Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus]. 445 e-133
>ref|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus].
Length = 623
Score = 445 bits (1145), Expect(2) = e-133
Identities = 227/277 (81%), Positives = 236/277 (85%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
ML QAA RLVRGSLRQTSWAQWGQRE RL QLAPFTTIHKDK LSD
Sbjct: 1 MLVQAAARLVRGSLRQTSWAQWGQREPRLCQLAPFTTIHKDKALSDKRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQLSQ ++GVAAEEESLDPNQYFKIRSQA+HQLKV+GE
Sbjct: 61 IAEKEAKQKELSEKQLSQAAASNHSA--EDGVAAEEESLDPNQYFKIRSQAIHQLKVNGE 118
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLTHFI+EYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 119 DPYPHKFHVDISLTHFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 178
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEF+RINNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHM
Sbjct: 179 KLQVMANSRNYKSEEEFIRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM 238
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 239 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 275
Score = 50.1 bits (118), Expect(2) = e-133
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 281 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 313
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,344,885
Number of extensions: 1075782
Number of successful extensions: 3089
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3088
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 448 e-134
Alignment gi|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 448 e-134
Alignment gi|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 375 e-112
Alignment gi|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 375 e-106
Alignment gi|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 180 7e-54
Alignment gi|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 180 7e-54
Alignment gi|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 171 4e-51
>ref|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 625
Score = 448 bits (1153), Expect(2) = e-134
Identities = 224/277 (80%), Positives = 235/277 (84%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
MLTQAAVRLVRG+LRQTSWA+WGQRELRL QLAPFT +HKDKPLSD
Sbjct: 1 MLTQAAVRLVRGALRQTSWARWGQRELRLCQLAPFTALHKDKPLSDKRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GE
Sbjct: 61 IAEKEAKQKELSEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGE 120
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 121 DPYPHKFHVDISLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 180
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHM
Sbjct: 181 KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHM 240
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 241 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 277
Score = 50.1 bits (118), Expect(2) = e-134
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 283 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 315
>ref|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 625
Score = 448 bits (1153), Expect(2) = e-134
Identities = 224/277 (80%), Positives = 235/277 (84%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
MLTQAAVRLVRG+LRQTSWA+WGQRELRL QLAPFT +HKDKPLSD
Sbjct: 1 MLTQAAVRLVRGALRQTSWARWGQRELRLCQLAPFTALHKDKPLSDKRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GE
Sbjct: 61 IAEKEAKQKELSEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGE 120
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 121 DPYPHKFHVDISLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 180
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHM
Sbjct: 181 KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHM 240
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 241 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 277
Score = 50.1 bits (118), Expect(2) = e-134
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 283 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 315
>ref|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 1 [Canis familiaris].
Length = 597
Score = 375 bits (962), Expect(2) = e-112
Identities = 183/206 (88%), Positives = 191/206 (92%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 103
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFG +DK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSK 249
Score = 50.1 bits (118), Expect(2) = e-112
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 255 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 287
>ref|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 4 [Canis familiaris].
Length = 557
Score = 375 bits (962), Expect(2) = e-106
Identities = 183/206 (88%), Positives = 191/206 (92%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 103
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFG +DK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSK 249
Score = 28.5 bits (62), Expect(2) = e-106
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 950 QIITYIRSFLEALEFLKI 1003
+IITYIRSFL+ L FL+I
Sbjct: 249 KIITYIRSFLDELGFLEI 266
>ref|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 7 [Canis familiaris].
Length = 441
Score = 180 bits (456), Expect(2) = 7e-54
Identities = 86/93 (92%), Positives = 91/93 (97%)
Frame = +3
Query: 675 MANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHL 854
MANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 855 HFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
HFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 93
Score = 50.1 bits (118), Expect(2) = 7e-54
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 99 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 131
>ref|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 6 [Canis familiaris].
Length = 441
Score = 180 bits (456), Expect(2) = 7e-54
Identities = 86/93 (92%), Positives = 91/93 (97%)
Frame = +3
Query: 675 MANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHL 854
MANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 855 HFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
HFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 93
Score = 50.1 bits (118), Expect(2) = 7e-54
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 99 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 131
>ref|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 5 [Canis familiaris].
Length = 437
Score = 171 bits (432), Expect(2) = 4e-51
Identities = 81/88 (92%), Positives = 86/88 (97%)
Frame = +3
Query: 690 NYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQ 869
NYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFG +
Sbjct: 2 NYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK 61
Query: 870 DKETRYRQRYLDLILNDFVRQKFIIRSR 953
DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 62 DKETRYRQRYLDLILNDFVRQKFIIRSK 89
Score = 50.1 bits (118), Expect(2) = 4e-51
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 95 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,091,917
Number of extensions: 1110994
Number of successful extensions: 3647
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3639
Number of HSP's successfully gapped: 14
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapien... 435 e-130
Alignment gi|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens]. 370 e-111
>ref|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapiens].
