Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029631.1| 60S ribosomal protein L17 [Bos taurus]. 345 2e-95
Alignment gi|XP_002688532.1| PREDICTED: ribosomal protein L17-like [Bos t... 338 2e-93
Alignment gi|XP_001250070.1| PREDICTED: ribosomal protein L17-like isofor... 338 2e-93
Alignment gi|XP_002696021.1| PREDICTED: ribosomal protein L17-like [Bos t... 335 2e-92
Alignment gi|XP_001257248.1| PREDICTED: ribosomal protein L17-like isofor... 335 2e-92
Alignment gi|XP_002697190.1| PREDICTED: ribosomal protein L17-like [Bos t... 330 1e-90
Alignment gi|XP_001250992.2| PREDICTED: ribosomal protein L17-like [Bos t... 330 1e-90
Alignment gi|XP_002691304.1| PREDICTED: ribosomal protein L17-like [Bos t... 316 1e-86
Alignment gi|XP_002700800.1| PREDICTED: ribosomal protein L17-like [Bos t... 316 1e-86
Alignment gi|XP_002688017.1| PREDICTED: ribosomal protein L17-like [Bos t... 308 4e-84
>ref|NP_001029631.1| 60S ribosomal protein L17 [Bos taurus].
Length = 184
Score = 345 bits (885), Expect = 2e-95
Identities = 169/184 (91%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_002688532.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 184
Score = 338 bits (868), Expect = 2e-93
Identities = 166/184 (90%), Positives = 167/184 (90%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVG CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGSCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
APKMR RTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 TAPKMRHRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_001250070.1| PREDICTED: ribosomal protein L17-like isoform 1 [Bos taurus].
Length = 184
Score = 338 bits (868), Expect = 2e-93
Identities = 166/184 (90%), Positives = 167/184 (90%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVG CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGSCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
APKMR RTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 TAPKMRHRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_002696021.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 184
Score = 335 bits (860), Expect = 2e-92
Identities = 164/184 (89%), Positives = 167/184 (90%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNGGVG+CAQAKQWGWTQGRWPKKSAEFLLHM +NAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 HRYNGGVGKCAQAKQWGWTQGRWPKKSAEFLLHMRRNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHG INPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGWINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_001257248.1| PREDICTED: ribosomal protein L17-like isoform 2 [Bos taurus].
Length = 184
Score = 335 bits (860), Expect = 2e-92
Identities = 164/184 (89%), Positives = 167/184 (90%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNGGVG+CAQAKQWGWTQGRWPKKSAEFLLHM +NAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 HRYNGGVGKCAQAKQWGWTQGRWPKKSAEFLLHMRRNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHG INPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGWINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_002697190.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 181
Score = 330 bits (845), Expect = 1e-90
Identities = 157/165 (95%), Positives = 161/165 (97%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNT ETAQAIK MHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTCETAQAIKRMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGG+GRCAQ KQWGWTQGRWP+KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGIGRCAQVKQWGWTQGRWPRKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAP MRRRTYRAHGRINPYMSSPCH+EMILTEKEQIVPKPEEEVA
Sbjct: 121 KAPTMRRRTYRAHGRINPYMSSPCHVEMILTEKEQIVPKPEEEVA 165
>ref|XP_001250992.2| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 181
Score = 330 bits (845), Expect = 1e-90
Identities = 157/165 (95%), Positives = 161/165 (97%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNT ETAQAIK MHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTCETAQAIKRMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGG+GRCAQ KQWGWTQGRWP+KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGIGRCAQVKQWGWTQGRWPRKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAP MRRRTYRAHGRINPYMSSPCH+EMILTEKEQIVPKPEEEVA
Sbjct: 121 KAPTMRRRTYRAHGRINPYMSSPCHVEMILTEKEQIVPKPEEEVA 165
>ref|XP_002691304.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 189
Score = 316 bits (810), Expect = 1e-86
Identities = 154/165 (93%), Positives = 157/165 (95%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MV YSLDPENPTKSCKSR SNLRVHFKNTRETAQAIKGMHIRKATKYLKD ++QCVPF
Sbjct: 1 MVHYSLDPENPTKSCKSRDSNLRVHFKNTRETAQAIKGMHIRKATKYLKD---KQQCVPF 57
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQG+WPKKSAEFLL MLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 58 RRYNGGVGRCAQAKQWGWTQGQWPKKSAEFLLRMLKNAESNAELKGLDVDSLVIEHIQVN 117
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAPKMRRRTYRAH RINPYMSSPCH EMILTEKEQIVPKPEEEVA
Sbjct: 118 KAPKMRRRTYRAHSRINPYMSSPCHTEMILTEKEQIVPKPEEEVA 162
>ref|XP_002700800.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 189
Score = 316 bits (810), Expect = 1e-86
Identities = 154/165 (93%), Positives = 157/165 (95%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MV YSLDPENPTKSCKSR SNLRVHFKNTRETAQAIKGMHIRKATKYLKD ++QCVPF
Sbjct: 1 MVHYSLDPENPTKSCKSRDSNLRVHFKNTRETAQAIKGMHIRKATKYLKD---KQQCVPF 57
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQG+WPKKSAEFLL MLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 58 RRYNGGVGRCAQAKQWGWTQGQWPKKSAEFLLRMLKNAESNAELKGLDVDSLVIEHIQVN 117
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAPKMRRRTYRAH RINPYMSSPCH EMILTEKEQIVPKPEEEVA
Sbjct: 118 KAPKMRRRTYRAHSRINPYMSSPCHTEMILTEKEQIVPKPEEEVA 162
>ref|XP_002688017.1| PREDICTED: ribosomal protein L17-like [Bos taurus].
Length = 189
Score = 308 bits (788), Expect = 4e-84
Identities = 151/165 (91%), Positives = 154/165 (93%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRG NLRVHFKNTRETAQAIKGMHIRKATKY KD TL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGLNLRVHFKNTRETAQAIKGMHIRKATKYPKDATLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNGGVG CAQAKQ GWTQGRW KKSAEFLL MLKNAE NAELKGLDVDSLVIEHIQVN
Sbjct: 61 CRYNGGVGGCAQAKQRGWTQGRWLKKSAEFLLRMLKNAERNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAP+MRRRTYRAHGRINPY SSPCHIE+IL EKEQIVPKPEEEVA
Sbjct: 121 KAPRMRRRTYRAHGRINPYRSSPCHIEIILPEKEQIVPKPEEEVA 165
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,487,088
Number of extensions: 632682
Number of successful extensions: 1373
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 12
Length of query: 251
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 151
Effective length of database: 14,372,574
Effective search space: 2170258674
Effective search space used: 2170258674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861376.1| PREDICTED: similar to 60S ribosomal protein L17... 347 9e-96
Alignment gi|XP_861349.1| PREDICTED: similar to 60S ribosomal protein L17... 347 9e-96
Alignment gi|XP_861322.1| PREDICTED: similar to 60S ribosomal protein L17... 347 9e-96
Alignment gi|XP_861296.1| PREDICTED: similar to 60S ribosomal protein L17... 347 9e-96
Alignment gi|XP_537346.1| PREDICTED: similar to 60S ribosomal protein L17... 347 9e-96
Alignment gi|XP_867799.1| PREDICTED: similar to 60S ribosomal protein L17... 343 7e-95
Alignment gi|XP_853691.1| PREDICTED: similar to 60S ribosomal protein L17... 343 7e-95
Alignment gi|XP_531729.2| PREDICTED: similar to 60S ribosomal protein L17... 343 7e-95
Alignment gi|XP_850345.1| PREDICTED: similar to 60S ribosomal protein L17... 343 1e-94
Alignment gi|XP_861236.1| PREDICTED: similar to 60S ribosomal protein L17... 343 1e-94
>ref|XP_861376.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 10
[Canis familiaris].
Length = 184
Score = 347 bits (889), Expect = 9e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_861349.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 9
[Canis familiaris].
Length = 184
Score = 347 bits (889), Expect = 9e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_861322.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 8
[Canis familiaris].
Length = 184
Score = 347 bits (889), Expect = 9e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_861296.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 7
[Canis familiaris].
Length = 184
Score = 347 bits (889), Expect = 9e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_537346.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 1
[Canis familiaris].
Length = 184
Score = 347 bits (889), Expect = 9e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_867799.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 4
[Canis familiaris].
Length = 184
Score = 343 bits (881), Expect = 7e-95
Identities = 168/184 (91%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPK++RRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKVQRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_853691.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 2
[Canis familiaris].
Length = 184
Score = 343 bits (881), Expect = 7e-95
Identities = 168/184 (91%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPK++RRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKVQRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_531729.2| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 1
[Canis familiaris].
Length = 184
Score = 343 bits (881), Expect = 7e-95
Identities = 168/184 (91%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLK+AESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKDAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKE+IVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEEIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_850345.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3
[Canis familiaris].
Length = 203
Score = 343 bits (880), Expect = 1e-94
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 165
>ref|XP_861236.1| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 6
[Canis familiaris].
Length = 169
Score = 343 bits (880), Expect = 1e-94
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,483,639
Number of extensions: 635406
Number of successful extensions: 1468
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 31
Length of query: 251
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 151
Effective length of database: 15,540,904
Effective search space: 2346676504
Effective search space used: 2346676504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186273.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_001186272.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_001186271.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_001186270.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_001186269.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_001030178.1| 60S ribosomal protein L17 isoform a [Homo sa... 347 8e-96
Alignment gi|NP_000976.1| 60S ribosomal protein L17 isoform a [Homo sapie... 347 8e-96
Alignment gi|NP_001186284.1| RPL17-C18orf32 protein isoform 1 [Homo sapie... 343 9e-95
Alignment gi|NP_001186274.1| 60S ribosomal protein L17 isoform b [Homo sa... 270 1e-72
Alignment gi|NP_001186285.1| RPL17-C18orf32 protein isoform 2 [Homo sapie... 266 1e-71
>ref|NP_001186273.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001186272.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001186271.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001186270.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001186269.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001030178.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_000976.1| 60S ribosomal protein L17 isoform a [Homo sapiens].
Length = 184
Score = 347 bits (889), Expect = 8e-96
Identities = 170/184 (92%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|NP_001186284.1| RPL17-C18orf32 protein isoform 1 [Homo sapiens].
Length = 228
Score = 343 bits (880), Expect = 9e-95
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 539
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA 165
>ref|NP_001186274.1| 60S ribosomal protein L17 isoform b [Homo sapiens].
Length = 146
Score = 270 bits (690), Expect = 1e-72
Identities = 132/146 (90%), Positives = 132/146 (90%)
Frame = +3
Query: 159 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA 338
MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA
Sbjct: 1 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA 60
Query: 339 ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 518
ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP
Sbjct: 61 ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 120
Query: 519 KPEEEVAXXXXXXXXXXXXXXLMARE 596
KPEEEVA LMARE
Sbjct: 121 KPEEEVAQKKKISQKKLKKQKLMARE 146
>ref|NP_001186285.1| RPL17-C18orf32 protein isoform 2 [Homo sapiens].
Length = 190
Score = 266 bits (681), Expect = 1e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +3
Query: 159 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA 338
MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA
Sbjct: 1 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNA 60
Query: 339 ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 518
ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP
Sbjct: 61 ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 120
Query: 519 KPEEEVA 539
KPEEEVA
Sbjct: 121 KPEEEVA 127
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,109,318
Number of extensions: 633736
Number of successful extensions: 1455
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1455
Number of HSP's successfully gapped: 10
Length of query: 251
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 151
Effective length of database: 15,000,764
Effective search space: 2265115364
Effective search space used: 2265115364
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086634.1| PREDICTED: 60S ribosomal protein L17-like [M... 353 1e-97
Alignment gi|XP_001481205.2| PREDICTED: 60S ribosomal protein L17-like is... 348 2e-96
Alignment gi|NP_001002239.2| 60S ribosomal protein L17 [Mus musculus]. 345 2e-95
Alignment gi|XP_003086934.1| PREDICTED: 60S ribosomal protein L17-like [M... 345 3e-95
Alignment gi|XP_001478961.1| PREDICTED: 60S ribosomal protein L17-like [M... 342 2e-94
Alignment gi|XP_001475553.2| PREDICTED: 60S ribosomal protein L17-like [M... 342 2e-94
Alignment gi|XP_003086020.1| PREDICTED: 60S ribosomal protein L17-like [M... 342 2e-94
Alignment gi|XP_003085548.1| PREDICTED: 60S ribosomal protein L17-like [M... 306 1e-83
Alignment gi|XP_899577.3| PREDICTED: 60S ribosomal protein L17-like [Mus ... 305 2e-83
Alignment gi|XP_922057.3| PREDICTED: 60S ribosomal protein L17-like [Mus ... 305 2e-83
>ref|XP_003086634.1| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 267
Score = 353 bits (905), Expect = 1e-97
Identities = 174/196 (88%), Positives = 176/196 (89%)
Frame = +3
Query: 9 SFPVSGLR*PLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYL 188
+ PVSG R P KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRK TKYL
Sbjct: 72 ALPVSGQRSPAKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKVTKYL 131
Query: 189 KDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLD 368
KDVTL+KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLD
Sbjct: 132 KDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLD 191
Query: 369 VDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXX 548
VDSLVIEHIQVNKA KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 192 VDSLVIEHIQVNKASKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKK 251
Query: 549 XXXXXXXXXXXLMARE 596
LMARE
Sbjct: 252 KISQKKLKKQKLMARE 267
>ref|XP_001481205.2| PREDICTED: 60S ribosomal protein L17-like isoform 2 [Mus musculus].
