Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030254.1| succinyl-CoA ligase [GDP-forming] subunit al... 468 e-132
>ref|NP_001030254.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Bos taurus].
Length = 346
Score = 468 bits (1204), Expect = e-132
Identities = 236/313 (75%), Positives = 243/313 (77%)
Frame = +3
Query: 186 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 365
QQNGIRHCSYT SRKHLYVD+NTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 34 QQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGK 93
Query: 366 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 545
VFNTVKEAKEQTGATASVIYVPPPF V LVVCITEGIPQQDMV
Sbjct: 94 THLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMV 153
Query: 546 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 725
RVKH+LLRQGKTRL+GPNCPGVINPGECKIGIMPGHIHKKGR+GIVSRSGTLTYEAVHQT
Sbjct: 154 RVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQT 213
Query: 726 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 905
TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP FLKQH
Sbjct: 214 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQH 273
Query: 906 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1085
NSGPK+KPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 274 NSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLG 333
Query: 1086 TTIYKEFEKRKML 1124
TT+YKEFEKRKML
Sbjct: 334 TTMYKEFEKRKML 346
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,209,244
Number of extensions: 1123555
Number of successful extensions: 3294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3290
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 342
Effective length of database: 14,207,134
Effective search space: 4858839828
Effective search space used: 4858839828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532985.2| PREDICTED: similar to succinate-CoA ligase, GDP... 468 e-132
Alignment gi|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP... 51 2e-06
Alignment gi|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
Alignment gi|XP_861122.1| PREDICTED: similar to ATP citrate lyase isoform... 51 2e-06
>ref|XP_532985.2| PREDICTED: similar to succinate-CoA ligase, GDP-forming, alpha
subunit [Canis familiaris].
Length = 333
Score = 468 bits (1203), Expect = e-132
Identities = 237/313 (75%), Positives = 243/313 (77%)
Frame = +3
Query: 186 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 365
QQNGIRHCSY ASRKHLYVDKNTKVICQGFTGKQGTFHSQQAL+YGT LV
Sbjct: 21 QQNGIRHCSYIASRKHLYVDKNTKVICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGK 80
Query: 366 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 545
VFNTVKEAKE+TGATASVIYVPPPF VPLVVCITEGIPQQDMV
Sbjct: 81 THLGLPVFNTVKEAKEETGATASVIYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMV 140
Query: 546 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 725
RVKH+LLRQGKTRLIGPNCPG+INPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT
Sbjct: 141 RVKHKLLRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 200
Query: 726 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 905
TQVGLGQSLCVGIGGDPFNGTDF DCLEIFLNDP FLKQH
Sbjct: 201 TQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQH 260
Query: 906 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1085
NSGPK+KPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 261 NSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLG 320
Query: 1086 TTIYKEFEKRKML 1124
TTIYKEFEKRK+L
Sbjct: 321 TTIYKEFEKRKLL 333
>ref|XP_861351.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 17
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861323.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 16
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861298.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 15 [Canis
familiaris].
Length = 1091
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 792
>ref|XP_861266.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 14
[Canis familiaris].
Length = 1101
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 802
>ref|XP_861238.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 13 [Canis
familiaris].
Length = 1094
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 587 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 645
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 646 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 705
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 706 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 762
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 763 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 795
>ref|XP_861212.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 12
[Canis familiaris].
Length = 1111
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 604 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 662
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 663 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 722
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 723 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 779
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 780 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 812
>ref|XP_861179.1| PREDICTED: similar to ATP-citrate synthase (ATP-citrate
(pro-S-)-lyase) (Citrate cleavage enzyme) isoform 11
[Canis familiaris].
Length = 1097
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 590 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 648
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 649 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 708
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 709 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 765
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 766 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 798
>ref|XP_861149.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 10 [Canis
familiaris].
Length = 1087
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 580 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 638
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 639 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 698
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 699 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 755
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 756 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 788
>ref|XP_861122.1| PREDICTED: similar to ATP citrate lyase isoform 2 isoform 9 [Canis
familiaris].
Length = 1095
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 588 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 646
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 647 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 706
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 707 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 763
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 764 ETAVAKNQALKEAGVYVPPSFDELGEIIQSVYE 796
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,131,238
Number of extensions: 1155004
Number of successful extensions: 3461
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3439
Number of HSP's successfully gapped: 17
Length of query: 447
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 341
Effective length of database: 15,340,888
Effective search space: 5231242808
Effective search space used: 5231242808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003840.2| succinyl-CoA ligase [GDP-forming] subunit alpha... 462 e-130
Alignment gi|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens]. 52 2e-06
Alignment gi|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens]. 52 2e-06
>ref|NP_003840.2| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Homo sapiens].