Length = 625
Score = 435 bits (1119), Expect(2) = e-130
Identities = 219/277 (79%), Positives = 231/277 (83%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
MLTQAAVRLVRGSLR+TSWA+WG RELRL QLAPFT HKDK SD
Sbjct: 1 MLTQAAVRLVRGSLRKTSWAEWGHRELRLGQLAPFTAPHKDKSFSDQRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQLSQ DNGV EEES+DPNQY+KIRSQA+HQLKV+GE
Sbjct: 61 VAEKEAKQKELSEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGE 120
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLT FI++YSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 121 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 180
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEF+ INNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHM
Sbjct: 181 KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM 240
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 241 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 277
Score = 50.1 bits (118), Expect(2) = e-130
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 283 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 315
>ref|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens].
Length = 597
Score = 370 bits (951), Expect(2) = e-111
Identities = 181/206 (87%), Positives = 191/206 (92%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQLSQ DNGV EEES+DPNQY+KIRSQA+HQLKV+GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDI 103
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLT FI++YSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEF+ INNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFG +DK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSK 249
Score = 50.1 bits (118), Expect(2) = e-111
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 255 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,247,462
Number of extensions: 1088249
Number of successful extensions: 3241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3231
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculu... 431 e-129
Alignment gi|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus]. 362 e-108
Alignment gi|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1... 356 e-107
>ref|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculus].
Length = 624
Score = 431 bits (1109), Expect(2) = e-129
Identities = 218/277 (78%), Positives = 233/277 (84%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
ML QAAVRLVRG+LRQTSWA+WGQRELRL LAPFTT+HKD+PLSD
Sbjct: 1 MLMQAAVRLVRGALRQTSWAEWGQRELRLGHLAPFTTLHKDQPLSDRRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GE
Sbjct: 61 LAEKEAKQKELSEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGE 119
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLT FI+EYSHLQPGDHLTD+TLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 120 DPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGV 179
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEFV INNKLRRGDIIGV+G+PGKTKKGELSIIP EITLLSPCLHM
Sbjct: 180 KLQVMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHM 239
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFI+RS+
Sbjct: 240 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSK 276
Score = 50.1 bits (118), Expect(2) = e-129
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 282 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 314
>ref|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus].
Length = 595
Score = 362 bits (928), Expect(2) = e-108
Identities = 179/206 (86%), Positives = 190/206 (92%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDI
Sbjct: 43 SEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDI 101
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLT FI+EYSHLQPGDHLTD+TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 102 SLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 161
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEFV INNKLRRGDIIGV+G+PGKTKKGELSIIP EITLLSPCLHMLPHLHFG +DK
Sbjct: 162 KSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDK 221
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQKFI+RS+
Sbjct: 222 ETRYRQRYLDLILNDFVRQKFIVRSK 247
Score = 50.1 bits (118), Expect(2) = e-108
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 253 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 285
>ref|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Mus musculus].
Length = 595
Score = 356 bits (914), Expect(2) = e-107
Identities = 177/206 (85%), Positives = 188/206 (91%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDI
Sbjct: 43 SEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDI 101
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLT FI+EYSHLQPGDHLTD+TLKVAGRI AKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 102 SLTQFIQEYSHLQPGDHLTDVTLKVAGRIQAKRASGGKLIFYDLRGEGVKLQVMANSRNY 161
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEFV INNKLRRGDIIGV+G+PGKTKKGELSIIP EITLLSPCLHMLPHLHFG +DK
Sbjct: 162 KSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDK 221
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQK I+RS+
Sbjct: 222 ETRYRQRYLDLILNDFVRQKLIVRSK 247
Score = 50.1 bits (118), Expect(2) = e-107
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL +G + TPMMNIIPGGAVAKPFITYH
Sbjct: 253 RSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,005,690
Number of extensions: 906290
Number of successful extensions: 2658
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2650
Number of HSP's successfully gapped: 6
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [... 470 e-141
Alignment gi|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [... 387 e-116
>ref|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [Sus scrofa].
Length = 625
Score = 470 bits (1209), Expect(2) = e-141
Identities = 239/277 (86%), Positives = 241/277 (87%)
Frame = +3
Query: 123 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXX 302
MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSD
Sbjct: 1 MLTQAAVRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDKRSELKRRLKAEKK 60
Query: 303 XXXXXXXXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 482
SEKQLSQ DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE
Sbjct: 61 IAEKEAKQKELSEKQLSQATTAATNHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGE 120
Query: 483 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 662
DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
Sbjct: 121 DPYPHKFHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV 180
Query: 663 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 842
KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM
Sbjct: 181 KLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHM 240
Query: 843 LPHLHFGPQDKETRYRQRYLDLILNDFVRQKFIIRSR 953
LPHLHFG +DKETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 241 LPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 277
Score = 50.4 bits (119), Expect(2) = e-141
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL ++G + TPMMNIIPGGAVAKPFITYH
Sbjct: 283 RSFLDALGFLEIETPMMNIIPGGAVAKPFITYH 315
>ref|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [Sus scrofa].