Length = 217
Score = 348 bits (893), Expect = 2e-96
Identities = 172/194 (88%), Positives = 173/194 (89%)
Frame = +3
Query: 15 PVSGLR*PLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKD 194
P G R P KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRK TKYLKD
Sbjct: 24 PPCGQRSPAKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKVTKYLKD 83
Query: 195 VTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVD 374
VTL+KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVD
Sbjct: 84 VTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVD 143
Query: 375 SLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXX 554
SLVIEHIQVNKA KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 144 SLVIEHIQVNKASKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKI 203
Query: 555 XXXXXXXXXLMARE 596
LMARE
Sbjct: 204 SQKKLKKQKLMARE 217
>ref|NP_001002239.2| 60S ribosomal protein L17 [Mus musculus].
Length = 184
Score = 345 bits (885), Expect = 2e-95
Identities = 169/184 (91%), Positives = 170/184 (92%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVA L
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_003086934.1| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 202
Score = 345 bits (884), Expect = 3e-95
Identities = 170/189 (89%), Positives = 171/189 (90%)
Frame = +3
Query: 30 R*PLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQK 209
R P KMVRYSLDPENPTKSCKSRGSNLRVHFKNTR TAQAIKGMHIRKATKYLKDVTL+K
Sbjct: 14 RSPAKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRGTAQAIKGMHIRKATKYLKDVTLKK 73
Query: 210 QCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIE 389
QCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIE
Sbjct: 74 QCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIE 133
Query: 390 HIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXX 569
HIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEE VA
Sbjct: 134 HIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEXVAQKKKISQKKL 193
Query: 570 XXXXLMARE 596
LMARE
Sbjct: 194 KKQKLMARE 202
>ref|XP_001478961.1| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 184
Score = 342 bits (877), Expect = 2e-94
Identities = 167/184 (90%), Positives = 169/184 (91%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRRTYRAHG+INPYMSSPCHIEMILTEKEQIVPKPEEE A L
Sbjct: 121 KAPKMRRRTYRAHGQINPYMSSPCHIEMILTEKEQIVPKPEEEAAQKKKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_001475553.2| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 276
Score = 342 bits (876), Expect = 2e-94
Identities = 169/190 (88%), Positives = 172/190 (90%)
Frame = +3
Query: 27 LR*PLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQ 206
LR P KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+
Sbjct: 87 LRSPAKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLK 146
Query: 207 KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI 386
KQCVPF RYNGGVG+CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI
Sbjct: 147 KQCVPFWRYNGGVGKCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI 206
Query: 387 EHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXX 566
EHIQVNKAPKMRRRTYRAHGRIN YMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 207 EHIQVNKAPKMRRRTYRAHGRINLYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKK 266
Query: 567 XXXXXLMARE 596
LMA+E
Sbjct: 267 LKKQKLMAQE 276
>ref|XP_003086020.1| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 259
Score = 342 bits (876), Expect = 2e-94
Identities = 169/190 (88%), Positives = 172/190 (90%)
Frame = +3
Query: 27 LR*PLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQ 206
LR P KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTL+
Sbjct: 70 LRSPAKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLK 129
Query: 207 KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI 386
KQCVPF RYNGGVG+CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI
Sbjct: 130 KQCVPFWRYNGGVGKCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI 189
Query: 387 EHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXX 566
EHIQVNKAPKMRRRTYRAHGRIN YMSSPCHIEMILTEKEQIVPKPEEEVA
Sbjct: 190 EHIQVNKAPKMRRRTYRAHGRINLYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKK 249
Query: 567 XXXXXLMARE 596
LMA+E
Sbjct: 250 LKKQKLMAQE 259
>ref|XP_003085548.1| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 183
Score = 306 bits (784), Expect = 1e-83
Identities = 154/184 (83%), Positives = 158/184 (85%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MV YSLDPENPTKS KSRGSNLRVHFKNT ETAQAIK MHI KATKYLKDVTL+KQCVPF
Sbjct: 1 MVCYSLDPENPTKSSKSRGSNLRVHFKNTWETAQAIKVMHICKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNG VGRC QAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLV EHIQVN
Sbjct: 61 WRYNG-VGRCTQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVTEHIQVN 119
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
KAPKMRRR YRAHGRINPYMSSPCH EMILTE+EQI+P+PEEE A L
Sbjct: 120 KAPKMRRRPYRAHGRINPYMSSPCHTEMILTEREQIIPEPEEEAAQKKRISQKELKKQKL 179
Query: 585 MARE 596
MARE
Sbjct: 180 MARE 183
>ref|XP_899577.3| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 184
Score = 305 bits (782), Expect = 2e-83
Identities = 150/184 (81%), Positives = 156/184 (84%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNL VHFKNTRE+AQAIK MHI KATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLHVHFKNTRESAQAIKVMHILKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNG GRCAQAK+WGWTQGRWPK++AE LLH LKNAESNAELKGL VDSLVIEHIQVN
Sbjct: 61 WRYNGRAGRCAQAKRWGWTQGRWPKRTAELLLHTLKNAESNAELKGLGVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
K PKMRRR YRAHGRINP MSSPCH EMILTEKEQI+PKPEEE A L
Sbjct: 121 KTPKMRRRPYRAHGRINPCMSSPCHTEMILTEKEQIIPKPEEEAAQKEKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
>ref|XP_922057.3| PREDICTED: 60S ribosomal protein L17-like [Mus musculus].
Length = 184
Score = 305 bits (782), Expect = 2e-83
Identities = 150/184 (81%), Positives = 156/184 (84%)
Frame = +3
Query: 45 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 224
MVRYSLDPENPTKSCKSRGSNL VHFKNTRE+AQAIK MHI KATKYLKDVTL+KQCVPF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLHVHFKNTRESAQAIKVMHILKATKYLKDVTLKKQCVPF 60
Query: 225 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 404
RYNG GRCAQAK+WGWTQGRWPK++AE LLH LKNAESNAELKGL VDSLVIEHIQVN
Sbjct: 61 WRYNGRAGRCAQAKRWGWTQGRWPKRTAELLLHTLKNAESNAELKGLGVDSLVIEHIQVN 120
Query: 405 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAXXXXXXXXXXXXXXL 584
K PKMRRR YRAHGRINP MSSPCH EMILTEKEQI+PKPEEE A L
Sbjct: 121 KTPKMRRRPYRAHGRINPCMSSPCHTEMILTEKEQIIPKPEEEAAQKEKISQKKLKKQKL 180
Query: 585 MARE 596
MARE
Sbjct: 181 MARE 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,282,646
Number of extensions: 542114
Number of successful extensions: 1211
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 10
Length of query: 251
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 152
Effective length of database: 12,643,995
Effective search space: 1921887240
Effective search space used: 1921887240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,549,366
Number of extensions: 428513
Number of successful extensions: 895
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 0
Length of query: 251
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 154
Effective length of database: 8,928,923
Effective search space: 1375054142
Effective search space used: 1375054142
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007270
(753 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 926 0.0
Sscrofa_Chr14 888 0.0
Sscrofa_Chr01 769 0.0
Sscrofa_Chr06 763 0.0
Sscrofa_ChrX 716 0.0
Sscrofa_Chr15 704 0.0
Sscrofa_Chr09 702 0.0
Sscrofa_Chr07 565 e-158
Sscrofa_Chr13 466 e-129
Sscrofa_Chr04 438 e-120
>Sscrofa_Chr05
|| Length = 111506441
Score = 926 bits (467), Expect = 0.0
Identities = 575/611 (94%)
Strand = Plus / Minus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
||||||| | |||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 69610674 cttttccgggaagcagcctgaggtgacctctaaaaatggtttgctattcacttgacccag 69610615
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct: 69610614 aaaaccccacaaaatcatgcaaatcaagaggttcaactgttcatgttcactttaagaaca 69610555
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
||||| |||||||||| ||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 69610554 ctcgtaaaactgcccaagccattaagggtatgcatatttgaaaagccaccgagcatctga 69610495
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggta 249
|||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||
Sbjct: 69610494 aagatgtcactctacagaagcaatgtgtgccattctgtcgttacagtggaggagttggta 69610435
Query: 250 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69610434 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 69610375
Query: 310 aatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatg 369
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69610374 actttttattgcatgtgcttaaaaatgcagagagtaatgctgaacttaagggcttagatg 69610315
Query: 370 tagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagga 429
||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||
Sbjct: 69610314 tagattctctggtcattgagcacctccaggtgaacaaagcccccaagatgcgacgcagga 69610255
Query: 430 cttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatga 489
|||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 69610254 cttacagagcacatggtcagatcaacacttacatgagttctccctgccacattaagatga 69610195
Query: 490 tccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaa 549
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 69610194 tccttactgaaaaagagcagattgttcctaagccagaagatgaggttgcgcagaagaaaa 69610135
Query: 550 agatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaa 609
|||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct: 69610134 agatatcccagaggaaactgcagaagcaaaaacttatgacccaggaataaatttcacaaa 69610075
Query: 610 aataaatgcaa 620
|||||||||||
Sbjct: 69610074 aataaatgcaa 69610064
>Sscrofa_Chr14
|| Length = 153851969
Score = 888 bits (448), Expect = 0.0
Identities = 571/612 (93%)
Strand = Plus / Minus
Query: 13 ttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaa 72
|||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct: 92380465 ttccagtaagtggcctgaggtgacctctaaaaatggctcactattcacttgacccagaaa 92380406
Query: 73 accccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacactc 132
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct: 92380405 accccacaaaatcatgcaaatgaagatgttcaaatcttcgtgttcactttaaaaacactc 92380346
Query: 133 gtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctgaaag 192
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct: 92380345 gtgaaactgcccaggccattaagggtatgcatatttgaaaagccaccaagtatccaaagg 92380286
Query: 193 acgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggt 252
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct: 92380285 acgtcactctacagaagcaatgtgtgccattccgttgttacaatgacagagttcataggt 92380226
Query: 253 gtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaat 312
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct: 92380225 atgcccaggccaaacagtggggctggacacagggtcagtggccccaaaagagtgatgaat 92380166
Query: 313 ttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtag 372
|||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
Sbjct: 92380165 ttttatcacacatgcttaaaattgcagaaagtaatgctaaacttaagggcttagatgtgg 92380106
Query: 373 attctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggactt 432
|||||||||||||||||||||||||||||||| |||||||||| ||| || | |||||||
Sbjct: 92380105 attctctggtcattgagcacatccaggtgaaccaagcccccaagatgtggtgcaggactt 92380046
Query: 433 acagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatgatcc 492