Length = 346
Score = 462 bits (1190), Expect = e-130
Identities = 236/312 (75%), Positives = 240/312 (76%)
Frame = +3
Query: 189 QNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXXX 368
QNGIRHCSYTASR+HLYVDKNTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 35 QNGIRHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQT 94
Query: 369 XXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMVR 548
VFNTVKEAKEQTGATASVIYVPPPF +PLVVCITEGIPQQDMVR
Sbjct: 95 HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVR 154
Query: 549 VKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT 728
VKH+LLRQ KTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT
Sbjct: 155 VKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTT 214
Query: 729 QVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQHN 908
QVGLGQSLCVGIGGDPFNGTDF DCLEIFLND FLKQHN
Sbjct: 215 QVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHN 274
Query: 909 SGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLGT 1088
SGP SKPVVSFIAGLTAPPGRRMGH LQSAGVVVSMSPAQLGT
Sbjct: 275 SGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGT 334
Query: 1089 TIYKEFEKRKML 1124
TIYKEFEKRKML
Sbjct: 335 TIYKEFEKRKML 346
>ref|NP_942127.1| ATP-citrate synthase isoform 2 [Homo sapiens].
Length = 1091
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KP+V + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
>ref|NP_001087.2| ATP-citrate synthase isoform 1 [Homo sapiens].
Length = 1101
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KP+V + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,380,156
Number of extensions: 1144954
Number of successful extensions: 3536
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3531
Number of HSP's successfully gapped: 3
Length of query: 447
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 341
Effective length of database: 14,802,980
Effective search space: 5047816180
Effective search space used: 5047816180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_063932.2| succinyl-CoA ligase [GDP-forming] subunit alpha... 460 e-129
Alignment gi|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus]. 52 1e-06
Alignment gi|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus]. 52 1e-06
>ref|NP_063932.2| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial
precursor [Mus musculus].
Length = 346
Score = 460 bits (1183), Expect = e-129
Identities = 231/313 (73%), Positives = 241/313 (76%)
Frame = +3
Query: 186 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 365
QQNGIRH SYTASRKH+Y+DKNTK+ICQGFTGKQGTFHSQQALEYGT LV
Sbjct: 34 QQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQ 93
Query: 366 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 545
VFNTVKEAKE+TGATASVIYVPPPF +PLVVCITEGIPQQDMV
Sbjct: 94 KHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMV 153
Query: 546 RVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 725
RVKHRL RQG TRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT
Sbjct: 154 RVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213
Query: 726 TQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXXXXXXXXXXXXXXXXFLKQH 905
TQVGLGQSLC+GIGGDPFNGTDF DCLE+FLNDP FLK+H
Sbjct: 214 TQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEH 273
Query: 906 NSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXXXXXLQSAGVVVSMSPAQLG 1085
NSGPK+KPVVSFIAG+TAPPGRRMGH LQSAGVVVSMSPAQLG
Sbjct: 274 NSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLG 333
Query: 1086 TTIYKEFEKRKML 1124
TTIYKEFEKRKML
Sbjct: 334 TTIYKEFEKRKML 346
>ref|NP_001186225.1| ATP-citrate synthase isoform 1 [Mus musculus].
Length = 1101
Score = 52.0 bits (123), Expect = 1e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 594 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 713 IVVLGEIGGTEEYKICRGIKE---GRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 769
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 770 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802
>ref|NP_598798.1| ATP-citrate synthase isoform 2 [Mus musculus].
Length = 1091
Score = 52.0 bits (123), Expect = 1e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKADQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 760 ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,276,518
Number of extensions: 967541
Number of successful extensions: 2936
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2930
Number of HSP's successfully gapped: 3
Length of query: 447
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 342
Effective length of database: 12,463,779
Effective search space: 4262612418
Effective search space used: 4262612418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999574.1| succinyl-CoA ligase [GDP-forming] subunit alpha... 423 e-118
Alignment gi|NP_001098772.1| ATP citrate lyase [Sus scrofa]. 52 8e-07
>ref|NP_999574.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Sus
scrofa].
