGPEDKLHDQCSPWKKNACC 59
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S ELH+ S LY F+W+HCG+MEPACK HFIQ++CLYECSPNLGPW Q+V+Q WRK
Sbjct: 60 SVNTSQELHKADSRLY-FNWDHCGKMEPACKSHFIQDSCLYECSPNLGPWIQQVDQSWRK 118
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFL+VPLCKEDC WWE CRTS+TCK WHKGW+WSSG N+CP C TFE +FPTPA
Sbjct: 119 ERFLDVPLCKEDCHQWWEACRTSFTCKRDWHKGWDWSSGINKCPNTAPCHTFEYYFPTPA 178
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTM 865
+LCEG+W+H YK +NYSRGSGRCIQMWFD+ +GNPNE+V +FYA +++GT+
Sbjct: 179 SLCEGLWSHSYKVSNYSRGSGRCIQMWFDSTQGNPNEDVVKFYASFMTSGTV 230
>ref|NP_032060.2| folate receptor alpha precursor [Mus musculus].
Length = 255
Score = 367 bits (941), Expect = e-101
Identities = 155/228 (67%), Positives = 180/228 (78%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M +L L++++A RART+LLNVCMDAKHHK +PGPED LHDQC PWK N+CC
Sbjct: 5 MTVQLLLLVMWMAECAQSRATRARTELLNVCMDAKHHKEKPGPEDNLHDQCSPWKTNSCC 64
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W HCG M CKRHFIQ+ CLYECSPNLGPW Q+V+Q WRK
Sbjct: 65 STNTSQEAHKDISYLYRFNWNHCGTMTSECKRHFIQDTCLYECSPNLGPWIQQVDQSWRK 124
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER L+VPLCKEDC WWEDC++S+TCKS+WHKGWNWSSG N+CP G +C F +FPT A
Sbjct: 125 ERILDVPLCKEDCQQWWEDCQSSFTCKSNWHKGWNWSSGHNECPVGASCHPFTFYFPTSA 184
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALS 853
ALCE IW+H YK +NYSRGSGRCIQMWFD A+GNPNEEVARFYA A+S
Sbjct: 185 ALCEEIWSHSYKLSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAEAMS 232
>ref|NP_075026.1| probable folate receptor delta isoform 1 [Mus musculus].
Length = 244
Score = 244 bits (624), Expect = 7e-65
Identities = 111/223 (49%), Positives = 141/223 (63%), Gaps = 1/223 (0%)
Frame = +2
Query: 203 LAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHELHRD 382
L G+ +V A LL+VCM++K HK EPGPEDEL+ +C PW+ NACC+ S E H +
Sbjct: 8 LLGLWAVLPTLAGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLE 67
Query: 383 KSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKE-RFLNVPLCK 559
+ L+NFS HCG + PAC++HFIQ C +ECSPNLGPW Q V ++E R VPLC+
Sbjct: 68 EPLLFNFSMMHCGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQ 127
Query: 560 EDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEGIWNHD 739
EDC DWW C +S TCKS+W GW+WS CP C F FPTP LCE IWN+
Sbjct: 128 EDCEDWWRACHSSLTCKSNWLHGWDWSEEKKHCPAHEPCLPFSYHFPTPDDLCEKIWNNT 187
Query: 740 YKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMS 868
+K + R SGRC+Q WF+ NPN EVA +A + A +S
Sbjct: 188 FKASPERRNSGRCLQKWFEPTLSNPNVEVALHFAGSALAPQLS 230
>ref|NP_789777.1| probable folate receptor delta isoform 2 [Mus musculus].