Length = 597
Score = 387 bits (995), Expect(2) = e-116
Identities = 193/206 (93%), Positives = 195/206 (94%)
Frame = +3
Query: 336 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 515
SEKQLSQ DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATTAATNHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 103
Query: 516 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 695
SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 696 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGPQDK 875
KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFG +DK
Sbjct: 164 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 876 ETRYRQRYLDLILNDFVRQKFIIRSR 953
ETRYRQRYLDLILNDFVRQKFIIRS+
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSK 249
Score = 50.4 bits (119), Expect(2) = e-116
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +1
Query: 967 KKFLGSVGIPKN*TPMMNIIPGGAVAKPFITYH 1065
+ FL ++G + TPMMNIIPGGAVAKPFITYH
Sbjct: 255 RSFLDALGFLEIETPMMNIIPGGAVAKPFITYH 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,357,652
Number of extensions: 692176
Number of successful extensions: 2000
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007275
(1075 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 363 1e-97
>Sscrofa_Chr06
|| Length = 157765593
Score = 363 bits (183), Expect = 1e-97
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 686 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907783 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 11907842
Query: 746 cataattggagttcagggcagtcctgggaaaaccaagaagggtgagctgagcatcattcc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907843 cataattggagttcagggcagtcctgggaaaaccaagaagggtgagctgagcatcattcc 11907902
Query: 806 ctatgagatcacgctgctgtctccttgcttgcacatgttacctcatcttcactttggccc 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907903 ctatgagatcacgctgctgtctccttgcttgcacatgttacctcatcttcactttggcct 11907962
Query: 866 ccaggacaagg 876
| |||||||||
Sbjct: 11907963 caaggacaagg 11907973
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 89 gtggtggtaatcattagttccagggtattctaccatgttgacgcaagctgctgtaaggct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900742 gtggtggtaatcattagttccagggtattctaccatgttgacgcaagctgctgtaaggct 11900801
Query: 149 ggttagggggtccctgcgccaaacctcctgggcacagtgggggcagagggagctgcgcct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900802 ggttagggggtccctgcgccaaacctcctgggcacagtgggggcagagggagctgcgcct 11900861
Query: 209 gtatcaacttgcccctttcacaacgattcacaaggacaagccactttctgataaaagaag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900862 gtatcaacttgcccctttcacaacgattcacaaggacaagccactttctgataaaagaag 11900921
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 429 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904070 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 11904129
Query: 489 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904130 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 11904189
Query: 549 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904190 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 11904241
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 267 agtgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903066 agtgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcag 11903125
Query: 327 aaggagctcagtgaaaaacagctaagccaggccaccactgctgccaccaaccacaccact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903126 aaggagctcagtgaaaaacagctaagccaggccaccactgctgccaccaaccacaccact 11903185
Query: 387 gacaatggcgttgctgcggaggaggagagcctggacccaaat 428
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903186 gacaatggcgttgctgcggaggaggagagcctggacccaaat 11903227
Score = 216 bits (109), Expect = 2e-53
Identities = 122/125 (97%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 874 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgacttcgtgaggcaga 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11908057 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgacttcgtgaggcaga 11908116
Query: 934 aatttatcatccgctcc-agatcatcacatacataagaagtttcttggaagcgttggaat 992
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 11908117 aatttatcatccgctccaagatcatcacatacataagaagtttcttggatgcgttgggat 11908176
Query: 993 tccta 997
|||||
Sbjct: 11908177 tccta 11908181
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 593 aggtaggatccatgccaaaagagcttctgggggaaagctcatcttctatgaccttcgagg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907343 aggtaggatccatgccaaaagagcttctgggggaaagctcatcttctatgaccttcgagg 11907402
Query: 653 agagggggtcaagttgcaagtcatggccaattccagg 689
|||||||||||||||||||||||||||||||||||||
Sbjct: 11907403 agagggggtcaagttgcaagtcatggccaattccagg 11907439
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ctctttaggtccggccctcgggaaagatggctgcggtacaggcggctgaagttaaagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898440 ctctttaggtccggccctcgggaaagatggctgcggtacaggcggctgaagttaaagtgg 11898499
Query: 61 acggcgcggagccgaaactgagcaaaaagt 90
||||||||||||||||||||||||||||||
Sbjct: 11898500 acggcgcggagccgaaactgagcaaaaagt 11898529
Score = 127 bits (64), Expect = 1e-26
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1005 aactcccatgatgaacatcatcccagggggagctgtggccaagccttttatcacctacca 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910025 aactcccatgatgaacatcatcccagggggagctgtggccaagccttttatcacctacca 11910084
Query: 1065 c-acgagctgga 1075
| ||||||||||
Sbjct: 11910085 caacgagctgga 11910096
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,586,979
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 8
Length of query: 1075
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1054
Effective length of database: 2,808,413,156
Effective search space: 2960067466424
Effective search space used: 2960067466424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)