Length = 350
Score = 423 bits (1087), Expect = e-118
Identities = 230/332 (69%), Positives = 234/332 (70%), Gaps = 19/332 (5%)
Frame = +3
Query: 186 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVXXXXXXXXXX 365
QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLV
Sbjct: 21 QQNGIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK 80
Query: 366 XXXXXXVFNTVKEAKEQTGATASVIYVPPPFXXXXXXXXXXXXVPLVVCITEGIPQQDMV 545
VFNTVKEAKEQTGATASVIYVPPPF VPLVVCITEGIPQQDMV
Sbjct: 81 THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMV 140
Query: 546 RVKHRLLRQGKTRLIGPNCPGVIN-------------------PGECKIGIMPGHIHKKG 668
RVKHRLLRQGKTRLIGPNCPGVIN KI ++ G +
Sbjct: 141 RVKHRLLRQGKTRLIGPNCPGVINRFLRFAVYITSRVFTCTQQEEYRKIPLLFG--TRSI 198
Query: 669 RIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXXXXX 848
+GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDP
Sbjct: 199 HMGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIIL 258
Query: 849 XXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHXXXXXXXXXXXXXXX 1028
FLKQHNSGPKSKPVVSFIAGLTAPPGRRMGH
Sbjct: 259 IGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEK 318
Query: 1029 XXXLQSAGVVVSMSPAQLGTTIYKEFEKRKML 1124
LQSAGVVVSMSPAQLGTTIYKEFEKRKML
Sbjct: 319 ITALQSAGVVVSMSPAQLGTTIYKEFEKRKML 350
>ref|NP_001098772.1| ATP citrate lyase [Sus scrofa].
Length = 1076
Score = 52.0 bits (123), Expect = 8e-07
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 11/213 (5%)
Frame = +3
Query: 504 VVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIG--------IMPGHIH 659
+ I EGIP+ ++ + ++G T +IGP G I PG KIG I+ ++
Sbjct: 584 IAIIAEGIPEALTRKLIKKAEQKGVT-IIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 642
Query: 660 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPXXXX 839
+ G + VSRSG ++ E + ++ G V IGGD + G+ F D + + + P
Sbjct: 643 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 702
Query: 840 XXXXXXXXXXXXXXXXXFLKQHNSGPKSKPVVSFIAGLTA---PPGRRMGHXXXXXXXXX 1010
+K+ G +KPVV + G A + GH
Sbjct: 703 IVVLGEIGGTEEYKICRGIKE---GRITKPVVCWCIGTCATMFSSEVQFGHAGACANQAS 759
Query: 1011 XXXXXXXXXLQSAGVVVSMSPAQLGTTIYKEFE 1109
L+ AGV V S +LG I +E
Sbjct: 760 ETAIAKNQALKEAGVFVPRSFDELGEIIQSVYE 792
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,767,083
Number of extensions: 721202
Number of successful extensions: 2112
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 3
Length of query: 447
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,804,438
Effective search space: 3037531110
Effective search space used: 3037531110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007268
(1342 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 440 e-121
>Sscrofa_Chr03
|| Length = 144787322
Score = 440 bits (222), Expect = e-121
Identities = 242/246 (98%), Gaps = 2/246 (0%)
Strand = Plus / Plus
Query: 1098 aaggagtttgaaaagaggaagatgctatgaaagcaaaacgaatgagaaattccctaaacc 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174567 aaggagtttgaaaagaggaagatgctatgaaagcaaaacgaatgagaaattccctaaacc 63174626
Query: 1158 tgtggaatgaatcattgtagaattgtaagccctgccctgttgcttctgtcatcctctgtc 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63174627 tgtggaatgaatcattgtagaattgtaagccctgccctgttgcttctgtcatcctctgtc 63174686
Query: 1218 agcttgggcgcctgctgctggtctttgaggcaacaggaagccccaacaaggtttagcgtg 1277
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 63174687 agcttgggcgcctgctgctggtctttgaggcaacaggaagcccaaacaaggtttagcgtg 63174746
Query: 1278 tcctgctttgagatggtttcacctcaccgattaacagaacagccaat-aatctaccactt 1336
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct: 63174747 tcctgctttgagatggtttcacctcaccgaataacag-acagccaataaatctaccactt 63174805
Query: 1337 gatttg 1342
||||||
Sbjct: 63174806 gatttg 63174811
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 403 aggccaaagaacaaaccggagcgacggcatctgtcatttatgtccctcccccttttgctg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63158908 aggccaaagaacaaaccggagcgacggcatctgtcatttatgtccctcccccttttgctg 63158967
Query: 463 ctgctgccattaatgaagccatcgatgcagaagtgcccttggtcgtgtgcatcactgaag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63158968 ctgctgccattaatgaagccatcgatgcagaagtgcccttggtcgtgtgcatcactgaag 63159027