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 92380045 acagagctcatggtcagatcaacccttacatgagttctccctgccacattgagatgattc 92379986
Query: 493 ttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaaaga 552
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 92379985 ttactgaaaaagagcagactgttcctaagccagaagaggaggttgcaccaaagaaaaaga 92379926
Query: 553 tatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaaaat 612
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 92379925 tatcccagaagaaactgaagaagcaaaaacttatggccaaggaataaatttcacaaaaat 92379866
Query: 613 aaatgcaaataa 624
||||||||||||
Sbjct: 92379865 aaatgcaaataa 92379854
Score = 228 bits (115), Expect = 3e-57
Identities = 154/167 (92%)
Strand = Plus / Minus
Query: 451 tcaacccttacatgagttctccctgccacattgagatgatccttactgaaaaagagcaga 510
||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||
Sbjct: 16360174 tcaacacttacatgagttctccctgccacgatgagatgattcttacggaaaaagagaaga 16360115
Query: 511 ttgttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactga 570
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16360114 ctgttcctaagccagaaagggaggttgcacagaagaaaaagatatcccagaagaaactga 16360055
Query: 571 agaagcaaaaacttatggcccgggaataaatttcacaaaaataaatg 617
|||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 16360054 agaaacaaagaattatggcccggtaataaatttcacaaaaataaatg 16360008
Score = 147 bits (74), Expect = 1e-32
Identities = 252/307 (82%), Gaps = 12/307 (3%)
Strand = Plus / Plus
Query: 101 ttcaaatcttcgtgttcactttaagaacactcgtgaaactgcccaggccattaagggtat 160
||||| |||||| ||||||||||||| |||||||||||| | |||||||| ||||||||
Sbjct: 6870466 ttcaagtcttcgagttcactttaagagcactcgtgaaac--ctcaggccatcaagggtat 6870523
Query: 161 gcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaatgtgt--- 217
|||||| || |||||||| |||||||||| | |||| || | ||| | |||||
Sbjct: 6870524 gcatatccggaaagccactgagtatctgaatg----cactttatacaagtagtgtgttgt 6870579
Query: 218 gccattccgtcgttacaatggtggagtcggtaggtgtgcccaggccaaacagtggggctg 277
| |||| || ||||||| |||| || |||| ||||||||| ||||| ||||||
Sbjct: 6870580 gtggttccctcattacaatcaaggagctggcaggtatgcccaggctaaacat--gggctg 6870637
Query: 278 gacacagggtcggtggcccaaaaagagtgctgaatttttattgcacatgcttaaaaatgc 337
|||| |||||| | |||||||| |||||||||||||| | ||||||||||||||||||
Sbjct: 6870638 gacatagggtcagcagcccaaaaggagtgctgaattttgct-gcacatgcttaaaaatgc 6870696
Query: 338 agagagtaatgctgaacttaagggcttagatgtagattctctggtcattgagcacatcca 397
||||||| |||||||||| ||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 6870697 agagagtgatgctgaactcaagggctcagatgcggattttctggtcatcgagcacatcca 6870756
Query: 398 ggtgaac 404
|||||||
Sbjct: 6870757 ggtgaac 6870763
Score = 125 bits (63), Expect = 4e-26
Identities = 334/422 (79%), Gaps = 8/422 (1%)
Strand = Plus / Plus
Query: 153 aagggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaa 212
|||||||||||||| | |||||| ||||||||||| || || |||||| |||| |||||
Sbjct: 56532880 aagggtatgcatatccaaaaagctaccaagtatcttaaggatgtcactttacaaaagcag 56532939
Query: 213 tgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcccaggccaaacagtgg 272
||||| |||| ||| ||||||| |||||| | |||||| || ||||||| |||||||
Sbjct: 56532940 tgtgtctcattttgtcattacaatagtggagctgataggtgggctcaggccagacagtgg 56532999
Query: 273 ggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgcacatgcttaaa 332
||||||||||||| || ||| || ||| ||| | |||||||||| | ||||||| ||||
Sbjct: 56533000 ggctggacacaggctcagtgacctaaagagaatactgaatttttgtagcacatgtataaa 56533059
Query: 333 aatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtcattgagcac 392
| | |||||| |||| | ||| || | | ||| ||||||||||||| |||||||||||
Sbjct: 56533060 agtacagagaataatac-gaatttgaaagtttacctgtagattctctgatcattgagcac 56533118
Query: 393 atccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatggtcgaatc 452
|||| | |||| ||||| | | || | || | ||| |||| ||||||| | ||
Sbjct: 56533119 atccggatgaaaaaagcagctgagatac-----agaatttatagagttcatggttggatt 56533173
Query: 453 aacccttacatgagttctccctgccacattgagatgatccttactgaaaaagagcagatt 512
||||| | ||| | || |||||||||||||||||| ||| || |||||| |||||
Sbjct: 56533174 aaccc--atatgcatgctttctgccacattgagatgatacttggtgcaaaagaaaagatt 56533231
Query: 513 gttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaag 572
|||||||| ||||||| | | |||||||||| ||||||||||||||||| | |||||||
Sbjct: 56533232 gttcctaaaccagaagggaaaattgcacagaataaaaagatatcccagaaaagactgaag 56533291
Query: 573 aa 574
||
Sbjct: 56533292 aa 56533293
>Sscrofa_Chr01
|| Length = 315321322
Score = 769 bits (388), Expect = 0.0
Identities = 567/622 (91%), Gaps = 11/622 (1%)
Strand = Plus / Plus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
||||| |||||||| |||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 63646158 cttttgcagtaagcagcctgaggcgacctctaaaaatggtttgctattcacttgacccat 63646217
Query: 70 aaaa-ccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaac 128
|||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 63646218 aaaaaccccataaaatcatgagaatcaagaggttcaaatcttcatgttcactttaagaac 63646277
Query: 129 actcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctg 188
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 63646278 acccatgacactgcccaggccattaagggtatgcatattcgaaaagccaccaaggatctg 63646337
Query: 189 aaagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggt 248
|| || ||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct: 63646338 aaggatgtcactctacagaagcaatgtgtgccatttcgtcattacaatggtggagctggt 63646397
Query: 249 aggtgtgcccaggccaaacag---tggggctggacacagggtcggtggcccaaaaagagt 305
||||||||||| ||||| || ||||||| ||||||||||| ||| |||||||||||
Sbjct: 63646398 aggtgtgcccataccaaataggcctggggctagacacagggtcagtgacccaaaaagag- 63646456
Query: 306 gctgaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggctta 365
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 63646457 --tgaatttttattgcacatgctcaaaaatgcagagagtaatgctgaactgaagggcttg 63646514
Query: 366 gatgtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgt 425
|||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||| |||
Sbjct: 63646515 gatgtagagtctccggtcattcagcacatccaggtgaacaaagcccctaaaatgcagcgc 63646574
Query: 426 aggactt---acagagctcatggtcgaatcaacccttacatgagttctccctgccacatt 482
||||||| | ||||||| ||| | ||||| |||||| ||||||||||||||||||||
Sbjct: 63646575 aggacttataatagagctc-tggccagatcaatccttacctgagttctccctgccacatt 63646633
Query: 483 gagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacag 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 63646634 aagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcatag 63646693
Query: 543 aagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatt 602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63646694 aagaaaaagatatcccagaagaaactgaagaaacaaaaacttatggcccgggaataaatt 63646753
Query: 603 tcacaaaaataaatgcaaataa 624
||||||||||||||||||||||
Sbjct: 63646754 tcacaaaaataaatgcaaataa 63646775
Score = 676 bits (341), Expect = 0.0
Identities = 550/618 (88%), Gaps = 5/618 (0%)
Strand = Plus / Minus
Query: 5 gctttcttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcga 64
|||| |||||| ||||| ||| ||||||||||| |||||||| ||||||||||||| ||
Sbjct: 139816444 gcttccttttctggtaagtggcttgaggtgacctttaaaaatgcttcgctattcacttga 139816385
Query: 65 cccagaaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaa 124
||||||||||||| ||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 139816384 accagaaaacccca-aaaatcatgcaaatcaagaggttcaaatctttgtgttaattttaa 139816326
Query: 125 gaacactcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagta 184
|||||||| | ||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 139816325 gaacactcattaaactgcccaggccattaaaggtatgcatattctaaaagtcaccaagta 139816266
Query: 185 tctgaaagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagt 244
|||||| || |||||||||||||||||| |||| ||||||| || ||| |||||||||||
Sbjct: 139816265 tctgaaggatgtcactctacagaagcaacgtgtaccattccatcattataatggtggagt 139816206
Query: 245 cggtaggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagag 304
||||||| |||||||||||||||||||||||| ||||||| || || |||||||| |||
Sbjct: 139816205 tggtaggtatgcccaggccaaacagtggggctgaacacaggatcagtagcccaaaatgag 139816146
Query: 305 tgctgaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggctt 364
| |||||||||||||||||||||| ||||||||||||||| | | | |||||||||||||
Sbjct: 139816145 tactgaatttttattgcacatgctcaaaaatgcagagagtgaagtttaacttaagggctt 139816086
Query: 365 agatgtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcg 424
||||| ||||||| |||||| |||||||||||||||||||||||||| | |||| ||
Sbjct: 139816085 agatgcagattctttggtcagagagcacatccaggtgaacaaagccccaaggatgcagca 139816026
Query: 425 taggacttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattga 484
||||||| || || |||| | |||||||||||||| |||||| |||||||||||||
Sbjct: 139816025 caggactt----agttcttggttggatcaacccttacattagttcttcctgccacattga 139815970
Query: 485 gatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaa 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 139815969 gatgatccttactaaaaaagagcagattgttcctaagccagaagaggaggttgcatagaa 139815910
Query: 545 gaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttc 604
|||||||||||| |||||||||||||||| |||||| |||||| |||||||||| ||
Sbjct: 139815909 taaaaagatatcctagaagaaactgaagaaacaaaaatgcatggcctgggaataaatgtc 139815850
Query: 605 acaaaaataaatgcaaat 622
||||||||||||||||||
Sbjct: 139815849 acaaaaataaatgcaaat 139815832
Score = 626 bits (316), Expect = e-177
Identities = 466/515 (90%), Gaps = 2/515 (0%)
Strand = Plus / Plus
Query: 53 ctattcactcgacccagaaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcg 112
||||||||| |||| ||||||||| ||| |||||||| | |||||| |||||||||||||
Sbjct: 113933452 ctattcacttgacctagaaaaccctacacaatcatgccagtcaagaagttcaaatcttcg 113933511
Query: 113 tgttcactttaagaacactcgtgaaactgcccaggccattaagggtatgcatattcgaaa 172
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 113933512 tgttcacgttaagaacactcgtgaaactgcccaggccattaagggtatgcatatccaaaa 113933571
Query: 173 agccaccaagtatctgaaagacgtcactctacagaagcaatgtgtgccattccgtcgtta 232
||||| ||||||||| || || |||||| ||||||||||||||||||||||| ||| |||
Sbjct: 113933572 agccagcaagtatcttaaggatgtcactttacagaagcaatgtgtgccattcagtcatta 113933631
Query: 233 caatggtggagtcggtaggtgtgcccaggccaaacagtggggctggacacagggtcggtg 292
|| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||| ||
Sbjct: 113933632 cagtggtggagttggtaggtgtgcccaggtcaaaccttggggctggatccagggtcactg 113933691
Query: 293 gcccaaaaagagtgctgaatttttattgcacatgcttaaaaatgcagagagtaatgctga 352
|||| |||| |||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct: 113933692 gccccaaaaaagtgctgaatttttattgcacatgctcaaaaatg--tagagtaattctga 113933749
Query: 353 acttaagggcttagatgtagattctctggtcattgagcacatccaggtgaacaaagcccc 412
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113933750 atttaagggcttagatatagattctctggtcattgagcacatccaggtgaacaaagcccc 113933809
Query: 413 caaaatgcggcgtaggacttacagagctcatggtcgaatcaacccttacatgagttctcc 472
||| |||| || ||||||||||| ||||||| || || |||||||||||| |||||||
Sbjct: 113933810 caagatgcagctcaggacttacagcgctcatgatcagataaacccttacatgtgttctcc 113933869
Query: 473 ctgccacattgagatgatccttactgaaaaagagcagattgttcctaagccagaagagga 532
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 113933870 ctgccacattgagatgatccttactgaaaaagagcagtttgtttctaagccagaagaaga 113933929
Query: 533 ggttgcacagaagaaaaagatatcccagaagaaac 567
|||||||||||||||||||||| ||||||||||||
Sbjct: 113933930 ggttgcacagaagaaaaagatagcccagaagaaac 113933964
Score = 517 bits (261), Expect = e-144
Identities = 440/498 (88%), Gaps = 10/498 (2%)
Strand = Plus / Plus
Query: 136 aaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctgaaagacg 195
||||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |
Sbjct: 75022105 aaactgcccaggccattaagggtgtgcatatctgaaaagccaccaagtatctgaaggatg 75022164