Length = 172
Score = 182 bits (462), Expect = 4e-46
Identities = 79/147 (53%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Frame = +2
Query: 203 LAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSHELHRD 382
L G+ +V A LL+VCM++K HK EPGPEDEL+ +C PW+ NACC+ S E H +
Sbjct: 8 LLGLWAVLPTLAGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLE 67
Query: 383 KSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKE-RFLNVPLCK 559
+ L+NFS HCG + PAC++HFIQ C +ECSPNLGPW Q V ++E R VPLC+
Sbjct: 68 EPLLFNFSMMHCGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQ 127
Query: 560 EDCLDWWEDCRTSYTCKSSWHKGWNWS 640
EDC DWW C +S TCKS+W GW+WS
Sbjct: 128 EDCEDWWRACHSSLTCKSNWLHGWDWS 154
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,535,490
Number of extensions: 1158423
Number of successful extensions: 5270
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5187
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999018.1| folate receptor 2 [Sus scrofa]. 530 e-151
Alignment gi|NP_998995.1| folate receptor 1 [Sus scrofa]. 379 e-105
Alignment gi|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus s... 377 e-105
Alignment gi|NP_999476.1| folate receptor alpha [Sus scrofa]. 367 e-102
Alignment gi|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus s... 362 e-100
>ref|NP_999018.1| folate receptor 2 [Sus scrofa].
Length = 253
Score = 530 bits (1366), Expect = e-151
Identities = 236/236 (100%), Positives = 236/236 (100%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC
Sbjct: 1 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 60
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK
Sbjct: 61 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 120
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA
Sbjct: 121 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 180
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLGT 877
ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLGT
Sbjct: 181 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLGT 236
>ref|NP_998995.1| folate receptor 1 [Sus scrofa].
Length = 252
Score = 379 bits (972), Expect = e-105
Identities = 161/235 (68%), Positives = 190/235 (80%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M W+LT L + L V +V ARA++D+LNVCMDAKHHK +P PED+LHDQC PW+KN+CC
Sbjct: 1 MAWRLT-LFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 59
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+
Sbjct: 60 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 119
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG NQCP C F+ +FPTPA
Sbjct: 120 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 179
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
ALC IW+H ++ ++YSRGSGRCIQMWFD A+GNPNE VAR+YA AG ++ G
Sbjct: 180 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPAQGNPNEAVARYYAENGDAGAVAQG 234
>ref|XP_003357224.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
Length = 252
Score = 377 bits (967), Expect = e-105
Identities = 161/235 (68%), Positives = 189/235 (80%)
Frame = +2
Query: 170 MPWKLTALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACC 349
M W+LT L + L V +V ARA++D+LNVCMDAKHHK +P PED+LHDQC PW+KN+CC
Sbjct: 1 MAWRLT-LFVLLGLVAAVGGARAKSDMLNVCMDAKHHKPKPSPEDKLHDQCSPWRKNSCC 59
Query: 350 SARVSHELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRK 529
S S E H+D S LY F+W+HCG+MEPACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+
Sbjct: 60 SVNTSLEAHKDISYLYRFNWDHCGKMEPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRR 119
Query: 530 ERFLNVPLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPA 709
ER LNVPLCKEDC WWEDCRTSYTCKS+WHKGWNW+SG NQCP C F+ +FPTPA
Sbjct: 120 ERILNVPLCKEDCQIWWEDCRTSYTCKSNWHKGWNWTSGYNQCPVSAACHRFDFYFPTPA 179
Query: 710 ALCEGIWNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMSLG 874
ALC IW+H ++ ++YSRGSGRCIQMWFD A GNPNE VAR+YA AG ++ G
Sbjct: 180 ALCNEIWSHSFEVSSYSRGSGRCIQMWFDPALGNPNEAVARYYAENGDAGAVAQG 234
>ref|NP_999476.1| folate receptor alpha [Sus scrofa].