Query: 523 gcatcccgcagcaggacatggtgcgggtaaagcacaggctgctgcgccagggaaagacga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63159028 gcatcccgcagcaggacatggtgcgggtaaagcacaggctgctgcgccagggaaagacga 63159087
Query: 583 ggctgatcgggccaaactgccctggagtcatcaat 617
|||||||||||||||||||||||||||||||||||
Sbjct: 63159088 ggctgatcgggccaaactgccctggagtcatcaat 63159122
Score = 361 bits (182), Expect = 6e-97
Identities = 188/190 (98%)
Strand = Plus / Plus
Query: 912 ggtcccaagtccaagccggtggtgtccttcattgctggcttaactgcccctcctggcaga 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63171450 ggtcccaagtccaagccggtggtgtccttcattgctggcttaactgcccctcctggcaga 63171509
Query: 972 agaatgggtcacgcaggggcaattattgctggaggaaagggaggcgctaaagagaagatc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63171510 agaatgggtcacgcaggggcaattattgctggaggaaagggaggcgctaaagagaagatc 63171569
Query: 1032 actgccctgcagagtgcaggagttgtggtcagcatgtctcctgcacagctgggaaccacc 1091
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63171570 actgccctgcagagtgcaggagttgtggtcagcatgtctcctgcacagcctggaaccacc 63171629
Query: 1092 atctacaagg 1101
||||||||||
Sbjct: 63171630 atctacaagg 63171639
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 759 ggcattggaggtgatcctttcaatggaacagattttactgattgccttgaaatctttctg 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63168672 ggcattggaggtgatcctttcaatggaacagattttactgattgccttgaaatctttctg 63168731
Query: 819 aatgatccagccacagaaggcatcatattgattggtgaaattggtggtaatgcggaagag 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63168732 aatgatccagccacagaaggcatcatattgattggtgaaattggtggtaatgcggaagag 63168791
Query: 879 aatgctgcagaatttttgaagcaacataattcag 912
||||||||||||||||||||||||||||||||||
Sbjct: 63168792 aatgctgcagaatttttgaagcaacataattcag 63168825
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 285 cagggcacctttcatagccagcaggcgctggaatatggcaccaatctagttggaggaacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63154619 cagggcacctttcatagccagcaggcgctggaatatggcaccaatctagttggaggaacc 63154678
Query: 345 actccagggaaaggaggcaagacgcatctgggcctaccagtctttaatactgtgaaggag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63154679 actccagggaaaggaggcaagacgcatctgggcctaccagtctttaatactgtgaaggag 63154738
Query: 405 g 405
|
Sbjct: 63154739 g 63154739
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 184 tgcaacagaatggaattcggcattgttcctatacagcttcccggaagcatctctatgttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63149385 tgcaacagaatggaattcggcattgttcctatacagcttcccggaagcatctctatgttg 63149444
Query: 244 ataaaaatacgaaggttatttgccagggtttcactggtaagcagg 288
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63149445 ataaaaatacgaaggttatttgccagggtttcactggtaagcagg 63149489
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ataccggcaaatgctctggccaccctcttccttctcgcgcctcggcccctgcccgattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63138730 ataccggcaaatgctctggccaccctcttccttctcgcgcctcggcccctgcccgattcc 63138789
Query: 61 agggggcctaggagtgtcattggcggatgaccgcagccctcgt 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63138790 agggggcctaggagtgtcattggcggatgaccgcagccctcgt 63138832
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 675 ggtatcgtgtccagatctggcaccctgacttatgaagcagttcatcaaacaacacaagtt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63166964 ggtatcgtgtccagatctggcaccctgacttatgaagcagttcatcaaacaacacaagtt 63167023
Query: 735 ggcttggggcagtctttgtgtgttgg 760
||||||||||||||||||||||||||
Sbjct: 63167024 ggcttggggcagtctttgtgtgttgg 63167049
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 618 cctggagaatgcaaaattggcatcatgcctggccatattcacaagaaaggacgaattggt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63159272 cctggagaatgcaaaattggcatcatgcctggccatattcacaagaaaggacgaattggt 63159331
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,274,015
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 9
Length of query: 1342
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1321
Effective length of database: 2,808,413,156
Effective search space: 3709913779076
Effective search space used: 3709913779076
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)