Query: 196 tcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggtgtg 255
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 75022165 tcactctacagaagcaatgtgtgccattccgtcattacaatggtggagttggtaggtgtg 75022224
Query: 256 cccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttt 315
|||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||
Sbjct: 75022225 cccaggccaaacagtggggctggacatagggttggtggcccaaaaagagtacagaatttt 75022284
Query: 316 tattgcacatgcttaaaaatgcagag------agtaatgctgaacttaagggcttagatg 369
|||||||| ||| |||||||||| ||||||| |||||||||||| | ||||
Sbjct: 75022285 tattgcacgtgcccgcaaatgcagagagtaacagtaatgatgaacttaaggggctggatg 75022344
Query: 370 tagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagga 429
||||||||||||| |||||||||||||||||||||||||||||||||| | | | ||||
Sbjct: 75022345 tagattctctggtgtttgagcacatccaggtgaacaaagcccccaaaatactgtgcagga 75022404
Query: 430 cttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatga 489
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 75022405 cttagagagctcatggttccatcaacccttacatgagttctccctgccacactgagatga 75022464
Query: 490 tccttactgaaaaagagcagattgttcctaagccagaagagg---aggttgcacagaaga 546
||||||| |||||||| ||||||||||||||||||| ||| | |||||||||||||
Sbjct: 75022465 tccttaccaaaaaagag-tgattgttcctaagccagaacaggaacaagttgcacagaaga 75022523
Query: 547 aaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcac 606
||| ||||||||||| | |||||| |||||||||| |||| |||||||||||| |
Sbjct: 75022524 aaacgatatcccagatatcccagaagaaacaaaaacttacggcctgggaataaattttgc 75022583
Query: 607 aaaaataaatgcaaataa 624
||||||||||||||||||
Sbjct: 75022584 aaaaataaatgcaaataa 75022601
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 358 agggcttagatgtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108448485 agggcttagatgtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaa 108448426
Query: 418 tgcggcgtaggacttacagagctcatggtcgaatcaacccttacatgagttctccctgcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108448425 tgcggcgtaggacttacagagctcatggtcgaatcaacccttacatgagttctccctgcc 108448366
Query: 478 acattgagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108448365 acattgagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttg 108448306
Query: 538 cacagaagaaaaag 551
||||||||||||||
Sbjct: 108448305 cacagaagaaaaag 108448292
Score = 339 bits (171), Expect = 1e-90
Identities = 316/362 (87%), Gaps = 8/362 (2%)
Strand = Plus / Plus
Query: 241 gagtcggtaggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaa 300
|||| |||||||||| ||||| |||||||||||| |||||||||||| ||| | ||||
Sbjct: 70868863 gagttggtaggtgtgtccaggtcaaacagtggggttggacacagggttggtacctgaaaa 70868922
Query: 301 agagtgctgaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagg 360
||| ||| ||||||||| ||| |||| |||||| || | ||||||||||||||| ||
Sbjct: 70868923 agaatgcacaatttttatcacacgtgctaaaaaatacactgggtaatgctgaactta-gg 70868981
Query: 361 gcttagatgtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgc 420
||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct: 70868982 gcttagatgtagattctctggtcattgagtacatccaggtgaaaaaagcccc-aagatgc 70869040
Query: 421 ggcgtaggacttacagagctcatggtcgaatcaacccttacatgagttctccctgccaca 480
| |||||| | || ||||| ||||||||||||||||||||||||| |||||
Sbjct: 70869041 agaataggaccaa------tcctggtcagatcaacccttacatgagttctccctaccaca 70869094
Query: 481 ttgagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcac 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70869095 ttgagttgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcat 70869154
Query: 541 agaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaa 600
|||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||
Sbjct: 70869155 agaagaaaaagatatcccagaagaaactaaagaaacaaaaacttatggcacaggaataaa 70869214
Query: 601 tt 602
||
Sbjct: 70869215 tt 70869216
Score = 252 bits (127), Expect = 2e-64
Identities = 137/139 (98%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 124 agaacactcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108449694 agaacactcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagt 108449635
Query: 184 atctgaaagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggt-gga 242
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 108449634 atctgaaagacttcactctacagaagcaatgtgtgccattccgtcgttacaatggtagga 108449575
Query: 243 gtcggtaggtgtgcccagg 261
|||||||||||||||||||
Sbjct: 108449574 gtcggtaggtgtgcccagg 108449556
Score = 202 bits (102), Expect = 2e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 259 aggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttttat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108449330 aggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttttat 108449271
Query: 319 tgcacatgcttaaaaatgcagagagtaatgctgaacttaagg 360
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108449270 tgcacatgcttaaaaatgcagagagtaatgctgaacttaagg 108449229
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 654 cactcacaaaatgaaataagcttacataagcatgctgttttgaatcttctggtgccttgc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108447491 cactcacaaaatgaaataagcttacataagcatgctgttttgaatcttctggtgccttgc 108447432
Query: 714 ataaaatggaattagaactgtg 735
||||||||||||||||||||||
Sbjct: 108447431 ataaaatggaattagaactgtg 108447410
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 550 agatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaa 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108447608 agatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaa 108447549
Query: 610 aataaatgcaaataa 624
|||||||||||||||
Sbjct: 108447548 aataaatgcaaataa 108447534
Score = 131 bits (66), Expect = 6e-28
Identities = 101/110 (91%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 37 ctctaaaaatggttcgctattcactcgacccagaaaac-cccacaaaatcatgcaaatca 95
|||||||||||||| ||| |||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 70868718 ctctaaaaatggtttgcttttcacttgacccagaaaaatcccacaaaatcatgcagatca 70868777
Query: 96 agaggttcaaatcttcgtgttcactttaagaacactcgtgaaactgccca 145
|||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 70868778 -gaggttcaaatcttcgtgtttactttaagaacactcgtgaaactaccca 70868826
Score = 131 bits (66), Expect = 6e-28
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 67 cagaaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaaga 126
|||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 228844687 cagaaaaccctgccaaatcatgcaaatcaagaggttcaaatcttcaggttcactttaaga 228844746
Query: 127 acactcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatc 186
||| | |||||||| ||||||||| |||||||||| || ||||||||||||||| ||
Sbjct: 228844747 acaaccatgaaactggccaggccatggagggtatgcacatctgaaaagccaccaagtctc 228844806
Query: 187 tgaaagacgtcact 200
|||||| ||||||
Sbjct: 228844807 cgaaagatgtcact 228844820
Score = 109 bits (55), Expect = 2e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 30 aggtgacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaat 84
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108450618 aggtgacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaat 108450564
Score = 99.6 bits (50), Expect = 2e-18
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 522 ccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaagaagcaaaaa 581
|||||||| |||| |||||||||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 228845239 ccagaagaagaggctgcacagaagaaaaagatgtcccagaggaaactgatgaagcaaaaa 228845298
Query: 582 cttatggcccgggaataa 599
| |||||||| |||||||
Sbjct: 228845299 catatggcccaggaataa 228845316
Score = 97.6 bits (49), Expect = 8e-18
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 533 ggttgcacagaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggc 589
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 110280114 ggttgcacagaagaaaaagatatcccagaagaaactgaagaaacaaaaacttgtggc 110280170
Score = 83.8 bits (42), Expect = 1e-13
Identities = 127/153 (83%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 262 ccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgc 321
||||||||||||||| || ||||||||| ||||| ||||||||| ||| ||||| |||
Sbjct: 110279866 ccaaacagtggggctc-acccagggtcggcggccccaaaagagtggtgagtttttgctgc 110279924
Query: 322 acatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtagat--tctct 379
| |||||||||||| ||||||| ||| ||||||| | | | ||||| || |||||
Sbjct: 110279925 aaatgcttaaaaatacagagagaaatactgaactgagctgttctgatgtcaattctctct 110279984
Query: 380 ggtcattgagcacatccaggtgaacaaagcccc 412
||||||||||| |||||||| ||||||||||||
Sbjct: 110279985 ggtcattgagctcatccaggagaacaaagcccc 110280017
Score = 81.8 bits (41), Expect = 5e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 85 catgcaaatcaagaggttcaaatcttcgtgttcactttaag 125
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 108450472 catgcaaatcaagaggttcaaatcttcgtgttcactttaag 108450432
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 6 ctttcttttccagtaagcggcctgaggtga 35
||||||||||||||||||||||||||||||
Sbjct: 108451404 ctttcttttccagtaagcggcctgaggtga 108451375
>Sscrofa_Chr06
|| Length = 157765593
Score = 763 bits (385), Expect = 0.0
Identities = 557/615 (90%), Gaps = 17/615 (2%)
Strand = Plus / Minus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
||||||| |||||| ||||||||| ||||||||||||||||| || |||||| |||||||
Sbjct: 101845001 cttttccggtaagcagcctgaggtaacctctaaaaatggttcactgttcacttgacccag 101844942
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 101844941 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgtttgccttaagaaca 101844882
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 101844881 ctcgtgaaactgcccaggccactaaggctatgcatattcgaaaagccaccaagtatctga 101844822
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggta 249
| || |||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||
Sbjct: 101844821 aggatgtcactctacagaagcaatgtgtgcccttctgtcattacaatggtggagtgggta 101844762
Query: 250 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 309
|||||| || ||||||||| ||||||| |||||||||||||||||
Sbjct: 101844761 ggtgtgtcctggccaaaca-------------cagggtcagtggcccaaaaagagtg--- 101844718
Query: 310 aatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatg 369
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 101844717 aatttttaatgcacatgcttaaaaatgcagagtgtgatactgaacttaagggcttagatg 101844658
Query: 370 tagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagga 429
|||| ||||||||||||||||||||||||||||||| ||||||| |||| || ||||
Sbjct: 101844657 tagagcctctggtcattgagcacatccaggtgaacaat-cccccaagatgcagcacagga 101844599
Query: 430 cttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatga 489
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 101844598 cttacagagctcatggtcaaattaacccttacatgagttctccctgccacactgagatga 101844539
Query: 490 tccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaa 549
|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 101844538 tccttactgaaaaagaacagattgttcctaagccagaagaagaggctgcacagaagaaaa 101844479
Query: 550 agatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaa 609
|||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 101844478 agatataccagaagaaactgaagaaacaaaaacttatggcccaggaatatatttcacaaa 101844419
Query: 610 aataaatgcaaataa 624
|||||||||||||||
Sbjct: 101844418 aataaatgcaaataa 101844404
Score = 763 bits (385), Expect = 0.0
Identities = 557/615 (90%), Gaps = 17/615 (2%)
Strand = Plus / Plus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
||||||| |||||| ||||||||| ||||||||||||||||| || |||||| |||||||
Sbjct: 101957081 cttttccggtaagcagcctgaggtaacctctaaaaatggttcactgttcacttgacccag 101957140
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 101957141 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgtttgccttaagaaca 101957200