Length = 249
Score = 367 bits (942), Expect = e-102
Identities = 158/227 (69%), Positives = 181/227 (79%)
Frame = +2
Query: 188 ALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSH 367
A LL L V+V A AR DLLN+CMDAKHHK +PGPED LH+QC PW+ NACCS S
Sbjct: 6 ARLLLLLVCVAVTWA-ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQ 64
Query: 368 ELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKERFLNV 547
E H D S LY F+WEHCG+M+PACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+ER LNV
Sbjct: 65 EAHNDISYLYKFNWEHCGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNV 124
Query: 548 PLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEGI 727
PLCKEDC +WWEDCRTSYTCKS+WH+GWNWSSG N+CP C F+ +FPTPAALC I
Sbjct: 125 PLCKEDCQNWWEDCRTSYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQI 184
Query: 728 WNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMS 868
W++ YK +NYSRGSGRCIQMWFD +GNPNE VAR+YA +S +S
Sbjct: 185 WSNSYKQSNYSRGSGRCIQMWFDPEQGNPNEVVARYYAQIMSGAGLS 231
>ref|XP_003357225.1| PREDICTED: folate receptor alpha-like [Sus scrofa].
Length = 249
Score = 362 bits (930), Expect = e-100
Identities = 156/227 (68%), Positives = 180/227 (79%)
Frame = +2
Query: 188 ALLLFLAGVVSVCRARARTDLLNVCMDAKHHKVEPGPEDELHDQCVPWKKNACCSARVSH 367
A LL L V+V A AR DLLN+CMDAKHHK +PGPED LH+QC PW+ NACCS S
Sbjct: 6 ARLLLLLVCVAVTWA-ARPDLLNICMDAKHHKTKPGPEDGLHEQCSPWEMNACCSVNTSQ 64
Query: 368 ELHRDKSSLYNFSWEHCGRMEPACKRHFIQNNCLYECSPNLGPWFQEVNQKWRKERFLNV 547
E H D S LY F+WEHCG+M+PACKRHFIQ+ CLYECSPNLGPW QEVNQKWR+ER LNV
Sbjct: 65 EAHNDISYLYKFNWEHCGKMKPACKRHFIQDTCLYECSPNLGPWIQEVNQKWRRERILNV 124
Query: 548 PLCKEDCLDWWEDCRTSYTCKSSWHKGWNWSSGSNQCPTGTTCDTFESFFPTPAALCEGI 727
PLCKEDC +WWEDCRTSYTCKS+WH+GWNWSSG N+CP C F+ +FPTPAALC I
Sbjct: 125 PLCKEDCQNWWEDCRTSYTCKSNWHEGWNWSSGYNRCPANAACHPFDFYFPTPAALCSQI 184
Query: 728 WNHDYKFTNYSRGSGRCIQMWFDAAEGNPNEEVARFYALALSAGTMS 868
W++ YK ++YSRGSGRCIQMWFD +GNPNE AR+YA +S +S
Sbjct: 185 WSNSYKQSHYSRGSGRCIQMWFDPEQGNPNEVWARYYAQIMSGAGLS 231
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,265,114
Number of extensions: 957355
Number of successful extensions: 4586
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4530
Number of HSP's successfully gapped: 5
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007262
(1094 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 868 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 868 bits (438), Expect = 0.0
Identities = 449/453 (99%)
Strand = Plus / Plus
Query: 642 caggatctaaccagtgtcccacggggaccacctgcgacacatttgagtccttcttcccca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551279 caggatctaaccagtgtcccacggggaccacctgcgacacatttgagtccttcttcccca 7551338
Query: 702 cacccgcagcgctgtgtgagggcatctggaatcacgattataagttcaccaactacagcc 761
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551339 caccggcagcgctgtgtgagggcatctggaatcacgattataagttcaccaactacagcc 7551398
Query: 762 ggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccccaacgagg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551399 ggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccccaacgagg 7551458
Query: 822 aggtagcgaggttctacgccttggccttgagtgcggggaccatgtcccttgggaccgggc 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551459 aggtagcgaggttctacgccttggccttgagtgcggggaccatgtcccttgggaccgggc 7551518
Query: 882 ctctcctgctcagcgcagccctgatgctgccacttgggctccttgactgagtccggccgt 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551519 ctctcctgctcagcgcagccctgatgctgccacttgggctccttgactgagtccggccgt 7551578
Query: 942 ctccagacggtccttctgcctgtccccagctttgatgaccaggctggtctcaactcagct 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551579 ctccagacggtccttctgcctgtccccagctttgatgaccaggctggtctcaactcagct 7551638
Query: 1002 cccaccaatgagggagccctaagcccgcctcatctgttacccatccctctgtcatcangt 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7551639 cccaccaatgagggagccctaagcccgcctcatctgttacccatccctctgtcatcaagt 7551698
Query: 1062 ccctgccgtaaggtgggccttggggtctctctg 1094
||||||||| ||||||||||||||||||||||
Sbjct: 7551699 tcctgccgtagggtgggccttggggtctctctg 7551731
Score = 379 bits (191), Expect = e-102
Identities = 194/195 (99%)
Strand = Plus / Plus
Query: 316 ccagtgcgtcccctggaagaagaacgcctgctgctccgccagagtcagccacgagctgca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550686 ccagtgcgtcccctggaagaagaacgcctgctgctccgccagagtcagccacgagctgca 7550745
Query: 376 ccgggacaagtcctccctgtataacttttcctgggagcactgcggcaggatggagccggc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550746 ccgggacaagtcctccctgtataacttttcctgggagcactgcggcaggatggagccggc 7550805
Query: 436 ctgcaagcgccacttcattcagaacaactgtctgtacgagtgctcgcccaacctggggcc 495
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550806 ctgcaagcgccatttcattcagaacaactgtctgtacgagtgctcgcccaacctggggcc 7550865
Query: 496 ctggttccaggaggt 510
|||||||||||||||
Sbjct: 7550866 ctggttccaggaggt 7550880
Score = 321 bits (162), Expect = 5e-85
Identities = 165/166 (99%)
Strand = Plus / Plus
Query: 154 gcaggcagacaaagccatgccctggaagctgacagcccttctgctctttctggccggggt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7548381 gcaggcagacaaagccatgccctggaagctgacagcccttctgctctttctggccggggt 7548440
Query: 214 ggtctccgtgtgccgtgcccgggccaggacggacctgctcaacgtctgcatggatgccaa 273
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7548441 ggtctccgtgtgccgcgcccgggccaggacggacctgctcaacgtctgcatggatgccaa 7548500
Query: 274 gcaccacaaggtagagccaggccctgaggacgagctgcacgaccag 319
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7548501 gcaccacaaggtagagccaggccctgaggacgagctgcacgaccag 7548546
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 507 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550990 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 7551049
Query: 567 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551050 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 7551109
Query: 627 gctggaactggagctcagg 645
|||||||||||||||||||
Sbjct: 7551110 gctggaactggagctcagg 7551128
Score = 228 bits (115), Expect = 5e-57
Identities = 133/139 (95%)
Strand = Plus / Plus
Query: 507 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 566
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 7521228 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7521287
Query: 567 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 626
||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 7521288 gtcagaactggtgggaagactgccgcacctcctacacctgcaagagcaactggcacgagg 7521347
Query: 627 gctggaactggagctcagg 645
|||||||||||||||||||
Sbjct: 7521348 gctggaactggagctcagg 7521366
Score = 220 bits (111), Expect = 1e-54
Identities = 132/139 (94%)
Strand = Plus / Plus
Query: 507 aggtgaaccagaagtggcgcaaagagcggttcctgaacgtgcccctctgcaaagaggact 566
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 7511218 aggtgaaccagaagtggcgcagagagcggatcctgaacgtgcccctctgcaaagaggact 7511277
Query: 567 gtctggactggtgggaagactgccgcacctcctacacctgcaagagcagctggcacaagg 626
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7511278 gtcagatctggtgggaagactgccgcacctcctacacctgcaagagcaactggcacaagg 7511337
Query: 627 gctggaactggagctcagg 645
|||||||||||| ||||||
Sbjct: 7511338 gctggaactggacctcagg 7511356
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tggtatttttgcttaccagggcgtcttggcaggctgtcctgtgccctgggcggagaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547129 tggtatttttgcttaccagggcgtcttggcaggctgtcctgtgccctgggcggagaccac 7547188