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 101957201 ctcgtgaaactgcccaggccactaaggctatgcatattcgaaaagccaccaagtatctga 101957260
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggta 249
| || |||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||
Sbjct: 101957261 aggatgtcactctacagaagcaatgtgtgcccttctgtcattacaatggtggagtgggta 101957320
Query: 250 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 309
|||||| || ||||||||| ||||||| |||||||||||||||||
Sbjct: 101957321 ggtgtgtcctggccaaaca-------------cagggtcagtggcccaaaaagagtg--- 101957364
Query: 310 aatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatg 369
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 101957365 aatttttaatgcacatgcttaaaaatgcagagtgtgatactgaacttaagggcttagatg 101957424
Query: 370 tagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagga 429
|||| ||||||||||||||||||||||||||||||| ||||||| |||| || ||||
Sbjct: 101957425 tagagcctctggtcattgagcacatccaggtgaacaat-cccccaagatgcagcacagga 101957483
Query: 430 cttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatga 489
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 101957484 cttacagagctcatggtcaaattaacccttacatgagttctccctgccacactgagatga 101957543
Query: 490 tccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaa 549
|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 101957544 tccttactgaaaaagaacagattgttcctaagccagaagaagaggctgcacagaagaaaa 101957603
Query: 550 agatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaa 609
|||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 101957604 agatataccagaagaaactgaagaaacaaaaacttatggcccaggaatatatttcacaaa 101957663
Query: 610 aataaatgcaaataa 624
|||||||||||||||
Sbjct: 101957664 aataaatgcaaataa 101957678
Score = 644 bits (325), Expect = 0.0
Identities = 479/528 (90%), Gaps = 3/528 (0%)
Strand = Plus / Minus
Query: 94 caagaggttcaaatcttcgtgttcactttaagaaca-ctcgtgaaactgcccaggccatt 152
||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 16741590 caagaggttcagatcttcacgttcactttaagaacaactcgtgaaactgcccaggccatt 16741531
Query: 153 aagggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaa 212
| ||||||||||||| |||||||||||||||||||||| || |||||| |||||||||
Sbjct: 16741530 aggggtatgcatatttgaaaagccaccaagtatctgaaggatgtcact--acagaagcag 16741473
Query: 213 tgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcccaggccaaacagtgg 272
|||||||||||| ||| ||||| |||||| || ||||||||||||||||||||||||| |
Sbjct: 16741472 tgtgtgccattctgtcattacagtggtggggttggtaggtgtgcccaggccaaacagtag 16741413
Query: 273 ggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgcacatgcttaaa 332
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16741412 ggctggacacagggttggtggcccaaaaagagtgctgaatttttattgcacatgctcgaa 16741353
Query: 333 aatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtcattgagcac 392
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 16741352 aatgcagagagtaatgctaaacttaagggcttagatgtatattctctggtcattgagcac 16741293
Query: 393 atccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatggtcgaatc 452
||||| || |||||||||||||| || ||| ||||||||||||||| ||||| |||
Sbjct: 16741292 atccaagtaaacaaagcccccaagatatagcgcaggacttacagagcttgtggtcagatc 16741233
Query: 453 aacccttacatgagttctccctgccacattgagatgatccttactgaaaaagagcagatt 512
|||||||||||||| ||||||| | || ||||||||||||| ||||||| |||||| ||
Sbjct: 16741232 aacccttacatgagctctccctacgccactgagatgatccttcctgaaaaggagcaggtt 16741173
Query: 513 gttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaag 572
||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct: 16741172 gttcctaagccagaagaggtggttgcgcagaagaaaaagatatcccagaataaactgaag 16741113
Query: 573 aagcaaaaacttatggcccgggaataaatttcacaaaaataaatgcaa 620
|| |||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 16741112 aaacaaaaatgtatgacctgggaataaatttcacaaaaataaatgcaa 16741065
Score = 107 bits (54), Expect = 9e-21
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 19 taagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaacccca 78
|||| ||||||||||||| |||||||||| || |||||| ||| ||||||||||||||||
Sbjct: 16741942 taaggggcctgaggtgacttctaaaaatgttttgctatttacttgacccagaaaacccca 16741883
Query: 79 caaaatcatgcaaatcaagaggttca 104
|||||||||| ||||||||||||||
Sbjct: 16741882 caaaatcatgtcaatcaagaggttca 16741857
Score = 63.9 bits (32), Expect = 1e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 25 gcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaaccc 76
||||||||||| |||| |||||| ||| ||||||||| ||||||||||||||
Sbjct: 87129268 gcctgaggtgatctctgaaaatgattcactattcacttgacccagaaaaccc 87129217
>Sscrofa_ChrX
|| Length = 144288218
Score = 716 bits (361), Expect = 0.0
Identities = 551/613 (89%), Gaps = 16/613 (2%)
Strand = Plus / Plus
Query: 12 tttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccagaa 71
||||| |||| ||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct: 36888775 tttccggtaaacggcctgaggtgacctctaaaaatggttcactcttcacttgacccagaa 36888834
Query: 72 aaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacact 131
||||||||||||||||||||| ||||||| |||||||||| | |||||||||| ||||||
Sbjct: 36888835 aaccccacaaaatcatgcaaagcaagagggtcaaatcttcatattcactttaacaacact 36888894
Query: 132 cgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctgaaa 191
| | ||||||||||| |||||||||||||||||||| || | ||||||
Sbjct: 36888895 c------------aagccattaagggaatgcatattcgaaaagccactaaatgtctgaag 36888942
Query: 192 gacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtagg 251
|| || ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 36888943 gatgttgctctacagaagcaatgtgtgccattccgtcgttgcaatggtagaggtggtagg 36889002
Query: 252 tgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaa 311
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 36889003 tgtgcccaggccaaacagtggggctggacacagggttagtggcccaaaaagagtgctgaa 36889062
Query: 312 tttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgta 371
|||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 36889063 tttttattgcacctgctgaaaaatgcagagagtaatgctgaacttaggggcttagatgta 36889122
Query: 372 gattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggact 431
||||||||| ||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 36889123 gattctctgatcattgagcacatccaggtgagcaaagcccccaagatgcagcgtaggact 36889182
Query: 432 tacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatgatc 491
|| ||| ||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 36889183 tagagacctcatggctggagcaacccttacatgagttctccctgccacactgagatgatc 36889242
Query: 492 cttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaaag 551
|||||||||||| || ||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 36889243 cttactgaaaaa-ag-agattgttcctaagccagaagaggagggtgaacagaag--aaag 36889298
Query: 552 atatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaaaa 611
||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 36889299 atatcccagaagaaattgaagaaacaaaaacttacggcccaggaataaatttcacaaaaa 36889358
Query: 612 taaatgcaaataa 624
|||||| ||||||
Sbjct: 36889359 taaatgaaaataa 36889371
Score = 470 bits (237), Expect = e-130
Identities = 438/505 (86%), Gaps = 10/505 (1%)
Strand = Plus / Plus
Query: 25 gcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaat 84
|||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||
Sbjct: 95077461 gcctgaggtgacctctaaaaatggttcgttattcacttgacccataaaaccctacaaaat 95077520
Query: 85 catgcaaatcaagaggttcaaatcttcgtgttcactttaagaacactcgtgaaactgccc 144
|||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 95077521 catgcaaatcaagaggttaaaatctttgtattcaccttaagaacactcgtgaaactgccc 95077580
Query: 145 aggccattaagggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactctac 204
|||||| ||| ||||||||||| ||| | ||||||||||| |||| || |||||| ||
Sbjct: 95077581 aggccactaatggtatgcatatctgaagatccaccaagtatttgaaggatgtcactttat 95077640
Query: 205 agaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcccaggcca 264
| ||| ||||||| |||||| | |||||||||||||||| |||||| ||||||||| |
Sbjct: 95077641 aaaagaaatgtgtaccattctgctgttacaatggtggagttggtaggcgtgcccagggaa 95077700
Query: 265 aacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgcaca 324
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 95077701 aagagtggggctgggcatagggttggtggcccaaaaagagtgctgaatttttattgcaca 95077760
Query: 325 tgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtca 384
| || ||||||| |||||||||||||||| |||||||| |||||||||| |||||| |||
Sbjct: 95077761 ttctcaaaaatgaagagagtaatgctgaa-ttaagggcatagatgtagagtctctgatca 95077819
Query: 385 ttgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatg 444
||||||| ||| ||||||||| |||||||| | || |||| ||||||| ||
Sbjct: 95077820 ttgagcatatcaaggtgaacagagccccca---------ggagcccttatagagctcgtg 95077870
Query: 445 gtcgaatcaacccttacatgagttctccctgccacattgagatgatccttactgaaaaag 504
|| ||||||||||||| ||||||| || ||||||||||||||||||||||| ||||
Sbjct: 95077871 atcagttcaacccttacatccgttctccttgtcacattgagatgatccttactgagaaag 95077930
Query: 505 agcagattgttcctaagccagaaga 529
||||||||||||||||| |||||||
Sbjct: 95077931 agcagattgttcctaagtcagaaga 95077955
Score = 325 bits (164), Expect = 2e-86
Identities = 273/312 (87%), Gaps = 18/312 (5%)
Strand = Plus / Plus
Query: 330 aaaaatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtcattgag 389
||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 17977092 aaaaatgcagaaagtaatgctgaacc-aagggcttagatgtagattccctggtcactgag 17977150
Query: 390 cacatccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatggtcga 449
||||||||| |||||||||||||||| | || | |||||||||| |||||||||||| |
Sbjct: 17977151 cacatccagatgaacaaagcccccaagacgcagtgtaggacttatagagctcatggttgt 17977210
Query: 450 atcaacccttacatgagttctccctgccacattgagatgatccttactgaaaaagagcag 509
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 17977211 atcaacccttacatgagttctccctaacacattgagatgacccttactgaaaaagagcag 17977270
Query: 510 attgttcctaagccagaagaggag-----------------gttgcacagaagaaaaaga 552
|||||||||||||||||||||||| | || |||||||||| |||
Sbjct: 17977271 attgttcctaagccagaagaggagggtgaacagaagaggaaggtgaacagaagaaagaga 17977330
Query: 553 tatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaaaat 612
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct: 17977331 tatcccagaagaaactgaagaaacaaaaacttatggccctggaataaatttcataaaaat 17977390
Query: 613 aaatgcaaataa 624
||||||||||||
Sbjct: 17977391 aaatgcaaataa 17977402
Score = 224 bits (113), Expect = 5e-56
Identities = 187/209 (89%), Gaps = 7/209 (3%)
Strand = Plus / Plus
Query: 133 gtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctgaaag 192
|||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 17976625 gtgaaactgcccaggccattaaggttatgcatattcgaa--gccacaaaatatctgaaag 17976682
Query: 193 acgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggt 252
| |||||| |||||||||||||||| |||||| || |||||||| ||||||| |||||||
Sbjct: 17976683 atgtcactgtacagaagcaatgtgtcccattctgtagttacaatagtggagttggtaggt 17976742
Query: 253 gtgcccaggccaaacagtggggctggacacagggtcggtggccc-aaaaagagtgctgaa 311
||| ||||| |||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 17976743 gtgtgcaggc----cagtggggctgggcacagggttggtggcccaaaaaagagtgctgaa 17976798
Query: 312 tttttattgcacatgcttaaaaatgcaga 340
||||||||||||||||| |||||||||||
Sbjct: 17976799 tttttattgcacatgctcaaaaatgcaga 17976827
Score = 61.9 bits (31), Expect = 5e-07
Identities = 68/78 (87%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 549 aagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatt--tcac 606
|||||||||| ||||||||||||||| | ||||||||| ||| |||||||||| ||
Sbjct: 95077952 aagatatcccggaagaaactgaagaaac-caaacttatgccccaggaataaattccgcaa 95078010
Query: 607 aaaaataaatgcaaataa 624
||||||||||||||||||
Sbjct: 95078011 aaaaataaatgcaaataa 95078028
>Sscrofa_Chr15
|| Length = 157681621
Score = 704 bits (355), Expect = 0.0
Identities = 553/616 (89%), Gaps = 6/616 (0%)
Strand = Plus / Plus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
|||||||| |||| | ||||||||||||||||||||||||| |||||||||| | |||||
Sbjct: 70605426 cttttccactaagtgacctgaggtgacctctaaaaatggtttgctattcacttggcccag 70605485
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
||||||| ||||||||||||||||||||||||||||||||| | ||||||| | ||||
Sbjct: 70605486 aaaacccaacaaaatcatgcaaatcaagaggttcaaatctttgccttcacttcagaaaca 70605545
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
|| |||||||| |||||||||||||||||| ||||||| ||||||||| ||||| | ||
Sbjct: 70605546 ttcatgaaactgtccaggccattaagggtatacatattcaaaaagccacaaagtagccga 70605605
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggta 249
| || ||||||||||||||| ||| ||||||||||| || ||| ||||| ||| ||||
Sbjct: 70605606 aggatgtcactctacagaagtaatatgtgccattccatcattatggtggtgaagttggta 70605665
Query: 250 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 309
| ||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 70605666 gctgtgcccaggccaaaaagcagggctgggcacagggtcggtgacccaaaaagagtgctg 70605725
Query: 310 aatttttattgcacatgct-taaaaatgcagagagtaatgctgaacttaagggcttagat 368
||||||| ||||||||||| |||||||| ||||||||| ||||| ||||| |||||||
Sbjct: 70605726 aatttttcttgcacatgctcaaaaaatgc--agagtaatgttgaacgtaaggacttagat 70605783
Query: 369 gtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagg 428
||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 70605784 gtagattctctagtcattgagcacatccaggtgaacaaagcccccaatatgtggcgcagg 70605843
Query: 429 acttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatg 488
||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||
Sbjct: 70605844 acttacagagctcatggtc---tgagcccttatatgagttctccctgccacattgagatg 70605900
Query: 489 atccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaa 548
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct: 70605901 atccttactgaaaaagagcagattgttcctaagccaggaaaggatgttgcacagaagaaa 70605960
Query: 549 aagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaa 608
|||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||
Sbjct: 70605961 aagatatcccagaagaaagtgaagaaacaaaaacttatggtccaggaataaatttcacaa 70606020
Query: 609 aaataaatgcaaataa 624
||||||||||||||||
Sbjct: 70606021 aaataaatgcaaataa 70606036
Score = 571 bits (288), Expect = e-160
Identities = 406/444 (91%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 18 gtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaacccc 77
||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||
Sbjct: 71878421 gtaagcggcctgaggtgacctctaaaaatggtttgctatttgcctgacacagaaaacccc 71878362
Query: 78 acaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacactcgtgaa 137
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 71878361 acaaaatcatgcaaatcaagaggttgaaatctttgtgttcactttaagaacactcgtgaa 71878302
Query: 138 actgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctgaaagacgtc 197
|||| | |||||| ||| ||||||||| | | ||||||||||||||||||||| || |||
Sbjct: 71878301 actgtc-aggccaataaaggtatgcatgtccaaaaagccaccaagtatctgaaggatgtc 71878243
Query: 198 actctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcc 257
| |||||||||||||||||||||||||| ||||| |||||||| ||| | ||||||||||
Sbjct: 71878242 attctacagaagcaatgtgtgccattccatcgttgcaatggtgaagttgataggtgtgcc 71878183
Query: 258 caggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaattttta 317
||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||||
Sbjct: 71878182 caggccaaacagtggggctggacacagggtcagtggcccaaaaggaatgctgactttttc 71878123
Query: 318 ttgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtagattct 377
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 71878122 ttgcacatgctcaaaaatgcagagagtaatgctgaatttaagggcttaaatgtagattct 71878063
Query: 378 ctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggacttacaga 437
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 71878062 ctggtcattgagcacatccaggtgaacaaagcccccaagatgcagtgtaggacttacaga 71878003
Query: 438 gctcatggtcgaatcaacccttac 461
||||| |||| ||||| ||||||
Sbjct: 71878002 gctcaaggtctgatcaagccttac 71877979
Score = 517 bits (261), Expect = e-144
Identities = 530/612 (86%), Gaps = 12/612 (1%)
Strand = Plus / Minus
Query: 18 gtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaacccc 77
||||| ||||||| ||||||||| ||||| || | |||||||| | |||||||||||||
Sbjct: 88774377 gtaagtggcctgaagtgacctctgaaaataatttggtattcacttggcccagaaaacccc 88774318
Query: 78 acaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacactcgtgaa 137
| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 88774317 aaagaatca--caaatcaagaggttcaaatcttcgtgtccactttaagaacactcatgaa 88774260
Query: 138 actgcccaggccattaagggtatgcatattcgaaaagccaccaa----gtatctgaaaga 193
|| |||||||||||||||||| |||| || ||||||||| ||| ||||||||| |
Sbjct: 88774259 accgcccaggccattaagggtgtgcacatctgaaaagccatcaatcaagtatctgaaggg 88774200
Query: 194 cgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggtg 253
|||||| || ||||||| |||||||||||| ||| |||||||| | |||| |||||| |
Sbjct: 88774199 tgtcactttagagaagcagtgtgtgccattctgtcattacaatg-tagagttggtagg-g 88774142
Query: 254 tgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatt 313
||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||
Sbjct: 88774141 tgcccaggccaaacagtggggctggacacagagttgatggcccaaaaagagttctgaatt 88774082
Query: 314 tttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtaga 373
|||| |||||| ||| |||||| | ||| |||||| ||||||| |||||||||||||||
Sbjct: 88774081 tttactgcacaggctcaaaaatacggagggtaatgaggaacttatgggcttagatgtaga 88774022
Query: 374 ttctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggactta 433
||||||| |||||||||| |||||||| |||||||||||||| || | | | ||||||||
Sbjct: 88774021 ttctctgatcattgagcatatccaggtaaacaaagcccccaagatacagggcaggactta 88773962
Query: 434 cagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatgatcct 493
|| |||||||| || ||||| || ||||||| ||| |||||| |||||||||||| |
Sbjct: 88773961 cacagctcatgatcagatcaa-tctgacatgagctcttcctgccgtattgagatgatcat 88773903
Query: 494 tactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaaagat 553
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 88773902 tactgaaaaagagcagactgttcct-acccagaagaggaggttgcacagaagaaaaagat 88773844
Query: 554 atcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcac--aaaaa 611
| |||||||| ||| ||||| ||||||||||||||| ||||||||||| ||| |||||
Sbjct: 88773843 aacccagaagtaaccaaagaaacaaaaacttatggcctgggaataaattccacaaaaaaa 88773784
Query: 612 taaatgcaaata 623
||||||||||||
Sbjct: 88773783 taaatgcaaata 88773772
Score = 327 bits (165), Expect = 5e-87
Identities = 479/577 (83%), Gaps = 15/577 (2%)
Strand = Plus / Plus
Query: 11 ttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccaga 70
||||||||||||| ||| |||||||||||||| |||| |||||||| |||| ||||||||
Sbjct: 149330990 ttttccagtaagcagcccgaggtgacctctaagaatgcttcgctatacacttgacccaga 149331049
Query: 71 aaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacac 130
|||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 149331050 aaaccc-acaaaatcctgcaaatcaagaggttcaaatctttgtggtcactttaagaacac 149331108
Query: 131 tcgtgaaactgcccaggccattaagggtatgcatattc--gaaaagccaccaagtatctg 188
|| |||||||| |||||| ||||||||||||||||| | ||| ||||||||| |
Sbjct: 149331109 tcctgaaactgtccaggctattaagggtatgcatatacctttaaaaaatccaagtatccg 149331168
Query: 189 aaagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggt 248
|| || ||||||||||||| || | ||||| ||| || | | || |||| | |
Sbjct: 149331169 aaggatgtcactctacagaggccacatgtgctgctccatcatgaaaa---cagagtggat 149331225
Query: 249 aggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgct 308
|||| |||||||||| | |||||||||||||| ||||||||||||||| |||||| |||
Sbjct: 149331226 aggtatgcccaggcc-agcagtggggctggacgcagggtcggtggcccccaaagagggct 149331284
Query: 309 gaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagat 368
|||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct: 149331285 aaatttttattgcacatgc-tcaaaatgcagagaggaatgctgaacttaagggcttagca 149331343
Query: 369 gtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagg 428
|| ||| |||||||||| | ||| |||||||| ||||||||||||| ||| | | |||
Sbjct: 149331344 gtggatcctctggtcatggcgcatatccaggtaaacaaagcccccagggtgcagtgaagg 149331403
Query: 429 acttacagagctcatgg------tcgaatcaacccttacatgagttctccctgccacatt 482
||||||||||| || || || |||| | ||| | |||| |||| ||| || |
Sbjct: 149331404 acttacagagcgcacggtcaccatcagatcaggctttatgtaagttttcccagccccact 149331463
Query: 483 gagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacag 542
|||| | |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 149331464 gagacg-tccttactgaaaaagagcagcttgttcctaagccagaagaggacagtgcacag 149331522
Query: 543 aagaaaaagatatcccagaagaaactgaagaagcaaa 579
|||| |||||||||||||| ||||||| |||| ||||
Sbjct: 149331523 aagagaaagatatcccagaggaaactggagaaacaaa 149331559
Score = 145 bits (73), Expect = 4e-32
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 466 gttctccctgccacattgagatgatccttactgaaaaagagcagattgttcctaagccag 525
||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||
Sbjct: 71877874 gttctccctgccacattgagacgatccacactgaaaaagagcagattattcctaaatcag 71877815
Query: 526 aagaggaggttgcacagaagaaaaagatatcccagaagaaactgaagaa 574
|||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71877814 aagaataggttgcacagaagaaaaagatatcccagaagaaactgtagaa 71877766
>Sscrofa_Chr09
|| Length = 153670197
Score = 702 bits (354), Expect = 0.0
Identities = 552/614 (89%), Gaps = 3/614 (0%)
Strand = Plus / Minus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
|||||| |||||| |||||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct: 91772403 cttttctagtaagtggcctgaggtgacctctaaaaatggtccactattcacttgactcag 91772344
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
||||||||||| | |||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct: 91772343 aaaaccccacacagtcatgcaaatca-gagattcaaatcttcgtgttcacattaagaagg 91772285
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
|| ||| |||||||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct: 91772284 cttatgacactgcccaggccgttaaggatatgcatatttgaaaagccaccaagtattgga 91772225
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcggta 249
| || |||||| || |||||||||||| |||||||| | |||||| ||||||| ||||
Sbjct: 91772224 aggatgtcactatatagaagcaatgtgcgccattccatttttacaacagtggagttggta 91772165
Query: 250 ggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgctg 309
||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||
Sbjct: 91772164 ggtgtgcccaggccaaacaatggggctggacagaaggtcagtggcccaaaaagagtgctg 91772105
Query: 310 aatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagatg 369
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 91772104 gatttttattgcacatgctcaaaaatgcagagaggaatgctgaacttaagggcttagatg 91772045
Query: 370 tagattctctggtcattgagcacatccaggtgaacaaagcccccaaaatgcggcgtagga 429
|| ||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||
Sbjct: 91772044 tatattctctggtcattgagcatatccaggtgaacaaagcccccaagatgcagtgtagga 91771985
Query: 430 cttacagagctcatggtcgaatcaacccttacatgagttctccctgccacattgagatga 489
|||||||||||||| ||| ||||||||||| ||||||| |||||||||||| | |||||
Sbjct: 91771984 cttacagagctcatagtcagatcaacccttatatgagttgtccctgccacatggggatga 91771925
Query: 490 tccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaaaa 549
||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 91771924 tccttactgaaaaagag-aaattgttcctaagccagaagaagaggttacacagaagaaaa 91771866
Query: 550 agatatcccagaagaaactg-aagaagcaaaaacttatggcccgggaataaatttcacaa 608
||||||||||| |||||||| ||||| ||||||| ||||||| ||||| ||||||||||
Sbjct: 91771865 agatatcccagcagaaactgaaagaaacaaaaacgtatggcctaggaatgaatttcacaa 91771806
Query: 609 aaataaatgcaaat 622
||||||||||||||
Sbjct: 91771805 aaataaatgcaaat 91771792
Score = 587 bits (296), Expect = e-165