Query: 61 agcgccagcggcctgcagaggctgccagcccgggcagaggccct 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547189 agcgccagcggcctgcagaggctgccagcccgggcagaggccct 7547232
Score = 145 bits (73), Expect = 6e-32
Identities = 97/105 (92%)
Strand = Plus / Plus
Query: 406 ctgggagcactgcggcaggatggagccggcctgcaagcgccacttcattcagaacaactg 465
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 7510921 ctgggaccactgcggcaagatggagccggcctgcaagcgccacttcattcaagacacctg 7510980
Query: 466 tctgtacgagtgctcgcccaacctggggccctggttccaggaggt 510
||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 7510981 tctctatgagtgctcgcccaacctggggccctggatccaggaggt 7511025
Score = 145 bits (73), Expect = 6e-32
Identities = 97/105 (92%)
Strand = Plus / Plus
Query: 406 ctgggagcactgcggcaggatggagccggcctgcaagcgccacttcattcagaacaactg 465
||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||
Sbjct: 7520124 ctgggagcactgcggcaagatgaagccggcctgcaagcgccacttcattcaagacacctg 7520183
Query: 466 tctgtacgagtgctcgcccaacctggggccctggttccaggaggt 510
||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 7520184 tctctatgagtgctcgcccaacctggggccctggatccaggaggt 7520228
Score = 115 bits (58), Expect = 5e-23
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 754 ctacagccggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccc 813
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 7511597 ctacagccggggcagcggccgctgcatccagatgtggttcgacccggcccagggcaaccc 7511656
Query: 814 caacgaggaggtagcgag 831
|||||||| ||| |||||
Sbjct: 7511657 caacgaggcggtggcgag 7511674
Score = 109 bits (55), Expect = 3e-21
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 751 caactacagccggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaa 810
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 7521616 caactacagccggggcagcggccgctgcatccagatgtggttcgacccggaacagggcaa 7521675
Query: 811 ccccaacgaggaggtagcgaggttctacgcc 841
||||||||||| ||| ||||| | |||||||
Sbjct: 7521676 ccccaacgaggtggtggcgagatactacgcc 7521706
Score = 99.6 bits (50), Expect = 3e-18
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 230 gcccgggccaggacggacctgctcaacgtctgcatggatgccaagcaccacaaggtagag 289
|||||||||| | ||||| ||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 7508762 gcccgggccaagtcggacatgctcaatgtctgcatggatgccaagcaccacaagccaaag 7508821
Query: 290 ccaggccctgaggacgagctgcacgaccag 319
||| |||| |||||| ||||||||||||||
Sbjct: 7508822 ccaagcccggaggacaagctgcacgaccag 7508851
Score = 65.9 bits (33), Expect = 4e-08
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 529 agagcggttcctgaacgtgcccctctgcaaagaggactgtctggactggtgggaagactg 588
||||||| | ||| ||| |||||||||| | ||||||||| ||| ||||||| |||||
Sbjct: 30276659 agagcggattctggacgcgcccctctgccaggaggactgtgaggagtggtgggctgactg 30276718
Query: 589 ccgcacctcctacacctgcaa 609
|||||| ||||||||||||||
Sbjct: 30276719 ccgcacatcctacacctgcaa 30276739
Score = 65.9 bits (33), Expect = 4e-08
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 757 cagccggggcagcggccgctgcatccagatgtggtttgacgcggccgagggcaaccccaa 816
||||| |||||| |||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 139960626 cagccagggcagtagccgctgcatccagatgtggtttgacttgatccagggcaaccccaa 139960685
Query: 817 cgaggaggtagcgaggttcta 837
||||| ||||||||||||
Sbjct: 139960686 taaggagacagcgaggttcta 139960706
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,428,876
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 14
Length of query: 1094
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1073
Effective length of database: 2,808,413,156
Effective search space: 3013427316388
Effective search space used: 3013427316388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)