Identities = 503/568 (88%), Gaps = 3/568 (0%)
Strand = Plus / Plus
Query: 25 gcctgaggtgacctct-aaaaatggttcgctattcactcgacccagaaaaccccacaaaa 83
||||||| ||||||| ||||||||||| || ||||| ||||||| ||| |||||||||
Sbjct: 97007638 gcctgagatgacctcccaaaaatggttcaatagtcacttgacccagcaaatcccacaaaa 97007697
Query: 84 tcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaacactcgtgaaactgcc 143
|||||||||| ||||||||||||| || || |||||||||||||| || ||||||||| |
Sbjct: 97007698 tcatgcaaattaagaggttcaaatttttgtattcactttaagaactcttgtgaaactgtc 97007757
Query: 144 caggccattaagggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactcta 203
|||||||||||||| |||||||| |||||| ||||||||||||||| || |||||| ||
Sbjct: 97007758 caggccattaagggcatgcatatctgaaaagtcaccaagtatctgaaggatgtcact-ta 97007816
Query: 204 cagaagcaatgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcccaggcc 263
||||||| |||| ||||||| |||| |||||||| |||||| |||||||| |||||||||
Sbjct: 97007817 cagaagccatgtatgccatttcgtctttacaatgctggagttggtaggtgagcccaggcc 97007876
Query: 264 aaacagtggggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgcac 323
||||| |||||||||||||||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 97007877 aaacaatggggctggacacagggttggtggtccaaaagcagtgtcgaatttttattgcac 97007936
Query: 324 atgcttaaaaatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtc 383
||||| ||||||||||| ||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 97007937 atgctcaaaaatgcagacagtaatgctaaatttaagggcttaggtgtagattctctggtc 97007996
Query: 384 attgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcat 443
| | ||||||||||||| ||||||| ||| || |||| | | |||||||| ||||||||
Sbjct: 97007997 actcagcacatccaggtaaacaaagtccctaagatgcagtgcaggacttagagagctcag 97008056
Query: 444 ggtcgaatcaacccttacatgagttctccctgccacattgagatgatccttactgaaaaa 503
|||| || |||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 97008057 agtcggatgaacccttagatgagttctccctactacattgagatgatccttactgaaaaa 97008116
Query: 504 gagcagattgttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaag 563
||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 97008117 gagca-attgtttctaagccagaagaggaggttgcacagaagaaaaagatattccagaaa 97008175
Query: 564 aaactgaagaagcaaaaacttatggccc 591
||| ||||||| ||||||||||||||||
Sbjct: 97008176 aaaatgaagaaacaaaaacttatggccc 97008203
>Sscrofa_Chr07
|| Length = 134764511
Score = 565 bits (285), Expect = e-158
Identities = 548/626 (87%), Gaps = 16/626 (2%)
Strand = Plus / Minus
Query: 10 cttttccagtaagcggcctgaggtgacctctaaaaatggttcgctattcactcgacccag 69
||||||| |||||| ||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 37724688 cttttccggtaagcagcctgaggtgatctctaaaaatggttcgctatgtacaggacccag 37724629
Query: 70 aaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcgtgttcactttaagaaca 129
|||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct: 37724628 aaaaccccacaagatcatgcaaatcaagaggttcaaatcttcatgttcacctgaagaacc 37724569
Query: 130 ctcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagtatctga 189
||| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 37724568 ctcatgaaactgcccaggccattaagagtatgcgtattcgaaaagccaccaagcatctga 37724509
Query: 190 aagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagtcgg-t 248
| || ||| |||||| ||||||| |||||||| ||| |||| ||| ||| ||||| || |
Sbjct: 37724508 aggatgtccctctacggaagcaaagtgtgccagtccatcgtaacagtggcggagttggtt 37724449
Query: 249 aggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagagtgct 308
| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 37724448 atgtg-ccccaggccaaacagtggggctggactcagggttggtggcccaaaaagagtgct 37724390
Query: 309 gaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggcttagat 368
| |||||||||||| |||| ||||||||||||||||||| | || |||||||| | |||
Sbjct: 37724389 g-atttttattgcatgtgctcaaaaatgcagagagtaatgttaaatttaagggcct-gat 37724332
Query: 369 gtagattctctggtcattgagcacatccaggtgaacaaagcccccaaaat--gcggcgta 426
| ||||||| ||||||||||||||||||||||||||||||| || || || | ||| |
Sbjct: 37724331 gcagattctgtggtcattgagcacatccaggtgaacaaagctcctaagatacacagcgaa 37724272
Query: 427 gga-cttacagagctcat------ggtcgaatcaacccttacatgagttctccctgccac 479
||| || ||||| ||||| |||| ||||||||||||||||| || ||||| | |
Sbjct: 37724271 ggacctaacagacctcatggtcacggtcagatcaacccttacatgagctccccctgtccc 37724212
Query: 480 attgagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgca 539
| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 37724211 actgagatgatcccgactgaaaaagagcacattgttcctaagccagaagaggaggttgca 37724152
Query: 540 -cagaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaata 598
|||||||||||| ||||||||||||||| ||||| |||||| |||||||| |||||||
Sbjct: 37724151 ccagaagaaaaag--atcccagaagaaactaaagaaacaaaaatttatggccagggaata 37724094
Query: 599 aatttcacaaaaataaatgcaaataa 624
||||||||||||||||||||||||||
Sbjct: 37724093 aatttcacaaaaataaatgcaaataa 37724068
Score = 212 bits (107), Expect = 2e-52
Identities = 217/252 (86%), Gaps = 10/252 (3%)
Strand = Plus / Plus
Query: 383 cattgagcacatccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctca 442
|||||||||||| |||||||||||||| |||| |||| || ||||| || |||||||
Sbjct: 45150431 cattgagcacatacaggtgaacaaagctgccaagatgcagcacaggacagactgagctca 45150490
Query: 443 tggtc------gaatcaacccttacatgagttctccctgccacattgagatgatccttac 496
||||| | ||||| ||| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 45150491 tggtcatggttggatcaatcctgacatgagctctccctgccacattgagatgattcttac 45150550
Query: 497 tgaaaaagagcaga---ttgttcctaagccagaagaggaggttgcacagaag-aaaaaga 552
|||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 45150551 tgaaaaagagcagactgttgttcctaagccaaaagaggaggttgtacagaagaaaaaagg 45150610
Query: 553 tatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcacaaaaat 612
|| ||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||
Sbjct: 45150611 taccccagaagaaactgaagaaacaaaaacttatggcctgggaatacattttgaaaaaat 45150670
Query: 613 aaatgcaaataa 624
||||||||||||
Sbjct: 45150671 aaatgcaaataa 45150682
Score = 190 bits (96), Expect = 8e-46
Identities = 227/271 (83%), Gaps = 6/271 (2%)
Strand = Plus / Minus
Query: 347 tgctgaacttaagggcttagatgtagattctctggtcattgagcacatccaggtgaacaa 406
|||||||||| |||||| ||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 42096191 tgctgaacttcagggctgagatgtagattctgtggtcatggagcacatccgggtgaacaa 42096132
Query: 407 agcccccaaaatgcggcgtaggacttacagagctcatggtcga------atcaaccctta 460
|||||||| | || || |||||||||||||||||||||| |||||||||||
Sbjct: 42096131 agcccccaggaagcagcccaggacttacagagctcatggtcaccgtcagatcaaccctta 42096072
Query: 461 catgagttctccctgccacattgagatgatccttactgaaaaagagcagattgttcctaa 520
| |||||||||||||||||||||||||| |||| |||| || || ||| ||||||||||
Sbjct: 42096071 cgtgagttctccctgccacattgagatgttcctcactggaacaggacagtttgttcctaa 42096012
Query: 521 gccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaagaagcaaaa 580
||||||||||||||||||||| |||||||||| | | |||| || |||| |||||
Sbjct: 42096011 atcagaagaggaggttgcacagagaaaaaagatattctgggagaagatgcagaaacaaaa 42095952
Query: 581 acttatggcccgggaataaatttcacaaaaa 611
||| ||| ||| |||||||||| | ||||||
Sbjct: 42095951 actcatgacccaggaataaattccgcaaaaa 42095921
Score = 105 bits (53), Expect = 3e-20
Identities = 93/105 (88%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 96 agaggttcaaatcttcgtgttcactttaagaacactcgtgaaactgcccaggccattaag 155
||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 42096723 agaggtttgaatctttgagttcactttaaggacactcgtgaaactgcccaggcca-taag 42096665
Query: 156 ggtatgcatattcgaaaagccaccaagtatctgaaagacgtcact 200
|||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct: 42096664 ggtaggcatatctgaaaagctgccaagtatctgaaagacatcact 42096620
>Sscrofa_Chr13
|| Length = 218635234
Score = 466 bits (235), Expect = e-129
Identities = 467/534 (87%), Gaps = 14/534 (2%)
Strand = Plus / Plus
Query: 95 aagaggttcaaatcttcgtgttcactttaagaacactcgtgaaactgcccaggccattaa 154
||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct: 143588875 aagaggttcaaatcttcatgttcactttaagaacacttgtaaacctgcccaggccattag 143588934
Query: 155 gggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaatg 214
| ||||||||| | |||| |||||||||||||||| | || ||| || ||||| ||||
Sbjct: 143588935 gcgtatgcatacccaaaaatccaccaagtatctgaagggtgtaactttagagaagaaatg 143588994
Query: 215 tgtgccattccgtcgttacaatggt-ggagtcggtaggtgtgcccaggccaaacagtggg 273
|||||||||| ||| |||||||||| ||| | | ||||||||||||| ||||||||||||
Sbjct: 143588995 tgtgccattctgtcattacaatggtaggactag-taggtgtgcccagaccaaacagtggg 143589053
Query: 274 gctggacacagggtcggtg-gcccaaaaagagtgctgaatttttattgcacatgcttaaa 332
||||||||||| | || |||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 143589054 gctggacacagacttgggaagcccaaaaagagggctga-tttttattgcacatgctcaaa 143589112
Query: 333 aatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtcattgagcac 392
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 143589113 aatggagagagtaatgctgaacttaagggcttagaggtagattctctggtcattgagcac 143589172
Query: 393 atccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatggtcgaatc 452
|||||||||||| |||||||||| |||| | | ||||||||||||||||| ||| |||
Sbjct: 143589173 atccaggtgaac-aagcccccaagatgcagtgcaggacttacagagctcacagtcagatc 143589231
Query: 453 aacccttacatgagttctccctgccacattgagatgatcctt-actgaaaaagagcagat 511
||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 143589232 aacccttacgtgagctctccctgccacattgagatgatacttaactgaaaaagagcagac 143589291
Query: 512 tgttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaa 571
||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||
Sbjct: 143589292 tgttcctaagccagaagagaaggttagacagaag---aagatatcccagaagaaactcaa 143589348
Query: 572 gaagcaaaaacttatggcccgggaataaatttca-caaaaataaatgcaaataa 624
||||||| || |||| ||||||||||| || |||||| |||| |||||||
Sbjct: 143589349 ----caaaaacatacggcctgggaataaattccaccaaaaaaaaatccaaataa 143589398
Score = 319 bits (161), Expect = 1e-84
Identities = 486/584 (83%), Gaps = 9/584 (1%)
Strand = Plus / Minus
Query: 46 tggttcgctattcactcgacccagaaaaccccacaaaatcatgcaaatcaagaggttcaa 105
|||||| ||||| ||| |||| ||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 148329863 tggttcactatttacttgaccgagaaaactccacaaa-tcatgcaaatctagaggttcaa 148329805
Query: 106 atcttcgtgttcactttaagaacactcgtgaaactgcccaggccattaagggtatgcata 165
|| || ||||||| |||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 148329804 atttttatgttcaccttaagaacacctgtgaaactgcccgagccattaagggtatacata 148329745
Query: 166 ttcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaatgtgtgccattcc 225
||||||||||||| |||||||| || |||||| || | |||||||||||||||||||
Sbjct: 148329744 gctgaaaagccaccaaatatctgaaggatgtcactttatataagcaatgtgtgccattcc 148329685
Query: 226 gtcgttacaatggtggagtcggtaggtgtgcccaggccaaacagtggggctggacacagg 285
| |||||| |||||||| ||||| |||| ||||| |||||| ||||| | | || |
Sbjct: 148329684 attgttacactggtggagctggtagatgtgtccaggtgaaacaggggggcggcatgcaag 148329625
Query: 286 gtcggtggcccaaaaagagtgctgaatttttattgcacatgct-taaaaatgcagagagt 344
|| | |||||||||||||||||||||||||| ||||||||| ||||||| |||| |
Sbjct: 148329624 gttgacggcccaaaaagagtgctgaatttttacagcacatgctcaaaaaatgaagaggat 148329565
Query: 345 aatgctgaacttaagggc--ttagatgtagattctctggtcattgagcacatccaggtga 402
|||| ||||||||||||| |||||| |||| | ||||||| | |||||||||||||||
Sbjct: 148329564 aatgttgaacttaagggctattagatacagataccctggtcactaagcacatccaggtga 148329505
Query: 403 acaaagcccccaaaatgcggcgtaggacttacagagctcatggtcgaatcaacccttaca 462
||| | |||||| || | | ||||||||||||||||| | | |||||||| ||||
Sbjct: 148329504 acagaacccccagcttgtgacacaggacttacagagctcacgagtggatcaacccataca 148329445
Query: 463 tgagttctccctgccacattgagatgatccttactgaaaaagagcagattgttcctaagc 522
|||| |||||||||||| ||| ||||| |||||| ||||||||||| ||||| ||| |
Sbjct: 148329444 tgagcactccctgccacactga-atgattcttact-aaaaagagcagcctgttcttaa-c 148329388
Query: 523 cagaagaggaggttgcacagaagaaaaagatatcccag-aagaaactgaagaagcaaaaa 581
|||||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||
Sbjct: 148329387 cagaagaggaggctgcacagaagaaaaagatatcacagaaaaaaactgaagaaataaaaa 148329328
Query: 582 cttatggcccgggaataaatttcac-aaaaataaatgcaaataa 624
|| | |||| |||||||||| | ||||||||||||||||||
Sbjct: 148329327 ctcacagcccaagaataaatttagcaaaaaataaatgcaaataa 148329284
Score = 274 bits (138), Expect = 7e-71
Identities = 409/499 (81%), Gaps = 9/499 (1%)
Strand = Plus / Minus
Query: 108 cttcgtgttcactttaagaacactcgtgaaactgcccaggccattaagggtatgcatatt 167
||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 43834740 cttcgggttcactttaagaacactcgtgaagctgcccaggccattaagggaatgtatatc 43834681
Query: 168 cgaaaagccaccaagtatctgaaagacgtcactctacagaagcaatgtgtgccattccgt 227
| ||| ||||||||| |||||| || |||||| ||||||||||| |||||||||| ||
Sbjct: 43834680 cccaaatccaccaagtgtctgaaggatgtcactttacagaagcaacatgtgccattctgt 43834621
Query: 228 cgttacaatggtggagtcggtaggtgtgcccaggccaaacagtggggctggacacagggt 287
| || | |||||||| ||||||||| |||||| ||| ||| || || |||| ||||||
Sbjct: 43834620 cactatagtggtggagctggtaggtgtacccaggtcaatcagaggtgcaggacgcagggt 43834561
Query: 288 cggtggcccaaaaagagtgctgaatttttattgcacatgcttaaaaatgcagagagtaat 347
| ||||||| |||||| | |||||||||||||||||||||||||||| || || |
Sbjct: 43834560 caatggcccagaaagagcagtagatttttattgcacatgcttaaaaatgcaaagcatact 43834501
Query: 348 gctgaacttaagggcttagatgtagattctctggtcattgagcacatccaggtgaacaaa 407
| |||||||| ||| || ||||| ||||||||| | ||| |||||||||||||||
Sbjct: 43834500 g-----cttaagggtttacatatagatcctctggtcaaagggcatatccaggtgaacaaa 43834446
Query: 408 gcccccaaaatgcggcgtaggacttacagagctcatggtcgaatcaacccttacatgagt 467
||||||| | | | |||||| || ||||| ||||| || | ||| | | | || |
Sbjct: 43834445 gcccccatgaaggagtgtaggatctagtgagcttatggttgacttaacacatttaggaat 43834386
Query: 468 tctccctgccacattgagatgatccttactgaaaaagagcagattgttcctaagccagaa 527
|||| ||||| | ||||||||| |||||| || ||||||||||||||||||| ||||||
Sbjct: 43834385 tctctttgccatactgagatgattcttactaaagaagagcagattgttcctaaaccagaa 43834326
Query: 528 gaggaggttgcacag----aagaaaaagatatcccagaagaaactgaagaagcaaaaact 583
||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 43834325 gaggaagttgcacagaagaaagaaaaagatatcccagaataaactgaagaaacaaaaact 43834266
Query: 584 tatggcccgggaataaatt 602
|| |||| |||||||||||
Sbjct: 43834265 tagggcctgggaataaatt 43834247
Score = 170 bits (86), Expect = 7e-40
Identities = 141/158 (89%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 468 tctccctgccacattgagatgatccttactgaaaaagagcagattgttcctaagccagaa 527
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct: 20003215 tctcccagccacactgagatgatccttactgggaaagagcaggttgttgctaaaccagaa 20003274
Query: 528 gaggaggttgcacagaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatg 587
||||| |||| ||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 20003275 gaggacattgcgcaggagaaaaggatatcccagaagaaactgaagaaacaaaaacttatg 20003334
Query: 588 gcccgggaataaatttcacaaaaa-taaatgcaaataa 624
|||| ||||||||| |||||||| |||||||||||||
Sbjct: 20003335 gcccaagaataaattccacaaaaagtaaatgcaaataa 20003372
Score = 165 bits (83), Expect = 4e-38
Identities = 124/137 (90%), Gaps = 3/137 (2%)
Strand = Plus / Minus
Query: 488 gatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgcacagaagaa 547
||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||
Sbjct: 169910409 gatccttactgaaaaagagcagactgtttctaagtcagaagaggg---tgcacagaagaa 169910353
Query: 548 aaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataaatttcaca 607
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 169910352 aaagatatctcagaagaaactgaagaaacaaaaacttacagcccgggaataaatttcaca 169910293
Query: 608 aaaataaatgcaaataa 624
|||||||||||||||
Sbjct: 169910292 gcaataaatgcaaataa 169910276
Score = 149 bits (75), Expect = 3e-33
Identities = 100/107 (93%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 7 tttcttttccagtaagcggcctgaggtgacctctaaaa-atggttcgctattcactcgac 65
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 143588523 tttcttttcaggtaagcggcctgaggagacctctaaaaaatggttcgctattcacttgac 143588582
Query: 66 ccagaaaaccccacaaaatcatgcaaatcaagaggttcaaatcttcg 112
||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 143588583 ccagaaaaccccacaaaatgatgcaaatcaagagggtcaaatcttcg 143588629
Score = 133 bits (67), Expect = 2e-28
Identities = 224/275 (81%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 125 gaacactcgtgaaactgcccaggccattaagggtatgcatattcgaaaagccaccaagta 184
|||||| | |||||||| ||||||||| ||||||||||||| | ||||| || ||||||
Sbjct: 20002896 gaacacacatgaaactgtccaggccatgaagggtatgcataaccaaaaagtcatcaagta 20002955
Query: 185 tctgaaagacgtcactctacagaagcaatgtgtgccattccgtcgttacaatggtggagt 244
|||||| | ||||| ||||||||| ||||| ||||| | |||||| || |||||
Sbjct: 20002956 tctgaaggctgtcacctcacagaagcatcgtgtgtcattctgatgttacagcggaggagt 20003015
Query: 245 cggtaggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaaagag 304
|| || ||||| |||||| ||| |||||||| |||||||| ||||||| |||||||
Sbjct: 20003016 tgggagacgtgcc-aggccagacactggggctgagcacagggttagtggccctaaaagag 20003074
Query: 305 tgctgaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagggctt 364
|||| ||||||| || || |||| |||||||||||||| ||||||||||| |||||
Sbjct: 20003075 ggctgcatttttactgtacgtgctccaaaatgcagagagttatgctgaactttagggccc 20003134
Query: 365 agatgtagattctctggtcattgagcacatccagg 399
||||||||||| |||| ||| ||||| ||||||||
Sbjct: 20003135 agatgtagattttctgatcaatgagctcatccagg 20003169
Score = 107 bits (54), Expect = 9e-21
Identities = 151/181 (83%), Gaps = 3/181 (1%)
Strand = Plus / Minus
Query: 182 gtatctgaaagacgtcactctacagaagcaatgtg-tgccattccgtcgttacaatggtg 240
|||||||| ||| |||||| || |||||||||| | ||||| || ||| ||||||||||
Sbjct: 88957091 gtatctgagagatgtcactttatagaagcaatggggtgccactctgtccttacaatggta 88957032
Query: 241 gagtcggtaggtgtgcccaggccaaacagtggggctggacacagggtcggtggcccaaaa 300
||| || || |||||||||| |||||||||| |||||||||||||| | ||||| | |
Sbjct: 88957031 gagctggcagatgtgcccaggtgaaacagtgggactggacacagggtcaggggccccaga 88956972
Query: 301 agagtgctgaatttttattgcacatgcttaaaaatgcagagagtaatgctgaacttaagg 360
||||||||| |||| |||| |||||||||| |||||||||||||| | |||||||||
Sbjct: 88956971 agagtgctg--ttttcgctgcagatgcttaaaagtgcagagagtaatgataaacttaagg 88956914
Query: 361 g 361
|
Sbjct: 88956913 g 88956913
Score = 103 bits (52), Expect = 1e-19
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 27 ctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaatca 86
||||| ||| |||| ||||||| |||| ||||||| || |||||||| ||||||||||||
Sbjct: 88957260 ctgagttgatctctgaaaatggatcgcaattcacttgatccagaaaatcccacaaaatca 88957201
Query: 87 tgcaaatcaagaggttcaaatcttcgtgttcacttt 122
| ||||||||||||||||||||| |||||||||||
Sbjct: 88957200 agtaaatcaagaggttcaaatctttgtgttcacttt 88957165
Score = 97.6 bits (49), Expect = 8e-18
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 26 cctgaggtgacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaatc 85
||||||||||||||| |||||| ||| |||||| | ||||||||||||| || || |||
Sbjct: 43842586 cctgaggtgacctctgaaaatgattcactattcgtttgacccagaaaacctcaaaagatc 43842527
Query: 86 atgcaaatcaagaggttcaaatcttcgtgttca 118
||| ||||||||||||||||||||||| |||||
Sbjct: 43842526 atgaaaatcaagaggttcaaatcttcgggttca 43842494
Score = 95.6 bits (48), Expect = 3e-17
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 479 cattgagatgatccttactgaaaaagagcagattgttcctaagccagaagaggaggttgc 538
||||||||||||| || || || |||| ||||||||||||| || ||||||| |||||
Sbjct: 88956816 cattgagatgatctttcctaaagaagaacagattgttcctagaccccaagaggatgttgc 88956757
Query: 539 acagaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaata 598
| ||||||||||||| || ||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 88956756 atggaagaaaaagataccctagaagaaactgctgaaacaaaaacttatggcccaggaata 88956697
Score = 87.7 bits (44), Expect = 8e-15
Identities = 104/125 (83%), Gaps = 8/125 (6%)
Strand = Plus / Plus
Query: 101 ttcaaatcttcgtgttcactttaagaacactcgtgaaactgcccaggccattaagggtat 160
||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 79453765 ttcaaatcttcgtaatcactttaggagcacttgtgaaactgcccaggccattaagggtat 79453824
Query: 161 gcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaatgtgtgcc 220
||||||||||||| |||| |||| |||||| |||||||||| ||||||||
Sbjct: 79453825 --------gaaaagccaccaaacatctcaaagctgtcactttacagaagcagtgtgtgcc 79453876
Query: 221 attcc 225
||||
Sbjct: 79453877 gttcc 79453881
Score = 75.8 bits (38), Expect = 3e-11
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 540 cagaagaaaaagatatcccagaagaaactgaagaagcaaaaacttatggcccgggaataa 599
|||||||| |||||||||| ||||||||||||||| |||||||||| ||| |||||||
Sbjct: 79454598 cagaagaacaagatatccc-gaagaaactgaagaaacaaaaacttagagcctaggaataa 79454656
Query: 600 atttcac-aaaaataaatgcaaataa 624
||| | | ||||||||||||||||||
Sbjct: 79454657 attccgcaaaaaataaatgcaaataa 79454682
>Sscrofa_Chr04
|| Length = 143465943
Score = 438 bits (221), Expect = e-120
Identities = 484/570 (84%), Gaps = 15/570 (2%)
Strand = Plus / Minus
Query: 34 gacctctaaaaatggttcgctattcactcgacccagaaaaccccacaaaatcatgcaaat 93
|||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 7923033 gacctctaaaaatggttcccttttcacttgacccagaaaaccccacaaaatcatgcaaac 7922974
Query: 94 caagaggtt-caaatcttcgtgttcactttaagaacactcgtgaaactgcccaggccatt 152
||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
Sbjct: 7922973 caagaggtttcaaatcttcgtgtccactt-aagaacactggtgaaactgcccaggccact 7922915
Query: 153 aagggtatgcatattcgaaaagccaccaagtatctgaaagacgtcactctacagaagcaa 212
|||| |||||| ||||||||||| |||| || |||||| ||||||||| |
Sbjct: 7922914 aaggatatgca-----------ccaccaagtatgtgaaggatgtcactttacagaagcca 7922866
Query: 213 tgtgtgccattccgtcgttacaatggtggagtcggtaggtgtgcccaggccaaacagtgg 272
|||||||| |||| | ||||||||||||| ||| |||||| |||| |||| ||| |
Sbjct: 7922865 tgtgtgcccttccagcagtacaatggtggagctggtgggtgtgtccagcccaagcagcag 7922806
Query: 273 ggctggacacagggtcggtggcccaaaaagagtgctgaatttttattgcacatgcttaaa 332
|||||| |||||| |||| ||||| ||||||| |||||||||||||||| ||||| |||
Sbjct: 7922805 ggctgggcacaggatcggaggccccaaaagagctctgaatttttattgcagatgctcaaa 7922746
Query: 333 aatgcagagagtaatgctgaacttaagggcttagatgtagattctctggtcattgagcac 392
||||| ||| | |||||||| |||||||||| |||| |||||||||||| |||||||||
Sbjct: 7922745 aatgcggaggg--atgctgaatttaagggcttcgatgcagattctctggtaattgagcac 7922688
Query: 393 atccaggtgaacaaagcccccaaaatgcggcgtaggacttacagagctcatggtcgaatc 452
||||||||||| ||||||||||| |||| | | ||||||||| |||| ||||| | |
Sbjct: 7922687 atccaggtgaataaagcccccaagatgcagtgcaggacttactgagcgtgtggtcagagc 7922628
Query: 453 aacccttacatgagttctccctgccacattgagatgatccttactgaaaaagagcagatt 512
|||||| | |||||| ||||||||||| |||||||| |||||||||||| ||| ||
Sbjct: 7922627 aaccctaatgtgagttttccctgccacagtgagatgagccttactgaaaaggagaagggg 7922568
Query: 513 gttcctaagccagaagaggaggttgcacagaagaaaaagatatcccagaagaaactgaag 572
||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct: 7922567 gttcctaagccagcagaggaggttgcacagaagacaaagatgtcccagaagaaaatgaag 7922508
Query: 573 aagcaaaaacttatggcccgggaataaatt 602
|| |||||||| |||||| |||| ||||||
Sbjct: 7922507 aaacaaaaactcatggcctgggagtaaatt 7922478
Score = 75.8 bits (38), Expect = 3e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 587 ggcccgggaataaatttcacaaaaataaatgcaaataa 624
||||||||||||||||||||||||||||||||||||||
Sbjct: 34687421 ggcccgggaataaatttcacaaaaataaatgcaaataa 34687458
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,677,037
Number of extensions: 1001
Number of successful extensions: 1001
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 117
Length of query: 753
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 732
Effective length of database: 2,808,413,156
Effective search space: 2055758430192
Effective search space used: 2055758430192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)